Query 031989
Match_columns 149
No_of_seqs 109 out of 1085
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 12:53:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ja1 c.43.1.2 (A:1-175) Pol 45.7 23 0.0017 22.3 5.6 57 24-85 10-68 (175)
2 d2joza1 b.60.1.1 (A:2-127) Hyp 37.0 12 0.00088 22.8 2.6 29 62-90 77-105 (126)
3 d1zq1c3 d.128.1.5 (C:5-276,C:4 28.2 23 0.0017 25.9 3.4 21 81-101 171-191 (321)
4 d2d6fc3 d.128.1.5 (C:1-270,C:3 23.4 31 0.0022 25.1 3.4 20 82-101 171-190 (319)
5 d2f2ab2 d.128.1.5 (B:4-293) As 23.1 35 0.0026 24.5 3.6 20 82-101 134-153 (290)
6 d1bvsa3 b.40.4.2 (A:1-63) DNA 20.5 20 0.0015 19.4 1.4 22 69-90 4-25 (63)
7 d1f7la_ d.150.1.2 (A:) Holo-(a 20.2 86 0.0063 18.7 5.0 36 54-89 54-94 (118)
8 d1g2ra_ d.192.1.1 (A:) Hypothe 19.2 35 0.0026 20.0 2.4 22 73-94 22-47 (94)
9 d1cuka3 b.40.4.2 (A:1-64) DNA 19.0 29 0.0021 18.8 1.8 36 68-105 3-38 (64)
10 d1ixra2 b.40.4.2 (A:1-62) DNA 16.1 33 0.0024 18.4 1.6 35 69-105 4-38 (62)
No 1
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.74 E-value=23 Score=22.25 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCcCcCCCCC--ccccEEEEecCCCCCCCcCHHHHHHHHHhccccccccceeeeeCCCCCeEEe
Q 031989 24 NANVDLVVPR--FHTPSVYFYRPTGAANFFDAGVLKDALSKALVPFYPMAGRLKRDDDGRIEID 85 (149)
Q Consensus 24 LS~lD~~~~~--~~~~~v~fy~~~~~~~~~~~~~Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~ 85 (149)
|+..++.... .++...+-.+.+ .++++|++++..++..++.|-.+++.+++|.++..
T Consensus 10 l~~~e~~~~~~~~~~~~~~~l~g~-----ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~ 68 (175)
T d1q9ja1 10 LSHSEEVFAQYEVFTSMTIQLRGV-----IDVDALSDAFDALLETHPVLASHLEQSSDGGWNLV 68 (175)
T ss_dssp CCHHHHHHHHTTCEEEEEEEEESC-----CCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEE
T ss_pred hCHHhhhcccCceEEEEEEEEcCC-----CCHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEE
Confidence 6666665432 233333333333 57999999999999999999999988876655443
No 2
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=36.96 E-value=12 Score=22.75 Aligned_cols=29 Identities=31% Similarity=0.662 Sum_probs=24.4
Q ss_pred hccccccccceeeeeCCCCCeEEeccCCC
Q 031989 62 KALVPFYPMAGRLKRDDDGRIEIDCNAEG 90 (149)
Q Consensus 62 ~~L~~f~plAGRl~~~~~g~~~i~cn~~G 90 (149)
+-|.+|||+-..|++.++|.+...-|++-
T Consensus 77 ~ylg~~~p~kstlkrg~n~tliw~~~g~~ 105 (126)
T d2joza1 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQR 105 (126)
T ss_dssp EEESTTCSCEEEEEECSTTCEEEEETTEE
T ss_pred EEcCCCcchhhHHhCCCCCcEEEEecCce
Confidence 46889999999999999888888877654
No 3
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=28.21 E-value=23 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=15.6
Q ss_pred CeEEeccCCCceEEEEEcccc
Q 031989 81 RIEIDCNAEGVLFVEAETTSL 101 (149)
Q Consensus 81 ~~~i~cn~~Gv~f~~A~~~~~ 101 (149)
...++.|-+|++++|=.+.-+
T Consensus 171 ~~lvD~NRaGvPLiEIVTePd 191 (321)
T d1zq1c3 171 EVIYRLDRLGIPLIEISTTPD 191 (321)
T ss_dssp EEEEESTTTTCEEEEEECCTT
T ss_pred ceEEeecccCcceEEEecccc
Confidence 345688889999999776543
No 4
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.40 E-value=31 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=14.9
Q ss_pred eEEeccCCCceEEEEEcccc
Q 031989 82 IEIDCNAEGVLFVEAETTSL 101 (149)
Q Consensus 82 ~~i~cn~~Gv~f~~A~~~~~ 101 (149)
.-++.|-+|++++|=.++-+
T Consensus 171 ~~vD~NRaGvPLiEIVTePd 190 (319)
T d2d6fc3 171 VVFRLDRLGIPLVEITTDPS 190 (319)
T ss_dssp EEEETTSTTCEEEEEECCSC
T ss_pred eEecccccCceeEEEEeecc
Confidence 35688889999998776543
No 5
