Query 031993
Match_columns 149
No_of_seqs 23 out of 25
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 08:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06464 ACD_sHsps-like Alpha-c 99.4 2.3E-12 4.9E-17 82.8 6.6 88 28-131 1-88 (88)
2 PF00011 HSP20: Hsp20/alpha cr 99.0 2.6E-08 5.6E-13 67.5 12.3 93 28-137 1-93 (102)
3 cd06471 ACD_LpsHSP_like Group 98.9 2.8E-08 6E-13 67.4 9.5 92 26-131 2-93 (93)
4 cd06472 ACD_ScHsp26_like Alpha 98.9 3.7E-08 8E-13 67.3 9.8 91 27-131 2-92 (92)
5 cd06497 ACD_alphaA-crystallin_ 98.5 1.9E-06 4.1E-11 59.9 9.6 83 28-131 4-86 (86)
6 cd06475 ACD_HspB1_like Alpha c 98.4 5.2E-06 1.1E-10 57.7 9.6 85 25-130 1-85 (86)
7 cd00298 ACD_sHsps_p23-like Thi 98.4 5.9E-06 1.3E-10 50.0 8.4 80 29-131 1-80 (80)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 98.3 8.6E-06 1.9E-10 56.0 9.3 82 29-131 2-83 (83)
9 cd06526 metazoan_ACD Alpha-cry 98.2 1E-05 2.2E-10 54.5 8.0 79 32-131 5-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 98.2 2.5E-05 5.4E-10 54.2 9.5 83 29-132 2-84 (84)
11 PRK11597 heat shock chaperone 98.2 4.2E-05 9.1E-10 58.6 11.5 107 22-147 30-138 (142)
12 PRK10743 heat shock protein Ib 98.2 2.6E-05 5.7E-10 58.9 9.7 88 26-132 36-124 (137)
13 cd06470 ACD_IbpA-B_like Alpha- 98.1 4.4E-05 9.5E-10 52.6 9.7 88 26-131 2-90 (90)
14 COG0071 IbpA Molecular chapero 98.0 5.2E-05 1.1E-09 56.1 9.1 92 24-134 40-135 (146)
15 cd06476 ACD_HspB2_like Alpha c 97.9 0.00011 2.5E-09 51.1 8.8 80 31-131 4-83 (83)
16 cd06479 ACD_HspB7_like Alpha c 97.7 0.0002 4.4E-09 49.9 7.4 80 28-131 2-81 (81)
17 cd06482 ACD_HspB10 Alpha cryst 97.4 0.00083 1.8E-08 47.6 7.3 82 31-130 5-86 (87)
18 cd06477 ACD_HspB3_Like Alpha c 97.4 0.0023 5E-08 44.9 9.1 79 31-130 4-82 (83)
19 cd06481 ACD_HspB9_like Alpha c 97.2 0.0039 8.5E-08 43.4 8.5 83 31-130 4-86 (87)
20 cd06469 p23_DYX1C1_like p23_li 96.5 0.045 9.7E-07 35.3 8.5 69 30-133 2-70 (78)
21 KOG0710 Molecular chaperone (s 95.9 0.027 5.9E-07 44.5 6.4 102 20-139 80-187 (196)
22 cd06463 p23_like Proteins cont 95.9 0.13 2.9E-06 32.1 8.4 75 30-134 2-76 (84)
23 cd06480 ACD_HspB8_like Alpha-c 94.8 0.2 4.4E-06 36.0 7.2 89 21-130 2-90 (91)
24 cd06466 p23_CS_SGT1_like p23_l 88.1 4.4 9.6E-05 26.1 7.0 74 30-133 3-76 (84)
25 PF07494 Reg_prop: Two compone 74.0 2.5 5.3E-05 23.5 1.5 16 26-41 7-22 (24)
26 PF03476 MOSC_N: MOSC N-termin 66.1 13 0.00027 26.9 4.2 43 78-130 32-74 (120)
27 PF15232 DUF4585: Domain of un 57.6 23 0.00049 25.9 4.2 42 84-135 10-52 (75)
28 smart00559 Ku78 Ku70 and Ku80 56.9 14 0.0003 27.4 3.2 35 14-48 93-129 (140)
29 KOG4680 Uncharacterized conser 52.1 16 0.00035 29.8 3.0 51 74-126 80-136 (153)
30 PF12859 Apc1: Anaphase-promot 49.6 78 0.0017 22.6 5.9 60 28-94 12-100 (105)
31 cd02859 AMPKbeta_GBD_like AMP- 38.2 1.2E+02 0.0027 20.3 6.3 73 48-127 2-77 (79)
32 cd07828 nitrobindin nitrobindi 37.6 89 0.0019 23.7 4.9 73 28-108 54-135 (148)
33 KOG3591 Alpha crystallins [Pos 34.3 2.4E+02 0.0051 22.4 10.4 99 22-144 60-162 (173)
34 PF11795 DUF3322: Uncharacteri 33.9 16 0.00035 28.5 0.4 25 83-107 148-172 (190)
35 PF06554 Olfactory_mark: Olfac 32.9 92 0.002 25.4 4.5 53 41-101 44-98 (151)
36 PF14930 Qn_am_d_aII: Quinohem 31.0 1.4E+02 0.0031 22.8 5.1 49 21-69 18-77 (108)
37 PRK06749 replicative DNA helic 30.7 46 0.00099 29.2 2.7 42 105-147 369-419 (428)
38 PF03633 Glyco_hydro_65C: Glyc 30.4 80 0.0017 19.7 3.1 37 49-86 11-53 (54)
39 PF08768 DUF1794: Domain of un 30.3 1.4E+02 0.0031 22.6 5.0 59 29-87 59-126 (154)
40 PF05472 Ter: DNA replication 29.4 42 0.00091 28.2 2.2 20 45-66 151-170 (290)
41 PF08381 BRX: Transcription fa 29.3 64 0.0014 22.5 2.7 26 28-53 6-34 (59)
42 PF04516 CP2: CP2 transcriptio 28.7 57 0.0012 27.6 2.9 29 43-71 141-171 (236)
43 PRK06904 replicative DNA helic 27.8 59 0.0013 29.0 2.9 42 105-147 403-454 (472)
44 cd04711 BAH_Dnmt1_II BAH, or B 27.5 57 0.0012 25.9 2.5 27 115-143 25-52 (137)
45 PRK05636 replicative DNA helic 26.6 62 0.0013 29.3 2.9 41 105-146 444-493 (505)
46 PF02735 Ku: Ku70/Ku80 beta-ba 26.5 87 0.0019 23.9 3.3 36 14-49 140-178 (200)
47 PF12892 FctA: T surface-antig 26.4 1.8E+02 0.0039 18.6 4.9 40 47-87 48-87 (88)
48 PRK10972 Z-ring-associated pro 25.9 30 0.00065 26.1 0.7 16 76-97 8-23 (109)
49 PF09118 DUF1929: Domain of un 25.3 1.1E+02 0.0024 22.0 3.4 72 33-113 14-94 (98)
50 PF07040 DUF1326: Protein of u 25.3 2E+02 0.0043 23.1 5.2 78 7-88 89-182 (184)
51 PRK06321 replicative DNA helic 25.1 1.1E+02 0.0024 27.4 4.1 42 105-147 408-457 (472)
52 cd01806 Nedd8 Nebb8-like ubiq 25.0 95 0.0021 19.5 2.8 38 91-130 34-72 (76)
53 cd06490 p23_NCB5OR p23_like do 23.9 1.4E+02 0.0031 20.4 3.7 35 97-133 45-79 (87)
54 cd00220 VMO-I Vitelline membra 23.8 48 0.001 26.4 1.5 18 89-106 16-33 (177)
55 PRK08006 replicative DNA helic 23.5 75 0.0016 28.4 2.7 41 104-145 404-453 (471)
56 PF10264 Stork_head: Winged he 23.1 25 0.00053 25.6 -0.3 26 15-40 53-78 (80)
57 PF08190 PIH1: pre-RNA process 23.0 4E+02 0.0086 21.3 8.5 45 79-130 283-327 (328)
58 PLN02724 Molybdenum cofactor s 22.9 2.1E+02 0.0045 27.0 5.6 40 78-127 547-586 (805)
59 PF12961 DUF3850: Domain of Un 22.9 32 0.00069 24.6 0.3 19 70-88 15-34 (72)
60 PF08750 CNP1: CNP1-like famil 22.3 1.1E+02 0.0024 23.9 3.1 31 101-132 12-43 (139)
61 PF10976 DUF2790: Protein of u 22.1 89 0.0019 22.3 2.4 23 18-41 46-68 (78)
62 PF02991 Atg8: Autophagy prote 22.1 39 0.00084 25.0 0.6 11 30-40 86-96 (104)
63 PHA03131 dUTPase; Provisional 21.3 1.4E+02 0.0031 25.5 3.9 49 60-108 190-241 (286)
64 COG0664 Crp cAMP-binding prote 21.0 1.4E+02 0.003 20.9 3.2 53 59-126 48-100 (214)
65 cd08166 MPP_Cdc1_like_1 unchar 20.8 59 0.0013 26.3 1.4 30 106-135 163-195 (195)
66 PF15283 DUF4595: Domain of un 20.7 4E+02 0.0087 20.6 6.0 80 32-120 79-159 (197)
67 PHA02542 41 41 helicase; Provi 20.6 70 0.0015 28.7 2.0 33 105-138 371-409 (473)
68 PF00970 FAD_binding_6: Oxidor 20.5 1.1E+02 0.0024 20.1 2.5 50 83-135 19-73 (99)
69 cd07422 MPP_ApaH Escherichia c 20.1 1E+02 0.0023 25.5 2.8 59 53-114 160-221 (257)
70 PF03762 VOMI: Vitelline membr 20.1 39 0.00085 27.1 0.3 16 90-105 16-31 (176)
No 1
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.36 E-value=2.3e-12 Score=82.84 Aligned_cols=88 Identities=27% Similarity=0.378 Sum_probs=75.0
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~tr 107 (149)
.|+|++++|.|.+.||+++.+.++|++.+ +.+.|++.......... ......|..|+|.|+|+||..
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~----~~l~I~g~~~~~~~~~~---------~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED----GVLTISGEREEEEEEEE---------NYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC----CEEEEEEEEecccccCC---------cEEEEEEeCcEEEEEEECCCC
Confidence 47999999999999999999999999997 88999988776555433 223456788999999999999
Q ss_pred CCCcccceeeecCCCceEEEeeec
Q 031993 108 IPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 108 IPedA~leAy~de~g~~LEi~VpK 131 (149)
+-.+ ++.|.|+. | +|+|.+||
T Consensus 68 vd~~-~i~a~~~~-G-~L~I~~pk 88 (88)
T cd06464 68 VDPD-KIKASLEN-G-VLTITLPK 88 (88)
T ss_pred cCHH-HcEEEEeC-C-EEEEEEcC
Confidence 9887 89999999 5 59999997
No 2
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=98.98 E-value=2.6e-08 Score=67.52 Aligned_cols=93 Identities=31% Similarity=0.428 Sum_probs=68.3
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~tr 107 (149)
+|+|+++.|+|.+.||.++.+.++|+-. ++.+.|++--. .....++.+.- -...|.|.|+|+||..
