BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031996
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2
SV=1
Length = 246
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/143 (92%), Positives = 137/143 (95%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD TSV+HLFPITKYLGLLATGMTADARTLVQQAR EAAEFRFKYGYEMPVDVL+KWIAD
Sbjct: 61 LDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
KSQVYTQHAYMRPLGV ++ I
Sbjct: 121 KSQVYTQHAYMRPLGVVAMILGI 143
>sp|O48551|PSA6_SOYBN Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2
Length = 246
Score = 272 bits (696), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/136 (94%), Positives = 133/136 (97%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGSGGGY+RHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDS+CVVT KKVPDKL
Sbjct: 1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD+TSVTHLFPITKYLGLLATGMTADARTLVQQAR EAAEFRF YGYEMPVDVLAKWIAD
Sbjct: 61 LDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIAD 120
Query: 121 KSQVYTQHAYMRPLGV 136
KSQVYTQHAYMRPLGV
Sbjct: 121 KSQVYTQHAYMRPLGV 136
>sp|O81147|PSA6B_ARATH Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2
PE=1 SV=1
Length = 246
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 124/136 (91%), Positives = 132/136 (97%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD +SV+HLFP+TKYLGLLATGMTAD+R+LVQQAR EAAEFRF+YGYEMP D+LAKWIAD
Sbjct: 61 LDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIAD 120
Query: 121 KSQVYTQHAYMRPLGV 136
KSQVYTQHAYMRPLGV
Sbjct: 121 KSQVYTQHAYMRPLGV 136
>sp|Q9LSU3|PSA6_ORYSJ Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica
GN=PAA1 PE=2 SV=1
Length = 246
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/136 (91%), Positives = 133/136 (97%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRG+G GYDRHITIFSPEGRL+QVEYAFKAVK+AGVTSIGVRGKDSVCVVTQKKVPDKL
Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LDHTSVTHLFPITKY+GLLATG+TADAR+LV QAR EAAEFRFK+GYEMPVDVLAKWIAD
Sbjct: 61 LDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIAD 120
Query: 121 KSQVYTQHAYMRPLGV 136
K+QVYTQHAYMRPLGV
Sbjct: 121 KAQVYTQHAYMRPLGV 136
>sp|O81146|PSA6A_ARATH Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1
PE=1 SV=2
Length = 246
Score = 265 bits (678), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 123/136 (90%), Positives = 131/136 (96%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGSG GYDRHITIFSPEGRLFQVEYAFKAVK AG+TSIGVRGKDSVCVVTQKKVPDKL
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD +SVTHLFPITKY+GL+ATG+TADAR+LVQQAR +AAEFRF YGYEMPVD+LAKWIAD
Sbjct: 61 LDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIAD 120
Query: 121 KSQVYTQHAYMRPLGV 136
KSQVYTQHAYMRPLGV
Sbjct: 121 KSQVYTQHAYMRPLGV 136
>sp|P60901|PSA6_RAT Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1
SV=1
Length = 246
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 119/143 (83%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
SQVYTQ+A MRPLG + LI I
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGI 143
>sp|P60900|PSA6_HUMAN Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1
Length = 246
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 119/143 (83%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
SQVYTQ+A MRPLG + LI I
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGI 143
>sp|Q2YDE4|PSA6_BOVIN Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1
Length = 246
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 119/143 (83%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
SQVYTQ+A MRPLG + LI I
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGI 143
>sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1
Length = 246
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/143 (68%), Positives = 119/143 (83%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ G+TS+ VRGKD +VTQKKVPDKL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
LD ++VTHLF IT+ +G + TGMTAD+R+ VQ+ARYEAA +++KYGYE+PVD+L K IAD
Sbjct: 61 LDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
SQVYTQ+A MRPLG + LI I
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGI 143
>sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type-6 OS=Drosophila melanogaster
GN=Prosalpha1 PE=2 SV=2
Length = 244
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 107/141 (75%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGRL+QVEYAFKA+ +T++ ++ D V TQKKV +K
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKN 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
