Query 031996
Match_columns 149
No_of_seqs 114 out of 1052
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0184 20S proteasome, regula 100.0 3.9E-47 8.4E-52 284.3 14.2 145 1-147 1-145 (254)
2 cd03754 proteasome_alpha_type_ 100.0 3.7E-46 8.1E-51 285.2 18.0 139 8-146 1-139 (215)
3 cd03751 proteasome_alpha_type_ 100.0 4.3E-46 9.4E-51 284.3 17.8 139 7-146 2-140 (212)
4 cd03750 proteasome_alpha_type_ 100.0 1E-45 2.2E-50 284.7 17.7 137 9-146 1-137 (227)
5 cd03755 proteasome_alpha_type_ 100.0 1.5E-45 3.3E-50 280.2 17.8 138 9-147 1-138 (207)
6 cd03752 proteasome_alpha_type_ 100.0 2.6E-45 5.6E-50 280.0 18.0 138 8-146 2-140 (213)
7 PRK03996 proteasome subunit al 100.0 1.1E-44 2.3E-49 281.2 17.9 144 1-146 3-146 (241)
8 cd03749 proteasome_alpha_type_ 100.0 2.6E-44 5.7E-49 274.2 17.5 135 9-146 1-135 (211)
9 PTZ00246 proteasome subunit al 100.0 3E-44 6.6E-49 280.5 18.2 141 1-146 1-142 (253)
10 cd03756 proteasome_alpha_arche 100.0 9E-44 1.9E-48 271.0 17.6 138 8-146 1-138 (211)
11 KOG0178 20S proteasome, regula 100.0 5.4E-44 1.2E-48 265.8 13.4 141 1-146 1-142 (249)
12 KOG0183 20S proteasome, regula 100.0 2.1E-44 4.5E-49 268.5 10.4 139 8-147 3-141 (249)
13 TIGR03633 arc_protsome_A prote 100.0 3.4E-43 7.3E-48 270.0 17.5 138 8-146 2-139 (224)
14 cd01911 proteasome_alpha prote 100.0 4.5E-43 9.7E-48 266.8 16.7 137 9-146 1-137 (209)
15 cd03753 proteasome_alpha_type_ 100.0 1.1E-42 2.5E-47 265.3 17.2 137 9-146 1-142 (213)
16 KOG0176 20S proteasome, regula 100.0 2.1E-43 4.6E-48 260.5 10.2 139 8-147 7-150 (241)
17 KOG0182 20S proteasome, regula 100.0 1E-41 2.2E-46 253.7 14.0 147 1-147 1-147 (246)
18 COG0638 PRE1 20S proteasome, a 100.0 3.4E-40 7.5E-45 255.5 17.1 136 8-145 2-138 (236)
19 KOG0181 20S proteasome, regula 100.0 3.3E-40 7.2E-45 243.0 11.1 139 8-147 5-143 (233)
20 KOG0863 20S proteasome, regula 100.0 3.6E-39 7.7E-44 242.6 12.7 138 7-147 4-141 (264)
21 cd03760 proteasome_beta_type_4 100.0 7.6E-30 1.6E-34 192.5 14.2 110 35-146 1-112 (197)
22 cd03758 proteasome_beta_type_2 100.0 1.7E-29 3.7E-34 190.2 14.6 108 37-146 2-110 (193)
23 cd03759 proteasome_beta_type_3 100.0 2.4E-29 5.2E-34 189.6 14.5 108 36-147 3-111 (195)
24 TIGR03690 20S_bact_beta protea 100.0 3.6E-29 7.8E-34 191.8 14.5 110 36-146 2-112 (219)
25 TIGR03691 20S_bact_alpha prote 100.0 8E-29 1.7E-33 191.1 14.2 112 25-145 17-129 (228)
26 cd03761 proteasome_beta_type_5 100.0 1.6E-28 3.4E-33 184.2 13.8 106 37-146 1-107 (188)
27 TIGR03634 arc_protsome_B prote 100.0 2.3E-28 4.9E-33 182.5 14.1 107 36-146 1-108 (185)
28 cd03757 proteasome_beta_type_1 100.0 1.9E-28 4.2E-33 186.9 13.9 111 32-147 5-116 (212)
29 PF00227 Proteasome: Proteasom 100.0 4.2E-28 9.1E-33 180.9 15.2 115 32-147 1-117 (190)
30 cd03762 proteasome_beta_type_6 100.0 2.7E-27 5.8E-32 177.2 13.7 105 37-146 1-106 (188)
31 PTZ00488 Proteasome subunit be 100.0 2.7E-27 5.9E-32 184.5 14.3 110 31-147 35-147 (247)
32 cd03764 proteasome_beta_archea 99.9 5E-27 1.1E-31 175.8 14.1 106 37-146 1-107 (188)
33 cd03765 proteasome_beta_bacter 99.9 7.5E-27 1.6E-31 180.7 14.4 109 38-146 2-121 (236)
34 cd01906 proteasome_protease_Hs 99.9 1.5E-26 3.3E-31 171.4 14.8 108 37-146 1-109 (182)
35 cd01912 proteasome_beta protea 99.9 1.5E-26 3.2E-31 173.0 13.8 106 37-146 1-107 (189)
36 cd03763 proteasome_beta_type_7 99.9 1.4E-26 3E-31 173.6 13.6 105 37-146 1-106 (189)
37 KOG0177 20S proteasome, regula 99.9 2.6E-23 5.5E-28 152.8 10.6 109 37-147 2-111 (200)
38 KOG0179 20S proteasome, regula 99.9 9.5E-23 2.1E-27 152.0 10.5 112 33-148 26-138 (235)
39 KOG0174 20S proteasome, regula 99.9 4.7E-22 1E-26 146.9 10.1 108 35-147 18-126 (224)
40 cd01901 Ntn_hydrolase The Ntn 99.9 1.4E-20 3E-25 135.1 14.7 106 37-145 1-107 (164)
41 KOG0185 20S proteasome, regula 99.9 1.9E-21 4.2E-26 147.1 9.8 131 13-148 13-153 (256)
42 KOG0180 20S proteasome, regula 99.9 5.8E-21 1.3E-25 138.8 10.9 109 36-148 8-117 (204)
43 cd01913 protease_HslV Protease 99.8 1.6E-19 3.4E-24 133.5 11.0 98 37-144 1-101 (171)
44 PRK05456 ATP-dependent proteas 99.8 3.6E-19 7.8E-24 132.0 11.8 99 36-143 1-101 (172)
45 KOG0175 20S proteasome, regula 99.8 2.5E-19 5.4E-24 137.3 9.9 109 35-147 70-179 (285)
46 TIGR03692 ATP_dep_HslV ATP-dep 99.8 6.6E-19 1.4E-23 130.2 10.2 98 37-144 1-101 (171)
47 KOG0173 20S proteasome, regula 99.7 1.4E-17 3E-22 127.3 8.7 112 30-147 32-144 (271)
48 PF10584 Proteasome_A_N: Prote 99.6 1.9E-15 4.1E-20 75.3 2.2 23 9-31 1-23 (23)
49 COG5405 HslV ATP-dependent pro 98.7 6.3E-08 1.4E-12 70.4 6.0 98 35-141 3-102 (178)
50 COG3484 Predicted proteasome-t 93.5 0.84 1.8E-05 34.9 8.5 106 37-143 2-119 (255)
51 PF09894 DUF2121: Uncharacteri 84.4 1.7 3.8E-05 32.8 4.0 19 37-55 2-20 (194)
52 smart00481 POLIIIAc DNA polyme 72.7 4.8 0.0001 24.4 2.9 32 14-46 6-38 (67)
53 COG4079 Uncharacterized protei 63.8 8.4 0.00018 30.4 3.1 85 37-123 2-160 (293)
54 COG0279 GmhA Phosphoheptose is 62.1 12 0.00026 27.8 3.5 37 15-51 115-151 (176)
55 PF04539 Sigma70_r3: Sigma-70 56.1 30 0.00065 21.4 4.3 32 91-122 3-34 (78)
56 PF02811 PHP: PHP domain; Int 50.2 17 0.00037 25.6 2.7 31 14-45 7-38 (175)
57 PF06057 VirJ: Bacterial virul 45.8 35 0.00075 25.9 3.8 34 108-145 44-77 (192)
58 COG4728 Uncharacterized protei 41.8 27 0.00058 23.9 2.4 30 68-97 9-38 (124)
59 PRK11508 sulfur transfer prote 40.8 1.1E+02 0.0023 21.0 5.3 36 83-122 39-74 (109)
60 PF01726 LexA_DNA_bind: LexA D 40.3 55 0.0012 20.0 3.5 22 98-119 15-36 (65)
61 COG4831 Roadblock/LC7 domain [ 39.7 14 0.0003 25.0 0.7 11 13-23 17-27 (109)
62 COG4537 ComGC Competence prote 38.3 67 0.0014 21.9 3.8 28 87-114 49-77 (107)
63 PRK07328 histidinol-phosphatas 38.0 37 0.0008 26.5 3.1 36 9-45 4-40 (269)
64 TIGR01856 hisJ_fam histidinol 37.8 35 0.00076 26.4 2.9 31 14-45 7-37 (253)
65 PF08289 Flu_M1_C: Influenza M 35.7 1.3E+02 0.0028 19.8 5.3 48 83-130 41-88 (95)
66 PRK00912 ribonuclease P protei 35.7 44 0.00095 25.5 3.1 35 9-45 4-38 (237)
67 PF01380 SIS: SIS domain SIS d 34.5 62 0.0013 21.5 3.5 33 13-45 57-89 (131)
68 PRK10886 DnaA initiator-associ 32.4 69 0.0015 24.1 3.6 35 13-47 113-147 (196)
69 PRK06361 hypothetical protein; 32.3 53 0.0011 24.4 3.0 31 14-46 3-33 (212)
70 COG1387 HIS2 Histidinol phosph 31.9 54 0.0012 25.3 3.0 28 14-43 9-36 (237)
71 PF07676 PD40: WD40-like Beta 31.8 23 0.0005 18.7 0.7 12 12-23 12-23 (39)
72 cd05781 DNA_polB_B3_exo DEDDy 30.7 56 0.0012 24.2 2.9 58 39-96 28-86 (188)
73 PF01242 PTPS: 6-pyruvoyl tetr 30.4 90 0.0019 21.2 3.7 46 81-126 43-98 (123)
74 PF05636 HIGH_NTase1: HIGH Nuc 30.3 18 0.00038 30.3 0.1 34 13-48 7-42 (388)
75 TIGR03342 dsrC_tusE_dsvC sulfu 28.8 1.9E+02 0.0041 19.8 4.9 36 83-122 38-73 (108)
76 COG0282 ackA Acetate kinase [E 28.5 95 0.0021 26.2 4.0 106 29-146 213-332 (396)
77 TIGR00441 gmhA phosphoheptose 28.2 96 0.0021 22.0 3.7 33 13-45 83-115 (154)
78 PRK09248 putative hydrolase; V 28.2 62 0.0013 24.8 2.8 37 9-46 5-42 (246)
79 PHA03324 nuclear egress membra 27.7 73 0.0016 24.8 3.0 40 105-144 49-88 (274)
80 PRK07105 pyridoxamine kinase; 27.1 56 0.0012 25.5 2.5 27 66-92 4-30 (284)
81 PF08140 Cuticle_1: Crustacean 26.5 97 0.0021 17.4 2.6 29 15-51 5-33 (40)
82 COG0299 PurN Folate-dependent 25.6 72 0.0016 24.3 2.6 44 45-88 80-123 (200)
83 PF07661 MORN_2: MORN repeat v 25.5 29 0.00063 15.8 0.4 13 13-25 5-17 (22)
84 cd05006 SIS_GmhA Phosphoheptos 25.3 2.6E+02 0.0056 20.0 6.1 31 15-45 107-137 (177)
85 PF14515 HOASN: Haem-oxygenase 25.2 1.6E+02 0.0035 19.2 3.8 42 80-124 47-88 (93)
86 PF13066 DUF3929: Protein of u 25.0 67 0.0015 19.3 1.9 21 30-51 40-60 (65)
87 PRK00414 gmhA phosphoheptose i 24.4 1.1E+02 0.0024 22.6 3.5 34 13-46 115-148 (192)
88 COG2920 DsrC Dissimilatory sul 23.9 2.1E+02 0.0045 19.6 4.3 35 84-122 42-76 (111)
89 TIGR03172 probable selenium-de 23.2 1.3E+02 0.0028 23.4 3.7 75 46-120 99-177 (232)
90 PF15286 Bcl-2_3: Apoptosis re 22.9 2E+02 0.0042 19.9 4.1 48 78-126 22-69 (126)
91 PRK13936 phosphoheptose isomer 22.5 1.3E+02 0.0027 22.4 3.5 35 13-47 115-149 (197)
92 cd04795 SIS SIS domain. SIS (S 22.2 1.4E+02 0.0031 18.1 3.3 31 13-43 51-81 (87)
93 KOG3219 Transcription initiati 22.0 3.6E+02 0.0079 20.5 5.8 49 71-122 129-179 (195)
94 KOG0330 ATP-dependent RNA heli 21.2 1.1E+02 0.0023 26.2 3.0 33 110-145 137-169 (476)