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~----~~~L~I~g~~~----~~~~~~~~~~~------~~~~~~f~r~~~lP~~ 66 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD----DNKLVISGKRK----EEEEDDRYYRS------ERRYGSFERSIRLPED 66 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE----TTEEEEEEEEE----GEECTTCEEEE-------S-SEEEEEEEE-STT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe----cCccceeceee----eeeeeeeeeec------ccccceEEEEEcCCCc
Confidence 5899999999999999999999999876 46788988766 33333333332 2467999999999987
Q ss_pred CCCcccceeeecCCCceEEEeeecCcCCCc
Q 031993 108 IPDDAKLEAYGDETGTGLEIMVPKHRVGPE 137 (149)
Q Consensus 108 IPedA~leAy~de~g~~LEi~VpK~r~gpE 137 (149)
+ +-.+++|-| +.| +|.|.+||......
T Consensus 67 v-d~~~i~a~~-~~G-vL~I~~pk~~~~~~ 93 (102)
T PF00011_consen 67 V-DPDKIKASY-ENG-VLTITIPKKEEEED 93 (102)
T ss_dssp B--GGG-EEEE-TTS-EEEEEEEBSSSCTT
T ss_pred C-CcceEEEEe-cCC-EEEEEEEccccccC
Confidence 7 456789999 777 69999999977654
No 3
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=98.88 E-value=2.8e-08 Score=67.43 Aligned_cols=92 Identities=22% Similarity=0.352 Sum_probs=65.5
Q ss_pred eeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCC
Q 031993 26 AKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLP 105 (149)
Q Consensus 26 AktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~ 105 (149)
+.+|+|++++|.|.+.||+++.+.++|+.. .+.+.|++-......--..+.+... .-..-|.|.|.|+||
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~----~~~L~I~g~~~~~~~~~~~~~~~~~------~e~~~g~f~r~~~lp 71 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK----DGYLTISAKRDESKDEKDKKGNYIR------RERYYGSFSRSFYLP 71 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEccccccccccCCEEE------EeeeccEEEEEEECC
Confidence 468999999999999999999999999886 4688888876542211001111111 012569999999999
Q ss_pred CCCCCcccceeeecCCCceEEEeeec
Q 031993 106 TRIPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 106 trIPedA~leAy~de~g~~LEi~VpK 131 (149)
.+=. .++.|-|+ .| +|+|-+||
T Consensus 72 -~v~~-~~i~A~~~-dG-vL~I~lPK 93 (93)
T cd06471 72 -NVDE-EEIKAKYE-NG-VLKITLPK 93 (93)
T ss_pred -CCCH-HHCEEEEE-CC-EEEEEEcC
Confidence 4422 34899994 45 69999998
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.87 E-value=3.7e-08 Score=67.29 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=66.7
Q ss_pred eeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCC
Q 031993 27 KTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPT 106 (149)
Q Consensus 27 ktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~t 106 (149)
.+|||+++.|.|.+.||.++.+.++|+..|. +.+.|++-...-.. ..+++.... | ..-|.|.|+|+||.
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~---~~L~I~g~~~~~~~--~~~~~~~~~-----e-~~~g~f~r~i~LP~ 70 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDG---RVLRISGERKKEEE--KKGDDWHRV-----E-RSSGRFVRRFRLPE 70 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCC---CEEEEEEEeccccc--ccCCCEEEE-----E-EeccEEEEEEECCC
Confidence 4799999999999999999999999988632 57889886542211 112222211 1 24699999999999
Q ss_pred CCCCcccceeeecCCCceEEEeeec
Q 031993 107 RIPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 107 rIPedA~leAy~de~g~~LEi~VpK 131 (149)
.+-.+ +++|-|+. -+|+|-+||
T Consensus 71 ~v~~~-~i~A~~~n--GvL~I~lPK 92 (92)
T cd06472 71 NADAD-EVKAFLEN--GVLTVTVPK 92 (92)
T ss_pred CCCHH-HCEEEEEC--CEEEEEecC
Confidence 88443 57788864 469999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.50 E-value=1.9e-06 Score=59.86 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=63.6
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~tr 107 (149)
.|+|++++|.|.+-||.++.+.++|+-. +|.+.|++-.... + .+..|-.. ||.|.|.||..
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~----~-~~~~~~~~----------ef~R~~~LP~~ 64 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL----DDYVEIHGKHSER----Q-DDHGYISR----------EFHRRYRLPSN 64 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEcce----e-CCCCEEEE----------EEEEEEECCCC
Confidence 5899999999999999999999999776 5789999853221 1 11222211 59999999887
Q ss_pred CCCcccceeeecCCCceEEEeeec
Q 031993 108 IPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 108 IPedA~leAy~de~g~~LEi~VpK 131 (149)
+-.| +++|-|.+.|- |.|-+||
T Consensus 65 Vd~~-~i~A~~~~dGv-L~I~~PK 86 (86)
T cd06497 65 VDQS-AITCSLSADGM-LTFSGPK 86 (86)
T ss_pred CChH-HeEEEeCCCCE-EEEEecC
Confidence 7543 58999977775 9999998
No 6
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.39 E-value=5.2e-06 Score=57.66 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=65.4
Q ss_pred eeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 25 AAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 25 aAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
+|-.|||++++|.|.+-||.++.+.++|+=. .+.+.|++-..... .+..|- + ++|.|.|.|
T Consensus 1 ~~~~i~e~~~~~~v~~dlPG~~~edi~V~v~----~~~L~I~g~~~~~~-----~~~~~~--------~--~~f~R~f~L 61 (86)
T cd06475 1 GMSEIRQTADRWKVSLDVNHFAPEELVVKTK----DGVVEITGKHEEKQ-----DEHGFV--------S--RCFTRKYTL 61 (86)
T ss_pred CcceEEEcCCeEEEEEECCCCCHHHEEEEEE----CCEEEEEEEECcCc-----CCCCEE--------E--EEEEEEEEC
Confidence 4668999999999999999999999999875 46888888653221 112221 1 389999999
Q ss_pred CCCCCCcccceeeecCCCceEEEeee
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~Vp 130 (149)
|..|-. .+++|=|++.|- |.|.+|
T Consensus 62 P~~vd~-~~v~A~~~~dGv-L~I~lP 85 (86)
T cd06475 62 PPGVDP-TAVTSSLSPDGI-LTVEAP 85 (86)
T ss_pred CCCCCH-HHcEEEECCCCe-EEEEec
Confidence 988854 478898887775 999887
No 7
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.36 E-value=5.9e-06 Score=49.97 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=65.6
Q ss_pred eeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCC
Q 031993 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRI 108 (149)
Q Consensus 29 IyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trI 108 (149)
.++.++.|.|.|.||.+..+.++|.-.+ +.+.|++....... ..++.+.|.+++.||..|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~----~~l~v~~~~~~~~~----------------~~~~~~~~~~~~~L~~~i 60 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED----NVLTISGKREEEEE----------------RERSYGEFERSFELPEDV 60 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC----CEEEEEEEEcCCCc----------------ceEeeeeEEEEEECCCCc
Confidence 3688899999999999999999998875 67888876554444 456789999999999999
Q ss_pred CCcccceeeecCCCceEEEeeec
Q 031993 109 PDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 109 PedA~leAy~de~g~~LEi~VpK 131 (149)
-.+ ++.|-++. ..|+|.+||
T Consensus 61 ~~~-~~~~~~~~--~~l~i~l~K 80 (80)
T cd00298 61 DPE-KSKASLEN--GVLEITLPK 80 (80)
T ss_pred CHH-HCEEEEEC--CEEEEEEcC
Confidence 877 67777776 559999987
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.31 E-value=8.6e-06 Score=55.96 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=61.2
Q ss_pred eeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCC
Q 031993 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRI 108 (149)
Q Consensus 29 IyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trI 108 (149)
|.+++++|.|.+-||.++.+.++|+=. ++.+.|++-.... ..+..|- | -||.|.|+||..+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~~-----~~~~~~~--------~--~ef~R~~~LP~~v 62 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVL----GDFVEIHGKHEER-----QDEHGFI--------S--REFHRRYRLPPGV 62 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEceE-----cCCCCEE--------E--EEEEEEEECCCCc
Confidence 679999999999999999999999766 4788898853321 1111121 1 1599999998876
Q ss_pred CCcccceeeecCCCceEEEeeec
Q 031993 109 PDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 109 PedA~leAy~de~g~~LEi~VpK 131 (149)
-.| ++.|-|.+.|- |.|-+||
T Consensus 63 d~~-~i~A~~~~dGv-L~I~~PK 83 (83)
T cd06478 63 DPA-AITSSLSADGV-LTISGPR 83 (83)
T ss_pred ChH-HeEEEECCCCE-EEEEecC
Confidence 443 57888877775 9999997
No 9
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.23 E-value=1e-05 Score=54.48 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=60.9
Q ss_pred cCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCCc
Q 031993 32 DEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDD 111 (149)
Q Consensus 32 de~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPed 111 (149)
+.++|.+.+-||.+..+.++|+-.| +.+.|++-...... +..+ --|+|.|+|+||..+=.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~----~~L~I~g~~~~~~~-----~~~~----------~~~~f~r~~~LP~~vd~- 64 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSD----NKLVVEGKHEERED-----EHGY----------VSREFTRRYQLPEGVDP- 64 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEEC----CEEEEEEEEeeecc-----CCCE----------EEEEEEEEEECCCCCCh-
Confidence 3469999999999999999998875 78999987655433 1112 12899999999988744
Q ss_pred ccceeeecCCCceEEEeeec
Q 031993 112 AKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 112 A~leAy~de~g~~LEi~VpK 131 (149)
.++.|.|+..| +|+|-+||
T Consensus 65 ~~i~A~~~~~G-vL~I~~Pk 83 (83)
T cd06526 65 DSVTSSLSSDG-VLTIEAPK 83 (83)
T ss_pred HHeEEEeCCCc-EEEEEecC
Confidence 45789998755 49999997
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=98.19 E-value=2.5e-05 Score=54.17 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=63.6
Q ss_pred eeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCC
Q 031993 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRI 108 (149)
Q Consensus 29 IyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trI 108 (149)
+++++++|.+.+-||.++...++|+-. ++.+.|++-..... .+..|- -++|.|.|.||..+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~~-----~~~~~~----------~~eF~R~~~LP~~v 62 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL----GDFIEIHGKHEERQ-----DEHGFI----------SREFQRKYRIPADV 62 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEccee-----CCCCEE----------EEEEEEEEECCCCC
Confidence 578999999999999999999999866 56888988532111 111121 13699999999988
Q ss_pred CCcccceeeecCCCceEEEeeecC
Q 031993 109 PDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 109 PedA~leAy~de~g~~LEi~VpK~ 132 (149)
-. .+++|-|+..|- |.|-+||.