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=23.05 E-value=35 Score=24.48 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=14.9
Q ss_pred eEEeccCCCceEEEEEcccc
Q 031989 82 IEIDCNAEGVLFVEAETTSL 101 (149)
Q Consensus 82 ~~i~cn~~Gv~f~~A~~~~~ 101 (149)
-.|+.|-.|++++|=.++-+
T Consensus 134 slvD~NRaGvPLiEIVTePd 153 (290)
T d2f2ab2 134 SLVDLNRQGTPLIEIVSEPD 153 (290)
T ss_dssp EEEECSSTTCEEEEEEECTT
T ss_pred cEEeeccCCCceeeeeccCC
Confidence 34678889999999776543
No 6
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=20.54 E-value=20 Score=19.41 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=17.7
Q ss_pred ccceeeeeCCCCCeEEeccCCC
Q 031989 69 PMAGRLKRDDDGRIEIDCNAEG 90 (149)
Q Consensus 69 plAGRl~~~~~g~~~i~cn~~G 90 (149)
.+.|++...+.+.+.|+||+=|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvG 25 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIG 25 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEE
T ss_pred EEEEEEEEECCCEEEEEECCEE
Confidence 4689998888889999997544
No 7
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=20.21 E-value=86 Score=18.66 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=20.0
Q ss_pred HHHHHHHHhccccc-----cccceeeeeCCCCCeEEeccCC
Q 031989 54 GVLKDALSKALVPF-----YPMAGRLKRDDDGRIEIDCNAE 89 (149)
Q Consensus 54 ~~Lk~sLs~~L~~f-----~plAGRl~~~~~g~~~i~cn~~ 89 (149)
=+.|+|+.++|..- ++--=.+..+++|++.+.+++.
T Consensus 54 fAaKEA~~Kalg~g~~~~~~~~dieI~~~~~G~P~~~~~~~ 94 (118)
T d1f7la_ 54 FAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKL 94 (118)
T ss_dssp HHHHHHHHHHHTSCSBTTBCGGGCEEEECTTSCEEEEETTT
T ss_pred HHHHHHHHHhcccCCCCCCcccEEEEEECCCCCcEEEecCC
Confidence 36899999998541 1112233334456666665543
No 8
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=19.18 E-value=35 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=16.9
Q ss_pred eeeeCCCCCeEEecc----CCCceEE
Q 031989 73 RLKRDDDGRIEIDCN----AEGVLFV 94 (149)
Q Consensus 73 Rl~~~~~g~~~i~cn----~~Gv~f~ 94 (149)
|++.+++|.+.+|.+ +.|+++.
T Consensus 22 R~v~~~dg~v~~D~~~k~~GRGayl~ 47 (94)
T d1g2ra_ 22 RIVKNKEGQVFIDPTGKANGRGAYIK 47 (94)
T ss_dssp EEEECTTSCEEEETTSCCCSEEEEEE
T ss_pred EEEecCCCcEEEcCCCCCCCCEEEEC
Confidence 788888999999875 4577664
No 9
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.96 E-value=29 Score=18.81 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=24.2
Q ss_pred cccceeeeeCCCCCeEEeccCCCceEEEEEcccccccc
Q 031989 68 YPMAGRLKRDDDGRIEIDCNAEGVLFVEAETTSLIDDF 105 (149)
Q Consensus 68 ~plAGRl~~~~~g~~~i~cn~~Gv~f~~A~~~~~l~~l 105 (149)
..+.|.+...+.+.+.|+|| ||-+-+-....+++.+
T Consensus 3 ~~l~G~l~~~~~~~ivi~v~--GvGY~v~v~~~~~~~l 38 (64)
T d1cuka3 3 GRLRGIIIEKQPPLVLIEVG--GVGYEVHMPMTCFYEL 38 (64)
T ss_dssp CEEEEEEEEEETTEEEEEET--TEEEEEECCHHHHTTC
T ss_pred eEEEEEEEEEcCCEEEEEEC--CEEEEEEEChHHHhhc
Confidence 34678888777788999997 6656554444444444
No 10
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=16.14 E-value=33 Score=18.39 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=23.6
Q ss_pred ccceeeeeCCCCCeEEeccCCCceEEEEEcccccccc
Q 031989 69 PMAGRLKRDDDGRIEIDCNAEGVLFVEAETTSLIDDF 105 (149)
Q Consensus 69 plAGRl~~~~~g~~~i~cn~~Gv~f~~A~~~~~l~~l 105 (149)
.+.|++...+.+.+.|+|| ||-+-.--+..+++.+
T Consensus 4 ~i~G~i~~~~~~~ivi~~~--GvGY~v~v~~~~~~~l 38 (62)
T d1ixra2 4 YLRGLVLKKEAGGFVLLAG--GVGFFLQAPTPFLQAL 38 (62)
T ss_dssp EEEEEEEEECSSEEEEECS--SEEEEEECCHHHHHHC
T ss_pred EEEEEEEEEcCCEEEEEEC--CEEEEEEECHHHHhhc
Confidence 4679998888888999997 5555444444444444
Done!