+ +VTHLF ITK +G TG AD+R+ VQ+ARYEAA FR+KYGYEMPVDVL + IAD
Sbjct: 61 IVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLI 141
+QVYTQ+A MRPLG + LI
Sbjct: 121 INQVYTQNAEMRPLGCSMVLI 141
>sp|O94517|PSA1_SCHPO Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC646.16 PE=3 SV=1
Length = 244
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 106/136 (77%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
G+DR IT+FSPEGRL+QVEYAFKA AG+TS+GV GK+ CV++QKKVPDKL+D ++V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
H+FPITK +G + TG ADAR V +AR EAAEF +K GY MP DVLAK +A+ +QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 128 HAYMRPLGVGLFLIEI 143
A MRPLGV + L+ +
Sbjct: 126 RAAMRPLGVAMTLVAV 141
>sp|P21243|PSA1_YEAST Proteasome subunit alpha type-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCL1 PE=1 SV=1
Length = 252
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 104/135 (77%)
Query: 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
YDRHITIFSPEGRL+QVEYAFKA + S+ VRGKD V++QKKVPDKLLD T+V++
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 69 LFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH 128
+F I++ +G++ G DAR +A+ EAAEFR+KYGY+MP DVLAK +A+ SQ+YTQ
Sbjct: 72 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 131
Query: 129 AYMRPLGVGLFLIEI 143
AYMRPLGV L + +
Sbjct: 132 AYMRPLGVILTFVSV 146
>sp|Q54XM7|PSA6_DICDI Proteasome subunit alpha type-6 OS=Dictyostelium discoideum
GN=psmA6 PE=3 SV=1
Length = 250
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSR GYD I IFSP+G+L+Q+EYAFKA+K G+TS+G+RGKD V V TQKK+PDKL
Sbjct: 1 MSRSGTAGYDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKL 59
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
+D SVT L+ +T Y+G + TG+ D+++ +A E A F K+GY++P +VLAK +AD
Sbjct: 60 IDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMAD 119
Query: 121 KSQVYTQHAYMRPLGVGLFLIEI 143
+Q+ TQHA RPLGV + LI I
Sbjct: 120 IAQLSTQHASARPLGVAMILIGI 142
>sp|O17586|PSA6_CAEEL Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1
PE=1 SV=1
Length = 246
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 103/141 (73%)
Query: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKL 60
MSRGS G+DRHITIFSPEGR++QVEYAFKA+ + +T++ V+G D+ + QK+VPD L
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL 60
Query: 61 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD 120
+ +VT ++ I++ +G A GM DA+ +++A+ EAA +++K GY+MP ++LAK +AD
Sbjct: 61 IVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMAD 120
Query: 121 KSQVYTQHAYMRPLGVGLFLI 141
+Q YTQ+A MR LG L I
Sbjct: 121 LNQYYTQNAEMRSLGCALLFI 141
>sp|Q9GU37|PSA1_TRYBB Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 266
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 90/131 (68%)
Query: 5 SGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT 64
S G+D++IT+FSPEG L+QVEYAFKAV AG+ ++ +R KD+V V TQ VPDKL+
Sbjct: 2 SRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPE 61
Query: 65 SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQV 124
++T L+ + G+ TG D + LVQ+AR EA+E++++YG M V VLAK D +QV
Sbjct: 62 TITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQV 121
Query: 125 YTQHAYMRPLG 135
TQ A MR +G
Sbjct: 122 RTQQAGMRLMG 132
>sp|A6VIP0|PSA_METM7 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmA PE=3 SV=1
Length = 259
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR ITIFSPEGRL+QVEYA +AV+ G T++G++ KD V + +++ KL+D +S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSS 65
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I ++ +G+ ADAR L+ +AR EA R YG + V+ LAK I D Q Y
Sbjct: 66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY 125
Query: 126 TQHAYMRPLGVGLFL 140
TQH RP G+ L +
Sbjct: 126 TQHGGARPFGLALLI 140
>sp|A4FZT6|PSA_METM5 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmA PE=3 SV=1
Length = 259
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR ITIFSPEGRL+QVEYA +AV+ G T++G++ KD V + +++ KL+D +S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSS 65
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I ++ +G+ ADAR L+ +AR EA R YG + V+ LAK I D Q Y
Sbjct: 66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY 125
Query: 126 TQHAYMRPLGVGLFL 140
TQH RP G+ L +
Sbjct: 126 TQHGGARPFGLALLI 140
>sp|Q6M0L9|PSA_METMP Proteasome subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmA PE=3 SV=1
Length = 259
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR ITIFSPEGRL+QVEYA +AV+ G T++G++ KD V + +++ KL+D +S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSS 65
