Query 031993
Match_columns 149
No_of_seqs 23 out of 25
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 12:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fei_A Heat shock protein-rela 99.0 8.6E-09 3E-13 70.7 11.3 93 21-133 3-95 (102)
2 3gla_A Low molecular weight he 98.9 2E-08 6.9E-13 67.7 11.8 92 26-132 6-97 (100)
3 4eld_A MJ16.5-P1, small heat s 98.9 1.8E-08 6.2E-13 73.9 11.3 91 27-132 59-150 (161)
4 2wj5_A Heat shock protein beta 98.9 1.7E-08 5.6E-13 69.8 9.8 87 25-132 2-88 (101)
5 3l1e_A Alpha-crystallin A chai 98.8 7.7E-08 2.6E-12 67.1 11.5 90 25-135 3-92 (106)
6 1gme_A Heat shock protein 16.9 98.8 1E-07 3.5E-12 70.1 10.9 101 20-134 39-139 (151)
7 2y1y_A Alpha-crystallin B chai 98.6 4.1E-07 1.4E-11 61.3 9.9 82 31-133 3-84 (90)
8 2klr_A Alpha-crystallin B chai 98.6 3E-07 1E-11 70.1 9.9 96 26-142 65-160 (175)
9 3q9p_A Heat shock protein beta 98.6 4.7E-07 1.6E-11 60.8 9.7 83 29-132 2-84 (85)
10 3aab_A Putative uncharacterize 98.6 6.5E-07 2.2E-11 62.9 10.8 92 24-133 24-116 (123)
11 2bol_A TSP36, small heat shock 98.2 1.1E-05 3.7E-10 66.7 9.6 90 22-133 96-189 (314)
12 2bol_A TSP36, small heat shock 97.1 0.0026 9E-08 52.5 9.5 87 27-132 223-313 (314)
13 2k8q_A Protein SHQ1; beta-sand 89.6 1.7 5.7E-05 32.8 7.7 49 79-135 36-84 (134)
14 2xcm_C SGT1-like protein, cyto 88.1 3.6 0.00012 26.2 9.0 76 28-133 6-81 (92)
15 1rl1_A Suppressor of G2 allele 87.4 4.9 0.00017 26.9 9.6 77 27-133 12-88 (114)
16 3eud_A Protein SHQ1; CS domain 83.0 8.5 0.00029 28.6 8.4 52 76-135 47-98 (115)
17 1wh0_A Ubiquitin carboxyl-term 69.7 27 0.00092 25.2 7.8 86 43-132 13-110 (134)
18 3gla_A Low molecular weight he 53.3 29 0.00099 22.5 5.0 28 36-67 66-94 (100)
19 2exn_A Hypothetical protein BO 53.2 45 0.0015 23.6 6.3 33 78-120 22-54 (136)
20 3igf_A ALL4481 protein; two-do 49.4 9.1 0.00031 31.6 2.5 71 25-129 296-366 (374)
21 1f35_A Olfactory marker protei 46.1 29 0.00099 27.4 4.7 56 39-101 51-108 (162)
22 2p39_A Fibroblast growth facto 43.3 32 0.0011 26.0 4.5 43 58-104 54-96 (155)
23 1rp1_A Pancreatic lipase relat 39.0 38 0.0013 28.3 4.7 44 37-80 386-437 (450)
24 2hj8_A Interferon-induced 17 k 37.7 14 0.00047 23.6 1.5 45 92-139 39-84 (88)
25 2a13_A AT1G79260; structural g 37.3 64 0.0022 24.1 5.3 22 65-86 117-138 (166)
26 3k51_B Decoy receptor 3; DCR3, 36.0 23 0.00079 26.5 2.6 23 80-102 6-34 (176)
27 3j0f_I E2 envelope glycoprotei 34.1 91 0.0031 27.7 6.5 75 20-99 26-111 (423)
28 1hpl_A Lipase; hydrolase(carbo 33.8 57 0.0019 27.2 4.9 43 37-80 386-436 (449)
29 4gq2_M Nucleoporin NUP120; bet 32.0 1.1E+02 0.0037 27.7 6.8 60 4-69 211-276 (950)
30 2bsy_A Deoxyuridine 5'-triphos 32.0 51 0.0017 26.7 4.2 58 60-120 80-140 (278)
31 1gpl_A RP2 lipase; serine este 31.6 47 0.0016 26.9 4.0 43 37-80 369-419 (432)
32 1bu8_A Protein (pancreatic lip 29.8 53 0.0018 27.1 4.1 44 37-80 388-439 (452)
33 1ou8_A Stringent starvation pr 29.7 19 0.00064 26.7 1.2 28 9-36 72-99 (111)
34 2hg7_A Phage-like element PBSX 28.9 10 0.00034 28.4 -0.4 26 95-120 27-52 (110)
35 4f98_A Hypothetical protein; P 27.8 47 0.0016 22.7 2.9 23 18-41 36-58 (69)
36 1yfn_A Stringent starvation pr 25.6 24 0.00083 26.3 1.2 28 10-37 74-101 (118)
37 3q6c_A Probable receptor YHHM; 25.4 41 0.0014 23.5 2.3 33 100-132 12-55 (83)
38 1ou9_A Stringent starvation pr 24.4 26 0.0009 26.6 1.2 30 9-38 72-101 (129)
39 3urf_Z Tumor necrosis factor r 23.4 42 0.0014 25.0 2.2 22 81-102 5-32 (171)
40 2c9r_A COPC, copper resistance 23.0 1.7E+02 0.0058 19.9 5.0 37 26-62 55-91 (102)
41 3md3_A Nuclear and cytoplasmic 22.0 47 0.0016 21.4 2.0 36 98-136 4-39 (166)
42 1wo9_A HI-1, trypsin inhibitor 21.5 47 0.0016 19.6 1.7 11 91-101 2-12 (35)
43 3s7r_A Heterogeneous nuclear r 20.3 40 0.0014 20.3 1.2 33 98-133 15-47 (87)
44 2kr0_A Proteasomal ubiquitin r 20.2 3.6E+02 0.012 23.3 7.6 32 31-66 45-76 (411)
No 1
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=98.98 E-value=8.6e-09 Score=70.74 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=72.6
Q ss_pred cceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeE
Q 031993 21 GPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIR 100 (149)
Q Consensus 21 GPVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvr 100 (149)
|...-+-.|+|+++.|.+.+.||+++.+.++|+-. .+.+.|++-......+. +.. ..-|.|.|
T Consensus 3 g~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~----~~~L~I~g~~~~~~~~~-~~e------------r~~g~f~R 65 (102)
T 4fei_A 3 GPWTPAADWRDAGTHLDLLLDVPGVDAGTLALAED----GGQLTVSGERPGTEHLL-RSE------------RPSGRFVR 65 (102)
T ss_dssp EECCCCEEEEEETTEEEEEEECTTCCGGGCEEEEE----TTEEEEEEEECCCSSCS-SCC------------SEEEEEEE
T ss_pred CcccCcEEEEEcCCEEEEEEECCCCchHhEEEEEE----CCEEEEEEEEecCCCEE-EEE------------EeccEEEE
Confidence 55666789999999999999999999999999976 57899998764321111 111 13489999
Q ss_pred EeeCCCCCCCcccceeeecCCCceEEEeeecCc
Q 031993 101 EIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 101 eipL~trIPedA~leAy~de~g~~LEi~VpK~r 133 (149)
.|+||..+ +-.+++|-|+ .| +|+|-+||..