95 PRK08392 hypothetical protein; 21.0 1E+02 0.0022 23.1 2.8 31 14-46 7-37 (215)
96 PRK13938 phosphoheptose isomer 20.2 1.6E+02 0.0035 22.0 3.7 34 13-46 117-150 (196)
No 1
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-47 Score=284.30 Aligned_cols=145 Identities=38% Similarity=0.596 Sum_probs=141.4
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
||+ +|++||++.++||||||+||+|||+|||++ ++|+|||||||||||++||..+|+|..++.+.||+.|++||+|++
T Consensus 1 MSs-IGtGyDls~s~fSpdGrvfQveYA~KAven-~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~av 78 (254)
T KOG0184|consen 1 MSS-IGTGYDLSASTFSPDGRVFQVEYAQKAVEN-SGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAV 78 (254)
T ss_pred CCc-ccccccccceeeCCCCceehHHHHHHHHhc-CCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEE
Confidence 886 999999999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+|+.+|++.+++++|.++..|+.+|+.|+|.+.++..++.++|.||.++..||||++.|+++||.++
T Consensus 79 aGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g 145 (254)
T KOG0184|consen 79 AGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEG 145 (254)
T ss_pred eccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999654
No 2
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-46 Score=285.16 Aligned_cols=139 Identities=73% Similarity=1.121 Sum_probs=133.3
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||+++|+||||||++|+|||+||+++.|+|+|||+++||||||+|++.++.++..++.+||++|++|++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 59999999999999999999999998778899999999999999999998777766788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.+.+++|.++.+|+++++++|+++.||+++++++|.|+++++.|||+|++||||||++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~ 139 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEE 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999964
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-46 Score=284.33 Aligned_cols=139 Identities=40% Similarity=0.627 Sum_probs=134.1
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
.+||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.++..++.+||++|++|++|++||+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~-G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVEN-SGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhc-CCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 5899999999999999999999999987 999999999999999999999888777778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.+.+++|.+++.|+++++++|+|+.+++++++++|.|+++++.|||+|++||+|||++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~ 140 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999964
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-45 Score=284.70 Aligned_cols=137 Identities=39% Similarity=0.635 Sum_probs=133.2
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||+++|+||||||++|||||++|+++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~-G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSS-GAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 89999999999999999999999987 99999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
.+++++|.++++|++++|++|+++.+++++++++|.|+++++.|||+|++||+|||++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~ 137 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG 137 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999899999999999999964
No 5
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-45 Score=280.17 Aligned_cols=138 Identities=40% Similarity=0.640 Sum_probs=132.8
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++..+.++.+++.+||++|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~-G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRK-GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999999987 99999999999999999999887787777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
.+.+++|.++++|+++++++|+++.+++++++++|+|+++++.|||+|++||+|||+++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~ 138 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDG 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999753
No 6
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-45 Score=279.99 Aligned_cols=138 Identities=37% Similarity=0.606 Sum_probs=132.2
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCcccccc-ccccceeeecCcEEEEEeccHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~-~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
+||+++|+||||||++|+|||+||+++ |+|+|||+++||||||+|++.+++++.. ++.+||++|++|++|++||+.+|
T Consensus 2 ~yd~~~~~fsp~Grl~Qveya~~a~~~-G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 2 RYDSRTTIFSPEGRLYQVEYAMEAISH-AGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CcCCCCceECCCCEEhHHHhHHHHHhc-CCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 699999999999999999999999997 9999999999999999999999766654 48899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.+++++|.++++|+++++++|+++.+++.++..+|.||++++.|||+|++||+|||++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~ 140 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKH 140 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999963
No 7
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.1e-44 Score=281.18 Aligned_cols=144 Identities=44% Similarity=0.714 Sum_probs=138.7
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
|+ +++++||.++|+||||||++|+|||.+|+++ |+|+|||+++||||||+|++.++.++.+++.+||++|++|++|++
T Consensus 3 ~~-~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~ 80 (241)
T PRK03996 3 MQ-PQQMGYDRAITIFSPDGRLYQVEYAREAVKR-GTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAAS 80 (241)
T ss_pred CC-ccccccCCCCceECCCCeEhHHHHHHHHHHh-CCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEE
Confidence 56 6999999999999999999999999999987 999999999999999999999988887788999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
||+.+|++.+++++|.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||||||++
T Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~ 146 (241)
T PRK03996 81 AGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG 146 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999899999999999999964
No 8
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-44 Score=274.19 Aligned_cols=135 Identities=38% Similarity=0.647 Sum_probs=128.8
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.+. ++.+||++|++|++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~-G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQ-GSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhc-CCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999999999987 99999999999999999999877653 3668999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
.+.+++|.++++|+++++++|+++.+++++++++|.||++.+.|||+|++||+|||++
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~ 135 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES 135 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC
Confidence 9999999999999999999999999999999999999998899999999999999964
No 9
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3e-44 Score=280.50 Aligned_cols=141 Identities=38% Similarity=0.600 Sum_probs=133.8
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCcccccc-ccccceeeecCcEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLL 79 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~-~~~~KI~~I~~~i~~~ 79 (149)
|++ +||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|++.++.++.. ++.+||++|++|++|+
T Consensus 1 ~~~----~yd~~~~~fsp~Grl~QvEYA~~av~~-g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~ 75 (253)
T PTZ00246 1 MSR----RYDSRTTTFSPEGRLYQVEYALEAINN-ASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCA 75 (253)
T ss_pred CCC----ccCCCCceECCCCEEhHHHHHHHHHHh-CCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEE
Confidence 665 899999999999999999999999997 9999999999999999999999766655 4689999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++|+.+|++.+.+.+|.++..|++.++++++++.+++.++..+|.|+++++.|||+|++||+|||++
T Consensus 76 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~ 142 (253)
T PTZ00246 76 VAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDEN 142 (253)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999953
No 10
