Query 031989
Match_columns 149
No_of_seqs 109 out of 1085
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03157 spermidine hydroxycin 100.0 3.1E-40 6.6E-45 274.9 14.7 148 1-148 1-149 (447)
2 PLN02663 hydroxycinnamoyl-CoA: 100.0 6.1E-39 1.3E-43 265.9 14.9 148 1-148 1-148 (431)
3 PF02458 Transferase: Transfer 100.0 2.7E-38 5.8E-43 260.6 9.5 147 1-148 1-150 (432)
4 PLN02481 Omega-hydroxypalmitat 100.0 4.3E-36 9.4E-41 249.4 13.9 147 1-148 12-161 (436)
5 PLN00140 alcohol acetyltransfe 100.0 2.5E-36 5.5E-41 251.4 11.9 143 1-148 1-151 (444)
6 PRK09294 acyltransferase PapA5 58.8 22 0.00049 29.2 5.1 37 51-87 34-70 (416)
7 PF11631 DUF3255: Protein of u 42.6 24 0.00051 23.9 2.2 28 62-89 77-104 (123)
8 PF13092 CENP-L: Kinetochore c 41.5 20 0.00044 26.1 1.9 16 134-149 137-152 (162)
9 PHA01809 hypothetical protein 36.8 29 0.00063 20.6 1.7 14 135-148 11-24 (65)
10 TIGR02946 acyl_WS_DGAT acyltra 31.1 1.2E+02 0.0026 25.0 5.2 37 36-77 20-56 (446)
11 COG0771 MurD UDP-N-acetylmuram 30.8 44 0.00096 28.5 2.6 30 58-95 296-325 (448)
12 PF01330 RuvA_N: RuvA N termin 28.4 53 0.0011 19.5 2.0 36 69-106 4-39 (61)
13 COG3580 Uncharacterized protei 27.3 39 0.00085 27.6 1.6 14 131-144 273-286 (351)
14 COG4288 Uncharacterized protei 25.5 1.8E+02 0.0039 20.0 4.3 16 128-143 94-109 (124)
15 PF03007 WES_acyltransf: Wax e 22.5 2.2E+02 0.0048 22.0 5.0 45 34-78 18-63 (263)
16 PRK02801 primosomal replicatio 21.9 98 0.0021 20.5 2.5 23 69-95 6-28 (101)
No 1
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=100.00 E-value=3.1e-40 Score=274.93 Aligned_cols=148 Identities=42% Similarity=0.660 Sum_probs=130.2
Q ss_pred CeEEEEeeEEEeCCCCCCCCcccCCcCcCCCCCccccEEEEecCCCCCCC-cCHHHHHHHHHhccccccccceeeeeCCC
Q 031989 1 MIINVKESTMVRPAAETPRVALWNANVDLVVPRFHTPSVYFYRPTGAANF-FDAGVLKDALSKALVPFYPMAGRLKRDDD 79 (149)
Q Consensus 1 ~~V~i~~~~~V~P~~~t~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~~~~-~~~~~Lk~sLs~~L~~f~plAGRl~~~~~ 79 (149)
|.|++.++++|+|+.|||++.++||+||+...++|++.+|||+++..... ..+++||+|||+||++||||||||+.+++
T Consensus 1 ~~v~~~~~~~v~Ps~ptp~~~~~LS~lD~~~~~~~v~~v~fy~~~~~~~~~~~~~~Lk~sLs~~L~~fyplAGRl~~~~~ 80 (447)
T PLN03157 1 MVVILKASYTVKPAKPTWTGRRSLSEWDQVGTITHVPTIYFYSPPWNTSSGSIIEILKDSLSRALVPFYPLAGRLRWIGG 80 (447)
T ss_pred CeEEEeccEEECCCCCCCCCccCCChhhhccccccCCEEEEEeCCCccccccHHHHHHHHHHHHHhhccccCEEEEEcCC
Confidence 78999999999999999989999999999877899999999986532222 34799999999999999999999999989
Q ss_pred CCeEEeccCCCceEEEEEccccccccCCCCCChhhhccCCccccCCCCCCCCeEEEeeeecCCceEEee
Q 031989 80 GRIEIDCNAEGVLFVEAETTSLIDDFGDFAPTLELKQLIPTIDYSGGISTYPLLVLQVCLYIYLFYCKK 148 (149)
Q Consensus 80 g~~~i~cn~~Gv~f~~A~~~~~l~~l~~~~~~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGg~~~~ 148 (149)
|+++|+|||+||+|+||+++++|+|+++..+.+.+++|+|..+...+..+.|++.||||+|.|||++|.
