BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031993
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2AGX3|PRD11_MOUSE PR domain-containing protein 11 OS=Mus musculus GN=Prdm11 PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 85 LTDPSPEHCPPGEFIREIPLPTRIPDDAKL----------EAYGDETGTGLEIMVPK-HR 133
D P H PP F+ + P+P IPD A L +A G+ + ++PK H
Sbjct: 83 FVDECPNHGPP-VFVSDTPVPVGIPDRAALTIPQGMEVVKDAGGESDVRCINEVIPKGHI 141
Query: 134 VGPEEHEV 141
GP E ++
Sbjct: 142 FGPYEGQI 149
>sp|O70306|TBX15_MOUSE T-box transcription factor TBX15 OS=Mus musculus GN=Tbx15 PE=2 SV=2
Length = 602
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 82 TFKLTDPS----PEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGT 123
T T PS P+ P I IP P +P ++K+EAYG + G+
Sbjct: 428 TASATQPSETFMPQRTP--SLISGIPTPPSLPSNSKMEAYGGQLGS 471
>sp|Q9NQV5|PRD11_HUMAN PR domain-containing protein 11 OS=Homo sapiens GN=PRDM11 PE=1 SV=2
Length = 511
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 85 LTDPSPEHCPPGEFIREIPLPTRIPDDAKL------EAYGDETGTG----LEIMVPK-HR 133
D P H PP F+ + P+P IPD A L E D +G + ++PK H
Sbjct: 117 FVDECPNHGPP-VFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHI 175
Query: 134 VGPEEHEV 141
GP E ++
Sbjct: 176 FGPYEGQI 183
>sp|Q96SF7|TBX15_HUMAN T-box transcription factor TBX15 OS=Homo sapiens GN=TBX15 PE=2 SV=2
Length = 602
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 82 TFKLTDPS----PEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGT 123
T T PS P+ P I IP P +P ++K+EAYG + G+
Sbjct: 428 TTSATQPSETFMPQRTP--SLISGIPTPPSLPGNSKMEAYGGQLGS 471
>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1
Length = 317
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 9 LHEFTGVMRNVYGPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSL 68
L EF RN++ P+ A + D++ Y I ++P LKR+++ + T GV+KI S
Sbjct: 159 LREFC---RNMH-PLDVASVVSHDDEAYAIANTMP--KLKRLEIAYHRVSTEGVLKILSC 212
Query: 69 ST 70
Sbjct: 213 CV 214
>sp|P0CN82|GLGB_CRYNJ 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=GLC3 PE=3 SV=1
Length = 682
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 7 PWLHEFTGVMRNVYGPVTAAKTIYEDEQGYLIIISLPFADL 47
PWL F+G +R Y +TI E+ +G L S + +
Sbjct: 17 PWLEPFSGALRERYAAYQKQRTIIEEHEGGLAEFSKGYKSM 57
>sp|P0CN83|GLGB_CRYNB 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=GLC3 PE=3
SV=1
Length = 682
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 7 PWLHEFTGVMRNVYGPVTAAKTIYEDEQGYLIIISLPFADL 47
PWL F+G +R Y +TI E+ +G L S + +
Sbjct: 17 PWLEPFSGALRERYAAYQKQRTIIEEHEGGLAEFSKGYKSM 57
>sp|Q54WD7|Y9719_DICDI Probable serine/threonine-protein kinase DDB_G0279719
OS=Dictyostelium discoideum GN=DDB_G0279719 PE=2 SV=1
Length = 942
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 45 ADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104
AD+K+ K+TWW T+ K T C + + DPS P + +
Sbjct: 369 ADVKKTKMTWWK--TYKSSKKDKKQTICSNACESFSNSTFFNDPSSHSQPQHQQLHSS-- 424
Query: 105 PTRIPDDAKLE 115
P ++P +L+
Sbjct: 425 PQQLPQSPRLK 435
>sp|Q5RD88|KDM4A_PONAB Lysine-specific demethylase 4A OS=Pongo abelii GN=KDM4A PE=2 SV=1
Length = 1064
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 86 TDPSPEHCPPGEFIREIPLPTR------IPDDAKLEAYGDETGTGLEIMVPKHRVGPEEH 139
T P+PE EF++E LP R P+D +E D L+ + KHR+G + H
Sbjct: 344 TLPTPE---AAEFLKESELPPRAGNEEECPED-DMEGVEDGEEGDLKTSLAKHRIGTKRH 399
Query: 140 EV 141
V
Sbjct: 400 RV 401
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,834,346
Number of Sequences: 539616
Number of extensions: 2552622
Number of successful extensions: 5149
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5147
Number of HSP's gapped (non-prelim): 10
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)