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-44 Score=271.05 Aligned_cols=138 Identities=43% Similarity=0.745 Sum_probs=133.2
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||.++|+||||||++|+|||.||+++ |+|+|||+++||||||+|++.++.++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~-G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 599999999999999999999999987 9999999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.+.++++.+++.|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+.
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~ 138 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999998899999999999999964
No 11
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-44 Score=265.77 Aligned_cols=141 Identities=40% Similarity=0.659 Sum_probs=135.8
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCcccccc-ccccceeeecCcEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLL 79 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~-~~~~KI~~I~~~i~~~ 79 (149)
||| +||...|+||||||++|||||++++.++| |+|||-++||||||++++.+++|.+. ...+||++|+||++|+
T Consensus 1 msr----~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~ 75 (249)
T KOG0178|consen 1 MSR----RYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACA 75 (249)
T ss_pred CCc----CcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEE
Confidence 888 89999999999999999999999999865 99999999999999999999999864 5789999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++|+++|+..+++++|..++.|.++||++||++.|+..++++-|.|||+++.||||||+|.+|||..
T Consensus 76 vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~ 142 (249)
T KOG0178|consen 76 VAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDR 142 (249)
T ss_pred EecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 12
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-44 Score=268.49 Aligned_cols=139 Identities=37% Similarity=0.579 Sum_probs=136.2
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||+.+|+|||||||+|+|||++|+++ |+|+||++++|+|||+.+++...+|++.+...||-.+++|++|+|||+.+|+
T Consensus 3 rydraltvFSPDGhL~QVEYAqEAvrk-GstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 3 RYDRALTVFSPDGHLFQVEYAQEAVRK-GSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred ccccceEEECCCCCEEeeHhHHHHHhc-CceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 499999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+.+++++|-+|++|+++.+.|++++.++++|+.+-|.||++.+.||||+++||+|||+++
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g 141 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDG 141 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999875
No 13
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.4e-43 Score=270.04 Aligned_cols=138 Identities=45% Similarity=0.755 Sum_probs=133.0
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||.++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.++..++.+||++|+++++|++||+.+|+
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~-G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 499999999999999999999999987 9999999999999999999999888777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.+.++++.++..|+++++++++++.+++++++++|.|+++++.|||+|++||+|||+.
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~ 139 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDG 139 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999998889999999999999953
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4.5e-43 Score=266.76 Aligned_cols=137 Identities=53% Similarity=0.847 Sum_probs=132.1
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||.++|+||||||++|+|||++++.+ |+|+|||+++||||||+|++.+..++..++.+||++|+++++|++||+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~-G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKN-GSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 89999999999999999999999986 99999999999999999999997677668899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
.+.++++.++.+|+++++++|+++.+|+++++++|.|+++++.|||+|++||+|||++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~ 137 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEE 137 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999975
No 15
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-42 Score=265.30 Aligned_cols=137 Identities=38% Similarity=0.681 Sum_probs=129.8
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||.++|+||||||++|+|||++++++ |+|+|||+++||||||+|++.++.+...++.+||++|++|++|++||+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhc-CCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999999987 99999999999999999999987777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC-----CccccceEEEEEEEeCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~-----~~rP~~v~~liaG~D~~ 146 (149)
.+.+++|.+++.|+++++++|+++.+++++++++|+|++.. +.|||+|++||+|||++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~ 142 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN 142 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC
Confidence 99999999999999999999999999999999999998643 46999999999999964
No 16
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=260.50 Aligned_cols=139 Identities=38% Similarity=0.650 Sum_probs=131.1
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
.||+.+++||||||+||||||.+|++ .|+|.|||++++|||||++||.+++|..++..+||++|++||+|++||+.+|+
T Consensus 7 eydrgVNTfSpEGRlfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDa 85 (241)
T KOG0176|consen 7 EYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADA 85 (241)
T ss_pred HhcccccccCCCceeeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccch
Confidence 59999999999999999999999997 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----ccccceEEEEEEEeCCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~liaG~D~~~ 147 (149)
+++++++|.++++|.+.|+++|+++.+.+.++++-..|..... .|||||++|+||+|+++
T Consensus 86 rTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g 150 (241)
T KOG0176|consen 86 RTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG 150 (241)
T ss_pred HHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC
Confidence 9999999999999999999999999999999999887754322 48999999999999654
No 17
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=253.72 Aligned_cols=147 Identities=71% Similarity=1.072 Sum_probs=144.1
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
||||+.++||+++|+||||||++|||||.||+++.|-|+||+|+||++|+++.|+.+.+|++++....+|+|+++|+|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 89999999999999999999999999999999998999999999999999999999999999988999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+|+.+|++..++++|.++.+++++||.+||++.||++++++.|.|||+..+||+||.+++.|+|++.
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~ 147 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEER 147 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 18
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=255.46 Aligned_cols=136 Identities=46% Similarity=0.778 Sum_probs=129.5
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCcccc-ccccccceeeecCcEEEEEeccHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLL-DHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~-~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
+||+.+++|||||+++|+|||.+++++.|+|+|||+++||||||+|+|.++.++ ..++.+||++|+||++|++||+.+|
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aD 81 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAAD 81 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHh
Confidence 699999999999999999999999998779999999999999999999996654 4566999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
++.+++++|.+++.|++.++++|+|+.+++.+++++|.|+++ .|||+|++||||+|+
T Consensus 82 a~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~ 138 (236)
T COG0638 82 AQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC
Confidence 999999999999999999999999999999999999999885 899999999999998
No 19
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=243.03 Aligned_cols=139 Identities=37% Similarity=0.553 Sum_probs=135.6
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+|..++|+|||+|++-|+|||+.|+.+ |.+.|||+..||||||++|+..+.|.+.....|+++|.+||+|.+||+.+|.