T Consensus 81 g~~~i~c~~~Gv~fveA~~~~~l~~~~~~~~~~~~~~l~P~~~~~~~~~~~Pll~vQvT~F~cGG~~lg 149 (447)
T PLN03157 81 GRLELECNAMGVLLIEAESEAKLDDFGDFSPTPEFEYLIPSVDYTKPIHELPLLLVQLTKFSCGGISLG 149 (447)
T ss_pred CcEEEEECCCCeEEEEEEeCCcHHHhhccCCCHHHHhhcCCCCcccccccCceEEEEEEEecCCCEEEE
Confidence 999999999999999999999999998766666688899976543344568999999999999999985
No 2
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=100.00 E-value=6.1e-39 Score=265.91 Aligned_cols=148 Identities=80% Similarity=1.277 Sum_probs=130.2
Q ss_pred CeEEEEeeEEEeCCCCCCCCcccCCcCcCCCCCccccEEEEecCCCCCCCcCHHHHHHHHHhccccccccceeeeeCCCC
Q 031989 1 MIINVKESTMVRPAAETPRVALWNANVDLVVPRFHTPSVYFYRPTGAANFFDAGVLKDALSKALVPFYPMAGRLKRDDDG 80 (149)
Q Consensus 1 ~~V~i~~~~~V~P~~~t~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~~~~~~~~~Lk~sLs~~L~~f~plAGRl~~~~~g 80 (149)
|+|+|.++++|+|+.|||+++++||+||+...++|++.+|||+.+..+...+.++||+|||++|++||||||||+.+++|
T Consensus 1 ~~v~~~~~~~V~Ps~ptp~~~~~LS~lD~~~~~~~~~~v~fY~~~~~~~~~~~~~Lk~sLs~~L~~~yplaGRl~~~~~g 80 (431)
T PLN02663 1 MIINVRESTMVRPAEETPRRGLWNSNVDLVVPRFHTPSVYFYRPTGASNFFDPQVMKEALSKALVPFYPMAGRLRRDEDG 80 (431)
T ss_pred CeEEEcCcEEECCCCCCCCCcccCChhhcccccccccEEEEEcCCCCCCccCHHHHHHHHHHHHhhccccceeeeECCCC
Confidence 78999999999999999999999999999888899999999997543333457999999999999999999999999899
Q ss_pred CeEEeccCCCceEEEEEccccccccCCCCCChhhhccCCccccCCCCCCCCeEEEeeeecCCceEEee
Q 031989 81 RIEIDCNAEGVLFVEAETTSLIDDFGDFAPTLELKQLIPTIDYSGGISTYPLLVLQVCLYIYLFYCKK 148 (149)
Q Consensus 81 ~~~i~cn~~Gv~f~~A~~~~~l~~l~~~~~~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGg~~~~ 148 (149)
+++|+|||+||.|+||+++.+++|+.+..+...+++|+|..+...+..+.|++.||||+|.|||++|+
T Consensus 81 ~~~i~c~~~Gv~fv~A~~~~~l~~~~~~~~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~F~cGG~~lg 148 (431)
T PLN02663 81 RIEIDCNAEGVLFVEADTPSVIDDFGDFAPTLELRQLIPTVDYSGGISSYPLLVLQVTHFKCGGVSLG 148 (431)
T ss_pred CEEEEECCCCceEEEEecCCCHHHhhccCCCHHHHhhcCCCCCccccccCceEEEEEEEeccCCEEEE
Confidence 99999999999999999999999998765555677899876543334568999999999999999985
No 3
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=100.00 E-value=2.7e-38 Score=260.61 Aligned_cols=147 Identities=39% Similarity=0.640 Sum_probs=118.0
Q ss_pred CeEEEEeeEEEeCCCCCCCCcccCCcCc-CCCCCccccEEEEecCCCCCCCc-CHHHHHHHHHhccccccccceeeeeCC
Q 031989 1 MIINVKESTMVRPAAETPRVALWNANVD-LVVPRFHTPSVYFYRPTGAANFF-DAGVLKDALSKALVPFYPMAGRLKRDD 78 (149)
Q Consensus 1 ~~V~i~~~~~V~P~~~t~~~~~~LS~lD-~~~~~~~~~~v~fy~~~~~~~~~-~~~~Lk~sLs~~L~~f~plAGRl~~~~ 78 (149)
|+|+|.++++|+|+.|+|...++||+|| +.+..+|++.+|||+.+...... .++.||+|||+||++|||||||| .++