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I ++ +G+ ADAR L+ +AR EA R YG + V+ LAK I D Q Y
Sbjct: 66 IEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAY 125
Query: 126 TQHAYMRPLGVGLFL 140
TQH RP G+ L +
Sbjct: 126 TQHGGARPFGLALLI 140
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
YDR IT+FSP+GRLFQVEYA +AVK G T++G++ ++ V + K+V KL++ S+
Sbjct: 9 AYDRAITVFSPDGRLFQVEYAREAVKR-GTTALGIKVEEGVVLGVDKRVTSKLIEPESIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
++ I ++G G+ ADAR LV++AR EA +R+ YG + VDVL K I D QVYTQ
Sbjct: 68 KVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQ 127
Query: 128 HAYMRPLGVGLFL 140
H +RP G L +
Sbjct: 128 HGGVRPFGTALLI 140
>sp|O26782|PSA_METTH Proteasome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmA PE=3 SV=1
Length = 248
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQVEYA +AVK G TS+GV+ K+ + +V K+ KL++ S+
Sbjct: 7 AGYDRAITVFSPDGRLFQVEYAREAVKR-GTTSLGVKSKEGIVLVVDKRPTSKLVEPKSI 65
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I +++G +G+ ADAR ++++AR EA R Y + V+ LAK I D Q+YT
Sbjct: 66 EKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYT 125
Query: 127 QHAYMRPLGVGLFL 140
QH +RP G L +
Sbjct: 126 QHGGVRPFGTALII 139
>sp|A9A846|PSA_METM6 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmA PE=3 SV=1
Length = 259
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR ITIFSPEGRL+QVEYA +AV+ G T++G++ D V + +++ KL+D +S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCNDGVVLAVDRRITSKLIDVSS 65
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I ++ +G+ ADAR L+ +AR EA R YG + V+ LAK I D Q Y
Sbjct: 66 IEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY 125
Query: 126 TQHAYMRPLGVGLFL 140
TQH RP G+ L +
Sbjct: 126 TQHGGARPFGLALLI 140
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
YDR IT+FSPEGRL+QVEYA +AV+ G T+IG+ KD V + +++ KL+ S+
Sbjct: 7 SAYDRAITVFSPEGRLYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSI 65
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ +G+ ADAR L+ +AR EA +R YG E+ +++LAK I D Q YT
Sbjct: 66 EKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYT 125
Query: 127 QHAYMRPLGVGLFL 140
QH +RP GV L +
Sbjct: 126 QHGGVRPFGVSLLI 139
>sp|A6URN9|PSA_METVS Proteasome subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1
Length = 259
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR ITIFSPEGRL+QVEYA +AV+ G T++G++ KD V + +++ KL+D +S
Sbjct: 7 ASGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSS 65
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I ++ +G+ ADAR L+ +AR EA R YG + V+ LAK I D Q Y
Sbjct: 66 IEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAY 125
Query: 126 TQHAYMRPLGVGLFL 140
T H RP G+ L +
Sbjct: 126 THHGGARPFGLALLI 140
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV+YA +AVK G T++GV+ KD V + +K+V KL++ S
Sbjct: 8 AGYDRAITVFSPDGRLFQVQYAREAVKR-GATAVGVKCKDGVVLAVEKRVTSKLIEPESY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ ++G+ ADAR LV +AR EA +R YG +P+ VL K I D Q++T
Sbjct: 67 EKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNEKPEL 149
>sp|Q8TPX5|PSA_METAC Proteasome subunit alpha OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmA PE=3 SV=1
Length = 247
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRLFQVEYA +AVK G T++G++ D V ++ K++ +L++ S+
Sbjct: 6 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIE 64
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I +++G +G+ ADAR+LV +AR EA R Y + V+V++K I D Q YTQ
Sbjct: 65 KIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQ 124
Query: 128 HAYMRPLGVGLFL 140
+ +RP G L +
Sbjct: 125 YGGVRPYGTALLI 137
>sp|Q469M6|PSA_METBF Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmA PE=3 SV=1
Length = 249
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRLFQVEYA +AVK G T++G++ D V ++ K++ +L++ S+
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIE 66
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G +G+ ADAR+LV +AR EA R Y + V+V++K I D Q YTQ
Sbjct: 67 KIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQ 126
Query: 128 HAYMRPLGVGLFL 140
+ +RP G L +
Sbjct: 127 YGGVRPYGTALLI 139
>sp|Q8PTU1|PSA_METMA Proteasome subunit alpha OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmA PE=3 SV=1
Length = 249
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRLFQVEYA +AVK G T++G++ D V ++ K++ +L++ S+
Sbjct: 8 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIE 66