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~-G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVN-GQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhC-CCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 799999999999999999999999987 9999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+.+++..|+.++.|...|+++||+..|...++..+|+|||+++.|||||+++|||||+.+
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~ 143 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGG 143 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCc
Confidence 999999999999999999999999999999999999999999999999999999999864
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=242.64 Aligned_cols=138 Identities=37% Similarity=0.585 Sum_probs=132.2
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
+.||.++|+|||+||++|||||++|+++ |++.||+|.++..||++-++..+.|.. ..+|||+||+|++++++|+++|
T Consensus 4 nqyd~d~t~wsPqGrl~QvEya~Eavkq-GsatVGLks~thaVLvAl~r~~seLss--~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 4 NQYDNDVTTWSPQGRLHQVEYAMEAVKQ-GSATVGLKSRTHAVLVALKRAQSELSS--HQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred ccccCceeEECCcceehHHHHHHHHHhc-ccceEeecccceEEEeeeccchhHHHH--hhheeEecccccceEEeccCcc
Confidence 5799999999999999999999999998 999999999999999999998877654 5679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
++.+++++|.+|..++..|++++|+..|...+.+.+|..|++.+.|||||.++++|||+.+
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G 141 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG 141 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999865
No 21
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=7.6e-30 Score=192.52 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=102.8
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAA-EFRFKYGYEMPVD 112 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~~~~~~~~ 112 (149)
+|+|+|||+++||||||+|++.+ +.++.+++.+|||+|++|++|+++|+.+|++.+++++|.+++ .|+++++++|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 48899999999999999999999 788888899999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 113 VLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 113 ~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
.+++++++++ |+++++.|||+|++||||||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~ 112 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNE 112 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCC
Confidence 9999999986 5777789999999999999964
No 22
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=1.7e-29 Score=190.21 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=101.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++|++||+.+|++.+++++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999997 6778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.|+++ + |||++++||+|||++
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~ 110 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKV 110 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCC
Confidence 9999999988764 3 899999999999964
No 23
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.4e-29 Score=189.62 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=100.0
Q ss_pred CceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
|+|+|||+++||||||+|++.++.++. .++.+|||+|++|++|++||+.+|++.+++++|.+++.|+++++++|+++.+
T Consensus 3 G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 82 (195)
T cd03759 3 GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTF 82 (195)
T ss_pred CceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 899999999999999999999877765 4578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+++++++++ ++ +.|||+|++||||||+++
T Consensus 83 a~~l~~~ly--~~--r~~P~~v~~ii~G~D~~~ 111 (195)
T cd03759 83 SSLISSLLY--EK--RFGPYFVEPVVAGLDPDG 111 (195)
T ss_pred HHHHHHHHH--Hh--cCCCceEEEEEEEEcCCC
Confidence 999999985 44 468999999999999654
No 24
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=99.96 E-value=3.6e-29 Score=191.85 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=104.3
Q ss_pred CceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
|+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+++++|.+++.|+++++++|+++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 81 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGK 81 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 8899999999999999999999 588888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++|++++|.++. ...|||+|++||||||++
T Consensus 82 a~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~ 112 (219)
T TIGR03690 82 ANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLD 112 (219)
T ss_pred HHHHHHHHHhhhh-hccCCceEEEEEEEECCC
Confidence 9999999998774 468999999999999953
No 25
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.96 E-value=8e-29 Score=191.06 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=103.3
Q ss_pred hhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHH
Q 031996 25 VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 104 (149)
Q Consensus 25 ~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 104 (149)
-|||++|+++ |+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.++++++.+++.|+++
T Consensus 17 ~EYA~kav~~-g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~ 88 (228)
T TIGR03691 17 AELARKGIAR-GRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYS 88 (228)
T ss_pred HHHHHHHHHc-CCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5999999987 999999999999999999972 35789999999999999999999999999999999999999
Q ss_pred hC-CCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 105 YG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 105 ~~-~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
++ .+++++.+|+++++.++.++ +++.|||+|++||+|||+
T Consensus 89 ~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~ 129 (228)
T TIGR03691 89 YDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGE 129 (228)
T ss_pred cCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcC
Confidence 98 78999999998888887666 567899999999999985
No 26
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.6e-28 Score=184.23 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=99.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCc-cccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++|++||+.+|++.+++++|.+++.|+++++++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999995 677778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.+++ .||+|++||||||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~ 107 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKT 107 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCC
Confidence 999999997753 489999999999964
No 27
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.96 E-value=2.3e-28 Score=182.50 Aligned_cols=107 Identities=23% Similarity=0.424 Sum_probs=101.8
Q ss_pred CceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
|+|+|||+++||||||+|++.+ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++++++|.+ +.|||+|++||||||++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~ 108 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEE 108 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCC
Confidence 99999999865 68999999999999965
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.9e-28 Score=186.93 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=101.2
Q ss_pred hhccCceEEEEEcCCeEEEEEeccCCccc-cccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031996 32 VKAAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (149)
Q Consensus 32 v~~~G~t~igik~kdgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 110 (149)
+++ |+|+|||+++||||||+|++.+..+ +.+++.+||++|++|++|++||+.+|++.+.+++|.++++|+++++++|+
T Consensus 5 ~~~-G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 5 TDN-GGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred cCC-CccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 444 9999999999999999999999655 44678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 111 VDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 111 ~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
++.++++++++++. + +.|||+|++||||||+++
T Consensus 84 ~~~la~~ls~~ly~--~--R~~P~~~~~iiaG~D~~~ 116 (212)
T cd03757 84 TEAIAQLLSTILYS--R--RFFPYYVFNILAGIDEEG 116 (212)
T ss_pred HHHHHHHHHHHHHh--h--cCCCeEEEEEEEEEcCCC
Confidence 99999999999963 3 357999999999999654
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.96 E-value=4.2e-28 Score=180.88 Aligned_cols=115 Identities=35% Similarity=0.541 Sum_probs=106.8
Q ss_pred hhccCceEEEEEcCCeEEEEEeccCC--ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 031996 32 VKAAGVTSIGVRGKDSVCVVTQKKVP--DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (149)
Q Consensus 32 v~~~G~t~igik~kdgVvlaad~~~~--~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~ 109 (149)
|++ |+|+|||+++||||||+|++.+ +.+..++..+||++|++|+++++||+.+|++.+.++++.++..|++.+++++
T Consensus 1 v~~-G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VNN-GTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HHT-SBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CCC-CeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 455 9999999999999999999998 4544555579999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 110 PVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+++.+++.++.+++.++++++.|||++++|++|||+++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~ 117 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDG 117 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeecccc
Confidence 99999999999999999998999999999999999765
No 30
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=2.7e-27 Score=177.23 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=98.3
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999998 4677778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.++ |||+|++||||||++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~ 106 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQ 106 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCC
Confidence 99999998653 689999999999963
No 31
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=99.95 E-value=2.7e-27 Score=184.46 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=99.9
Q ss_pred HhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 031996 31 AVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEM 109 (149)
Q Consensus 31 av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~ 109 (149)
.+.+ |+|+|||+++||||||+|++.+ +.++.+++.+||++|++|+++++||+.+|++.+++++|.+++.|+++++++|
T Consensus 35 ~~~~-G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFAH-GTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccCC-CceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3455 9999999999999999999998 6888888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCccccc--eEEEEEEEeCCC
Q 031996 110 PVDVLAKWIADKSQVYTQHAYMRPLG--VGLFLIEIAIPS 147 (149)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~--v~~liaG~D~~~ 147 (149)
+++.+|++|++++|.+ |||+ +++||||||+++
T Consensus 114 sv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~g 147 (247)
T PTZ00488 114 SVAAASKILANIVWNY------KGMGLSMGTMICGWDKKG 147 (247)
T ss_pred CHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCC
Confidence 9999999999999854 4555 558999999653
No 32
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=5e-27 Score=175.76 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=100.2
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++++++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999998 5777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.+ +.|||+|++||||||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~ 107 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEE 107 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCC
Confidence 9999999864 57999999999999963
No 33
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=7.5e-27 Score=180.74 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=98.9
Q ss_pred eEEEEEcCCeEEEEEeccCCccccccccccceeeec----CcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCC-CCCHH
Q 031996 38 TSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPIT----KYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPVD 112 (149)
Q Consensus 38 t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~~~~~ 112 (149)
=+|||+++||||||+|++.++.++..++.+||++|+ +|++|+.||+.+|++.+++++|.++++|++++|+ +||++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 489999999999999999988877666889999998 9999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHH-HhhcCC-----ccccceEEEEEEEeCC
Q 031996 113 VLAKWIADKSQV-YTQHAY-----MRPLGVGLFLIEIAIP 146 (149)
Q Consensus 113 ~la~~l~~~~~~-~t~~~~-----~rP~~v~~liaG~D~~ 146 (149)
.+|++++++++. +++..+ .|||+|++||+|||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~ 121 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKG 121 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECC
Confidence 999999998664 455543 4899999999999953
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.95 E-value=1.5e-26 Score=171.38 Aligned_cols=108 Identities=39% Similarity=0.655 Sum_probs=101.2
Q ss_pred ceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.++.+.. .++.+|||+|+++++++++|+.+|++.+.+++++++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999855544 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|++++. .|||++++|++|||++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~ 109 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEE 109 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCC
Confidence 9999999998874 8999999999999963
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=1.5e-26 Score=172.96 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=99.0
Q ss_pred ceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+..+.. .++.+|||+|++++++++||+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999965554 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.+++ |||++++||||||++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~ 107 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKG 107 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCC
Confidence 999999986653 899999999999974
No 36
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=1.4e-26 Score=173.64 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=97.9
Q ss_pred ceEEEEEcCCeEEEEEeccCCc-cccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPD-KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.++ .++..++.+|||+|+++++|+++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999985 566677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.+|.|. .||+|++||||||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~ 106 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYT 106 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCC
Confidence 99999998653 399999999999965
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-23 Score=152.84 Aligned_cols=109 Identities=13% Similarity=0.238 Sum_probs=102.3
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
.+++||++.|+|++|+|+... +-++.+++.+|+++|++++.|+++|..+|+.++.+++.+++++|+.++|.+++|..+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 489999999999999999987 6666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+++++.++++.+ ..+||.|++|+||+|++.