T Consensus 1 m~v~v~~~~~V~Ps~~tp~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~Lk~sLs~~L~~~~~lAGrl-~~~ 79 (432)
T PF02458_consen 1 MKVTVLSRSLVKPSSPTPPHTLPLSNLDLQLMPPYYVPVLLFYRPPSSSDDSDIVDNLKESLSKTLVHYYPLAGRL-RDP 79 (432)
T ss_dssp ---EEEEECEEE-STTS-TCEEE--HHHHHCCGCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTSGGGGSEE-ESS
T ss_pred CCCEEecCEEEECCCCCCCCcccCchhhcCcccccEEEEEEEecCccccccchHHHHHHHHHHHhHhhCcccCcEE-ccc
Confidence 8999999999999999998999999999 77777899999999987532222 47999999999999999999999 777
Q ss_pred CCCeEEeccCCCceEEEEEccccccccCCCCC-ChhhhccCCccccCCCCCCCCeEEEeeeecCCceEEee
Q 031989 79 DGRIEIDCNAEGVLFVEAETTSLIDDFGDFAP-TLELKQLIPTIDYSGGISTYPLLVLQVCLYIYLFYCKK 148 (149)
Q Consensus 79 ~g~~~i~cn~~Gv~f~~A~~~~~l~~l~~~~~-~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGg~~~~ 148 (149)
+|+++|+|||+||+|+||+++.+++|+.+..+ .....+|+|......+....|++.||||+|+|||++|.
T Consensus 80 ~~~~~i~c~d~Gv~f~~a~~~~~l~~~~~~~~~~~~~~~l~p~~~~~~~~~~~Pll~vQvt~f~~GG~~lg 150 (432)
T PF02458_consen 80 DGRLEIDCNDDGVEFVEAEADGTLDDLLDLEPPSEFLRDLVPQLPVSSEGEDAPLLAVQVTRFKCGGLALG 150 (432)
T ss_dssp CTTTEEEECTTTEEEEEEEESS-HHHHCSSSCCGGGGGGGSSS-SSSEEETTEBSEEEEEEEETTTEEEEE
T ss_pred ccceEEEEecCCCEEEEEecccceeeccccccchHHHHHHhhhcccCCcccccceeEeeeeeecccceeee
Confidence 99999999999999999999999999988663 33467788876654444568999999999999999985
No 4
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=100.00 E-value=4.3e-36 Score=249.41 Aligned_cols=147 Identities=33% Similarity=0.546 Sum_probs=126.1
Q ss_pred CeEEEEeeEEEeCCCCCCCCcccCCcCcCCCCCccccEEEEecCCCCC-CCcCHHHHHHHHHhccccccccceeeeeCCC
Q 031989 1 MIINVKESTMVRPAAETPRVALWNANVDLVVPRFHTPSVYFYRPTGAA-NFFDAGVLKDALSKALVPFYPMAGRLKRDDD 79 (149)
Q Consensus 1 ~~V~i~~~~~V~P~~~t~~~~~~LS~lD~~~~~~~~~~v~fy~~~~~~-~~~~~~~Lk~sLs~~L~~f~plAGRl~~~~~ 79 (149)
+.|++.++++|+|+.|||+++++||++|+.+ .+|++.+|||+.+... ....+++||+||+++|++||||||||+.+++
T Consensus 12 ~~v~~~~~~~V~Ps~ptp~~~~~LS~lD~~~-~~~~~~~~fy~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRL~~~~~ 90 (436)
T PLN02481 12 LVVKQKEPELVPPAEETPKGLYFLSNLDQNI-AVIVRTVYCFKSEERGSNEDPVDVIKKALSKVLVHYYPLAGRLTISSE 90 (436)
T ss_pred eEEEEcCCEEeCCCCCCCCCceecCccccCc-ceeeeEEEEECCCCcccccCHHHHHHHHHHHHhccccCCCCeeeeCCC
Confidence 4799999999999999999999999999965 4789999999976432 2346899999999999999999999999989
Q ss_pred CCeEEeccCCCceEEEEEccccccccCCC-CC-ChhhhccCCccccCCCCCCCCeEEEeeeecCCceEEee
Q 031989 80 GRIEIDCNAEGVLFVEAETTSLIDDFGDF-AP-TLELKQLIPTIDYSGGISTYPLLVLQVCLYIYLFYCKK 148 (149)
Q Consensus 80 g~~~i~cn~~Gv~f~~A~~~~~l~~l~~~-~~-~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGg~~~~ 148 (149)
|+++|+|||+||.|+||+++.+++|+.+. .| .+.+++|+|..+...+....|+++||||+|+|||++|.