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G +G+ ADAR+LV +AR EA R Y + V+V++K I D Q YTQ
Sbjct: 67 KIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQ 126
Query: 128 HAYMRPLGVGLFL 140
+ +RP G L +
Sbjct: 127 YGGVRPYGTALLI 139
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ KD V + +K++ KL++ +S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKDGVVLAVEKRITSKLIEPSSY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ +G+ ADAR LV +AR EA +R YG +P+ VL K I D Q +T
Sbjct: 67 EKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNEKPEL 149
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ KD V + +K++ KL++ +S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKDGVVLAVEKRITSKLIEPSSY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ +G+ ADAR LV +AR EA +R YG +P+ VL K I D Q +T
Sbjct: 67 EKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNEKPEL 149
>sp|B8GEZ3|PSA_METPE Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1
Length = 241
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRL+QVEYA +AVK G T++G++ D + ++ K+V KLL+ +S+
Sbjct: 8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIE 66
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G+ ++G+ DAR+LV +AR E+ R Y ++ V++L+K + D Q YTQ
Sbjct: 67 KIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQ 126
Query: 128 HAYMRPLGVGLFLIEIA 144
RP G L + I+
Sbjct: 127 FGGARPYGTALLIAGIS 143
>sp|A5UJS2|PSA_METS3 Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1
Length = 250
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTS 65
GYDR IT+FSP+GRLFQVEYA +AVK G TSIG++ + + + K+ L++ TS
Sbjct: 6 NAGYDRAITVFSPDGRLFQVEYAREAVKR-GTTSIGIKCSEGIVLAVDKRTTSNLVEATS 64
Query: 66 VTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY 125
+ +F I +++G +G+ ADAR LV++AR EA + Y + VD L+K + D Q+Y
Sbjct: 65 IEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMY 124
Query: 126 TQHAYMRPLGVGLFL 140
TQ+ +RP G L +
Sbjct: 125 TQNGGVRPFGSALII 139
>sp|Q59565|PSA_METTE Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3
SV=1
Length = 247
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRLFQVEYA +AVK G T++G++ D V ++ K++ +L++ S+
Sbjct: 6 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIE 64
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G +G+ ADAR LV +AR EA R Y + V+V++K I D Q YTQ
Sbjct: 65 KIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQ 124
Query: 128 HAYMRPLGVGLFL 140
+ +RP G L +
Sbjct: 125 YGGVRPYGTALLI 137
>sp|A7I9C7|PSA_METB6 Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8)
GN=psmA PE=3 SV=1
Length = 240
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRL+QVEYA +AVK G T++G++ D V ++ K+V KLL+ +S+
Sbjct: 8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKAHDGVVLIVDKRVSSKLLESSSIE 66
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I +++G+ ++G+ DAR LV +AR E R Y + V+ LAK + D Q TQ
Sbjct: 67 KIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQ 126
Query: 128 HAYMRPLGVGLFL 140
+ +RP G L +
Sbjct: 127 YGGIRPYGTALLI 139
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ K+ V + +K++ KL++ +S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKEGVVLAVEKRITSKLIEPSSY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ +G+ ADAR LV +AR EA +R YG +P+ VL K I D Q +T
Sbjct: 67 EKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNDKPEL 149
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ KD V + +K++ +L++ S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCKDGVVLAVEKRITSRLIEPESY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ ++G+ ADAR LV +AR EA R YG P+ V+ K I D Q++T
Sbjct: 67 EKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNDKPEL 149
>sp|Q8U0L6|PSA_PYRFU Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmA PE=3 SV=1
Length = 260
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ + V + +K++ +L++ S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCGEGVVLAVEKRITSRLIEPDSY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ ++G+ ADAR LV +AR EA +R YG PV V+ K I D Q++T
Sbjct: 67 EKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + I EL
Sbjct: 127 QYGGVRPFGAALLMAGINDRPEL 149
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRLFQVEYA +AVK G T+IG++ K+ V ++ K+V KLL+ ++
Sbjct: 7 GYDRAITVFSPDGRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEADTIE 65
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
++ I +++ +G+ ADAR L+ +AR EA R Y + V LAK I D Q YTQ
Sbjct: 66 KIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQ 125
Query: 128 HAYMRPLGVGLFL 140
+ +RP GV L +