T Consensus 63 d~-~~i~A~~~~dGv-L~I~lPk~ 84 (84)
T cd06498 63 DP-LTITSSLSPDGV-LTVCGPRK 84 (84)
T ss_pred Ch-HHcEEEeCCCCE-EEEEEeCC
Confidence 55 468999987775 99999984
No 11
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=98.18 E-value=4.2e-05 Score=58.58 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=73.0
Q ss_pred ceeeeeeeee-cCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeE
Q 031993 22 PVTAAKTIYE-DEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIR 100 (149)
Q Consensus 22 PVtaAktIyE-de~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvr 100 (149)
+..-+-.||| ++++|.|.+.||+++.+.+.|+=. +|.+.|++-.... ....+.... |. .-|.|.|
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~----~~~LtI~ge~~~~----~~~~~~~~~-----Er-~~g~F~R 95 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE----GTRLTVKGTPEQP----EKEVKWLHQ-----GL-VNQPFSL 95 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE----CCEEEEEEEEccc----cCCCcEEEE-----EE-eCcEEEE
Confidence 3345789998 688999999999999999999764 7788998864311 111111111 11 3489999
Q ss_pred EeeCCCCCCCcccceeeecCCCceEEEeeecCc-CCCcceeEEEeecC
Q 031993 101 EIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHR-VGPEEHEVFKFLTS 147 (149)
Q Consensus 101 eipL~trIPedA~leAy~de~g~~LEi~VpK~r-~gpEEhEVrv~lrp 147 (149)
.|.||..|=.+ +|-|+. -||+|-+||.- ....-+-+.|.-||
T Consensus 96 ~f~LP~~vd~~---~A~~~n--GVL~I~lPK~~~~~~~~rkI~I~~~~ 138 (142)
T PRK11597 96 SFTLAENMEVS---GATFVN--GLLHIDLIRNEPEAIAPQRIAISERP 138 (142)
T ss_pred EEECCCCcccC---cCEEcC--CEEEEEEeccCccccCCcEEEECCcc
Confidence 99999988544 466653 37999999963 22233566666665
No 12
>PRK10743 heat shock protein IbpA; Provisional
Probab=98.15 E-value=2.6e-05 Score=58.91 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=64.4
Q ss_pred eeeee-ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 26 AKTIY-EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 26 AktIy-Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
+-.|+ |++++|.|.+.||.++.+.++|+-. +|.+.|++-..... .+..|... -..-|.|.|.|.|
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~----~~~LtI~ge~~~~~-----~~~~~~~~-----Er~~g~F~R~~~L 101 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQ----DNLLVVKGAHADEQ-----KERTYLYQ-----GIAERNFERKFQL 101 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEECccc-----cCCcEEEE-----EEECCEEEEEEEC
Confidence 47999 5999999999999999999999886 57899998643211 11112211 1245899999999
Q ss_pred CCCCCCcccceeeecCCCceEEEeeecC
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~VpK~ 132 (149)
|..+=.| +|=|+. -||+|-+||.
T Consensus 102 P~~Vd~~---~A~~~d--GVL~I~lPK~ 124 (137)
T PRK10743 102 AENIHVR---GANLVN--GLLYIDLERV 124 (137)
T ss_pred CCCcccC---cCEEeC--CEEEEEEeCC
Confidence 9988665 244432 3799999996
No 13
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.13 E-value=4.4e-05 Score=52.56 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=63.1
Q ss_pred eeeeeec-CceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 26 AKTIYED-EQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 26 AktIyEd-e~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
+-.|+|+ +++|.+.+.||+++.+.++|+..+ +.+.|++-.....+ .++.|... ...-|.|.|.|.|
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~----~~L~I~g~~~~~~~----~~~~~~~~-----e~~~g~f~R~~~L 68 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEVEN----NQLTVTGKKADEEN----EEREYLHR-----GIAKRAFERSFNL 68 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC----CEEEEEEEEccccc----CCCcEEEE-----EEeceEEEEEEEC
Confidence 3579996 599999999999999999999874 68999987655543 23333322 1345899999999
Q ss_pred CCCCCCcccceeeecCCCceEEEeeec
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~VpK 131 (149)
|..+-.+ +|=|+. -+|.|-+|+
T Consensus 69 P~~vd~~---~A~~~~--GvL~I~l~~ 90 (90)
T cd06470 69 ADHVKVK---GAELEN--GLLTIDLER 90 (90)
T ss_pred CCCceEC---eeEEeC--CEEEEEEEC
Confidence 9876432 565543 358887764
No 14
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5.2e-05 Score=56.07 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=70.1
Q ss_pred eeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecC----CcceeeeccceEEeeCCCCCCCCCCcee
Q 031993 24 TAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTA----CMPYIQRNDRTFKLTDPSPEHCPPGEFI 99 (149)
Q Consensus 24 taAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~----~~p~ikRhdRtFkLtdps~ehCPPGeFv 99 (149)
+=+-+|||+++.|.|.+.||++|.+.++|+..+ +.+.|++-... ....+.+..|. -|+|.
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~----~~l~I~g~~~~~~~~~~~~~~~~e~~------------~~~f~ 103 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEG----NTLTIRGEREEEEEEEEEGYLRRERA------------YGEFE 103 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC----CEEEEEEEecccccccCCceEEEEEE------------eeeEE
Confidence 446799999999999999999999999998874 44777776543 12222233332 38999
Q ss_pred EEeeCCCCCCCcccceeeecCCCceEEEeeecCcC
Q 031993 100 REIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRV 134 (149)
Q Consensus 100 reipL~trIPedA~leAy~de~g~~LEi~VpK~r~ 134 (149)
|.|+||..+=++ ++.|=|.. -+|.|-+||.-.
T Consensus 104 r~~~Lp~~v~~~-~~~A~~~n--GvL~I~lpk~~~ 135 (146)
T COG0071 104 RTFRLPEKVDPE-VIKAKYKN--GLLTVTLPKAEP 135 (146)
T ss_pred EEEECccccccc-ceeeEeeC--cEEEEEEecccc
Confidence 999999999877 67887753 479999999743
No 15
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=97.93 E-value=0.00011 Score=51.06 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=61.1
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
.|++.|.|.+-||.++.+.++|+=. +|.+.|++-.... -.++++. -+||.|.|.||..+-.
T Consensus 4 ~~~d~y~v~~dlpG~~~edi~V~v~----~~~L~I~g~~~~~---~~~~~~~------------~~eF~R~~~LP~~vd~ 64 (83)
T cd06476 4 SEDDKYQVFLDVCHFTPDEITVRTV----DNLLEVSARHPQR---MDRHGFV------------SREFTRTYILPMDVDP 64 (83)
T ss_pred ccCCeEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEcce---ecCCCEE------------EEEEEEEEECCCCCCh
Confidence 5789999999999999999999766 6789999864321 1122222 2469999999988754
Q ss_pred cccceeeecCCCceEEEeeec
Q 031993 111 DAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~VpK 131 (149)
.+++|-|...|- |.|-+||
T Consensus 65 -~~v~A~~~~dGv-L~I~~Pr 83 (83)
T cd06476 65 -LLVRASLSHDGI-LCIQAPR 83 (83)
T ss_pred -hhEEEEecCCCE-EEEEecC
Confidence 468999977775 9999997
No 16
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.73 E-value=0.0002 Score=49.94 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=61.6
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~tr 107 (149)
.|+|+++.|.+.+-||.++.+.++|+=. .|.+.|++---. -++. .-|+|.|.|+||..
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~----~~~L~I~ger~~-------~~~~-----------~~g~F~R~~~LP~~ 59 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS----NNQIEVHAEKLA-------SDGT-----------VMNTFTHKCQLPED 59 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEec-------cCCC-----------EEEEEEEEEECCCC
Confidence 4899999999999999999999999655 578999874211 0110 36899999999999
Q ss_pred CCCcccceeeecCCCceEEEeeec
Q 031993 108 IPDDAKLEAYGDETGTGLEIMVPK 131 (149)
Q Consensus 108 IPedA~leAy~de~g~~LEi~VpK 131 (149)
|-.+ +++|-|.+.|- |+|-+++
T Consensus 60 vd~e-~v~A~l~~~Gv-L~I~~~~ 81 (81)
T cd06479 60 VDPT-SVSSSLGEDGT-LTIKARR 81 (81)
T ss_pred cCHH-HeEEEecCCCE-EEEEecC
Confidence 8654 58888766675 8887653
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=97.44 E-value=0.00083 Score=47.64 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=60.4
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
-|++.|.|.+-||.++.+.++|+.. +|.+.|++-...... ..++ .|. ..|+|.|.|.||..|=.
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~----~~~L~I~ger~~~~e---~~~~--------~er-~~g~F~R~f~LP~~Vd~ 68 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVK----DGKVQVSAERENRYD---CLGS--------KKY-SYMNICKEFSLPPGVDE 68 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEE----CCEEEEEEEEecccc---cCCc--------cEE-EEEEEEEEEECCCCcCh
Confidence 3788999999999999999999887 688999987543221 0111 122 67999999999998855
Q ss_pred cccceeeecCCCceEEEeee
Q 031993 111 DAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~Vp 130 (149)
| +++|=|..-| +|+|=-|
T Consensus 69 d-~i~A~~~~~~-~l~i~~~ 86 (87)
T cd06482 69 K-DVTYSYGLGS-VVKIETP 86 (87)
T ss_pred H-HcEEEEcCCC-EEEEeeC
Confidence 4 5777776544 5887544
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=97.40 E-value=0.0023 Score=44.95 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=58.2
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
|++++|.|.+-||.++.+.++|+-. +|.+.|++-..... .++.|. -+.|.|.|+||..+-.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~----~~~L~I~ge~~~~~-----~~~~~~----------~r~F~R~~~LP~~Vd~ 64 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVF----EGWLLIKGQHGVRM-----DEHGFI----------SRSFTRQYQLPDGVEH 64 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEE----CCEEEEEEEEcccc-----CCCCEE----------EEEEEEEEECCCCcch
Confidence 7899999999999999999999655 78999999754422 222231 1289999999988865
Q ss_pred cccceeeecCCCceEEEeee
Q 031993 111 DAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~Vp 130 (149)
+ +++|=|.+.| +|+|-.|
T Consensus 65 ~-~v~A~~~~dG-vL~I~~~ 82 (83)
T cd06477 65 K-DLSAMLCHDG-ILVVETK 82 (83)
T ss_pred h-eEEEEEcCCC-EEEEEec
Confidence 4 5777654555 4888654
No 19
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=97.21 E-value=0.0039 Score=43.37 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=60.0
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
+-+++|.|.+-||.++.+.++|+=. ++.+.|++....... -.++.|. +--|+|.|.|.||..|=.
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~----~~~L~I~g~~~~~~~---~~~~~~~--------~~~~~F~R~~~LP~~Vd~ 68 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD----GRKLVVTGKREKKNE---DEKGSFS--------YEYQEFVREAQLPEHVDP 68 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE----CCEEEEEEEEeeecc---cCCCcEE--------EEeeEEEEEEECCCCcCh
Confidence 3568999999999999999999765 678999987543211 0111221 114899999999988743
Q ss_pred cccceeeecCCCceEEEeee
Q 031993 111 DAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~Vp 130 (149)
..+.|.|.+.|- |.|-+|
T Consensus 69 -~~i~A~~~~dGv-L~I~~P 86 (87)
T cd06481 69 -EAVTCSLSPSGH-LHIRAP 86 (87)
T ss_pred -HHeEEEeCCCce-EEEEcC
Confidence 458899977775 888887
No 20
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=96.48 E-value=0.045 Score=35.34 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=50.7
Q ss_pred eecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCC
Q 031993 30 YEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIP 109 (149)
Q Consensus 30 yEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIP 109 (149)
|++++-+.|.|-||.+....++|+-.+ ..++|++ ..|.+++.|+..|-
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~----~~l~i~~----------------------------~~~~~~~~l~~~I~ 49 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSD----LYLKVNF----------------------------PPYLFELDLAAPID 49 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEec----CEEEEcC----------------------------CCEEEEEeCccccc
Confidence 678889999999999988888876643 4566655 14899999999983
Q ss_pred CcccceeeecCCCceEEEeeecCc
Q 031993 110 DDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 110 edA~leAy~de~g~~LEi~VpK~r 133 (149)
.| +..+-++. ..|+|.++|..