T Consensus 66 ~~~LP~~v-d~~~i~A~~~-~G-vL~I~lpK~~ 95 (102)
T 4fei_A 66 ELAFPEPV-RPASGVASLA-GG-VLTVRFEKLR 95 (102)
T ss_dssp EEECSSCB-CTTCCEEEEE-TT-EEEEEEEBSS
T ss_pred EEECCCCc-chhHcEEEEE-CC-EEEEEEEccC
Confidence 99999998 4457899995 45 7999999974
No 2
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=98.94 E-value=2e-08 Score=67.68 Aligned_cols=92 Identities=25% Similarity=0.373 Sum_probs=70.5
Q ss_pred eeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCC
Q 031993 26 AKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLP 105 (149)
Q Consensus 26 AktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~ 105 (149)
+-+|+|++++|.+.+.||+++.+.++|+-. .+.+.|++-...... ..+..|... -..-|.|.|.|+||
T Consensus 6 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~----~~~L~I~g~~~~~~~---~~~~~~~~~-----er~~g~f~r~~~LP 73 (100)
T 3gla_A 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMD----KGILSIRGERKSESS---TETERFSRI-----ERRYGSFHRRFALP 73 (100)
T ss_dssp CEEEEECSSEEEEEEECTTSCGGGCEEEEE----TTEEEEEEEECCGGG---SSGGGEEEE-----CCCCEEEEEEEECC
T ss_pred cEEEEECCCEEEEEEECCCCCHHHEEEEEE----CCEEEEEEEEcCcCc---cCCccEEEE-----eecceEEEEEEECC
Confidence 568999999999999999999999999987 478999987654321 112223222 12348999999999
Q ss_pred CCCCCcccceeeecCCCceEEEeeecC
Q 031993 106 TRIPDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 106 trIPedA~leAy~de~g~~LEi~VpK~ 132 (149)
..+ +-.+++|-|.. | +|+|-+||.
T Consensus 74 ~~v-d~~~i~A~~~~-G-vL~I~~pK~ 97 (100)
T 3gla_A 74 DSA-DADGITAAGRN-G-VLEIRIPKR 97 (100)
T ss_dssp TTB-CTTSCEEEEET-T-EEEEEEEBC
T ss_pred CCc-ChHHeEEEEeC-C-EEEEEEecC
Confidence 998 44578998864 4 699999996
No 3
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=98.91 E-value=1.8e-08 Score=73.94 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred eeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCC-CCCceeEEeeCC
Q 031993 27 KTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHC-PPGEFIREIPLP 105 (149)
Q Consensus 27 ktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehC-PPGeFvreipL~ 105 (149)
-+|+|++++|.|.+.||+++.+.++|+..+ +.+.|++-..... ....+ .|-.. -. .-|.|.|.|.||
T Consensus 59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~----~~L~I~g~~~~~~--~~~~~-~~~~~-----Er~~~g~f~R~~~LP 126 (161)
T 4eld_A 59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVG----DTLEIRAKRSPLM--ITESE-RIIYS-----EIPEEEEIYRTIKLP 126 (161)
T ss_dssp EEEEECSSEEEEEEECTTCCGGGEEEEEET----TEEEEEEECCCCC--CCSSC-EEEEE-----CSCCCCEEEEEEECS
T ss_pred eeEEEeCCEEEEEEECCCCChHhEEEEEEC----CEEEEEEEEcccc--cCCCc-eEEEE-----EeeccccEEEEEECC
Confidence 699999999999999999999999999874 7899988644311 00111 12111 12 458999999999
Q ss_pred CCCCCcccceeeecCCCceEEEeeecC
Q 031993 106 TRIPDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 106 trIPedA~leAy~de~g~~LEi~VpK~ 132 (149)
..+-. .+++|-|+ .| +|+|-+||.
T Consensus 127 ~~vd~-~~i~A~~~-nG-vL~I~lpK~ 150 (161)
T 4eld_A 127 ATVKE-ENASAKFE-NG-VLSVILPKA 150 (161)
T ss_dssp SCBCG-GGCEEEEE-TT-EEEEEEEBC
T ss_pred CCccc-ccEEEEEE-CC-EEEEEEEcC
Confidence 98844 45999995 45 799999996
No 4
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=98.88 E-value=1.7e-08 Score=69.79 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=67.0
Q ss_pred eeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 25 AAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 25 aAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
++-+|||++++|.+.+.||.++.+.++|+.. .|.+.|++--.... .+..|-. .||.|+|+|
T Consensus 2 ~~vdi~e~~~~~~v~~dlPG~~~edI~V~v~----~~~L~I~g~~~~~~-----~~~~~~~----------~eF~R~~~L 62 (101)
T 2wj5_A 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKVV----GDHVEVHARHEERP-----DEHGFIA----------REFHRRYRL 62 (101)
T ss_dssp CCCCCCCCSSCEEEEEECTTSCGGGEEEEEE----TTEEEEEEEEEECS-----STTCCEE----------EEEEEEEEC
T ss_pred CcEEEEEeCCEEEEEEECCCCcHHHeEEEEE----CCEEEEEEEEeccc-----CCCCEEE----------EEEEEEEEC
Confidence 4568999999999999999999999999987 47899998754321 0111111 249999999
Q ss_pred CCCCCCcccceeeecCCCceEEEeeecC
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~VpK~ 132 (149)
|..+- ..++.|.|.+.| +|+|-+||.
T Consensus 63 P~~vd-~~~i~A~~s~nG-vL~I~lPK~ 88 (101)
T 2wj5_A 63 PPGVD-PAAVTSALSPEG-VLSIQATPA 88 (101)
T ss_dssp CTTBC-TTCCEEEECTTS-EEEEEECBC
T ss_pred CCCcC-hhHCEEEECCCC-EEEEEEECC
Confidence 98873 346899996666 599999997
No 5
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=98.82 E-value=7.7e-08 Score=67.11 Aligned_cols=90 Identities=19% Similarity=0.290 Sum_probs=68.6
Q ss_pred eeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 25 AAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 25 aAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
++-.|+|++++|.+.+-||.++.+.++|+-.| |.+.|++-.... ..+..|.. .+|.|.|+|
T Consensus 3 g~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~----~~L~I~g~~~~~-----~~~~~~~~----------~eF~R~~~L 63 (106)
T 3l1e_A 3 GISEVRSDRDKFVIFLDVKHFSPEDLTVKVQE----DFVEIHGKHNER-----QDDHGYIS----------REFHRRYRL 63 (106)
T ss_dssp CSEEEEECSSEEEEEEECTTSCGGGEEEEEET----TEEEEEEEEEEE-----ETTTEEEE----------EEEEEEEEC
T ss_pred CceEEEEcCCEEEEEEECCCCChHHEEEEEEC----CEEEEEEEEccc-----cCCCCEEE----------EEEEEEEEC
Confidence 45689999999999999999999999999874 789999853211 11122221 259999999
Q ss_pred CCCCCCcccceeeecCCCceEEEeeecCcCC
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMVPKHRVG 135 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~VpK~r~g 135 (149)
|..+-. .+++|-|.+.| +|+|-+||.-..
T Consensus 64 P~~vd~-~~i~A~~s~~G-vL~I~~PK~~~~ 92 (106)
T 3l1e_A 64 PSNVDQ-SALSCSLSADG-MLTFSGPKIPSG 92 (106)
T ss_dssp CTTBCT-TSCEEEECTTS-EEEEEEEBCCCC
T ss_pred CCCcCh-hHcEEEECCCC-EEEEEEEccCcc
Confidence 988744 45899996566 699999998543
No 6
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=98.75 E-value=1e-07 Score=70.06 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=74.1
Q ss_pred ccceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCcee
Q 031993 20 YGPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFI 99 (149)
Q Consensus 20 ~GPVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFv 99 (149)
.+....+-+|||++++|.+.+-||+++.+.++|+-.+ .+.+.|++-...... ..+..|-.. -..-|.|.