T Consensus 91 g~~~i~c~~~Gv~fvea~~d~~l~~l~~~~~p~~~~~~~l~~~~~~~~~~~~~Pll~vQvT~F~~GG~~lg 161 (436)
T PLN02481 91 GKLIVDCTGEGVVFVEAEANCSIEEIGDITKPDPETLGKLVYDVPGAKNILEIPPLTAQVTRFKCGGFVLG 161 (436)
T ss_pred CcEEEEEcCCCeEEEEEEecCcHHHhccccCCCCHHHHHhCCCCCCcccccccceeeeccceEecCcEEEE
Confidence 99999999999999999999999999764 34 33577888765533333457999999999999999985
No 5
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=251.41 Aligned_cols=143 Identities=25% Similarity=0.403 Sum_probs=120.6
Q ss_pred CeEEEEeeEEEeCCCCCCC--CcccCCcCcCCCCCccccEEEEecCCCCCC-C--cCHHHHHHHHHhccccccccceeee
Q 031989 1 MIINVKESTMVRPAAETPR--VALWNANVDLVVPRFHTPSVYFYRPTGAAN-F--FDAGVLKDALSKALVPFYPMAGRLK 75 (149)
Q Consensus 1 ~~V~i~~~~~V~P~~~t~~--~~~~LS~lD~~~~~~~~~~v~fy~~~~~~~-~--~~~~~Lk~sLs~~L~~f~plAGRl~ 75 (149)
|+|++.++++|+|+.|||. +.++||+||+.+.++|++.+|||+.+.... + ..+++||+|||+||++||||||||+
T Consensus 1 ~~v~~~s~~~V~Ps~ptp~~~~~~~LS~lD~~~~~~~~~~~~fY~~~~~~~~~~~~~~~~Lk~sLs~~L~~fyplAGRl~ 80 (444)
T PLN00140 1 MEVSIISRELIKPSSPSIHHLKPFKLSLLDQLTPTTYIPMIFFYPTNNNQNFKGLQISIQLKRSLSETLSTFYPFSGRVK 80 (444)
T ss_pred CeeEEeccceeccCCCCccccccCCCChHHhcccccccceEEEeeCCCcccccchhHHHHHHHHHHHHHhhhhccCcccc
Confidence 7999999999999999986 688999999988789999999999764222 1 3569999999999999999999998
Q ss_pred eCCCCCeEEeccCCCceEEEEEccccccccCCCCCCh-hhhccCCccccC--CCCCCCCeEEEeeeecCCceEEee
Q 031989 76 RDDDGRIEIDCNAEGVLFVEAETTSLIDDFGDFAPTL-ELKQLIPTIDYS--GGISTYPLLVLQVCLYIYLFYCKK 148 (149)
Q Consensus 76 ~~~~g~~~i~cn~~Gv~f~~A~~~~~l~~l~~~~~~~-~~~~l~p~~~~~--~~~~~~pll~vQvT~f~cGg~~~~ 148 (149)
. +++|+|||+||.|+||+++.+++|+.. .++. .+++|+|..+.. ......|+++||||+|.|||++|.
T Consensus 81 ~----~~~i~cn~~Gv~fveA~~~~~l~d~l~-~~~~~~~~~l~p~~~~~~~~~~~~~Pll~vQvT~F~cGG~~lG 151 (444)
T PLN00140 81 D----NLIIDNYEEGVPFFETRVKGSLSDFLK-HPQLELLNKFLPCQPFSYESDPEAIPQVAIQVNTFDCGGIALG 151 (444)
T ss_pred C----CceeEccCCCceEEEEEecCcHHHhcC-CCCHHHHHhhCCCCcccccCCccCCceEEEEEEEeccCcEEEE
Confidence 5 489999999999999999999999865 3443 467888864431 123457999999999999999985
No 6
>PRK09294 acyltransferase PapA5; Provisional
Probab=58.84 E-value=22 Score=29.20 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHhccccccccceeeeeCCCCCeEEecc
Q 031989 51 FDAGVLKDALSKALVPFYPMAGRLKRDDDGRIEIDCN 87 (149)
Q Consensus 51 ~~~~~Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~cn 87 (149)
.+.+.|+++|.+++..++.|..|+...++|.+.+..+
T Consensus 34 lD~~~L~~Al~~l~~rhp~Lr~~~~~~~~~~~~~~~~ 70 (416)
T PRK09294 34 LDIDALSDAFDALLRAHPVLAAHLEQDSDGGWELVAD 70 (416)
T ss_pred CCHHHHHHHHHHHHHhCHHhhEEEEECCCCceEEeeC
Confidence 5799999999999999999999997666676655543
No 7
>PF11631 DUF3255: Protein of unknown function (DUF3255); InterPro: IPR021664 Members in this family of proteins are annotated as YxeF however no function is currently known. The family appears to be restricted to Bacillus. ; PDB: 2JOZ_A.