T Consensus 50 ~e-~~~~~~~~--~~l~i~L~K~~ 70 (78)
T cd06469 50 DE-KSSAKIGN--GVLVFTLVKKE 70 (78)
T ss_pred cc-ccEEEEeC--CEEEEEEEeCC
Confidence 33 34444543 36999999964
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.027 Score=44.48 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=74.8
Q ss_pred ccceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcce------eeeccceEEeeCCCCCCC
Q 031993 20 YGPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPY------IQRNDRTFKLTDPSPEHC 93 (149)
Q Consensus 20 ~GPVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~------ikRhdRtFkLtdps~ehC 93 (149)
..+.-++..|+|-++.|-+.+.||.+..+.+||.-.+.- ++.|++-......= .++-.|..
T Consensus 80 ~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~---~l~isGe~~~e~e~~~~~~~~~~~E~~~---------- 146 (196)
T KOG0710|consen 80 KSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEK---VLTISGERKKEEEESGSGKKWKRVERKL---------- 146 (196)
T ss_pred cccccCCcccccCCCceEEEeeCCCCCchhceEEeccCc---EEEEecccccccccccCCccceeehhcc----------
Confidence 344455666899999999999999999999999876443 78888776554431 22223322
Q ss_pred CCCceeEEeeCCCCCCCcccceeeecCCCceEEEeeecCcCCCcce
Q 031993 94 PPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVGPEEH 139 (149)
Q Consensus 94 PPGeFvreipL~trIPedA~leAy~de~g~~LEi~VpK~r~gpEEh 139 (149)
|.|.|.+.||.-+ +..+++|.|.. | ||-|.|||.-.-.++-
T Consensus 147 --g~F~r~~~lPenv-~~d~ikA~~~n-G-VL~VvvpK~~~~~~~~ 187 (196)
T KOG0710|consen 147 --GKFKRRFELPENV-DVDEIKAEMEN-G-VLTVVVPKLEPLLKKP 187 (196)
T ss_pred --cceEeeecCCccc-cHHHHHHHhhC-C-eEEEEEecccccccCC
Confidence 3999999999998 77888888854 4 5999999986543333
No 22
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=95.93 E-value=0.13 Score=32.06 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=53.6
Q ss_pred eecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCC
Q 031993 30 YEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIP 109 (149)
Q Consensus 30 yEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIP 109 (149)
+++++...|.|-+|.+..+.+.|+..+ ..+.|+.... +.+.|.+++.|+..|-
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~----~~l~i~~~~~-----------------------~~~~~~~~~~L~~~I~ 54 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTP----KSLTVSVKGG-----------------------GGKEYLLEGELFGPID 54 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEec----CEEEEEeeCC-----------------------CCCceEEeeEccCccc
Confidence 567788899999999988888887764 3355554321 3477899999999997
Q ss_pred CcccceeeecCCCceEEEeeecCcC
Q 031993 110 DDAKLEAYGDETGTGLEIMVPKHRV 134 (149)
Q Consensus 110 edA~leAy~de~g~~LEi~VpK~r~ 134 (149)
.|+- .+-+ ....|+|.++|...
T Consensus 55 ~~~s-~~~~--~~~~l~i~L~K~~~ 76 (84)
T cd06463 55 PEES-KWTV--EDRKIEITLKKKEP 76 (84)
T ss_pred hhhc-EEEE--eCCEEEEEEEECCC
Confidence 7632 2222 23679999999754
No 23
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=94.79 E-value=0.2 Score=36.01 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=64.7
Q ss_pred cceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeE
Q 031993 21 GPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIR 100 (149)
Q Consensus 21 GPVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvr 100 (149)
||--..-++-.+++.|-|.+-+-.++.+-++|+=. ++.|.|++--...+- -++ |- + ++|.|
T Consensus 2 ~~~~~~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~----~~~L~V~Gkh~~~~~---e~g--~~--------~--r~F~R 62 (91)
T cd06480 2 GPPEPRNPPPNSSEPWKVCVNVHSFKPEELTVKTK----DGFVEVSGKHEEQQK---EGG--IV--------S--KNFTK 62 (91)
T ss_pred CCCcccCCCCCCCCcEEEEEEeCCCCHHHcEEEEE----CCEEEEEEEECcccC---CCC--EE--------E--EEEEE
Confidence 33334445567889999999999999999999754 678999987554321 111 11 1 89999
Q ss_pred EeeCCCCCCCcccceeeecCCCceEEEeee
Q 031993 101 EIPLPTRIPDDAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 101 eipL~trIPedA~leAy~de~g~~LEi~Vp 130 (149)
.+.||-.+-. ..+.|-+.+.|- |.|..|
T Consensus 63 ~~~LP~~Vd~-~~v~s~l~~dGv-L~IeaP 90 (91)
T cd06480 63 KIQLPPEVDP-VTVFASLSPEGL-LIIEAP 90 (91)
T ss_pred EEECCCCCCc-hhEEEEeCCCCe-EEEEcC
Confidence 9999877744 467888888886 888877
No 24
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=88.10 E-value=4.4 Score=26.13 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=49.2
Q ss_pred eecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCC
Q 031993 30 YEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIP 109 (149)
Q Consensus 30 yEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIP 109 (149)
|++++-..|.|-+|.+..+.++|+-.++ .+.|++... ..++|..++.|...|-
T Consensus 3 ~Qt~~~v~i~v~~~~~~~~~v~v~~~~~----~l~i~~~~~-----------------------~~~~~~~~~~L~~~I~ 55 (84)
T cd06466 3 YQTDTSVTVTIYAKNVDKEDVKVEFNEQ----SLSVSIILP-----------------------GGSEYQLELDLFGPID 55 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEecC----EEEEEEECC-----------------------CCCeEEEecccccccC
Confidence 5666667778888988888888877642 255544321 3457888999999985
Q ss_pred CcccceeeecCCCceEEEeeecCc
Q 031993 110 DDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 110 edA~leAy~de~g~~LEi~VpK~r 133 (149)
.+ +..|.=....+||.+.|..
T Consensus 56 ~~---~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 56 PE---QSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred ch---hcEEEEeCeEEEEEEEcCC
Confidence 44 2223323345999999964
No 25
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=73.98 E-value=2.5 Score=23.51 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=12.2
Q ss_pred eeeeeecCceEEEEEe
Q 031993 26 AKTIYEDEQGYLIIIS 41 (149)
Q Consensus 26 AktIyEde~gYLi~iS 41 (149)
-.+||||.+|+|.+=+
T Consensus 7 I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGT 22 (24)
T ss_dssp EEEEEE-TTSCEEEEE
T ss_pred EEEEEEcCCcCEEEEe
Confidence 4589999999998743
No 26
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=66.06 E-value=13 Score=26.87 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=26.0
Q ss_pred eccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEEEeee
Q 031993 78 RNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 78 RhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LEi~Vp 130 (149)
-+||.|.|.|++ |+|+. ..+.|.=|.|.+-+|+.+..|.|-.|
T Consensus 32 ~~DR~~~l~d~~------g~~it----~r~~P~l~~i~~~~~~~~~~l~l~~~ 74 (120)
T PF03476_consen 32 AGDRRFMLVDED------GRFIT----QRQYPRLALIRPEIDEDDGTLTLSAP 74 (120)
T ss_dssp GT--SEEEEETT------S-EE-----TTT-GGGG--EEEE---SSEEEEE-S
T ss_pred ccchhheeECCC------CCEEe----eccCcceeeEEEEeecceeEEEEECC
Confidence 699999999854 56765 56799999999999977777888776
No 27
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=57.63 E-value=23 Score=25.94 Aligned_cols=42 Identities=29% Similarity=0.568 Sum_probs=34.1
Q ss_pred EeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeec-CCCceEEEeeecCcCC
Q 031993 84 KLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGD-ETGTGLEIMVPKHRVG 135 (149)
Q Consensus 84 kLtdps~ehCPPGeFvreipL~trIPedA~leAy~d-e~g~~LEi~VpK~r~g 135 (149)
-|.||.+.+| |+-|.|+ --+++-+|| |+|.-+|+.+|..-.+
T Consensus 10 vL~DP~SG~Y----y~vd~P~------Qp~~k~lfDPETGqYVeV~iP~s~~~ 52 (75)
T PF15232_consen 10 VLQDPESGQY----YVVDAPV------QPKTKTLFDPETGQYVEVLIPSSPPG 52 (75)
T ss_pred EeecCCCCCE----EEEecCC------CcceeeeecCCCCcEEEEeCCCcccC
Confidence 4789998887 8888877 346788998 8999999999976444
No 28
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=56.92 E-value=14 Score=27.36 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=26.8
Q ss_pred ccccccccceeeeeeeeecCce--EEEEEeccccccc
Q 031993 14 GVMRNVYGPVTAAKTIYEDEQG--YLIIISLPFADLK 48 (149)
Q Consensus 14 Gvm~~~~GPVtaAktIyEde~g--YLi~iSLPfvd~~ 48 (149)
.|+|+-..|..+|-.=.++++. .|+++.|||.|--
T Consensus 93 ~v~r~~~~p~l~aL~P~~~~~~~~~l~~~~Lpfaedv 129 (140)
T smart00559 93 YTLRTKSNPRLVALRPYDEEDDGEGLVLVQLPFADDV 129 (140)
T ss_pred EEEcCCCCCEEEEEEeeecccCCCcEEEEecCCchhc
Confidence 4677766799888877766443 8999999999853
No 29
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=52.07 E-value=16 Score=29.80 Aligned_cols=51 Identities=29% Similarity=0.464 Sum_probs=36.8
Q ss_pred ceeeeccceEEeeCCCCCCCC--CCceeE--EeeCCCCCCCccc--ceeeecCCCceEE
Q 031993 74 PYIQRNDRTFKLTDPSPEHCP--PGEFIR--EIPLPTRIPDDAK--LEAYGDETGTGLE 126 (149)
Q Consensus 74 p~ikRhdRtFkLtdps~ehCP--PGeFvr--eipL~trIPedA~--leAy~de~g~~LE 126 (149)
=+|+=|+.||.|-|-+ .|| ||+|.. .+-||.-+|.-.- .-.-||+.|--|.