T Consensus 39 ~~~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~---~~~L~I~g~~~~~~~---~~~~~~~~~-----Er~~g~F~ 107 (151)
T 1gme_A 39 AAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVED---GNVLVVSGERTKEKE---DKNDKWHRV-----ERSSGKFV 107 (151)
T ss_dssp HHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEET---TTEEEEEECCCCCCC---CTTCEEEEC-----CCCCCCEE
T ss_pred ccccCCceEEEEcCCEEEEEEECCCCChHHEEEEEec---CCEEEEEEEEccccc---cCCceEEEE-----eEeccEEE
Confidence 3445567899999999999999999999999999742 468889886543221 011222211 14569999
Q ss_pred EEeeCCCCCCCcccceeeecCCCceEEEeeecCcC
Q 031993 100 REIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRV 134 (149)
Q Consensus 100 reipL~trIPedA~leAy~de~g~~LEi~VpK~r~ 134 (149)
|.|+||..+-.| +++|-|+ .| +|+|-+||...
T Consensus 108 R~~~LP~~vd~~-~i~A~~~-nG-vL~I~lPK~~~ 139 (151)
T 1gme_A 108 RRFRLLEDAKVE-EVKAGLE-NG-VLTVTVPKAEV 139 (151)
T ss_dssp EEEECSSCCCGG-GCEEEEE-TT-EEEEEEECCCC
T ss_pred EEEECCCCcccc-ceEEEEE-CC-EEEEEEEccCc
Confidence 999999988554 6899994 45 79999999753
No 7
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=98.62 E-value=4.1e-07 Score=61.29 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=59.6
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCC
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPD 110 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPe 110 (149)
+++++|.|.+.||+++.+.++|+-. .+.+.|++-..... .+..|-. .||.|+|+||..+-.
T Consensus 3 ~~~~~~~v~~dlPG~~~edi~V~v~----~~~L~I~g~~~~~~-----~~~~~~~----------~ef~R~~~LP~~vd~ 63 (90)
T 2y1y_A 3 MEKDRFSVNLDVKHFSPEELKVKVL----GDVIEVHGKHEERQ-----DEHGFIS----------REFHRKYRIPADVDP 63 (90)
T ss_dssp ---CCEEEEEECTTSCGGGEEEEEE----TTEEEEEEEEEEEE-----CSSSEEE----------EEEEEEEECCTTBCG
T ss_pred cCCCEEEEEEECCCCcHHHeEEEEE----CCEEEEEEEEeccc-----CCCCEEE----------EEEEEEEECCCCcCh
Confidence 6789999999999999999999876 47899988643210 1111211 259999999988744
Q ss_pred cccceeeecCCCceEEEeeecCc
Q 031993 111 DAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~VpK~r 133 (149)
.++.|.|.+.| +|+|-+||..
T Consensus 64 -~~i~A~~~~~G-vL~I~~pK~~ 84 (90)
T 2y1y_A 64 -LTITSSMSSDG-VLTVNGPRKQ 84 (90)
T ss_dssp -GGCEEEECTTS-EEEEEECBC-
T ss_pred -hHcEEEECCCC-EEEEEEEcCC
Confidence 45999997666 5999999974
No 8
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=98.60 E-value=3e-07 Score=70.11 Aligned_cols=96 Identities=14% Similarity=0.241 Sum_probs=63.5
Q ss_pred eeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCC
Q 031993 26 AKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLP 105 (149)
Q Consensus 26 AktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~ 105 (149)
+-.|+|+++.|.|.+-||.++.+.++|+-. .|.+.|++--.... .+..|-. .||.|.|+||
T Consensus 65 ~~dv~e~~d~~~v~~dlPG~~~edI~V~v~----~~~L~I~g~~~~~~-----~~~~~~~----------reF~R~~~LP 125 (175)
T 2klr_A 65 LSEMRLEKDRFSVNLDVKHFSPEELKVKVL----GDVIEVHGKHEERQ-----DEHGFIS----------REFHRKYRIP 125 (175)
T ss_dssp ----CCCCSEEEEEECCSSCCGGGEEEEEE----TTEEEEEEEEEEEE-----ETTEEEE----------EEEEEEEECT
T ss_pred ceEEEEcCCeEEEEEECCCCChHHEEEEEE----CCEEEEEEEEcccc-----cCCceEE----------EEEEEEEECC
Confidence 468999999999999999999999999886 47899988653221 1112211 1499999999
Q ss_pred CCCCCcccceeeecCCCceEEEeeecCcCCCcceeEE
Q 031993 106 TRIPDDAKLEAYGDETGTGLEIMVPKHRVGPEEHEVF 142 (149)
Q Consensus 106 trIPedA~leAy~de~g~~LEi~VpK~r~gpEEhEVr 142 (149)
..+-. .+++|-|.+.|- |+|-+||......++.+.
T Consensus 126 ~~Vd~-~~i~A~~s~dGv-L~I~lPK~~~~~~~r~I~ 160 (175)
T 2klr_A 126 ADVDP-LTITSSLSSDGV-LTVNGPRKQVSGPERTIP 160 (175)
T ss_dssp TTCCT-TTCEEEECTTSC-EEEEEECC----------
T ss_pred CCcCh-hHeEEEEcCCCE-EEEEEECCCCCCCCeEEE
Confidence 88733 358999976674 999999974332234433
No 9
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=98.60 E-value=4.7e-07 Score=60.78 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=63.2
Q ss_pred eeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCCC
Q 031993 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRI 108 (149)
Q Consensus 29 IyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~trI 108 (149)
+.|+++.|.+.+-||.++.+.++|+-. .|.+.|++-...... ++-| --|+|.|.|+||..+
T Consensus 2 ~~E~~~~~~v~~dlPG~~~edi~V~v~----~~~L~I~g~~~~~~~-----~~~~----------~~~~F~R~~~LP~~v 62 (85)
T 3q9p_A 2 GSHTADRWRVSLDVNHFAPDELTVKTK----DGVVEITGKHAARQD-----EHGY----------ISRCFTRKYTLPPGV 62 (85)
T ss_dssp -CCCCCEEEEEEECTTTCCSEEEEEEE----TTEEEEEEEEC------------C----------CCEEEEEEEECCTTC
T ss_pred ccCcCCEEEEEEECCCCChHHEEEEEE----CCEEEEEEEEccccC-----CCCE----------EEEEEEEEEECCCCc
Confidence 579999999999999999999999876 478999987443210 1111 247999999999877
Q ss_pred CCcccceeeecCCCceEEEeeecC
Q 031993 109 PDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 109 PedA~leAy~de~g~~LEi~VpK~ 132 (149)
-.| +++|-|.+.| +|.|-+||-
T Consensus 63 d~~-~i~A~~~~~G-vL~I~lPK~ 84 (85)
T 3q9p_A 63 DPT-QVSSSLSPEG-TLTVEAPMP 84 (85)
T ss_dssp CGG-GCEEEECTTS-EEEEEEECC
T ss_pred ChH-HcEEEECCCC-EEEEEEEcC
Confidence 433 6899998777 599999984
No 10
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=98.60 E-value=6.5e-07 Score=62.93 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=69.5
Q ss_pred eeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEee
Q 031993 24 TAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIP 103 (149)
Q Consensus 24 taAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreip 103 (149)
.-+-+|+|++++|.+.+.||+++.+.++|+..+. +.+.|++-..... +..|-.. |- .- .|.|.|+
T Consensus 24 ~P~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~---~~L~I~g~~~~~~------~~~~~~~----Er-~~-~f~R~~~ 88 (123)
T 3aab_A 24 YPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQ---NELIIEAEREITE------PGVKYLT----QR-PK-YVRKVIR 88 (123)
T ss_dssp CSCEEEEEETTEEEEEEECCSCCGGGCEEEEETT---TEEEEEEECCCCC------CSCEEEE----CS-CS-EEEEEEE
T ss_pred CCcEEEEEcCCEEEEEEECCCCCHHHEEEEEeCC---CEEEEEEEEeccC------CCeEEEE----EE-eE-EEEEEEE
Confidence 3467999999999999999999999999998752 8899998765432 2222222 22 22 7999999
Q ss_pred CCCCCCCcccc-eeeecCCCceEEEeeecCc
Q 031993 104 LPTRIPDDAKL-EAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 104 L~trIPedA~l-eAy~de~g~~LEi~VpK~r 133 (149)
||..+-.+ ++ .|-|+ .| +|+|-+||..