T Consensus 82 hFtR~~La~~LR--sr~~yqV~~LvaGYd~~~ 111 (200)
T KOG0177|consen 82 HFTRRELAESLR--SRTPYQVNILVAGYDPEE 111 (200)
T ss_pred HHHHHHHHHHHh--cCCCceEEEEEeccCCCC
Confidence 999999999875 578999999999999764
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.5e-23 Score=152.03 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=103.6
Q ss_pred hccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 031996 33 KAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 111 (149)
Q Consensus 33 ~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~ 111 (149)
..+|+|++||.+.|+.|+|+|+|.+ +.-+..++.+|||+++|+++++.+|.++|+..+.+.++...+.|++.++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 3448899999999999999999998 455667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCCC
Q 031996 112 DVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPSE 148 (149)
Q Consensus 112 ~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~~ 148 (149)
..+|+.|+..+| ..++.||++..+|+|+|++++
T Consensus 106 ~s~A~lls~~LY----~kRFFPYYv~~ilaGiDeeGK 138 (235)
T KOG0179|consen 106 HSAAQLLSTILY----SKRFFPYYVFNILAGIDEEGK 138 (235)
T ss_pred HHHHHHHHHHHh----hcccccceeeeeeecccccCc
Confidence 999999999996 347899999999999999774
No 39
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.7e-22 Score=146.88 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=101.5
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 113 (149)
+|||++|+++++||||++|.|.+ +.++.++-.+|+.+|.|+|+||.||.++|.|.+++.++..+..|..+++.++.+..
T Consensus 18 tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~ 97 (224)
T KOG0174|consen 18 TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHT 97 (224)
T ss_pred cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 69999999999999999999998 78888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 114 LAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
.|+.++++.|+|.. -+...+|+||||++.
T Consensus 98 aA~l~r~~~Y~~re-----~L~AgliVAGwD~~~ 126 (224)
T KOG0174|consen 98 AASLFREICYNYRE-----MLSAGLIVAGWDEKE 126 (224)
T ss_pred HHHHHHHHHHhCHH-----hhhcceEEeeccccc
Confidence 99999999987643 488999999999864
No 40
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.86 E-value=1.4e-20 Score=135.09 Aligned_cols=106 Identities=32% Similarity=0.444 Sum_probs=99.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+||++++||||||+|++.+..+.. .....||+.++++++++++|..+|++.+.++++.++..|+++++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 48999999999999999999855544 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
+.+++.++.+++ .||+++++||+|+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~ 107 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE 107 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC
Confidence 999999998876 799999999999995
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-21 Score=147.15 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=112.3
Q ss_pred cceeCCCCcchhhhhH--------HHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEecc
Q 031996 13 ITIFSPEGRLFQVEYA--------FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGM 83 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya--------~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~ 83 (149)
.++|.|.|.. ++-| +.+.- +||++||+|++||||||+|+..+ +++...++.+||++++||+++++||.
T Consensus 13 ~~~f~~~~~~--m~~a~~~~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGd 89 (256)
T KOG0185|consen 13 PGTFYPSGSL--MENAGDYPIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGD 89 (256)
T ss_pred CCcCcCccch--hhhccCCCcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCcc
Confidence 5677787544 3333 23333 59999999999999999999999 88888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCCC
Q 031996 84 TADARTLVQQARYEAAEFR-FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPSE 148 (149)
Q Consensus 84 ~~D~~~l~~~~r~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~~ 148 (149)
.+|.|.|.+.+.....+.. +..|..+.|+.++++|...+| .+++.+.|++.+++|+|+|+++|
T Consensus 90 isD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY--~rRsKmnPlwntlvVgGv~~~g~ 153 (256)
T KOG0185|consen 90 ISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLY--ARRSKMNPLWNTLVVGGVDNTGE 153 (256)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHH--HhhhccCchhhheeEeeecCCCC
Confidence 9999999999988777744 556799999999999999996 56778999999999999998765
No 42
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.8e-21 Score=138.83 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=101.1
Q ss_pred CceEEEEEcCCeEEEEEeccCCcccc-ccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVPDKLL-DHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~~~l~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
|++++|+++||+|.||+|.|.....+ ..++++|||+|.|+++++.+|+..|.+++.++++...++|+++.++.|.|+.+
T Consensus 8 Gg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~ 87 (204)
T KOG0180|consen 8 GGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETF 87 (204)
T ss_pred CceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHH
Confidence 88999999999999999999984443 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEeCCCC
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPSE 148 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~~ 148 (149)
++.++.++|+ .++.||-+.++|||+|++++
T Consensus 88 s~mvS~~lYe----kRfgpYf~~PvVAGl~~~~k 117 (204)
T KOG0180|consen 88 SSMVSSLLYE----KRFGPYFTEPVVAGLDDDNK 117 (204)
T ss_pred HHHHHHHHHH----hhcCCcccceeEeccCCCCC
Confidence 9999999974 27889999999999998765
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.82 E-value=1.6e-19 Score=133.51 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=81.8
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecC-cEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
+|+|||+++||||||+|+|.+ +.++.+++.+||++|++ |++|++||..+|+++|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999998 77888899999999999 999999999999999999999999999998774 44
Q ss_pred HHHHHHHHHHHhhcCCccccc-eEEEEEEEe
Q 031996 115 AKWIADKSQVYTQHAYMRPLG-VGLFLIEIA 144 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~-v~~liaG~D 144 (149)
++.+..++. .+.+|+. +.+|+++||
T Consensus 76 a~l~~~l~~-----~~~~~~l~a~~iv~~~~ 101 (171)
T cd01913 76 VELAKDWRT-----DRYLRRLEAMLIVADKE 101 (171)
T ss_pred HHHHHHHHh-----ccCcCceEEEEEEeCCC
Confidence 554443321 1445565 777887665
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.81 E-value=3.6e-19 Score=131.97 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred CceEEEEEcCCeEEEEEeccCC-ccccccccccceeee-cCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 113 (149)
|+|++||+++||||||+|+|.+ +.++.+++.+||++| +++++|++||..+|++.|.++++.++++|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 6899999999999999999998 778888899999999 9999999999999999999999999999982 22 466
Q ss_pred HHHHHHHHHHHHhhcCCccccceEEEEEEE
Q 031996 114 LAKWIADKSQVYTQHAYMRPLGVGLFLIEI 143 (149)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~liaG~ 143 (149)
+++....+. .....+|+.+++|++++
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv~d~ 101 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIVADK 101 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEEEcC
Confidence 665543332 12234688899999644
No 45
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-19 Score=137.26 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=101.5
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 113 (149)
+|||++|+|++.|||+|+|.|++ +.++.....+||..|+++++-+.+|-++|++.+-+.+.++|.+|++++++.|+|..