T Consensus 80 ~gi~ihsethDLCdet--sCPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LT 136 (153)
T KOG4680|consen 80 GGIRIHSETHDLCDET--SCPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELT 136 (153)
T ss_pred eeEEEeeccccccccc--cCCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEE
Confidence 4678899999999888 687 999975 5778998887532 1123566665554
No 30
>PF12859 Apc1: Anaphase-promoting complex subunit 1
Probab=49.63 E-value=78 Score=22.60 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=37.5
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCccee-----------------------------ee
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYI-----------------------------QR 78 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~i-----------------------------kR 78 (149)
.||-. +|=-++|+|||- |+=-|- ...|++-=........... .-
T Consensus 12 ~vy~~-~G~~~~v~LPF~----V~~~~~--~~~GlLLqR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (105)
T PF12859_consen 12 HVYFP-SGESYTVPLPFE----VSSAWP--LPRGLLLQRKPESSEPSPSSPQPLSKPRDNSLSPSPSLDSSNPSPTSSPP 84 (105)
T ss_pred EEEeC-CCCEEEEEeceE----eeEEec--cCCEEEEEEccCCCccccccccccccccccccccccccccccccCCCCCC
Confidence 45555 577889999994 555565 4558775444333222211 23
Q ss_pred ccceEEeeCCCCCCCC
Q 031993 79 NDRTFKLTDPSPEHCP 94 (149)
Q Consensus 79 hdRtFkLtdps~ehCP 94 (149)
-.|.|-|+||..|-||
T Consensus 85 ~p~lfsL~~PL~E~~p 100 (105)
T PF12859_consen 85 LPRLFSLSDPLDEFGP 100 (105)
T ss_pred CceEEEecCCcccccc
Confidence 4578999999888876
No 31
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=38.22 E-value=1.2e+02 Score=20.31 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred cceeEEEeecCCCceEEEEeEec---CCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCce
Q 031993 48 KRVKVTWWNNLTHGVVKISSLST---ACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTG 124 (149)
Q Consensus 48 ~~vkvswrNt~thGivKI~cvST---~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~ 124 (149)
..|.+.|.+ .-..|.|.+-=. ...|..|..+. |.++- .+|||.|-=.+=.-+.---|.+....-|+-|..
T Consensus 2 ~~v~f~~~~--~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~----~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~ 74 (79)
T cd02859 2 VPTTFVWPG--GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATL----RLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNV 74 (79)
T ss_pred eEEEEEEcC--CCcEEEEEEEcCCCCccccceECCCC-cEEEE----EcCCCCEEEEEEECCEEEeCCCCCccCCCCCcE
Confidence 468899997 445777776311 14667776666 66663 367887666555545444444455555666654
Q ss_pred EEE
Q 031993 125 LEI 127 (149)
Q Consensus 125 LEi 127 (149)
--|
T Consensus 75 NN~ 77 (79)
T cd02859 75 NNV 77 (79)
T ss_pred eee
Confidence 433
No 32
>cd07828 nitrobindin nitrobindin heme-binding domain. Nitrobindin is a heme-containing lipocalin that may reversibly bind nitric oxide. This heme-binding domain forms a beta barrel structure, and in a small family of proteins from tetrapods, it is found C-terminal to a THAP zinc finger domain (a sequence-specific DNA binding domain). Members of this group are putatively related to fatty acid-binding proteins (FABPs).
Probab=37.62 E-value=89 Score=23.73 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=44.8
Q ss_pred eeeecCceEEEE------EecccccccceeEEEeecCCCceEEEEeEecCCcce---eeeccceEEeeCCCCCCCCCCce
Q 031993 28 TIYEDEQGYLII------ISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPY---IQRNDRTFKLTDPSPEHCPPGEF 98 (149)
Q Consensus 28 tIyEde~gYLi~------iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~---ikRhdRtFkLtdps~ehCPPGeF 98 (149)
..+-+|-||+.+ |.+=++...-+-.-|.-+.....+.+..-+.+|.+| +..--|.|.|.+ |++
T Consensus 54 ~p~h~E~Gfwr~~~~~~~V~~~la~p~G~~ei~~G~~~~~~~~l~~~~i~rt~~a~~~~~~~R~~~l~~--------~~L 125 (148)
T cd07828 54 RPLHRETGFWRIDPDTGEVELLLAHPTGVVEIEEGEVRGTQLELTTDAVARTSFAPEVTAAKRLYGLVD--------GTL 125 (148)
T ss_pred CcceEeeEEEEEcCCCCEEEEEEEECCceEEEEEeEEcCCEEEEEEccEEEcCCcccccceEEEEEEeC--------CeE
Confidence 456778888875 555555555555555555555555555555556666 666788898864 666
Q ss_pred eEEeeCCCCC
Q 031993 99 IREIPLPTRI 108 (149)
Q Consensus 99 vreipL~trI 108 (149)
.-.....+-+
T Consensus 126 ~~~~~~~~~~ 135 (148)
T cd07828 126 SYTVDMATVG 135 (148)
T ss_pred EEEEEeeeCC
Confidence 5555554443
No 33
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=2.4e+02 Score=22.43 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=68.9
Q ss_pred ceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCc---ceeeeccceEEeeCCCCCCCCCCce
Q 031993 22 PVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACM---PYIQRNDRTFKLTDPSPEHCPPGEF 98 (149)
Q Consensus 22 PVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~---p~ikRhdRtFkLtdps~ehCPPGeF 98 (149)
+..++..|-.+++||=+-+=.-.+...-++|.=. .+.|.|.+---.+. -||.| +|
T Consensus 60 ~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~----~~~l~V~gkHeer~d~~G~v~R------------------~F 117 (173)
T KOG3591|consen 60 LSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTD----DNTLEVEGKHEEKEDEHGYVSR------------------SF 117 (173)
T ss_pred CcccccccccCCCcEEEEEEcccCcccceEEEeC----CCEEEEEeeeccccCCCCeEEE------------------EE
Confidence 4667888999999999988888888888888533 34788887665554 44444 58
Q ss_pred eEEeeCCCCCCCcccceeeecCCCceEEEeeecCcCCCc-ceeEEEe
Q 031993 99 IREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVGPE-EHEVFKF 144 (149)
Q Consensus 99 vreipL~trIPedA~leAy~de~g~~LEi~VpK~r~gpE-EhEVrv~ 144 (149)
+|.+.||.-.=- ..+.+-....|. |-|=+||.-...+ |.+|.+-
T Consensus 118 ~R~y~LP~~vdp-~~V~S~LS~dGv-LtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 118 VRKYLLPEDVDP-TSVTSTLSSDGV-LTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEecCCCCCCh-hheEEeeCCCce-EEEEccCCCCcCccceEEeEe
Confidence 899887643311 234556677776 9999999854443 7777654
No 34
>PF11795 DUF3322: Uncharacterized protein conserved in bacteria N-term (DUF3322); InterPro: IPR024537 This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the N terminus.
Probab=33.89 E-value=16 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 83 FKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 83 FkLtdps~ehCPPGeFvreipL~tr 107 (149)
.++.+--..||-+|-|.|++|+|+=
T Consensus 148 ~~vl~wl~~h~~~g~ylRqlpi~Gv 172 (190)
T PF11795_consen 148 LAVLDWLRPHPRSGLYLRQLPIPGV 172 (190)
T ss_pred HHHHHHHhcCCCCCCchhhCCcCCc
Confidence 3344444679999999999999863
No 35
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=32.87 E-value=92 Score=25.45 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=33.2
Q ss_pred ecccccccceeEEEeec--CCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEE
Q 031993 41 SLPFADLKRVKVTWWNN--LTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIRE 101 (149)
Q Consensus 41 SLPfvd~~~vkvswrNt--~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvre 101 (149)
.|-| -.|+++++|+|. ..+|.|.|.++|---+|= =|=-||-. -.=|-|-|-|.
T Consensus 44 rlDF-~~Q~L~F~~W~v~l~~pGkvtItgtsQ~WTPD-----LTnLMTRQ--LLeP~~~Fwr~ 98 (151)
T PF06554_consen 44 RLDF-SQQKLQFSRWNVSLDKPGKVTITGTSQLWTPD-----LTNLMTRQ--LLEPAAVFWRK 98 (151)
T ss_dssp EEE--TTSSEEEEEEEEEESSSEEEEEEEB-TTS-TT-----TS-SBCCC--CSSSEEEEEEE
T ss_pred Eecc-hhheeeeeEEEEEeCCCCeEEEEeeccccCcc-----hhHHHHHH--hcchhhhhccC
Confidence 4566 456799999986 579999999999777663 23333321 23366777776
No 36
>PF14930 Qn_am_d_aII: Quinohemoprotein amine dehydrogenase, alpha subunit domain II; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=30.99 E-value=1.4e+02 Score=22.78 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=37.9
Q ss_pred cceeeeeeeeecC-ceEEEEEecccccccceeE----------EEeecCCCceEEEEeEe
Q 031993 21 GPVTAAKTIYEDE-QGYLIIISLPFADLKRVKV----------TWWNNLTHGVVKISSLS 69 (149)
Q Consensus 21 GPVtaAktIyEde-~gYLi~iSLPfvd~~~vkv----------swrNt~thGivKI~cvS 69 (149)
|=.++..++-... +.|-..+.|-|.|=+.++. .||-++.-|-+++.-|=
T Consensus 18 G~~~G~mtv~~~~~d~Y~v~~~~~~adG~~~~~~G~a~vYtGyEWRasl~~g~~~~RQV~ 77 (108)
T PF14930_consen 18 GDYTGTMTVTPGGDDRYEVSMTLRYADGSELTGSGSAIVYTGYEWRASLKIGGVKMRQVF 77 (108)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEETTCEEEEEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEccCCCCceEEEEEEEecCCCeecceeeEEEecccEEEEEEeeCCEEhhhEE
Confidence 4445555555555 9999999999999999776 59999988888877653
No 37
>PRK06749 replicative DNA helicase; Provisional
Probab=30.74 E-value=46 Score=29.25 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCCCCCcccc------eeeecCC---CceEEEeeecCcCCCcceeEEEeecC
Q 031993 105 PTRIPDDAKL------EAYGDET---GTGLEIMVPKHRVGPEEHEVFKFLTS 147 (149)
Q Consensus 105 ~trIPedA~l------eAy~de~---g~~LEi~VpK~r~gpEEhEVrv~lrp 147 (149)
++-|-.||++ ++||+.. -...||+|-|+|.||-- .|.+...+
T Consensus 369 SG~IEqdAD~vl~l~R~~~y~~~~~~~~~~eliiaKnR~G~~G-~v~~~f~~ 419 (428)
T PRK06749 369 TGQIEQDADVIMLMYREDYYDKETMQKEMTEIHVAKHRNGPVG-SFKLRFLK 419 (428)
T ss_pred cccccccCCEEEEEeecccccccccCCCceEEEEecCCCCCCc-eEEEEEec
Confidence 5667778775 3566432 23589999999999754 45554443
No 38
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=30.38 E-value=80 Score=19.69 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=20.9
Q ss_pred ceeEEEeec-----CCCceEEEEeEecCCcce-eeeccceEEee
Q 031993 49 RVKVTWWNN-----LTHGVVKISSLSTACMPY-IQRNDRTFKLT 86 (149)
Q Consensus 49 ~vkvswrNt-----~thGivKI~cvST~~~p~-ikRhdRtFkLt 86 (149)
+.++.||+. .+|..|.|+..+.. .|. |+=+|+.+.|+
T Consensus 11 ~F~~~~rg~~l~v~i~~~~v~v~~~~g~-~~l~i~v~g~~~~L~ 53 (54)
T PF03633_consen 11 SFRLRYRGHWLEVEITHEKVTVTLLSGD-APLTIKVYGEEVTLK 53 (54)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEESS---EEEEETT------
T ss_pred EEEEEECCEEEEEEEECCEEEEEEccCC-ccEEEEECCCccccC
Confidence 456677764 67888889888776 554 66677777664
No 39
>PF08768 DUF1794: Domain of unknown function (DUF1794); InterPro: IPR014878 This protein forms a beta barrel structure. It is sometimes found on proteins containing a THAP (IPR006612 from INTERPRO) domain. ; PDB: 2FR2_A 2A13_A 2Q4N_A 3EMM_A 3IA8_B 2FWV_A.
