BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031993
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RAY|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
           Domain- Containing Protein 11
          Length = 237

 Score = 27.7 bits (60), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 85  LTDPSPEHCPPGEFIREIPLPTRIPDDAKL------EAYGDETGTG----LEIMVPK-HR 133
             D  P H PP  F+ + P+P  IPD A L      E   D +G      +  ++PK H 
Sbjct: 40  FVDECPNHGPP-VFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHI 98

Query: 134 VGPEEHEV 141
            GP E ++
Sbjct: 99  FGPYEGQI 106


>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
          Length = 600

 Score = 27.7 bits (60), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 101 EIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVGP 136
           E+  P   PD+A L  Y +E    + I+ PK  VGP
Sbjct: 386 EVRNPXDFPDNAGLIEYVEEPFVLVTIITPKEYVGP 421


>pdb|4B8T|A Chain A, Rna Binding Protein Solution Structure Of The Third Kh
           Domain Of Ksrp In Complex With The G-rich Target
           Sequence
          Length = 106

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 116 AYGDETGTGLEIMVPKHRVG 135
           AYG   G G+++ VP+H VG
Sbjct: 4   AYGSRIGGGIDVPVPRHSVG 23


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,959,782
Number of Sequences: 62578
Number of extensions: 200303
Number of successful extensions: 425
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 6
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)