T Consensus 89 LP~~vd~~-~i~~A~~~-~G-vL~I~lPK~~ 116 (123)
T 3aab_A 89 LPYNVAKD-AEISGKYE-NG-VLTIRIPIAG 116 (123)
T ss_dssp CSSEECTT-CCCEEEEE-TT-EEEEEEEGGG
T ss_pred CCCCcCcc-hhCeeEEc-CC-EEEEEEEcCC
Confidence 99987443 56 88885 34 7999999974
No 11
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=98.15 E-value=1.1e-05 Score=66.72 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=71.4
Q ss_pred ceeeeeeeeecCc----eEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCc
Q 031993 22 PVTAAKTIYEDEQ----GYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGE 97 (149)
Q Consensus 22 PVtaAktIyEde~----gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGe 97 (149)
....+.+|||+++ .|.|.+-||.++.+.++|+-. +|.+.|++-..... .+--.-|+
T Consensus 96 ~~~p~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~----~~~L~I~ge~~~~~----------------e~~r~~g~ 155 (314)
T 2bol_A 96 ELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKAD----KNKLVVRAQKSVAC----------------GDAAMSES 155 (314)
T ss_dssp TTGGGGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEE----TTEEEEEECCBSST----------------TCCCBCCC
T ss_pred cCCCccceEEcCCCCceEEEEEEECCCCchHHeEEEEE----CCEEEEEEEEeccC----------------CCCEEEEE
Confidence 3445789999999 999999999999999999855 68899988543211 01145699
Q ss_pred eeEEeeCCCCCCCcccceeeecCCCceEEEeeecCc
Q 031993 98 FIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 98 FvreipL~trIPedA~leAy~de~g~~LEi~VpK~r 133 (149)
|.|.|.||..+- -.+++|-|...| +|.|-+||..
T Consensus 156 F~R~~~LP~~Vd-~e~i~A~~~~nG-VL~I~lPK~~ 189 (314)
T 2bol_A 156 VGRSIPLPPSVD-RNHIQATITTDD-VLVIEAPVNE 189 (314)
T ss_dssp EEEEEECCTTBC-GGGCEEEECSSS-EEEEEEEBSS
T ss_pred EEEEEECCCCcc-ccccEEEEeCCC-EEEEEEeccC
Confidence 999999999883 346899998777 5999999974
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=97.13 E-value=0.0026 Score=52.51 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=59.8
Q ss_pred eeeeecC-c--eEEEEEec-ccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEe
Q 031993 27 KTIYEDE-Q--GYLIIISL-PFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREI 102 (149)
Q Consensus 27 ktIyEde-~--gYLi~iSL-Pfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvrei 102 (149)
-+|.|++ + .|.+-+.| |.++.+.++|+-. .|.+.|++-......-..|. --.=|+|.|.|
T Consensus 223 ~~i~e~~~~~~~~~v~~~ldPG~~~edi~V~v~----~~~LtI~ge~~~~~~~~~~~------------Er~~g~F~R~~ 286 (314)
T 2bol_A 223 LEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAK----GNKVYVHGVTGKEEKTENAS------------HSEHREFYKAF 286 (314)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCGGGEEEEES----SSEEEEEEEEC------------------------CEEEEEEE
T ss_pred CcEEEecCCCcEEEEEEEcCCCCChHHeEEEEE----CCEEEEEEEEeccCCceEEE------------EEeeeEEEEEE
Confidence 4677766 3 56666777 9999999999864 67899998754332111111 23458999999
Q ss_pred eCCCCCCCcccceeeecCCCceEEEeeecC
Q 031993 103 PLPTRIPDDAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 103 pL~trIPedA~leAy~de~g~~LEi~VpK~ 132 (149)
.||..+=. .+++|-|+ .| ||.|-+||.
T Consensus 287 ~LP~~vd~-~~i~A~~~-dG-vL~i~~Pk~ 313 (314)
T 2bol_A 287 VTPEVVDA-SKTQAEIV-DG-LMVVEAPLF 313 (314)
T ss_dssp ECSSEECG-GGCEEEEE-TT-EEEEEEEEE
T ss_pred ECCCCcCh-HHeEEEEe-CC-EEEEEEecC
Confidence 99988844 56888886 45 799999985
No 13
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=89.59 E-value=1.7 Score=32.82 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=39.4
Q ss_pred ccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEEEeeecCcCC
Q 031993 79 NDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVG 135 (149)
Q Consensus 79 hdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LEi~VpK~r~g 135 (149)
.+..|.+ ||+| |-.-+.||.++=||..-+|-||-.--.|+|-+||.-.|
T Consensus 36 ~~~~F~F------~~~P--YyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLpK~~~G 84 (134)
T 2k8q_A 36 QENMIIF------HLSP--YYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNKN 84 (134)
T ss_dssp CSSSEEE------CSSS--SCEEECCSSCEECCSSCEEEEETTTTEEEEEEEESSTT
T ss_pred eCCEEEE------ecCC--eEEEecCCCeeecCCCcceeEeccCCEEEEEEeCCCCC
Confidence 5778887 5888 44559999999999999999996444499999997554
No 14
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=88.12 E-value=3.6 Score=26.23 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=47.4
Q ss_pred eeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCCC
Q 031993 28 TIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTR 107 (149)
Q Consensus 28 tIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~tr 107 (149)
.-|+.++-..+.|-+|.++.+.++|.-.. ..++|++... ...+|..++.|...
T Consensus 6 ~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~----~~l~v~~~~~-----------------------~~~~y~~~~~L~~~ 58 (92)
T 2xcm_C 6 EYYQKPEEVVVTVFAKGIPKQNVNIDFGE----QILSVVIEVP-----------------------GEDAYYLQPRLFGK 58 (92)
T ss_dssp EEEEETTEEEEEEECCSCCGGGEEEEECS----SBEEEEECCT-----------------------TSCCEEECCBBSSC
T ss_pred cEEeCCCEEEEEEEECCCChHHeEEEEEC----CEEEEEEEcC-----------------------CCcEEEEeeEcCCc
Confidence 45666666667777777777777776542 2355554321 12479999999999
Q ss_pred CCCcccceeeecCCCceEEEeeecCc
Q 031993 108 IPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 108 IPedA~leAy~de~g~~LEi~VpK~r 133 (149)
|-.|.---.+. +..|||.+.|..
T Consensus 59 I~~~~s~~~~~---~~~l~i~L~K~~ 81 (92)
T 2xcm_C 59 IIPDKCKYEVL---STKIEICLAKAD 81 (92)
T ss_dssp BCGGGCEEEEC---SSCEEEEEEBSS
T ss_pred cCchhEEEEEE---CCEEEEEEEcCC
Confidence 86553222222 345999999964
No 15
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=87.37 E-value=4.9 Score=26.93 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=51.9
Q ss_pred eeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeCCC
Q 031993 27 KTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPT 106 (149)
Q Consensus 27 ktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL~t 106 (149)
-+.|+.++-..|.|-||.++...++|.-. ...++|++... ...+|.+++.|+.
T Consensus 12 ~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~----~~~l~v~~~~~-----------------------~~~~y~~~~~L~~ 64 (114)
T 1rl1_A 12 YDWYQTESQVVITLMIKNVQKNDVNVEFS----EKELSALVKLP-----------------------SGEDYNLKLELLH 64 (114)
T ss_dssp EEEEECSSEEEEEECCCSCCGGGEEEECS----SSCEEEEEECT-----------------------TSSEEEEEECBSS
T ss_pred ccEEeCCCEEEEEEEeCCCCHHHCEEEEE----cCEEEEEEEeC-----------------------CCcEEEEEeeCCC
Confidence 46788888888889999887777887654 33466665421 1147889999999
Q ss_pred CCCCcccceeeecCCCceEEEeeecCc
Q 031993 107 RIPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 107 rIPedA~leAy~de~g~~LEi~VpK~r 133 (149)
.|=.|.---.+ +. ..|||.++|..