Probab=30.31 E-value=1.4e+02 Score=22.57 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=39.1
Q ss_pred eeecCceEEEE------EecccccccceeEEEeecCCCceEEEEeEecCCccee---eeccceEEeeC
Q 031993 29 IYEDEQGYLII------ISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYI---QRNDRTFKLTD 87 (149)
Q Consensus 29 IyEde~gYLi~------iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~i---kRhdRtFkLtd 87 (149)
..-+|.||+.+ |.+=++...-+-.-|.-+.....|++.--+.+|.||- .+-.|.|+|.|
T Consensus 59 p~h~E~Gf~~~~~~~~~v~~~~~~p~G~~~l~~G~~~~~~i~l~t~~i~r~~~~k~v~~~~R~~~l~~ 126 (154)
T PF08768_consen 59 PFHDETGFWRVDPATNEVELSLAHPRGVTELEEGTVDGPRIELETDAIARSPFAKEVTAFKRMFGLVD 126 (154)
T ss_dssp EEEEEEEEEEESTTSEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEEE-TTS-SEEEEEEEEEEET
T ss_pred ccccceeEEEEeCCCCEEEEEEEeCCceEEEEEEEcCCCEEEEEECcEEecccccccccEEEEEEEec
Confidence 56777899875 4445555555666677777777777776666666654 45667888874
No 40
>PF05472 Ter: DNA replication terminus site-binding protein (Ter protein); InterPro: IPR008865 This entry contains several bacterial DNA replication terminus site-binding proteins (also known as Ter proteins). They are required for the termination of DNA replication and function by binding to DNA replication terminator sequences, thus preventing the passage of replication forks []. The termination efficiency is affected by the affinity of a particular protein for the terminator sequence.; GO: 0003677 DNA binding, 0006274 DNA replication termination, 0005737 cytoplasm; PDB: 1SUT_A 2I06_A 2EWJ_A 2I05_A 1ECR_A.
Probab=29.41 E-value=42 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=14.1
Q ss_pred ccccceeEEEeecCCCceEEEE
Q 031993 45 ADLKRVKVTWWNNLTHGVVKIS 66 (149)
Q Consensus 45 vd~~~vkvswrNt~thGivKI~ 66 (149)
-+.++|.|+|.| +|.|-|++
T Consensus 151 ~~p~sI~F~Wa~--k~~ik~lt 170 (290)
T PF05472_consen 151 ENPDSIRFGWAN--KHSIKKLT 170 (290)
T ss_dssp -S-SEEEEEEEE--EEEEEEE-
T ss_pred cCcceEEEEeec--CcccccCC
Confidence 478999999998 77666664
No 41
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=29.28 E-value=64 Score=22.45 Aligned_cols=26 Identities=46% Similarity=0.792 Sum_probs=19.3
Q ss_pred eeeecCce-EEEEEecc--cccccceeEE
Q 031993 28 TIYEDEQG-YLIIISLP--FADLKRVKVT 53 (149)
Q Consensus 28 tIyEde~g-YLi~iSLP--fvd~~~vkvs 53 (149)
-|-+++.| |+-+++|| --|+.||++|
T Consensus 6 wveq~EpGVyiTl~~~p~G~~~LkRVRFS 34 (59)
T PF08381_consen 6 WVEQDEPGVYITLVSLPDGGNDLKRVRFS 34 (59)
T ss_pred EEEeeCCeeEEEEEECCCCCeeEEEEEEh
Confidence 46678888 55577888 4678888887
No 42
>PF04516 CP2: CP2 transcription factor; InterPro: IPR007604 This entry represents a conserved region in the CP2 transcription factor family.
Probab=28.72 E-value=57 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.4
Q ss_pred ccccccceeEEEeecC-CCce-EEEEeEecC
Q 031993 43 PFADLKRVKVTWWNNL-THGV-VKISSLSTA 71 (149)
Q Consensus 43 Pfvd~~~vkvswrNt~-thGi-vKI~cvST~ 71 (149)
.-...+.+.|.|.-+. .-+| |+|.|+||.
T Consensus 141 ~~~s~n~~~f~W~p~~~~~~i~i~~ncLSTd 171 (236)
T PF04516_consen 141 EEPSFNAFSFIWDPNENEASIFIRFNCLSTD 171 (236)
T ss_pred cccccCeEEEEecCCCCCceEEEEEEecccc
Confidence 3344578999999777 4555 899999997
No 43
>PRK06904 replicative DNA helicase; Validated
Probab=27.79 E-value=59 Score=29.02 Aligned_cols=42 Identities=31% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCCCCCcccc------eeeecCC----CceEEEeeecCcCCCcceeEEEeecC
Q 031993 105 PTRIPDDAKL------EAYGDET----GTGLEIMVPKHRVGPEEHEVFKFLTS 147 (149)
Q Consensus 105 ~trIPedA~l------eAy~de~----g~~LEi~VpK~r~gpEEhEVrv~lrp 147 (149)
++-|-.||++ +.||++. -...||+|-|+|.||-- .|.+...+
T Consensus 403 SG~IEqdAD~v~~l~R~~~y~~~~~~~~~~~elivaKnR~G~~G-~v~l~f~~ 454 (472)
T PRK06904 403 SGSIEQDADLIMFIYRDEVYNETTEDNKGVAEIIIGKQRNGPIG-RVRLAFQG 454 (472)
T ss_pred cCccccCCcEEEEEeccccccCccccCCCceEEEEeccCCCCCc-eEEEEEcc
Confidence 5667888886 4566532 13589999999999863 35554433
No 44
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=27.53 E-value=57 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.2
Q ss_pred eeeecCCCceEEEeeecCcC-CCcceeEEE
Q 031993 115 EAYGDETGTGLEIMVPKHRV-GPEEHEVFK 143 (149)
Q Consensus 115 eAy~de~g~~LEi~VpK~r~-gpEEhEVrv 143 (149)
|+||- |-++||+.+|... .+.+++++|
T Consensus 25 ePy~V--grI~eI~~~k~~~~k~~~~~ikv 52 (137)
T cd04711 25 EPFRI--GRIKEIFCAKRSNGKPNESDIKL 52 (137)
T ss_pred CCcEE--EEEEEEecCCCCCCCCCccceEE
Confidence 34553 6789999999865 788886443
No 45
>PRK05636 replicative DNA helicase; Provisional
Probab=26.64 E-value=62 Score=29.30 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCCCCCcccc------eeeecCCC---ceEEEeeecCcCCCcceeEEEeec
Q 031993 105 PTRIPDDAKL------EAYGDETG---TGLEIMVPKHRVGPEEHEVFKFLT 146 (149)
Q Consensus 105 ~trIPedA~l------eAy~de~g---~~LEi~VpK~r~gpEEhEVrv~lr 146 (149)
+.-|-.||++ +.||+... ...||+|-|+|.||-- .|.+...
T Consensus 444 SG~IEqdAD~vl~l~R~~~y~~~~~~~g~~elivaK~RnG~~G-tv~l~f~ 493 (505)
T PRK05636 444 SGSLEQDADMVMLLYRPDSQDKDDERAGEADIILAKHRGGPID-TVQVAHQ 493 (505)
T ss_pred cccccccCCEEEEEecccccCCccCCCCceEEEEecCCCCCCc-eEEEEee
Confidence 4567778874 34554221 2489999999999853 3444433
No 46
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=26.55 E-value=87 Score=23.85 Aligned_cols=36 Identities=36% Similarity=0.367 Sum_probs=20.6
Q ss_pred ccccccccceeeeeeeeecC---ceEEEEEecccccccc
Q 031993 14 GVMRNVYGPVTAAKTIYEDE---QGYLIIISLPFADLKR 49 (149)
Q Consensus 14 Gvm~~~~GPVtaAktIyEde---~gYLi~iSLPfvd~~~ 49 (149)
.|+|+..-|-.+|-.=+..+ ..+|+++.|||.|--|
T Consensus 140 ~v~r~~~~p~l~aL~P~~~~~~~~~gl~~~~Lpf~dDvR 178 (200)
T PF02735_consen 140 YVLRSNSRPRLVALIPQIEESDTPEGLVLIRLPFADDVR 178 (200)
T ss_dssp EESSTTS--EEEEEEEEE-CEEC-CEEEEEE---GGGB-
T ss_pred EEEcCCCCcEEEEEEEeccccCCCCeEEEEEcCChhhcc
Confidence 35666667777776666654 4789999999998765
No 47
>PF12892 FctA: T surface-antigen of pili; InterPro: IPR022464 This entry describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal and related bacteria proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The Streptococcus pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain. A Glu in the S. pyogenes major pilin, invariant as Glu or Gln, is described as catalytic for isopeptide bond formation []. ; PDB: 3GLE_C 3B2M_B 3GLD_C 3KLQ_B.
Probab=26.37 E-value=1.8e+02 Score=18.59 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=26.3
Q ss_pred ccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeC
Q 031993 47 LKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTD 87 (149)
Q Consensus 47 ~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtd 87 (149)
-+.-.+...|+..-+-++|+-.-+++.. .+...=+|.|++
T Consensus 48 ~~~~~~~F~N~y~~~~l~~~K~l~G~~~-~~~~~F~F~l~~ 87 (88)
T PF12892_consen 48 GETNTITFTNTYTATSLTVTKTLSGRDG-LKDKEFTFTLTA 87 (88)
T ss_dssp SCB--EEEEEEE-EEEEEEEEEEESTT---TT--EEEEEEE
T ss_pred cccccceecccccccceeEEEEeeCCCc-CcCCcEEEEEEe
Confidence 3455678899998888999998888877 677777787763
No 48
>PRK10972 Z-ring-associated protein; Provisional
Probab=25.94 E-value=30 Score=26.08 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=12.3
Q ss_pred eeeccceEEeeCCCCCCCCCCc
Q 031993 76 IQRNDRTFKLTDPSPEHCPPGE 97 (149)
Q Consensus 76 ikRhdRtFkLtdps~ehCPPGe 97 (149)
|+=-||.|++. |||||
T Consensus 8 v~ILgr~y~v~------Cp~~e 23 (109)
T PRK10972 8 IQIFGRSLRVN------CPPEQ 23 (109)
T ss_pred EEECCceeEec------CChhH
Confidence 33458899997 99997
No 49
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=25.32 E-value=1.1e+02 Score=21.98 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=33.6
Q ss_pred CceEEEEEecccccccceeEEEee--cCCCc------eEEEEeEecCCcceeeeccceEEeeCC-CCCCCCCCceeEEee
Q 031993 33 EQGYLIIISLPFADLKRVKVTWWN--NLTHG------VVKISSLSTACMPYIQRNDRTFKLTDP-SPEHCPPGEFIREIP 103 (149)
Q Consensus 33 e~gYLi~iSLPfvd~~~vkvswrN--t~thG------ivKI~cvST~~~p~ikRhdRtFkLtdp-s~ehCPPGeFvreip 103 (149)
.+-|-|-++++- ..+.++|++=- ..||+ .|+... .++.+.+..++-| +++-+|||-|+.=+=
T Consensus 14 g~~~tv~~~~~~-~~~~~~v~L~~~~~~THs~~~~QR~v~L~~--------~~~~~~~~~v~~P~~~~vaPPG~YmLFvv 84 (98)
T PF09118_consen 14 GQTFTVTVTVPS-AASIVKVSLVRPGFVTHSFNMGQRMVELEF--------VSGGGNTVTVTAPPNPNVAPPGYYMLFVV 84 (98)
T ss_dssp T-EEEEEE--SS----ESEEEEEE--EEETTB-SS-EEEEE-E--------EEESSSEEEEE--S-TTTS-SEEEEEEEE
T ss_pred CCEEEEEEECCC-ccceEEEEEEeCCcccccccCCCCEEeeee--------ecCCCCEEEEECCCCCccCCCcCEEEEEE
Confidence 344666666655 34445555432 22443 233322 4556777777766 788999999987654
Q ss_pred CCCCCCCccc
Q 031993 104 LPTRIPDDAK 113 (149)
Q Consensus 104 L~trIPedA~ 113 (149)
-..-+|.-|+
T Consensus 85 ~~~GvPS~a~ 94 (98)
T PF09118_consen 85 NDDGVPSVAK 94 (98)
T ss_dssp ETTS-B---E
T ss_pred cCCCcccccE
Confidence 4466665543
No 50
>PF07040 DUF1326: Protein of unknown function (DUF1326); InterPro: IPR009758 This family consists of several hypothetical bacterial proteins, which seem to be found exclusively in Rhizobium and Ralstonia species. Members of this family are typically around 210 residues in length and contain 5 highly conserved cysteine residues at their N terminus. The function of this family is unknown.
