RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031993
         (149 letters)



>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 89

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 97  EFIREIPLPTRIPDDAKLEAYG 118
            FI  +P    +P++ KL+ Y 
Sbjct: 11  SFINGLPRTINLPNELKLDLYK 32


>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB
          {Haemophilus influenzae [TaxId: 727]}
          Length = 106

 Score = 25.0 bits (55), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 12 FTGVMRNVYGPVTAAKTIY--EDEQG 35
          F GV R +Y P+ AA  IY  E+  G
Sbjct: 71 FKGVSRELYIPMGAALAIYARENGDG 96


>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB
          {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 25.0 bits (55), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 12 FTGVMRNVYGPVTAAKTIY--EDEQG 35
          F G+ R V  P+ A   IY  E+  G
Sbjct: 73 FGGIPRQVSVPLAAVLAIYARENGAG 98


>d1kbaa_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
          multicinctus), kappa-bungarotoxin [TaxId: 8616]}
          Length = 66

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 81 RT-FKLTDPSPEHCPPGEFI 99
          RT       +P+ CP G+ I
Sbjct: 1  RTCLISPSSTPQTCPNGQDI 20


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 24.2 bits (52), Expect = 4.8
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 29  IYEDEQGYLIIISLPFADLKRVKVTW-WNNLTHGVVKISSLSTACMPYIQRNDRTFKLTD 87
           I E +Q   +I  LP  + + + +    + L     +   + T     I           
Sbjct: 15  IIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSE-------- 66

Query: 88  PSPEHCPPGEFIREIPLPTRIPDDAKLEAYGDETGTGLEIMVPK 131
                    E  R I LP  + ++     + +     L +++PK
Sbjct: 67  ----IPEEEEIYRTIKLPATVKEENASAKFENGV---LSVILPK 103


>d1lsia_ g.7.1.1 (A:) Long neurotoxin 1 (component LSIII) {Sea
          snake (Laticauda semifasciata) [TaxId: 8631]}
          Length = 66

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 81 RTFKLTDPSPEHCPPGE 97
          R   L     + CP G+
Sbjct: 1  RECYLNPHDTQTCPSGQ 17


>d1mr6a_ g.7.1.1 (A:) Bungarotoxin {Many-banded krait (Bungarus
          multicinctus), gamma-bungarotoxin [TaxId: 8616]}
          Length = 68

 Score = 23.2 bits (50), Expect = 6.4
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 83 FKLTDPSPEHCPPGE 97
             T P+ E CP G+
Sbjct: 7  SFYTCPNSETCPDGK 21


>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 24.6 bits (53), Expect = 7.0
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 56  NNLTHGVVKISSLSTACMPYIQRNDR 81
            N++  V    SLS +C    +    
Sbjct: 440 VNMSTAVCHFRSLSKSCSIVTKTYQG 465


>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit
          fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 92

 Score = 23.4 bits (50), Expect = 8.6
 Identities = 5/15 (33%), Positives = 6/15 (40%)

Query: 81 RTFKLTDPSPEHCPP 95
            +KLT  S     P
Sbjct: 3  NAWKLTKDSGLEGVP 17


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,470
Number of extensions: 27916
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 11
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)