T Consensus 65 ~I~~e~s~~~~--~~-~~l~i~L~K~~ 88 (114)
T 1rl1_A 65 PIIPEQSTFKV--LS-TKIEIKLKKPE 88 (114)
T ss_dssp CCCGGGEEEEE--CS-SSEEEEEECSS
T ss_pred cCCccccEEEE--EC-CEEEEEEEcCC
Confidence 98554322222 22 45999999964
No 16
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=83.04 E-value=8.5 Score=28.60 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=41.2
Q ss_pred eeeccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecCCCceEEEeeecCcCC
Q 031993 76 IQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVG 135 (149)
Q Consensus 76 ikRhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de~g~~LEi~VpK~r~g 135 (149)
+-=.++.|++. |+| |-.-+-||.+|=||.+-.|-||-.--.+.|-+||.-.|
T Consensus 47 i~vd~~~F~F~------~~P--YyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK~~~G 98 (115)
T 3eud_A 47 IIIQENMIIFH------LSP--YYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNKN 98 (115)
T ss_dssp EEEETTEEEEE------ETT--EEEEEECSSCEECSTTCEEEEETTTTEEEEEEEESSTT
T ss_pred EEEeCCEEEEe------cCC--eEEEEecCcceecCCCcceEEeCCCcEEEEEEcCCcCC
Confidence 33456788875 888 55569999999999998999995555599999998555
No 17
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=69.67 E-value=27 Score=25.20 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=55.2
Q ss_pred ccccccceeEEEeec-CCCceEEEEeEec-CCcceeeeccceEEeeC--CC------CCCCCCC-ceeEEeeCCCCCC-C
Q 031993 43 PFADLKRVKVTWWNN-LTHGVVKISSLST-ACMPYIQRNDRTFKLTD--PS------PEHCPPG-EFIREIPLPTRIP-D 110 (149)
Q Consensus 43 Pfvd~~~vkvswrNt-~thGivKI~cvST-~~~p~ikRhdRtFkLtd--ps------~ehCPPG-eFvreipL~trIP-e 110 (149)
|++++..++..|-.+ .++=.|.|-.-.. ....-|.-..+.|++.- +. +.-|.|. .|.-++.|-..|- |
T Consensus 13 ~~~~~~~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe 92 (134)
T 1wh0_A 13 SMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPE 92 (134)
T ss_dssp GSEEESCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEE
T ss_pred ccccccCCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCch
Confidence 788999999999988 7765555553221 12334555566666542 22 2245444 7999999999885 4
Q ss_pred cccceeeecCCCceEEEeeecC
Q 031993 111 DAKLEAYGDETGTGLEIMVPKH 132 (149)
Q Consensus 111 dA~leAy~de~g~~LEi~VpK~ 132 (149)
+. .|.-.++-+||.+-|.
T Consensus 93 ~S----~~~v~~~kIeI~L~K~ 110 (134)
T 1wh0_A 93 QC----TFCFTASRIDICLRKR 110 (134)
T ss_dssp EE----EEEECSSEEEEEEEES
T ss_pred hC----EEEEeCCEEEEEEEEC
Confidence 33 3333446799999886
No 18
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=53.35 E-value=29 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.8
Q ss_pred EEEEEeccc-ccccceeEEEeecCCCceEEEEe
Q 031993 36 YLIIISLPF-ADLKRVKVTWWNNLTHGVVKISS 67 (149)
Q Consensus 36 YLi~iSLPf-vd~~~vkvswrNt~thGivKI~c 67 (149)
|--.+.||. +|.+.++-+.+ +|+++|.-
T Consensus 66 f~r~~~LP~~vd~~~i~A~~~----~GvL~I~~ 94 (100)
T 3gla_A 66 FHRRFALPDSADADGITAAGR----NGVLEIRI 94 (100)
T ss_dssp EEEEEECCTTBCTTSCEEEEE----TTEEEEEE
T ss_pred EEEEEECCCCcChHHeEEEEe----CCEEEEEE
Confidence 555799997 89999988876 49999864
No 19
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=53.16 E-value=45 Score=23.61 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=27.2
Q ss_pred eccceEEeeCCCCCCCCCCceeEEeeCCCCCCCcccceeeecC
Q 031993 78 RNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDE 120 (149)
Q Consensus 78 RhdRtFkLtdps~ehCPPGeFvreipL~trIPedA~leAy~de 120 (149)
.+||.|.|+|. .|.|+. ..+.|.=|.|.+-+|.
T Consensus 22 ~~DR~wmlvd~------~G~~lt----~r~~P~Lali~~~~~~ 54 (136)
T 2exn_A 22 AYQKRWLVAND------AGQWLN----RDLCPRLAEVSVELRM 54 (136)
T ss_dssp GTCCSEEEEET------TSCEEC----TTTCGGGGCCEEEECS
T ss_pred ccCCcEEEEeC------CCCEEE----ccCCccccEEEEEecC
Confidence 88999999986 488873 3468888999998887
No 20
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=49.39 E-value=9.1 Score=31.58 Aligned_cols=71 Identities=28% Similarity=0.257 Sum_probs=45.6
Q ss_pred eeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 25 AAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 25 aAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
+.+.+.-|..+|.+.+-|||+|...++++=+. .-+-|+ -|.|-|-|+|
T Consensus 296 ~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~g----deL~v~----------------------------~g~~rR~i~L 343 (374)
T 3igf_A 296 APKPITIDTHNRQVRLFLPGFDKKQVKLTQYG----PEVTVE----------------------------AGDQRRNIFL 343 (374)
T ss_dssp SCCSEEEETTTTEEEEECTTCCGGGCEEEEET----TEEEEE----------------------------ETTEEEEEEC
T ss_pred CCCCEEEEeccEEEEEECCCCCHHHeEEEEEC----CeEEEE----------------------------ECCEeecccC
Confidence 34555546669999999999999999987541 122222 1889999999
Q ss_pred CCCCCCcccceeeecCCCceEEEee
Q 031993 105 PTRIPDDAKLEAYGDETGTGLEIMV 129 (149)
Q Consensus 105 ~trIPedA~leAy~de~g~~LEi~V 129 (149)
|.-+=.-.--.|-|++ ..|.|-.
T Consensus 344 P~~L~~~~v~~A~~~~--~~L~i~~ 366 (374)
T 3igf_A 344 PPALSGRPITGAKFQN--NYLIISF 366 (374)
T ss_dssp CTTTTTCCEEEEEEET--TEEEEEE
T ss_pred CHHHcCCCccccEEEC--CEEEEEE
Confidence 9876433223333333 2366644
No 21
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=46.14 E-value=29 Score=27.35 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=38.5
Q ss_pred EEecccccccceeEEEeec--CCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEE
Q 031993 39 IISLPFADLKRVKVTWWNN--LTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIRE 101 (149)
Q Consensus 39 ~iSLPfvd~~~vkvswrNt--~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvre 101 (149)
+-+|-|+..|++++.|+|. .+.|.|.|.+.|---.|=+ |--||-. -.=|-|-|.|.