Probab=25.27 E-value=2e+02 Score=23.10 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=46.5
Q ss_pred CccccccccccccccceeeeeeeeecCceEEEEEe-------c----ccc-cccceeEEEee----cCCCceEEEEeEec
Q 031993 7 PWLHEFTGVMRNVYGPVTAAKTIYEDEQGYLIIIS-------L----PFA-DLKRVKVTWWN----NLTHGVVKISSLST 70 (149)
Q Consensus 7 ~W~~~fsGvm~~~~GPVtaAktIyEde~gYLi~iS-------L----Pfv-d~~~vkvswrN----t~thGivKI~cvST 70 (149)
-|+..|+-.+.++.||..|.-++-.|++..-+.|. . |.. .-+++.+.+.| +.+. .+.+-...+
T Consensus 89 g~~~~~a~lv~e~~~~~~apI~~~~d~~~~~~~i~~~~~~~~e~~~~p~~g~~~~~~~~~~~~~~~~~p~-~~~~a~~~~ 167 (184)
T PF07040_consen 89 GPFAVFASLVGEVLGVEFAPIEFEVDGDKRTVRIPGIIEAEGEPIINPVTGEDGRVRITLPNPGFEVGPG-PATVAKAGS 167 (184)
T ss_pred CcHHHHHHHhhhhcccEEeeEEEEEcCCeeEEEECCEEEeecceeeccccCCCCCceEecCCCccccCCc-ceEEEeecc
Confidence 58889999999999999999998877665543321 0 111 33455566666 3333 333333322
Q ss_pred CCcceeeeccceEEeeCC
Q 031993 71 ACMPYIQRNDRTFKLTDP 88 (149)
Q Consensus 71 ~~~p~ikRhdRtFkLtdp 88 (149)
++. +-+++.|.+.+.
T Consensus 168 ~~~---~~~G~~~~~~g~ 182 (184)
T PF07040_consen 168 GRF---RDFGFDWDFSGR 182 (184)
T ss_pred eEE---eccCcccccCCC
Confidence 222 556666665543
No 51
>PRK06321 replicative DNA helicase; Provisional
Probab=25.05 E-value=1.1e+02 Score=27.45 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=28.9
Q ss_pred CCCCCCcccc------eeeecCCC--ceEEEeeecCcCCCcceeEEEeecC
Q 031993 105 PTRIPDDAKL------EAYGDETG--TGLEIMVPKHRVGPEEHEVFKFLTS 147 (149)
Q Consensus 105 ~trIPedA~l------eAy~de~g--~~LEi~VpK~r~gpEEhEVrv~lrp 147 (149)
++-|-.||++ +.|||... -..||+|-|+|.||-- .|.+...|
T Consensus 408 SG~IEqdAD~v~~l~R~~~y~~~~~~~~~elivaKnR~G~~G-~v~l~f~~ 457 (472)
T PRK06321 408 SGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNRHGSIG-SVPLVFEK 457 (472)
T ss_pred cccccccCCEEEEEechhhcCCcCCCCceEEEEEecCCCCCc-eEEEEEec
Confidence 6778888884 34565322 2489999999999874 45555544
No 52
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=24.96 E-value=95 Score=19.46 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCCCCCceeEEeeCCCCC-CCcccceeeecCCCceEEEeee
Q 031993 91 EHCPPGEFIREIPLPTRI-PDDAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 91 ehCPPGeFvreipL~trI-PedA~leAy~de~g~~LEi~Vp 130 (149)
..+||++....+ .++. .+|..|+.|--+.|++|.+++.
T Consensus 34 ~g~~~~~qrL~~--~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 34 EGIPPQQQRLIY--SGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred hCCChhhEEEEE--CCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 357888755543 3443 4667789999999999998884
No 53
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=23.88 E-value=1.4e+02 Score=20.40 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=24.7
Q ss_pred ceeEEeeCCCCCCCcccceeeecCCCceEEEeeecCc
Q 031993 97 EFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 97 eFvreipL~trIPedA~leAy~de~g~~LEi~VpK~r 133 (149)
+|..+++|...|+++. --.+. .+++=+||.+.|..
T Consensus 45 ~~~~~~~L~~~I~~~~-~~~~~-~~~~KVEI~L~K~e 79 (87)
T cd06490 45 SYLLHLDLSNEVQWPC-EVRIS-TETGKIELVLKKKE 79 (87)
T ss_pred eEEEeeeccccCCCCc-EEEEc-ccCceEEEEEEcCC
Confidence 4899999999997665 22222 33456999999864
No 54
>cd00220 VMO-I Vitelline membrane outer layer protein I (VMO-I) domain, VMO-I is one of the proteins found in the outer layer of the vitelline membrane of poultry eggs; VMO-I, lysozyme, and VMO-II are tightly bound to ovomucin; this complex forms the backbone of the outer layer; VMO-I has three distinct internal repeats; all three repeats are used to define the domain here; VMO-I has recently been shown to synthesize N-acetylchito-oligosaccharides from N-acetylglucosamine; may be a carbohydrate-binding protein; member of the beta-prism-fold family
Probab=23.82 E-value=48 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=15.1
Q ss_pred CCCCCCCCceeEEeeCCC
Q 031993 89 SPEHCPPGEFIREIPLPT 106 (149)
Q Consensus 89 s~ehCPPGeFvreipL~t 106 (149)
..+.||.|+|+.-+.|--
T Consensus 16 ~~~~CP~G~~v~Gf~lk~ 33 (177)
T cd00220 16 QWERCPSGSFANGFQLKY 33 (177)
T ss_pred CceeCCCCCEEEEEEEEE
Confidence 478999999999988743
No 55
>PRK08006 replicative DNA helicase; Provisional
Probab=23.46 E-value=75 Score=28.42 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=27.1
Q ss_pred CCCCCCCcccc------eeeecCC---CceEEEeeecCcCCCcceeEEEee
Q 031993 104 LPTRIPDDAKL------EAYGDET---GTGLEIMVPKHRVGPEEHEVFKFL 145 (149)
Q Consensus 104 L~trIPedA~l------eAy~de~---g~~LEi~VpK~r~gpEEhEVrv~l 145 (149)
=++-|..||++ +.||+.. -...||+|-|+|.||-- .|++..
T Consensus 404 eSG~IEqdAD~v~~l~R~~~y~~~~~~~g~~elivaKnR~G~~G-~v~l~f 453 (471)
T PRK08006 404 ESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIG-TVRLTF 453 (471)
T ss_pred hcCcccccCCEEEEEecccccccccCCCCceEEEEecccCCCCc-eEEEEE
Confidence 36778888885 3455432 12489999999999863 344443
No 56
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=23.13 E-value=25 Score=25.62 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=21.7
Q ss_pred cccccccceeeeeeeeecCceEEEEE
Q 031993 15 VMRNVYGPVTAAKTIYEDEQGYLIII 40 (149)
Q Consensus 15 vm~~~~GPVtaAktIyEde~gYLi~i 40 (149)
+..++-|=...++-||--.+||+|+.
T Consensus 53 ~l~~~L~~Li~erkIY~tg~GYfivt 78 (80)
T PF10264_consen 53 VLYNTLGTLIKERKIYHTGEGYFIVT 78 (80)
T ss_pred HHHHHHHHHHHcCceeeCCCceEeeC
Confidence 35677778889999999999999863
No 57
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=22.95 E-value=4e+02 Score=21.33 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=33.7
Q ss_pred ccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEEEeee
Q 031993 79 NDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVP 130 (149)
Q Consensus 79 hdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LEi~Vp 130 (149)
..+...|.-+.+ .|-.+++||-+|=+| +..|-||..-..|.|-+|
T Consensus 283 ~~~~l~l~~~~~------~y~L~l~LP~~V~~~-~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 283 SEDRLSLSSPKP------KYRLDLPLPYPVDED-NGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred eCCEEEEEeCCC------ceEEEccCCCcccCC-CceEEEccCCCEEEEEEE
Confidence 345556653332 778889999998655 488999998888999887
No 58
>PLN02724 Molybdenum cofactor sulfurase
Probab=22.91 E-value=2.1e+02 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=28.7
Q ss_pred eccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEEE
Q 031993 78 RNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEI 127 (149)
Q Consensus 78 RhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LEi 127 (149)
++||.|.|.|. -|.|+. ..+.|.=+.|.+-+|..+..|-+
T Consensus 547 ~~DR~~~lvd~------~g~~~t----~r~~p~l~~i~~~~~~~~~~l~l 586 (805)
T PLN02724 547 LYDREWMIQSL------TGEILT----QKKVPEMCLITTFIDLESGKLVV 586 (805)
T ss_pred cccceEEEEcC------CCcEEE----cccCceEEEEEeEEecCCCeEEE
Confidence 58999999986 488875 34678888888888644433433
No 59
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=22.88 E-value=32 Score=24.62 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=13.5
Q ss_pred cCCcce-eeeccceEEeeCC
Q 031993 70 TACMPY-IQRNDRTFKLTDP 88 (149)
Q Consensus 70 T~~~p~-ikRhdRtFkLtdp 88 (149)
.+++.| |+++||-|+.-|-
T Consensus 15 ~G~KtfEiRkNDRdf~VGD~ 34 (72)
T PF12961_consen 15 SGRKTFEIRKNDRDFQVGDI 34 (72)
T ss_pred CCCceEEEEecCCCCCCCCE
Confidence 334444 8999999998763
No 60
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=22.30 E-value=1.1e+02 Score=23.86 Aligned_cols=31 Identities=35% Similarity=0.699 Sum_probs=26.3
Q ss_pred EeeCCCCCCCcccceeeecCCCceEEEee-ecC
Q 031993 101 EIPLPTRIPDDAKLEAYGDETGTGLEIMV-PKH 132 (149)
Q Consensus 101 eipL~trIPedA~leAy~de~g~~LEi~V-pK~ 132 (149)
+.+|| ..|.+++|..|+-.+.+-+...| ++.