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsa 149 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSA 149 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHH
Confidence 49999999999999999999999 78888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 114 LAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
.++.++++++.|. ++ -+.+..+|+|||+.+
T Consensus 150 ASKllsN~~y~Yk---Gm-GLsmGtMi~G~Dk~G 179 (285)
T KOG0175|consen 150 ASKLLSNMVYQYK---GM-GLSMGTMIAGWDKKG 179 (285)
T ss_pred HHHHHHHHHhhcc---Cc-chhheeeEeeccCCC
Confidence 9999999998764 33 477889999999865
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.79 E-value=6.6e-19 Score=130.18 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=79.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeee-cCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
+|++||+++||||||+|+|.+ +.++.+++.+||++| ++|++|++||..+|+++|.++++.++++|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 699999999999999999998 788888999999999 599999999999999999999999999988743 3555
Q ss_pred HHHHHHHHHHHhhcCCcc-ccceEEEEEEEe
Q 031996 115 AKWIADKSQVYTQHAYMR-PLGVGLFLIEIA 144 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~r-P~~v~~liaG~D 144 (149)
++.++++ ..+ .++ .+.+.+|++|||
T Consensus 76 a~l~~~~----~~~-~~~~~l~a~~iv~~~~ 101 (171)
T TIGR03692 76 VELAKDW----RTD-RYLRRLEAMLIVADKE 101 (171)
T ss_pred HHHHHHH----hhc-ccccccEEEEEEEcCC
Confidence 6655542 111 333 344888887765
No 47
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.4e-17 Score=127.35 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=102.9
Q ss_pred HHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031996 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 108 (149)
Q Consensus 30 ~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 108 (149)
++.+ +|||++|+.+||||||++|+|++ +.++..++.+||+.|.++|+|+.+|-++|...+.+-+..+..+|+++.++.
T Consensus 32 ~~tk-TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 32 KATK-TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred cccc-cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 4454 69999999999999999999999 788888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 109 MPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 109 ~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
++|-...+.+.+.++.|.- -.++.+||+|+|..+
T Consensus 111 ~rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD~TG 144 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRYQG-----HIGAALILGGVDPTG 144 (271)
T ss_pred CceeeHHHHHHHHHHHhcC-----cccceeEEccccCCC
Confidence 9999999999999987643 489999999999875
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.56 E-value=1.9e-15 Score=75.28 Aligned_cols=23 Identities=83% Similarity=1.328 Sum_probs=22.2
Q ss_pred CCcccceeCCCCcchhhhhHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKA 31 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~a 31 (149)
||.++|+||||||++|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.3e-08 Score=70.37 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=72.4
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecC-cEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITK-YLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVD 112 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 112 (149)
.+||++++|-++-|++|+|.+.+ +..+.+.+..|+.+|.+ +++.+|+|.++|+.++.+.+..+++.|.-. +.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------HH
Confidence 37999999999999999999998 77776777666666655 899999999999999999999999887422 11
Q ss_pred HHHHHHHHHHHHHhhcCCccccceEEEEE
Q 031996 113 VLAKWIADKSQVYTQHAYMRPLGVGLFLI 141 (149)
Q Consensus 113 ~la~~l~~~~~~~t~~~~~rP~~v~~lia 141 (149)
..+..+++-.+ .-..+|-+..-+|++
T Consensus 77 raavelaKdwr---~Dk~lr~LEAmllVa 102 (178)
T COG5405 77 RAAVELAKDWR---TDKYLRKLEAMLLVA 102 (178)
T ss_pred HHHHHHHHhhh---hhhHHHHHhhheeEe
Confidence 23333333332 223456677777776
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.84 Score=34.92 Aligned_cols=106 Identities=8% Similarity=-0.025 Sum_probs=66.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCccccccccccceeee---cCc-EEEEEeccHHHHHHHHHHHHHHHHH--HHHHhCCCCC
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPI---TKY-LGLLATGMTADARTLVQQARYEAAE--FRFKYGYEMP 110 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I---~~~-i~~~~sG~~~D~~~l~~~~r~~~~~--~~~~~~~~~~ 110 (149)
+=|+|++-..|.|+++|.|.+...=.....+|.|.- .+. ++++.+|.-+=.|.+.+.+.+..+. .+.-. .-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cchh
Confidence 458999999999999999987322111234444422 233 4566799999999888888666541 22212 2345
Q ss_pred HHHHHHHHHHHHHHHhhcCC------ccccceEEEEEEE
Q 031996 111 VDVLAKWIADKSQVYTQHAY------MRPLGVGLFLIEI 143 (149)
Q Consensus 111 ~~~la~~l~~~~~~~t~~~~------~rP~~v~~liaG~ 143 (149)
+-..+..++....+-.-+.. ---|.|++|++|-
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQ 119 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQ 119 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcce
Confidence 66666777766655422211 1258899999984
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=84.38 E-value=1.7 Score=32.78 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=17.4
Q ss_pred ceEEEEEcCCeEEEEEecc
Q 031996 37 VTSIGVRGKDSVCVVTQKK 55 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~ 55 (149)
+-+||.-+++|.|+|.|+|
T Consensus 2 SLII~y~GknGaViaGDkR 20 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKR 20 (194)
T ss_pred eEEEEEecCCCcEEeccce
Confidence 4689999999999999997
No 52
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=72.73 E-value=4.8 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.3
Q ss_pred ceeCC-CCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 14 TIFSP-EGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 14 t~fsp-~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
|.||+ +|...--++...|.++ |-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~-g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKEL-GLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHc-CCCEEEEeeCC
Confidence 56888 9999999999999886 99999987665
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.79 E-value=8.4 Score=30.37 Aligned_cols=85 Identities=6% Similarity=-0.004 Sum_probs=56.0
Q ss_pred ceEEEEEcCCeEEEEEeccCC-----------------------------------ccccccccccceeeecCcEEEEEe
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-----------------------------------DKLLDHTSVTHLFPITKYLGLLAT 81 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-----------------------------------~~l~~~~~~~KI~~I~~~i~~~~s 81 (149)
+.+|+--++||.|+|.|+|.. -++...++-+|+.++++.++++=-
T Consensus 2 tLviay~gknGaviaGDrR~i~frgdee~re~lEekLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV 81 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREITFRGDEEDREKLEEKLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEV 81 (293)
T ss_pred eEEEEEecCCCcEEeccceEEEEecChhHHHHHHHHhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEe
Confidence 468899999999999999731 111223456788899888887643
Q ss_pred ccH--------------------------------HH-------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 82 GMT--------------------------------AD-------ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 82 G~~--------------------------------~D-------~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
+.. ++ +..+.+.+..++. +.+....++.+.+++.+..++
T Consensus 82 ~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~Ke~anefl--k~~l~~k~~lqd~~dal~elf 159 (293)
T COG4079 82 SSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTKEVANEFL--KDNLTKKSKLQDAVDALMELF 159 (293)
T ss_pred ecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHH
Confidence 322 12 2334444433332 355777889999999998887
Q ss_pred H
Q 031996 123 Q 123 (149)
Q Consensus 123 ~ 123 (149)
-
T Consensus 160 e 160 (293)
T COG4079 160 E 160 (293)
T ss_pred H
Confidence 4
No 54
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=62.09 E-value=12 Score=27.85 Aligned_cols=37 Identities=32% Similarity=0.327 Sum_probs=29.2
Q ss_pred eeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEE
Q 031996 15 IFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVV 51 (149)
Q Consensus 15 ~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvla 51 (149)
-+||.|.=.-|=-|.++.+..|-++||+.++||=-|+
T Consensus 115 gISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 115 GISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 4788887777777766666669999999999997775
No 55
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=56.12 E-value=30 Score=21.37 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 91 VQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 91 ~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
..++++-...++.+.|+.++.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 45566667778889999999999998875443
No 56
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=50.24 E-value=17 Score=25.55 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.4
Q ss_pred ceeC-CCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 14 TIFS-PEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 14 t~fs-p~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
|.|| ++|...--||...|.++ |-+.|||+=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~-Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEK-GLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHT-TESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHc-CCCEEEEcCC
Confidence 4578 79999989999999986 9899998644
No 57
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=45.84 E-value=35 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
.-+|+.++..++.+++.|.++++.+. ++++||.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~----vvLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKR----VVLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCce----EEEEeecC
Confidence 44789999999999999988776654 37778753
No 58
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.81 E-value=27 Score=23.89 Aligned_cols=30 Identities=30% Similarity=0.332 Sum_probs=26.5
Q ss_pred ceeeecCcEEEEEeccHHHHHHHHHHHHHH
Q 031996 68 HLFPITKYLGLLATGMTADARTLVQQARYE 97 (149)
Q Consensus 68 KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~ 97 (149)
-+++|-+..++.+-|..+|...+.++++..
