RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031993
(149 letters)
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 32.2 bits (74), Expect = 0.026
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 21/123 (17%)
Query: 11 EFTGVMRNVYGPVTAAKTIYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLST 70
+ R Y V +YE+ +++ L + +++K + I +
Sbjct: 11 RSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQ---NELIIEAERE 67
Query: 71 ACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEA-YGDETGTG-LEIM 128
P ++ + + I LP + DA++ Y + G L I
Sbjct: 68 ITEPGVKYLTQRP------------KYVRKVIRLPYNVAKDAEISGKYEN----GVLTIR 111
Query: 129 VPK 131
+P
Sbjct: 112 IPI 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.10
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 35/89 (39%)
Query: 58 LTHGVVKIS-SLSTACMPYIQRNDRTFKLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEA 116
L+HG ++ + TA + L + +F + +P PT A
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ------LQE---------QFNKILPEPTEGF------A 49
Query: 117 YGDETGTGLEIMVPKHRVGPEEHEVFKFL 145
DE T E+ V KFL
Sbjct: 50 ADDEPTTPAEL-------------VGKFL 65
Score = 26.2 bits (57), Expect = 6.7
Identities = 32/147 (21%), Positives = 43/147 (29%), Gaps = 49/147 (33%)
Query: 12 FTGVMR--NVYGPVTAAKTIYED--EQGY------LIIISLPFADL-KRVKVTWWN-NL- 58
F GV R Y + +I ED E L I +L + V T N +L
Sbjct: 305 FIGV-RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLP 361
Query: 59 THGVVKISSLSTACMPYIQRN-DRTFKLTDPSPE------------HCPPGEFIREIPLP 105
V+IS L N + ++ P P+ P G IP
Sbjct: 362 AGKQVEIS-L---------VNGAKNLVVSGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 106 TRIPDDAKLEAYGDETGTGLEIMVPKH 132
R K L + P H
Sbjct: 411 ERKL---KFSN------RFLPVASPFH 428
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 26.8 bits (59), Expect = 2.9
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 9 LHEFTGVMRNVYGPVTAAKTIYEDEQGYLIIISLPFADLKRVKVT 53
L F P+T D + + LP D K+VK+T
Sbjct: 286 LPNFVEQAEQAPKPIT------IDTHNRQVRLFLPGFDKKQVKLT 324
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 26.2 bits (58), Expect = 3.1
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 28/110 (25%)
Query: 29 IYEDEQGYLIIISLPFADLKRVKVTWWNNLTHGVVKISSLSTACMP-----YIQRNDRTF 83
I E +Q +I LP + + + + N ++I + + M I
Sbjct: 61 IIEGDQHIKVIAWLPGVNKEDIIL----NAVGDTLEIRAKRSPLMITESERIIYSEIPEE 116
Query: 84 KLTDPSPEHCPPGEFIREIPLPTRIPDDAKLEA-YGDETGTG-LEIMVPK 131
E R I LP + + A + + G L +++PK
Sbjct: 117 ------------EEIYRTIKLPATV-KEENASAKFEN----GVLSVILPK 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 113 KLEA----YGDETGTGLEI 127
KL+A Y D++ L I
Sbjct: 24 KLQASLKLYADDSAPALAI 42
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket,
protein-peptide complex, homodimer, transport protein;
1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB:
1zsz_A 1twb_A 1zsz_B
Length = 111
Score = 25.1 bits (55), Expect = 6.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 12 FTGVMRNVYGPVTAAKTIYEDEQG 35
F GV R +Y P+ AA IY E G
Sbjct: 75 FKGVSRELYIPMGAALAIYARENG 98
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB,
RSEA, protein binding; 1.80A {Escherichia coli} SCOP:
b.136.1.1 PDB: 1ox9_A 1ox8_A
Length = 118
Score = 25.1 bits (55), Expect = 7.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 12 FTGVMRNVYGPVTAAKTIYEDEQG 35
F G+ R V P+ A IY E G
Sbjct: 76 FGGIPRQVSVPLAAVLAIYARENG 99
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding
protein, homodimer, transport protein; 1.80A
{Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A
1zsz_C
Length = 129
Score = 24.8 bits (54), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 12 FTGVMRNVYGPVTAAKTIYEDEQG 35
F GV R +Y P+ AA IY E G
Sbjct: 75 FKGVSRELYIPMGAALAIYARENG 98
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 25.6 bits (55), Expect = 8.3
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 46 DLKRVKVTWWNNLTHGVVKISSLSTACMPYIQ 77
L HG VK S C+P++
Sbjct: 479 SPHSGFHEVTCELNHGRVKF-SYHAKCLPHLT 509
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA
binding protein; NMR {Homo sapiens}
Length = 106
Score = 24.7 bits (54), Expect = 9.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 116 AYGDETGTGLEIMVPKHRVG 135
A G G G+++ VP+H VG
Sbjct: 4 ATGSRIGGGIDVPVPRHSVG 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.437
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,442,478
Number of extensions: 139087
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 16
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)