Probab=42.57 E-value=24 Score=23.89 Aligned_cols=28 Identities=32% Similarity=0.698 Sum_probs=19.8
Q ss_pred hccccccccceeeeeCCCCCeEEeccCC
Q 031989 62 KALVPFYPMAGRLKRDDDGRIEIDCNAE 89 (149)
Q Consensus 62 ~~L~~f~plAGRl~~~~~g~~~i~cn~~ 89 (149)
+-|.+||||-..|++.++|.+...-|++
T Consensus 77 qylg~~~plkstlkrgen~tliw~~~g~ 104 (123)
T PF11631_consen 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQ 104 (123)
T ss_dssp EEESTT-S-EEEEEE-STT-EEEEETTE
T ss_pred EEcCCCcchhhHhhcCCCCcEEEEecCc
Confidence 4588999999999999888887777765
No 8
>PF13092 CENP-L: Kinetochore complex Sim4 subunit Fta1
Probab=41.54 E-value=20 Score=26.10 Aligned_cols=16 Identities=6% Similarity=-0.108 Sum_probs=14.5
Q ss_pred EEeeeecCCceEEeeC
Q 031989 134 VLQVCLYIYLFYCKKS 149 (149)
Q Consensus 134 ~vQvT~f~cGg~~~~~ 149 (149)
.+++++.+||||++.+
T Consensus 137 ~~~L~kI~~~~~~l~~ 152 (162)
T PF13092_consen 137 AVRLSKISCGGFVLGS 152 (162)
T ss_pred eeEEEEEecceeEeec
Confidence 8899999999999873
No 9
>PHA01809 hypothetical protein
Probab=36.77 E-value=29 Score=20.58 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=12.0
Q ss_pred EeeeecCCceEEee
Q 031989 135 LQVCLYIYLFYCKK 148 (149)
Q Consensus 135 vQvT~f~cGg~~~~ 148 (149)
-.|-+|+.|.+|||
T Consensus 11 khvfrfkngslcia 24 (65)
T PHA01809 11 KHVFRFKNGSLCIA 24 (65)
T ss_pred EEEEEecCCcEEEE
Confidence 36789999999997
No 10
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=31.08 E-value=1.2e+02 Score=25.03 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=28.1
Q ss_pred ccEEEEecCCCCCCCcCHHHHHHHHHhccccccccceeeeeC
Q 031989 36 TPSVYFYRPTGAANFFDAGVLKDALSKALVPFYPMAGRLKRD 77 (149)
Q Consensus 36 ~~~v~fy~~~~~~~~~~~~~Lk~sLs~~L~~f~plAGRl~~~ 77 (149)
+...+.++.+ .+.+.|++++.+.+..++.|.-|+...
T Consensus 20 ~~~~~~l~g~-----ld~~~l~~al~~~~~rh~~LR~~~~~~ 56 (446)
T TIGR02946 20 IGALAVFEGP-----LSFEALRALLESRLPLAPRFRQRLREV 56 (446)
T ss_pred EEEEEEEcCC-----ccHHHHHHHHHHhhccCChhhcccccC
Confidence 3344444543 478999999999999999998888654
No 11
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=30.81 E-value=44 Score=28.53 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=21.2
Q ss_pred HHHHhccccccccceeeeeCCCCCeEEeccCCCceEEE
Q 031989 58 DALSKALVPFYPMAGRLKRDDDGRIEIDCNAEGVLFVE 95 (149)
Q Consensus 58 ~sLs~~L~~f~plAGRl~~~~~g~~~i~cn~~Gv~f~~ 95 (149)
+++.++|..|.++.+|+. ..++.+|+.|+-
T Consensus 296 e~i~~~L~~F~gl~HR~e--------~v~~~~gv~f~N 325 (448)
T COG0771 296 EAILEALSSFTGLPHRLE--------FVGEKDGVLFIN 325 (448)
T ss_pred HHHHHHHHhCCCCCcceE--------EEEecCCEEEec
Confidence 458899999999998864 444455555554
No 12
>PF01330 RuvA_N: RuvA N terminal domain; InterPro: IPR013849 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. This entry represents domain I of RuvA, which has an OB-fold structure. This domain forms the RuvA tetramer contacts [].; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJP_A 1D8L_B 1CUK_A 1C7Y_A 1IXR_B 2ZTC_A 2ZTD_B 2H5X_A 2ZTE_A 1BVS_E ....