T Consensus 51 VYrlDF~~~q~L~F~~W~v~l~~pGkvtitgtsQ~WTPDL-----T~LMTRQ--lLeP~~~Fwr~ 108 (162)
T 1f35_A 51 VYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDL-----TNLMTRQ--LLDPAAIFWRK 108 (162)
T ss_dssp EEEEECSCCSSEEEEEEEEEESSSEEEEEEEBCTTCCTTT-----CCCBGGG--BCSSCEEEEEC
T ss_pred eEEecccccceeeEEEEEEEEcCCCeEEEEeeccccCcch-----HHHHHhc--ccchhhhhhhc
Confidence 3468899999999999997 4778999999887666632 2222211 12366777775
No 22
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens}
Probab=43.32 E-value=32 Score=25.96 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCceEEEEeEecCCcceeeeccceEEeeCCCCCCCCCCceeEEeeC
Q 031993 58 LTHGVVKISSLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPL 104 (149)
Q Consensus 58 ~thGivKI~cvST~~~p~ikRhdRtFkLtdps~ehCPPGeFvreipL 104 (149)
...|+|.|.++.|.+-=-+.+.+|.|--.+.++|.| +.+|.=+
T Consensus 54 v~~g~V~Ikgv~s~~YLcMn~~G~Lygs~~~t~edC----~F~E~~~ 96 (155)
T 2p39_A 54 EDAGFVVITGVMSRRYLCMDFRGNIFGSHYFDPENC----RFQHQTL 96 (155)
T ss_dssp CGGGEEEEEETTTTEEEEECTTSCEEEESSCCTTTS----CEEEEEC
T ss_pred ecCCEEEEEEeccCcEEEECCCCCEeecCccCcCCc----EEEEEEc
Confidence 456999999999998777889999999888888888 3455444
No 23
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A
Probab=39.04 E-value=38 Score=28.32 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.4
Q ss_pred EEEEecccccccceeEEEeecCCC--------ceEEEEeEecCCcceeeecc
Q 031993 37 LIIISLPFADLKRVKVTWWNNLTH--------GVVKISSLSTACMPYIQRND 80 (149)
Q Consensus 37 Li~iSLPfvd~~~vkvswrNt~th--------GivKI~cvST~~~p~ikRhd 80 (149)
|+..-.+.-++++||+.|.|..-. ..|+|....|......++.|
T Consensus 386 li~~~~dlG~l~~v~~~W~~~~~~~~~p~~~i~~I~V~~~e~~~~~~FC~~~ 437 (450)
T 1rp1_A 386 EFDAKLDVGTIEKVKFLWNNNVVNPTFPKVGAAKITVQKGEEKTVHSFCSES 437 (450)
T ss_dssp EEEESSCCSSEEEEEEEEEEC--CTTCCCEEEEEEEEEETTCSSCEEEECSC
T ss_pred EEECCCCCCCceEEEEEEECCCCCCCCCeEEEEEEEEEeCCCCCeEEecCCC
Confidence 444445677899999999976432 34555555555555555444
No 24
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=37.66 E-value=14 Score=23.65 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCCCCceeEEeeCCCC-CCCcccceeeecCCCceEEEeeecCcCCCcce
Q 031993 92 HCPPGEFIREIPLPTR-IPDDAKLEAYGDETGTGLEIMVPKHRVGPEEH 139 (149)
Q Consensus 92 hCPPGeFvreipL~tr-IPedA~leAy~de~g~~LEi~VpK~r~gpEEh 139 (149)
..||.....- +.++ +-+|..|+.|--..|+.|.+++ +.+.|+|-|
T Consensus 39 gip~~~qrL~--~~Gk~L~D~~tL~~~~I~~g~~i~l~~-~~~gg~~~~ 84 (88)
T 2hj8_A 39 GVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFMNL-RLRGGLEHH 84 (88)
T ss_dssp CSCTTTEEEE--SSSSCCCTTSBHHHHHCSTTCEEEEEE-C--------
T ss_pred CCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEE-EcCCCcccc
Confidence 4566554332 2343 4567789999999999999888 566777765
No 25
>2a13_A AT1G79260; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP: b.60.1.8 PDB: 2q4n_A 3emm_A*
Probab=37.28 E-value=64 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=13.3
Q ss_pred EEeEecCCcceeeeccceEEee
Q 031993 65 ISSLSTACMPYIQRNDRTFKLT 86 (149)
Q Consensus 65 I~cvST~~~p~ikRhdRtFkLt 86 (149)
+..-+.+|.|+.|.-.|.|+|.
T Consensus 117 l~t~~I~r~~~a~~~~R~y~l~ 138 (166)
T 2a13_A 117 LKSDLVGNASKVKEISREFELV 138 (166)
T ss_dssp EEEEEEESCSSEEEEEEEEEEE
T ss_pred EEEccEEecCcchhcEEEEEEe
Confidence 3334556667776666777764
No 26
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=35.97 E-value=23 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.775 Sum_probs=16.5
Q ss_pred cceEEeeCCCCC------CCCCCceeEEe
Q 031993 80 DRTFKLTDPSPE------HCPPGEFIREI 102 (149)
Q Consensus 80 dRtFkLtdps~e------hCPPGeFvrei 102 (149)
-+||+-.|+... .||||.|+.+-
T Consensus 6 ~~~y~~~d~~t~~~~cC~~CppG~~~~~~ 34 (176)
T 3k51_B 6 TPTYPWRDAETGERLVCAQCPPGTFVQRP 34 (176)
T ss_dssp CCEEEEECCC--CEEEEECBCTTEEEEEC
T ss_pred CCcccccCcCCCCCCCCCCCCCCceeCcc
Confidence 468888888655 59999998753
No 27
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=34.14 E-value=91 Score=27.71 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=44.2
Q ss_pred ccceeeeeeeeecCceEE-EEEeccc-ccccc----eeEEEee-cCCCceEEE----EeEecCCcceeeeccceEEeeCC
Q 031993 20 YGPVTAAKTIYEDEQGYL-IIISLPF-ADLKR----VKVTWWN-NLTHGVVKI----SSLSTACMPYIQRNDRTFKLTDP 88 (149)
Q Consensus 20 ~GPVtaAktIyEde~gYL-i~iSLPf-vd~~~----vkvswrN-t~thGivKI----~cvST~~~p~ikRhdRtFkLtdp 88 (149)
.-||.--+---|-++||| |-+|.-| +|..- -|...-. ...|.|--+ --|+|++.=.|--+---|-|+
T Consensus 26 ~SPIaIE~V~sea~DG~lrIQ~SaQ~Gl~~sg~~~~~k~RYm~~~~~~~i~e~~~~~l~v~TS~pC~i~~~~GyFiLA-- 103 (423)
T 3j0f_I 26 FSPVKIEQVWDEADDNTIRIQTSAQFGYDQSGAASANKYRYMSLKQDHTVKEGTMDDIKISTSGPCRRLSYKGYFLLA-- 103 (423)
T ss_pred CCcceeeeeeccCCCceEEEEEeeeeccccCCCcCcceEEEecccCCCCceecccceEEEEecCCceEecCcceEEEE--
Confidence 345554445556788988 5566544 33221 2333320 123333222 356788877777778889998
Q ss_pred CCCCCCCCcee
Q 031993 89 SPEHCPPGEFI 99 (149)
Q Consensus 89 s~ehCPPGeFv 99 (149)
.||||+.+
T Consensus 104 ---~CPpGdsi 111 (423)
T 3j0f_I 104 ---KCPPGDSV 111 (423)
T ss_pred ---ECcCCCeE
Confidence 89999985
No 28
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19
Probab=33.79 E-value=57 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.365 Sum_probs=26.1
Q ss_pred EEEEecccccccceeEEEeecCCC--------ceEEEEeEecCCcceeeecc
Q 031993 37 LIIISLPFADLKRVKVTWWNNLTH--------GVVKISSLSTACMPYIQRND 80 (149)
Q Consensus 37 Li~iSLPfvd~~~vkvswrNt~th--------GivKI~cvST~~~p~ikRhd 80 (149)
|+..-.+.-++++||+.|.|..-. ..|+|.. .|....++++.|
T Consensus 386 li~~~~dlG~l~~v~~~W~~~~~~~~~p~~~i~~I~V~~-e~~~~~~fC~~~ 436 (449)