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~ 38 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERL 38 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHh
Confidence 467889999999999999999999998865
No 59
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=40.76 E-value=1.1e+02 Score=21.04 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 83 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 83 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
++.|--.+++++|. |..+++..++++.|++.+...+
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 56777778888875 5566899999999999887644
No 60
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=40.26 E-value=55 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH
Q 031996 98 AAEFRFKYGYEMPVDVLAKWIA 119 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~la~~l~ 119 (149)
+..|...+|.+|++..++..+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3456667899999999988764
No 61
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=39.74 E-value=14 Score=24.96 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=8.8
Q ss_pred cceeCCCCcch
Q 031996 13 ITIFSPEGRLF 23 (149)
Q Consensus 13 ~t~fsp~G~~~ 23 (149)
...||||||+.
T Consensus 17 AGefs~DGkLv 27 (109)
T COG4831 17 AGEFSPDGKLV 27 (109)
T ss_pred eceeCCCCceE
Confidence 35699999984
No 62
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=38.28 E-value=67 Score=21.86 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Q 031996 87 ARTLVQQARYEAAEFRFKYGY-EMPVDVL 114 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~-~~~~~~l 114 (149)
+..+++.+..+++.|++.+++ +++...|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456888899999999999999 6776555
No 63
>PRK07328 histidinol-phosphatase; Provisional
Probab=37.99 E-value=37 Score=26.48 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.5
Q ss_pred CCccc-ceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 9 YDRHI-TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 9 yd~~~-t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+|.++ |.||++|.-.--||+.+|+++ |-+.+|+.-.
T Consensus 4 ~D~H~HT~~s~~~~~~~ee~v~~A~~~-Gl~~i~~TdH 40 (269)
T PRK07328 4 VDYHMHTPLCGHAVGTPEEYVQAARRA-GLKEIGFTDH 40 (269)
T ss_pred eeeccCCCCCCCCCCCHHHHHHHHHHC-CCCEEEEecC
Confidence 44444 478899888788999999986 9999999843
No 64
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=37.83 E-value=35 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=26.8
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
|.||++|+-.--||+..|+++ |-+.+||.-.
T Consensus 7 t~~s~d~~~~~ee~v~~A~~~-Gl~~i~~TdH 37 (253)
T TIGR01856 7 SPFCAHGTDTLEEVVQEAIQL-GFEEICFTEH 37 (253)
T ss_pred cCCCCCCCCCHHHHHHHHHHc-CCCEEEecCC
Confidence 479999988888999999986 9999999743
No 65
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=35.75 E-value=1.3e+02 Score=19.76 Aligned_cols=48 Identities=21% Similarity=0.111 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC
Q 031996 83 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY 130 (149)
Q Consensus 83 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~ 130 (149)
-.+|++.+++.++..++-.+-.--.+-+-+.|+..+-..++.|..+.+
T Consensus 41 q~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 41 QAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 468999999999999998887766677778899999988888865443
No 66
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=35.70 E-value=44 Score=25.54 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
||.++.+ +|+|...--|++.+|++. |-..||+...
T Consensus 4 ~DlHvHt-~~d~~~~~~e~i~~A~~~-Gl~~i~itdH 38 (237)
T PRK00912 4 YDLNVHA-VPDGYDTVLRLISEASHL-GYSGIALSNH 38 (237)
T ss_pred eEeccCC-CCCCcchHHHHHHHHHHC-CCCEEEEecC
Confidence 7888888 588999889999999986 9999999744
No 67
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.53 E-value=62 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.0
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.||..|+-.++-...+..++.|..+|.|++.
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 557888898888877777777668788777654
No 68
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.42 E-value=69 Score=24.10 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.1
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCCe
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDS 47 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdg 47 (149)
+-.+|..|+-..+-.+.+..++.|.++|+|.+.++
T Consensus 113 li~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 113 LLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34588899999898888888888999999998754
No 69
>PRK06361 hypothetical protein; Provisional
Probab=32.26 E-value=53 Score=24.44 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=26.5
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
|.|| +|+..--|++..|.+. |-..|||+-..
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~-Gl~~i~iTDH~ 33 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVL-GYRAIAITDHA 33 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHc-CCCEEEEecCC
Confidence 5688 8999999999999986 99999998554
No 70
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=31.89 E-value=54 Score=25.32 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.7
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEE
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVR 43 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik 43 (149)
|.|| +|...-.|++.+|.+. |-..++++
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~-g~~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIEL-GLEYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHc-CCeEEEEe
Confidence 6788 9999999999999886 98998885
No 71
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.75 E-value=23 Score=18.70 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=7.5
Q ss_pred ccceeCCCCcch
Q 031996 12 HITIFSPEGRLF 23 (149)
Q Consensus 12 ~~t~fsp~G~~~ 23 (149)
..-.|||||+-+
T Consensus 12 ~~p~~SpDGk~i 23 (39)
T PF07676_consen 12 GSPAWSPDGKYI 23 (39)
T ss_dssp EEEEE-TTSSEE
T ss_pred cCEEEecCCCEE
Confidence 355789999753
No 72
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=30.70 E-value=56 Score=24.20 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=38.4
Q ss_pred EEEEEcCCe-EEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHH
Q 031996 39 SIGVRGKDS-VCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARY 96 (149)
Q Consensus 39 ~igik~kdg-Vvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~ 96 (149)
+||....+| +-+.++...+..-+.....+-|-..++.+++++.|..-|...|.++++.
T Consensus 28 ~Is~~~~~g~~~~~~~~~~~E~~lL~~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 28 VISLATSNGDVEFILAEGLDDRKIIREFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred EEEEEeCCCCEEEEEecCCCHHHHHHHHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 444444333 3334433333222223456778889999999999999999999999875
No 73
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=30.45 E-value=90 Score=21.20 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=28.5
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHH--h-------CC-CCCHHHHHHHHHHHHHHHh
Q 031996 81 TGMTADARTLVQQARYEAAEFRFK--Y-------GY-EMPVDVLAKWIADKSQVYT 126 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~--~-------~~-~~~~~~la~~l~~~~~~~t 126 (149)
.|..-|+..+.+.++..+..+..+ + .. .++++.+|.++...+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 466668888877777644443222 1 11 2789999999999998665
No 74
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=30.32 E-value=18 Score=30.32 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=18.8
Q ss_pred cceeCC--CCcchhhhhHHHHhhccCceEEEEEcCCeE
Q 031996 13 ITIFSP--EGRLFQVEYAFKAVKAAGVTSIGVRGKDSV 48 (149)
Q Consensus 13 ~t~fsp--~G~~~Q~eya~~av~~~G~t~igik~kdgV 48 (149)
+.-|+| .|+.+|++-+.+... ...+|+|=..|+|
T Consensus 7 IaEYNPFHnGH~y~i~~~k~~~~--ad~ii~vMSGnFv 42 (388)
T PF05636_consen 7 IAEYNPFHNGHLYQIEQAKKITG--ADVIIAVMSGNFV 42 (388)
T ss_dssp E---TT--HHHHHHHHHHH---T--SSEEEEEE--TTS
T ss_pred EEeECCccHHHHHHHHHHhccCC--CCEEEEEECCCcc
Confidence 567899 599999999988874 2456666554543
No 75
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=28.78 E-value=1.9e+02 Score=19.78 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 83 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 83 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
++.|--.+++++|. |..+++..++++.|++.+...+
T Consensus 38 LT~~Hw~vI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 73 (108)
T TIGR03342 38 LTEAHWEVINFLRD----FYAEYNISPAVRMLVKAMGKKL 73 (108)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 56777778888875 5566899999999999887654
No 76
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=28.55 E-value=95 Score=26.19 Aligned_cols=106 Identities=24% Similarity=0.270 Sum_probs=56.4
Q ss_pred HHHhhccCc---eEEEEEcCCeEEEEEeccCC--c-----ccccc--cccccee-eecCcE-EEEEeccHHHHHHHHHHH
Q 031996 29 FKAVKAAGV---TSIGVRGKDSVCVVTQKKVP--D-----KLLDH--TSVTHLF-PITKYL-GLLATGMTADARTLVQQA 94 (149)
Q Consensus 29 ~~av~~~G~---t~igik~kdgVvlaad~~~~--~-----~l~~~--~~~~KI~-~I~~~i-~~~~sG~~~D~~~l~~~~ 94 (149)
.-|+++ |- |.+|++--+|++|++ |.. . .+... ...+.|. -+++.. +.|.||+.+|.+.+.+..