T Consensus 12 ~~~LP-p~P~~~~l~~f~v~~~~~~~f~ID~~S 43 (139)
T PF08750_consen 12 EVPLP-PAPQDANLLPFDVSPTSPLKFFIDPKS 43 (139)
T ss_pred ccCCC-CCCCcCCccEEECCCCCCceEEEchhh
Confidence 45788 89999999999999989899888 444
No 61
>PF10976 DUF2790: Protein of unknown function (DUF2790); InterPro: IPR021245 This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.
Probab=22.14 E-value=89 Score=22.31 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=17.5
Q ss_pred ccccceeeeeeeeecCceEEEEEe
Q 031993 18 NVYGPVTAAKTIYEDEQGYLIIIS 41 (149)
Q Consensus 18 ~~~GPVtaAktIyEde~gYLi~iS 41 (149)
+.||.|.|-+ -|||.+|=+=.+.
T Consensus 46 ~~C~Vvpa~M-tY~DS~G~~h~l~ 68 (78)
T PF10976_consen 46 NVCGVVPARM-TYEDSQGELHTLE 68 (78)
T ss_pred CCCcEEccEE-EEECCCCCEEEEE
Confidence 6888887665 5999999766554
No 62
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=22.13 E-value=39 Score=24.97 Aligned_cols=11 Identities=45% Similarity=1.062 Sum_probs=8.2
Q ss_pred eecCceEEEEE
Q 031993 30 YEDEQGYLIII 40 (149)
Q Consensus 30 yEde~gYLi~i 40 (149)
|-||+|||+|.
T Consensus 86 ~kdeDGFLY~~ 96 (104)
T PF02991_consen 86 YKDEDGFLYMT 96 (104)
T ss_dssp HB-TTSSEEEE
T ss_pred hCCCCCeEEEE
Confidence 46899999984
No 63
>PHA03131 dUTPase; Provisional
Probab=21.34 E-value=1.4e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=36.2
Q ss_pred CceEEEEeEecCCcce-eeeccceEEeeCCCCCCCCCCc--eeEEeeCCCCC
Q 031993 60 HGVVKISSLSTACMPY-IQRNDRTFKLTDPSPEHCPPGE--FIREIPLPTRI 108 (149)
Q Consensus 60 hGivKI~cvST~~~p~-ikRhdRtFkLtdps~ehCPPGe--FvreipL~trI 108 (149)
.|.+++.....+..|+ |++++|.-.|.=-..+|||-+- +...+.|..++
T Consensus 190 ~Gei~v~l~N~~~~~v~I~~G~RIAQlVf~~~~~~ps~~~~~~~~~~~~~~~ 241 (286)
T PHA03131 190 RSGLQLKLYNYTDETIFLPAGSRICQVVFMHKDHLPSFFNPLLSARCLGPRI 241 (286)
T ss_pred CCEEEEEEEECCCCCEEECCCCEEEEEEEEecccCccccccccchhhcCCCc
Confidence 5888888877666665 7899999999888889999842 33445555555
No 64
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=20.96 E-value=1.4e+02 Score=20.93 Aligned_cols=53 Identities=28% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEE
Q 031993 59 THGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLE 126 (149)
Q Consensus 59 thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LE 126 (149)
..|.|++.-.+..+...+-+ ..-||+|+=|+.|-...|..+...|.=| .+++.
T Consensus 48 ~~G~v~~~~~~~~G~~~~~~-------------~~~~g~~fg~~~l~~~~~~~~~~~a~~~--~~~~~ 100 (214)
T COG0664 48 LSGIVKLYANTEDGREIILG-------------FLGPGDFFGELALLGGDPRSASAVALTD--VEVLE 100 (214)
T ss_pred EEeEEEEEEECCCCcEEEEE-------------EecCCchhhhHHHhcCCCccceEEEcce--EEEEE
Confidence 45777776665544443333 5679999999988877788888888766 44443
No 65
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=20.76 E-value=59 Score=26.34 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=23.3
Q ss_pred CCC-CCcccceeeecCCCceEEEeeec--CcCC
Q 031993 106 TRI-PDDAKLEAYGDETGTGLEIMVPK--HRVG 135 (149)
Q Consensus 106 trI-PedA~leAy~de~g~~LEi~VpK--~r~g 135 (149)
+++ |.+.++.+.-+....++||+||- +|+|
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~ei~vptcsyrmg 195 (195)
T cd08166 163 TRVSPDDPTLKQLILQNEVMHEIQVPTCSYRMG 195 (195)
T ss_pred eeccCCcchHHHhhcCCcceEEEECCcccccCC
Confidence 445 77788888888888899999995 3665
No 66
>PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold
Probab=20.74 E-value=4e+02 Score=20.63 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred cCceEEEEEecccc-cccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 32 DEQGYLIIISLPFA-DLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 32 de~gYLi~iSLPfv-d~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
|++|+|+-|--=-= .-..++.+|.| -.+++|.+-+.... ...+.++. .+...|+|-..+--+.|..-+|-
T Consensus 79 n~~~qL~~i~~~~~~~~~~~~itw~n---Gni~~i~~~~~~~~-----~~~~~~~~-y~~~~~~~~~~~~~l~~~~~~~~ 149 (197)
T PF15283_consen 79 NADGQLTKITESNNDSYSSYTITWEN---GNITSITTKSDGEE-----ENDTYKID-YTSKETKPIYNKPCLMLFDIYPI 149 (197)
T ss_pred CCCCceEEEEEECCCceEEEEEEEEC---CCEEEEEEeccCcc-----cceeEEEe-ecCccccccccccceEEecccCc
Confidence 46777776642221 23578888886 46788877765554 34444544 34456666444434455666776
Q ss_pred cccceeeecC
Q 031993 111 DAKLEAYGDE 120 (149)
Q Consensus 111 dA~leAy~de 120 (149)
|--..|||.+
T Consensus 150 ~~~~~ayy~g 159 (197)
T PF15283_consen 150 DLLQYAYYAG 159 (197)
T ss_pred cHHHhhhhcc
Confidence 6666788854
No 67
>PHA02542 41 41 helicase; Provisional
Probab=20.63 E-value=70 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCCCCCcccce------eeecCCCceEEEeeecCcCCCcc
Q 031993 105 PTRIPDDAKLE------AYGDETGTGLEIMVPKHRVGPEE 138 (149)
Q Consensus 105 ~trIPedA~le------Ay~de~g~~LEi~VpK~r~gpEE 138 (149)
++-|..||++- .||.+.| ..||.|-|+|.|+--
T Consensus 371 SG~IEqdAD~vl~l~r~~~~~~~~-~~eliv~KnR~G~~g 409 (473)
T PHA02542 371 SAGLPATADFMLAVIETEELAQMG-QQLVKQLKSRYGDKN 409 (473)
T ss_pred ccchHhhcCEEEEEecCcccccCC-eEEEEEecCCCCCCC
Confidence 67788888873 3444444 489999999999953
No 68
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=20.46 E-value=1.1e+02 Score=20.05 Aligned_cols=50 Identities=28% Similarity=0.529 Sum_probs=23.7
Q ss_pred EEeeCCCC-CCCCCCceeEEeeCCCCCCCcccceeee----cCCCceEEEeeecCcCC
Q 031993 83 FKLTDPSP-EHCPPGEFIREIPLPTRIPDDAKLEAYG----DETGTGLEIMVPKHRVG 135 (149)
Q Consensus 83 FkLtdps~-ehCPPGeFvreipL~trIPedA~leAy~----de~g~~LEi~VpK~r~g 135 (149)
|++.++.. -...||.|+. +.++ ++..-...+|- +.....|||+|=+...|
T Consensus 19 ~~~~~~~~~~~~~pGQ~v~-v~~~--~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G 73 (99)
T PF00970_consen 19 FKLPDPDQKLDFKPGQFVS-VRVP--INGKQVSRPYSPASSPDDKGYLEFAIKRYPNG 73 (99)
T ss_dssp EEESSTTTT-SSTTT-EEE-EEEE--ETTEEEEEEEEBCSSTTSSSEEEEEEEECTTS
T ss_pred EEECCCCcccccCcceEEE-EEEc--cCCcceecceeEeeecCCCCcEEEEEEeccCC
Confidence 44444433 5689999975 3333 33332233332 12222499999555333
No 69
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=20.15 E-value=1e+02 Score=25.45 Aligned_cols=59 Identities=25% Similarity=0.488 Sum_probs=39.8
Q ss_pred EEeecCCCceEEEEe--EecCCcceeeeccce-EEeeCCCCCCCCCCceeEEeeCCCCCCCcccc
Q 031993 53 TWWNNLTHGVVKISS--LSTACMPYIQRNDRT-FKLTDPSPEHCPPGEFIREIPLPTRIPDDAKL 114 (149)
Q Consensus 53 swrNt~thGivKI~c--vST~~~p~ikRhdRt-FkLtdps~ehCPPGeFvreipL~trIPedA~l 114 (149)
.|.+.+ .|.-+..+ -.-+||.|+-..+|. |+- ..+++.+|+| |..=+-+|.|...+.+|
T Consensus 160 ~W~~~l-~g~~r~r~~~n~~trmR~~~~~g~l~~~~-k~~~~~~~~~-~~pWf~~~~~~~~~~~i 221 (257)
T cd07422 160 RWSDDL-TGIDRLRYIVNAFTRMRFCTPDGRLDFSS-KGAPEDAPKG-LKPWFELPNRKTDDYTI 221 (257)
T ss_pred ccCccc-CccHHHHHHHHHhhceeeecCCCCEeecc-cCCcccCCCC-CCCceeCCCccCCCCcE
Confidence 466555 34433333 235799999998886 333 3367888888 88999999998765443
No 70
>PF03762 VOMI: Vitelline membrane outer layer protein I (VOMI) ; InterPro: IPR005515 VOMI binds tightly to ovomucin fibrils of the egg yolk membrane. The structure [] consists of three beta-sheets forming Greek key motifs, which are related by an internal pseudo three-fold symmetry. Furthermore, the structure of VOMI has strong similarity to the structure of the delta-endotoxin, as well as a carbohydrate-binding site in the top region of the common fold [].; GO: 0030704 vitelline membrane formation; PDB: 1VMO_B.
Probab=20.07 E-value=39 Score=27.10 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=10.6
Q ss_pred CCCCCCCceeEEeeCC
Q 031993 90 PEHCPPGEFIREIPLP 105 (149)
Q Consensus 90 ~ehCPPGeFvreipL~ 105 (149)
.|.||+|.|+.-++|-
T Consensus 16 ~~~CP~G~~a~Gf~lK 31 (176)
T PF03762_consen 16 WEMCPDGSYANGFQLK 31 (176)
T ss_dssp EEE-SSS--EEEEEEE
T ss_pred hhhCCCCCeEEEEEEE
Confidence 4789999999988873
Done!