T 1hpl_A 386 EFDSDVEVGDLEKVKFIWYNNVINLTLPKVGASKITVER-NDGSVFNFCSEE 436 (449)
T ss_dssp EEEESSCCCSEEEEEEEEEECSCCTTCCCEEEEEEEEEC-TTSCEEEEECCC
T ss_pred EEeCCCCCCCceEEEEEEECCCCCCCCCeEEEEEEEEEe-CCCCeeeecCCC
Confidence 444445678899999999986432 3445555 444444445443
No 29
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.05 E-value=1.1e+02 Score=27.74 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=37.9
Q ss_pred CCCCccccccccccc-----ccc-ceeeeeeeeecCceEEEEEecccccccceeEEEeecCCCceEEEEeEe
Q 031993 4 VEPPWLHEFTGVMRN-----VYG-PVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLS 69 (149)
Q Consensus 4 ~ep~W~~~fsGvm~~-----~~G-PVtaAktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~cvS 69 (149)
++.+|+..+.|.+.. -++ |.+++-..+-+++.|||.+|+- +++|+ +|..++.+|.--.++
T Consensus 211 ~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lftl~~D----~~LRi--Wsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 211 DDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYNVLVMLSLD----YKLKV--LDLSTNQCVETIELS 276 (950)
T ss_dssp CCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTTEEEEEETT----CEEEE--EETTTTEEEEEEECC
T ss_pred cCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCcEEEEEECC----CEEEE--EECCCCCeEeeeccc
Confidence 467899999888752 122 4455556678899999999963 55665 457888777655443
No 30
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer, nucleotide metabolism, structural proteomics in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A* 2we3_A*
Probab=31.96 E-value=51 Score=26.73 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=37.3
Q ss_pred CceEEEEeEecCCcc-eeeeccceEEeeCCCCCCCCCCce--eEEeeCCCCCCCcccceeeecC
Q 031993 60 HGVVKISSLSTACMP-YIQRNDRTFKLTDPSPEHCPPGEF--IREIPLPTRIPDDAKLEAYGDE 120 (149)
Q Consensus 60 hGivKI~cvST~~~p-~ikRhdRtFkLtdps~ehCPPGeF--vreipL~trIPedA~leAy~de 120 (149)
-|.|||.+...+..| .|+++|+...|..- ..+-|+-= --.++||.+- .||-+.=|..+
T Consensus 80 rGei~v~l~N~~~~~ftI~pGdv~vqL~~~--~~~~p~i~~~~~~~~lP~~~-~~AG~DL~a~~ 140 (278)
T 2bsy_A 80 TGELRLILQNQRRYNSTLRPSELKIHLAAF--RYATPQMEEDKGPINHPQYP-GDVGLDVSLPK 140 (278)
T ss_dssp CSCEEEEEEESSSSCEEECTTSCEEEEEEE--EEECCCC----CCBCCCSST-TCCCEEEECSS
T ss_pred CceEEEEEEcCCCCCEEEeCCcEEEEEeee--eeecccccccCccccCCccc-cccccceeecC
Confidence 588999999999888 57888877666532 23333310 1356788886 77754444433
No 31
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A
Probab=31.59 E-value=47 Score=26.89 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=25.5
Q ss_pred EEEEecccccccceeEEEeecCCC--------ceEEEEeEecCCcceeeecc
Q 031993 37 LIIISLPFADLKRVKVTWWNNLTH--------GVVKISSLSTACMPYIQRND 80 (149)
Q Consensus 37 Li~iSLPfvd~~~vkvswrNt~th--------GivKI~cvST~~~p~ikRhd 80 (149)
|+....+.-++++||+.|.|+.-. ..|.|....|.. .++++.|
T Consensus 369 li~~~~~lG~l~~v~~~W~~~~~~~~~~~~~i~~I~v~~~e~~~-~~fC~~~ 419 (432)
T 1gpl_A 369 EFDSDVDVGDLQMVKFIWYNNVINPTLPRVGASKIIVETNVGKQ-FNFCSPE 419 (432)
T ss_dssp EEEESSCCCSEEEEEEEEEESSCCTTCCEEEEEEEEEECTTSCE-EEEECSC
T ss_pred EEeCCCCCCCceEEEEEEEcCCCCCCCCeEEEEEEEEEeCCCCC-ceecCCC
Confidence 333445678899999999986432 234444444444 4455444
No 32
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Probab=29.77 E-value=53 Score=27.06 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=25.2
Q ss_pred EEEEecccccccceeEEEeecCCC--------ceEEEEeEecCCcceeeecc
Q 031993 37 LIIISLPFADLKRVKVTWWNNLTH--------GVVKISSLSTACMPYIQRND 80 (149)
Q Consensus 37 Li~iSLPfvd~~~vkvswrNt~th--------GivKI~cvST~~~p~ikRhd 80 (149)
|+....+.-++++||+.|.|..-. ..|+|....|......++.|
T Consensus 388 li~~~~dlG~l~~v~~~W~~~~~~~~~p~~~i~~I~V~~~e~~~~~~FC~~~ 439 (452)
T 1bu8_A 388 DIDVDINVGEIQKVKFLWNNKVINLFRPTLGASQITVQSGVDGKEYNFCSSD 439 (452)
T ss_dssp EEEESSCCCSEEEEEEEEEC------CCCBEEEEEEEEETTTCCEEEEECCC
T ss_pred EEeCCCCCCCceEEEEEEECCCCCCCCCeEEEEEEEEEeCCCCCeEEecCCC
Confidence 333445678899999999976422 23555555555555455444
No 33
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=29.75 E-value=19 Score=26.66 Aligned_cols=28 Identities=43% Similarity=0.643 Sum_probs=25.0
Q ss_pred cccccccccccccceeeeeeeeecCceE
Q 031993 9 LHEFTGVMRNVYGPVTAAKTIYEDEQGY 36 (149)
Q Consensus 9 ~~~fsGvm~~~~GPVtaAktIyEde~gY 36 (149)
.-.|+|+-++++=|+.|...||--|+|-
T Consensus 72 ~ARFgGv~~~i~VP~~AV~aIyArEnG~ 99 (111)
T 1ou8_A 72 NARFKGVSRELYIPMGAALAIYARENGD 99 (111)
T ss_dssp EEEETTEEEEEEEEGGGEEEEEETTTCC
T ss_pred EEEECCEeEEEEEehHhheEeeeeccCC
Confidence 3479999999999999999999888775
No 34
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=28.92 E-value=10 Score=28.45 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.8
Q ss_pred CCceeEEeeCCCCCCCcccceeeecC
Q 031993 95 PGEFIREIPLPTRIPDDAKLEAYGDE 120 (149)
Q Consensus 95 PGeFvreipL~trIPedA~leAy~de 120 (149)
-|.||+|--|..+||..+.|++++++
T Consensus 27 dGsYI~eW~l~AP~PT~~eL~~wwee 52 (110)
T 2hg7_A 27 NGSYIEKWNLRAPLPTQAELETWWEE 52 (110)
T ss_dssp SCEEEEEECSSSCCCCHHHHHHHHHH
T ss_pred CcchHHhhccCCCCCCHHHHHHHHHH
Confidence 47999999999999999999998875
No 35
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=27.75 E-value=47 Score=22.68 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=17.9
Q ss_pred ccccceeeeeeeeecCceEEEEEe
Q 031993 18 NVYGPVTAAKTIYEDEQGYLIIIS 41 (149)
Q Consensus 18 ~~~GPVtaAktIyEde~gYLi~iS 41 (149)
+.||.|.|-+| |||.+|=+-.|+
T Consensus 36 ~~C~Vvpa~Mt-Y~DS~G~~~~l~ 58 (69)
T 4f98_A 36 TRTGVVPVTVV-YEDHSGELHKIR 58 (69)
T ss_dssp TCCSEEEEEEE-EECTTSCEEEEE
T ss_pred CccceEccEEE-EEcCCCCEEEEE