Sbjct: 126 YGGVRPFGVSLLI 138
>sp|A3CW55|PSA_METMJ Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1
Length = 240
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR IT+FSP+GRL+QVEYA +AVK G T++G++ + V ++ K+V +LL+ S+
Sbjct: 8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIE 66
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G+ ++G+ DAR+LV +AR E+ R Y + V++LAK + D Q YTQ
Sbjct: 67 KIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQ 126
Query: 128 HAYMRPLGVGLFL 140
RP G L +
Sbjct: 127 FGGARPYGTALLI 139
>sp|Q9UXC6|PSA_SULSO Proteasome subunit alpha OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=psmA PE=3 SV=1
Length = 241
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 89/141 (63%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K SV + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSSVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ K V + +K++ +L++ +S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKWKGGVVLAVEKRITSRLIEPSSY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ +G+ ADAR LV +AR EA +R YG +P+ VL K I D Q +T
Sbjct: 67 EKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNEKPEL 149
>sp|O59219|PSA_PYRHO Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmA PE=3 SV=1
Length = 260
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSV 66
GYDR IT+FSP+GRLFQV YA +AVK G T++GV+ + V + +K++ +L++ S
Sbjct: 8 AGYDRAITVFSPDGRLFQVNYAREAVKR-GATAVGVKCNEGVVLAVEKRITSRLIEPESY 66
Query: 67 THLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126
+F I ++ ++G+ ADAR LV +AR EA R YG P+ V+ K I D Q++T
Sbjct: 67 EKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHT 126
Query: 127 QHAYMRPLGVGLFLIEIAIPSEL 149
Q+ +RP G L + + EL
Sbjct: 127 QYGGVRPFGAALLMAGVNEKPEL 149
>sp|C3NEC6|PSA_SULIY Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C3NHC6|PSA_SULIN Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C3MVG1|PSA_SULIM Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C3MQ43|PSA_SULIL Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C4KHD9|PSA_SULIK Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|C3N5R0|PSA_SULIA Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27)
GN=psmA PE=3 SV=1
Length = 241
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T+IG++ K V + ++K+ LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F I ++G G+ +D R L+ AR A + R Y + +D L K +AD Q+YTQ
Sbjct: 68 KVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL--IEIAIP 146
H +RP GV L + I+ ++P
Sbjct: 128 HGGVRPFGVALVIAGIDKSVP 148
>sp|A4YCU9|PSA_METS5 Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmA PE=3 SV=1
Length = 240
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T++GV+ K++V ++ +KK +LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTTLGVKTKNAVVILGEKKKASQLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F + ++G G+ +D R L+ AR + + R Y + +D L K I+D Q+YTQ
Sbjct: 68 KVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL 140
H +RP GV L +
Sbjct: 128 HGGVRPFGVALIV 140
>sp|Q975G5|PSA_SULTO Proteasome subunit alpha OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=psmA PE=3 SV=2
Length = 242
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
GYDR ITIFSP+G L+QV+YAF+AVK G T++GV+ K V ++ +K+ +LLD S+
Sbjct: 9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTTLGVKTKAGVVLIGEKRKATQLLDVDSIE 67
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+F + ++G G+ +D R L+ AR +A + R Y + +D L K ++D Q+YTQ
Sbjct: 68 KVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQ 127
Query: 128 HAYMRPLGVGLFL 140
H +RP GV L +
Sbjct: 128 HGGVRPFGVALII 140
>sp|Q6L0W3|PSA_PICTO Proteasome subunit alpha OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=psmA
PE=3 SV=1
Length = 234
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT 67
YDR IT+FSP+GRLFQVEYA +AVK G T++G++ KD V ++++KKV +L++ TS+
Sbjct: 7 AYDRAITVFSPDGRLFQVEYAREAVKK-GSTALGIKFKDGVALISEKKVRSRLVEKTSLE 65
Query: 68 HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQ 127
+ I + + +G+ ADAR L+ AR + + YG M ++ L K +AD+ Q YTQ
Sbjct: 66 KIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQ 125
Query: 128 HAYMRPLGVGLFL 140
+ +RP GV +
Sbjct: 126 YGGVRPYGVSIIF 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,852,845
Number of Sequences: 539616
Number of extensions: 2013438
Number of successful extensions: 4625
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 4253
Number of HSP's gapped (non-prelim): 229
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)