RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031993
(149 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 35.6 bits (83), Expect = 0.001
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDP 88
+YE + Y++ LP + +KV + GV+ IS +R + + +
Sbjct: 2 VYETDDAYVVEADLPGFKKEDIKVE----VEDGVLTISG---------EREEEEEEEENY 48
Query: 89 SPEHCPPGEFIREIPLPTRIPDDAKLEA-YGDETGTGLEIMVPK 131
G F R LP + D K++A + G L I +PK
Sbjct: 49 LRRERSYGSFSRSFRLPEDV-DPDKIKASLEN--GV-LTITLPK 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 33.3 bits (77), Expect = 0.007
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 29/106 (27%)
Query: 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMPYIQRNDRTFKLTDP 88
Y+ + ++ + LP + +KV + V+ IS K +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVE----VEDNVLTIS----------------GKREEE 40
Query: 89 SPEHCPPGEFIREIPLPTRI-PDD--AKLEAYGDETGTGLEIMVPK 131
GEF R LP + P+ A LE G LEI +PK
Sbjct: 41 EERERSYGEFERSFELPEDVDPEKSKASLEN-----GV-LEITLPK 80
>gnl|CDD|238187 cd00307, RuBisCO_small_like, Ribulose bisphosphate
carboxylase/oxygenase (Rubisco), small subunit and
related proteins. Rubisco is a bifunctional enzyme
catalyzes the initial steps of two opposing metabolic
pathways: photosynthetic carbon fixation and the
competing process of photorespiration. Rubisco Form I,
present in plants and green algae, is composed of eight
large and eight small subunits. The nearly identical
small subunits are encoded by a family of nuclear
genes. After translation, the small subunits are
translocated across the chloroplast membrane, where an
N-terminal signal peptide is cleaved off. While the
large subunits contain the catalytic activities, it has
been shown that the small subunits are important for
catalysis by enhancing the catalytic rate through
inducing conformational changes in the large subunits.
This superfamily also contains specific proteins from
cyanobacteria. CcmM plays a role in a CO2 concentrating
mechanism, which cyanobacteria need to to overcome the
low specificity of their Rubisco and fusions to Rubisco
activase, a type of chaperone, which promotes and
maintains the catalytic activity of Rubisco. CcmM
contains an N-terminal carbonic anhydrase fused to four
copies of the Rubisco-small subunit domain.
Length = 84
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 34 QGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACM 73
QGY I L AD +R + + W + G ++ S +
Sbjct: 14 QGY--KIGLEHADARRFRTSSW--QSCGPIEGRSEAQVLA 49
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain.
This is a family of glycine cleavage T-proteins, part of
the glycine cleavage multienzyme complex (GCV) found in
bacteria and the mitochondria of eukaryotes. GCV
catalyzes the catabolism of glycine in eukaryotes. The
T-protein is an aminomethyl transferase.
Length = 212
Score = 26.9 bits (60), Expect = 4.6
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 3 PVEPPWLHEFTGVMRNVYGPVTAAKTIYEDEQGYLIII 40
+ L F+ GPV ++T Y E GY I +
Sbjct: 116 DLSLEALPFFSFAEIEGGGPVRVSRTGYTGEDGYEIYV 153
>gnl|CDD|176410 cd01815, BMSC_UbP_N, Ubiquitin-like domain of BMSC-UbP. BMSC_UbP
(bone marrow stromal cell-derived ubiquitin-like
protein) has an N-terminal ubiquitin-like (UBQ) domain
and a C-terminal ubiquitin-associated (UBA) domain, a
domain architecture similar to those of the UBIN, Chap1,
and ubiquilin proteins. This CD represents the
N-terminal ubiquitin-like domain.
Length = 75
Score = 25.2 bits (55), Expect = 5.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 90 PEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIM 128
P+ P E I I ++ DD L+ YG ++G+ + I+
Sbjct: 35 PDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL 73
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 26.6 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 83 FKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEAY 117
FK D E P EF + P P+ L+ +
Sbjct: 55 FKSKDEEIELVPLEEFYAQAPEDISRPEKTPLDEH 89
>gnl|CDD|236987 PRK11798, PRK11798, ClpXP protease specificity-enhancing factor;
Provisional.
Length = 138
Score = 25.5 bits (57), Expect = 7.9
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 12 FTGVMRNVYGPVTAAKTIY--EDEQG 35
F GV R +Y PV A IY E+ QG
Sbjct: 74 FGGVPRQIYVPVAAVLAIYARENGQG 99
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 26.1 bits (58), Expect = 8.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 20 YGPVTAAKTIYED 32
GPV AA T+YED
Sbjct: 154 NGPVQAAFTVYED 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.437
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,866,374
Number of extensions: 705789
Number of successful extensions: 552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 20
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)