Confidence 58998887665 999999776654
No 36
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=25.58 E-value=24 Score=26.27 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.9
Q ss_pred ccccccccccccceeeeeeeeecCceEE
Q 031993 10 HEFTGVMRNVYGPVTAAKTIYEDEQGYL 37 (149)
Q Consensus 10 ~~fsGvm~~~~GPVtaAktIyEde~gYL 37 (149)
-.|+|+-++++=|+.|...||--|+|-=
T Consensus 74 ARFgGv~~~i~VP~~AV~aIyArEnG~G 101 (118)
T 1yfn_A 74 ARFGGIPRQVSVPLAAVLAIYARENGAG 101 (118)
T ss_dssp EEETTEEEEEEEEGGGEEEEEETTTCCE
T ss_pred EEECCEeEEEEEehHhheEeeeeecCCc
Confidence 4799999999999999999998877753
No 37
>3q6c_A Probable receptor YHHM; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.60A {Klebsiella variicola at-22}
Probab=25.38 E-value=41 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=21.1
Q ss_pred EEeeCCCCCC---------Ccccceeeec--CCCceEEEeeecC
Q 031993 100 REIPLPTRIP---------DDAKLEAYGD--ETGTGLEIMVPKH 132 (149)
Q Consensus 100 reipL~trIP---------edA~leAy~d--e~g~~LEi~VpK~ 132 (149)
||+|.|+|=+ +|-..++||. +.|.-+|..|+.+
T Consensus 12 r~~~~~~~rsrq~e~~~~~~~~~Y~itF~~~~~G~~~ef~v~~~ 55 (83)
T 3q6c_A 12 REKVINDRRSRQQTVTPAGSEMRYEASFRPENGGLEVVFRLDAP 55 (83)
T ss_dssp EEEECC--------------CEEEEEEEEEC--CCCEEEEECHH
T ss_pred eeeeCCCcccccccccCCCCceEEEEEEEECCCCceEEEEECHH
Confidence 7788886644 6678888888 4588889888754
No 38
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=24.41 E-value=26 Score=26.56 Aligned_cols=30 Identities=40% Similarity=0.586 Sum_probs=25.7
Q ss_pred cccccccccccccceeeeeeeeecCceEEE
Q 031993 9 LHEFTGVMRNVYGPVTAAKTIYEDEQGYLI 38 (149)
Q Consensus 9 ~~~fsGvm~~~~GPVtaAktIyEde~gYLi 38 (149)
.-.|+|+-++++=|+.|...||--|+|-=.
T Consensus 72 ~ARFgGv~~~I~VP~~AV~aIyArEnG~Gm 101 (129)
T 1ou9_A 72 NARFKGVSRELYIPMGAALAIYARENGDGV 101 (129)
T ss_dssp EEEETTEEEEEEEEGGGEEEEEETTTCCEE
T ss_pred EEEECCEeEEEEEehHheeEeeecccCccc
Confidence 347999999999999999999988877643
No 39
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=23.40 E-value=42 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=16.0
Q ss_pred ceEEeeCCCCC------CCCCCceeEEe
Q 031993 81 RTFKLTDPSPE------HCPPGEFIREI 102 (149)
Q Consensus 81 RtFkLtdps~e------hCPPGeFvrei 102 (149)
+||+=.|+... .||||.|+.+-
T Consensus 5 ~~y~~~D~~t~~~~cC~~CppG~~~~~~ 32 (171)
T 3urf_Z 5 PKYLHYDEETSHQLLCDKCPPGTYLKQH 32 (171)
T ss_dssp CCCEEECCCSSSCCEEECBCTTEEEEEC
T ss_pred CcccccCCCCCCCCCCCCCCCCceeccc
Confidence 56777777655 58999998753
No 40
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=22.95 E-value=1.7e+02 Score=19.87 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.9
Q ss_pred eeeeeecCceEEEEEecccccccceeEEEeecCCCce
Q 031993 26 AKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGV 62 (149)
Q Consensus 26 AktIyEde~gYLi~iSLPfvd~~~vkvswrNt~thGi 62 (149)
.+.-...+++-.+.+.|+-.......|.||-.-.+|-
T Consensus 55 ~~~~~~~~~~~~~~~~l~~L~~G~YtV~WrvvS~DGH 91 (102)
T 2c9r_A 55 AAVSGGGDPKTMVITPASPLTAGTYKVDWRAVSSDTF 91 (102)
T ss_dssp EEEEECSSTTEEEEEESSCCCSEEEEEEEEECCTTCC
T ss_pred ccceecCCCCcEEEEECCCCCCceEEEEEEEEecCCC
Confidence 4444444667788888987778899999998777764
No 41
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=22.03 E-value=47 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=25.5
Q ss_pred eeEEeeCCCCCCCcccceeeecCCCceEEEeeecCcCCC
Q 031993 98 FIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHRVGP 136 (149)
Q Consensus 98 FvreipL~trIPedA~leAy~de~g~~LEi~VpK~r~gp 136 (149)
||+-||..+ - +..|..+|..-|.+.+|.+++.+.+.
T Consensus 4 ~V~nlp~~~--t-~~~l~~~f~~~G~i~~v~i~~~~~~~ 39 (166)
T 3md3_A 4 YVGNLDKAI--T-EDILKQYFQVGGPIANIKIMIDKNNK 39 (166)
T ss_dssp EEEEEETTC--C-HHHHHHHHGGGSCEEEEEEECCCC-C
T ss_pred EECCCCCcC--C-HHHHHHHHHhcCCeEEEEEEECCCCC
Confidence 556555433 2 45799999999999999998765543
No 42
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=21.45 E-value=47 Score=19.64 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=8.8
Q ss_pred CCCCCCceeEE
Q 031993 91 EHCPPGEFIRE 101 (149)
Q Consensus 91 ehCPPGeFvre 101 (149)
+.|+||+-++.
T Consensus 2 ~~c~pG~ti~~ 12 (35)
T 1wo9_A 2 GECTPGQTKKQ 12 (35)
T ss_dssp CSCCTTCEEEE
T ss_pred CcCCCCCEEEC
Confidence 57999998764
No 43
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=20.31 E-value=40 Score=20.33 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=24.0
Q ss_pred eeEEeeCCCCCCCcccceeeecCCCceEEEeeecCc
Q 031993 98 FIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPKHR 133 (149)
Q Consensus 98 FvreipL~trIPedA~leAy~de~g~~LEi~VpK~r 133 (149)
||.-+| ..+ .+..|+.+|..-|.+.++.++..+
T Consensus 15 ~V~nlp--~~~-t~~~l~~~F~~~G~i~~v~i~~~~ 47 (87)
T 3s7r_A 15 FVGGLS--WDT-SKKDLKDYFTKFGEVVDCTIKMDP 47 (87)
T ss_dssp EEECCC--TTC-CHHHHHHHHTTTSCEEEEEEEECT
T ss_pred EEeCCC--CCC-CHHHHHHHHHhCCCEEEEEEeecC
Confidence 555444 334 456799999999999999887654
No 44
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=20.25 E-value=3.6e+02 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=22.0
Q ss_pred ecCceEEEEEecccccccceeEEEeecCCCceEEEE
Q 031993 31 EDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKIS 66 (149)
Q Consensus 31 Ede~gYLi~iSLPfvd~~~vkvswrNt~thGivKI~ 66 (149)
...+|||++.. .+-.-+.|.|+|.. .|.|...
T Consensus 45 d~rKG~l~l~~---~ed~l~hf~W~~R~-~~~~Edd 76 (411)
T 2kr0_A 45 DKRKGLVYIQQ---TDDSLIHFCWKDRT-SGNVEDD 76 (411)
T ss_dssp CCSCEEEEEEE---CTTSCEEEEEEESS-SCCEEEE
T ss_pred cCCCcEEEEEe---CCCCcEEEEEecCC-CCCcccc
Confidence 34789999875 24556889999864 4555543
Done!