Probab=28.36 E-value=53 Score=19.55 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=22.8
Q ss_pred ccceeeeeCCCCCeEEeccCCCceEEEEEccccccccC
Q 031989 69 PMAGRLKRDDDGRIEIDCNAEGVLFVEAETTSLIDDFG 106 (149)
Q Consensus 69 plAGRl~~~~~g~~~i~cn~~Gv~f~~A~~~~~l~~l~ 106 (149)
-+-|++.....+.+.|+|| |+-+-.--...++.++.
T Consensus 4 ~l~G~v~~~~~~~vvi~~~--GvGy~v~v~~~~~~~l~ 39 (61)
T PF01330_consen 4 YLKGKVVEKNPDYVVIDVN--GVGYEVFVPSNTLSELP 39 (61)
T ss_dssp EEEEEEEEEESSEEEEEET--TEEEEEEE-HHHHHTS-
T ss_pred EEEEEEEEEcCCEEEEEEC--CEEEEEEeCCchHHhCC
Confidence 3568887777788999999 55555544444455443
No 13
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.33 E-value=39 Score=27.64 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=11.7
Q ss_pred CeEEEeeeecCCce
Q 031989 131 PLLVLQVCLYIYLF 144 (149)
Q Consensus 131 pll~vQvT~f~cGg 144 (149)
-+--||+|.|.||-
T Consensus 273 nlegV~l~SFgCG~ 286 (351)
T COG3580 273 NLEGVQLVSFGCGL 286 (351)
T ss_pred CeeeEEEeecccCc
Confidence 35679999999995
No 14
>COG4288 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=1.8e+02 Score=20.01 Aligned_cols=16 Identities=13% Similarity=-0.103 Sum_probs=11.8
Q ss_pred CCCCeEEEeeeecCCc
Q 031989 128 STYPLLVLQVCLYIYL 143 (149)
Q Consensus 128 ~~~pll~vQvT~f~cG 143 (149)
+..-++.||.|++-.|
T Consensus 94 esnvPvVvQ~tRLDsg 109 (124)
T COG4288 94 ESNVPVVVQLTRLDSG 109 (124)
T ss_pred ecCCceEEEEEEeccC
Confidence 3345688999998766
No 15
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=22.51 E-value=2.2e+02 Score=21.98 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=34.4
Q ss_pred ccccEEEEecCCCCCC-CcCHHHHHHHHHhccccccccceeeeeCC
Q 031989 34 FHTPSVYFYRPTGAAN-FFDAGVLKDALSKALVPFYPMAGRLKRDD 78 (149)
Q Consensus 34 ~~~~~v~fy~~~~~~~-~~~~~~Lk~sLs~~L~~f~plAGRl~~~~ 78 (149)
.++..+.+|+.+.... ....+.|++.+.+.+..+|.|.-|++...
T Consensus 18 mhv~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~p~fr~rv~~~~ 63 (263)
T PF03007_consen 18 MHVGALAIFDPPTDGAPPLDVERLRARLEARLARHPRFRQRVVRVP 63 (263)
T ss_pred ceEEEEEEEEcCCCCCCcchHHHHHHHHHHhhccCCccccceecCC
Confidence 3556788888763222 23689999999999999999999987753
No 16
>PRK02801 primosomal replication protein N; Provisional
Probab=21.88 E-value=98 Score=20.52 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=14.7
Q ss_pred ccceeeeeCCCCCeEEeccCCCceEEE
Q 031989 69 PMAGRLKRDDDGRIEIDCNAEGVLFVE 95 (149)
Q Consensus 69 plAGRl~~~~~g~~~i~cn~~Gv~f~~ 95 (149)
.|.|||..+ +++.+..+|...+.
T Consensus 6 ~L~Grl~~d----pelr~Tp~G~~v~~ 28 (101)
T PRK02801 6 VLSGTVCRT----PKRKVSPSGIPHCQ 28 (101)
T ss_pred EEEEEECcC----cceEECCCCCeEEE
Confidence 478999876 56666666654433
Done!