T Consensus 213 icAikn-GkSvDTSMGfTPLeGl~MGT--RsGdiDP~ii~~l~~~~~~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~ 289 (396)
T COG0282 213 ICAIKN-GKSVDTSMGFTPLEGLMMGT--RSGDIDPGIILYLMEQEGMSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAA 289 (396)
T ss_pred hhhhhC-CeeeccCCCCCcccceeccC--CCCCCChHHHHHHHHhcCCCHHHHHHHHhhhccccccccccchHHHHHHHh
Confidence 455654 54 568888899999986 322 1 11111 1122222 223333 568899999999998766
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 95 RYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 95 r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
..- .. -..-.+..++.+++++-.|.-. +.-.-+-++-||+-|+
T Consensus 290 ~~g-~~------A~lA~~~f~~Ri~kyIg~y~a~--L~glDaiVFTaGIGEN 332 (396)
T COG0282 290 AEG-NE------AKLALDMFVYRIAKYIGSYAAA--LGGLDALVFTAGIGEN 332 (396)
T ss_pred ccC-ch------HHHHHHHHHHHHHHHHHHHHHH--hCCCCEEEEeCccccC
Confidence 433 00 1122344455555555544432 2234455556777554
No 77
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=28.21 E-value=96 Score=21.96 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=26.0
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.+|..|+-..+-.+.+..++.|.++|+|++.
T Consensus 83 ~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 83 LLGISTSGNSKNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 556788888888877777777778899999874
No 78
>PRK09248 putative hydrolase; Validated
Probab=28.17 E-value=62 Score=24.79 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCcccc-eeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 9 YDRHIT-IFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 9 yd~~~t-~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+|.++. .||++|+..--||+..|.+. |-+.|||.-..
T Consensus 5 ~D~H~HT~~s~~~~~~~~e~v~~A~~~-G~~~i~iTdH~ 42 (246)
T PRK09248 5 VDTHTHTIASGHAYSTLHENAAEAKQK-GLKLFAITDHG 42 (246)
T ss_pred eEeCcCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCC
Confidence 566664 58989988888999999986 99999998543
No 79
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=27.74 E-value=73 Score=24.77 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=29.8
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEe
Q 031996 105 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIA 144 (149)
Q Consensus 105 ~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D 144 (149)
.|-++|+|++.+.+++..+--.-+-+..-=|+++|+.|+=
T Consensus 49 dgp~fP~EYILrlM~swa~v~dpylRIQNTGvSVLfqG~F 88 (274)
T PHA03324 49 DGPPIPAEYILEAMNSFLNIGEAWLRIQNTGQAVIVAGCF 88 (274)
T ss_pred cCCCCcHHHHHHHHHhhhcCCCceEEEecCceEEEEEeee
Confidence 6899999999999999886332222223569999999984
No 80
>PRK07105 pyridoxamine kinase; Validated
Probab=27.13 E-value=56 Score=25.50 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.3
Q ss_pred ccceeeecCcEEEEEeccHHHHHHHHH
Q 031996 66 VTHLFPITKYLGLLATGMTADARTLVQ 92 (149)
Q Consensus 66 ~~KI~~I~~~i~~~~sG~~~D~~~l~~ 92 (149)
.+||..++|+.+.|.+|+.+|...+..
T Consensus 4 ~~~vl~~~d~~~~G~aG~~adi~~~~~ 30 (284)
T PRK07105 4 VKRVAAIHDLSGFGRVALTASIPIMSS 30 (284)
T ss_pred CCeEEEEecccccceehHhhHHHHHHH
Confidence 458888999998899999999887654
No 81
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=26.55 E-value=97 Score=17.36 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=20.9
Q ss_pred eeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEE
Q 031996 15 IFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVV 51 (149)
Q Consensus 15 ~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvla 51 (149)
+-.|||+..|+.- |..-|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~~--------~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFPH--------GVANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECCc--------ccceEEEECCceEEee
Confidence 4579999999754 3336677788888875
No 82
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.59 E-value=72 Score=24.33 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=33.5
Q ss_pred CCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 45 KDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 45 kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
-|-||||.-.|.-+.-+......||..|++.+.-+|-|+.+--+
T Consensus 80 ~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~ 123 (200)
T COG0299 80 PDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQ 123 (200)
T ss_pred CCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHH
Confidence 47799999888765544455666999999999999999544433
No 83
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=25.52 E-value=29 Score=15.75 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.8
Q ss_pred cceeCCCCcchhh
Q 031996 13 ITIFSPEGRLFQV 25 (149)
Q Consensus 13 ~t~fsp~G~~~Q~ 25 (149)
...|.|+|++.+.
T Consensus 5 ~~~yy~nG~l~~~ 17 (22)
T PF07661_consen 5 WKFYYENGKLKSE 17 (22)
T ss_pred EEEEeCCCCEEEE
Confidence 4578999998654
No 84
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.34 E-value=2.6e+02 Score=20.01 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=16.8
Q ss_pred eeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 15 IFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 15 ~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
.||..|.-..+--+.+..++.|.++|+|.+.
T Consensus 107 ~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 107 GISTSGNSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555555555444444444446666666654
No 85
>PF14515 HOASN: Haem-oxygenase-associated N-terminal helices; PDB: 3BJD_B.
Probab=25.17 E-value=1.6e+02 Score=19.17 Aligned_cols=42 Identities=12% Similarity=0.330 Sum_probs=30.4
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031996 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQV 124 (149)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 124 (149)
-.|+.+|.+..+.+ +..+|++..+..++.+..-+|+++.+|.
T Consensus 47 ~kgL~GD~~AYA~Y---Q~LL~~L~~~~D~~T~~TRRW~A~~iYr 88 (93)
T PF14515_consen 47 EKGLQGDRQAYAAY---QQLLYELSLSDDVPTAPTRRWMASAIYR 88 (93)
T ss_dssp HHHHTT-HHHHHHH---HHHHHHHHH---GGGHHHHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHH---HHHHHhhhccCCCcchHHHHHHHHHHHH
Confidence 45888999876554 5577888899999999999999998863
No 86
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=24.98 E-value=67 Score=19.28 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=14.0
Q ss_pred HHhhccCceEEEEEcCCeEEEE
Q 031996 30 KAVKAAGVTSIGVRGKDSVCVV 51 (149)
Q Consensus 30 ~av~~~G~t~igik~kdgVvla 51 (149)
.|+.+.| |+|.|.|+|-|-+-
T Consensus 40 taidkqg-tiisiac~divkve 60 (65)
T PF13066_consen 40 TAIDKQG-TIISIACNDIVKVE 60 (65)
T ss_pred EEeccCC-cEEEEEecceeeEE
Confidence 3455534 88888888866543
No 87
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.40 E-value=1.1e+02 Score=22.64 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=27.6
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+-.+|..|+-..+--+.+..++.|..+|+|++..
T Consensus 115 ~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 115 LLGISTSGNSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4558888998888888877777799999998873
No 88
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=23.87 E-value=2.1e+02 Score=19.60 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 84 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 84 ~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
+.+=-.++.++| .|...|+..++++.|.+.+++.+
T Consensus 42 T~eHWevv~fvR----~fy~ef~tsPaiRMLvK~~~~~~ 76 (111)
T COG2920 42 TEEHWEVVRFVR----EFYEEFNTSPAIRMLVKAMAKKL 76 (111)
T ss_pred cHHHHHHHHHHH----HHHHHHCCCchHHHHHHHHHHHh
Confidence 344445666665 46667899999999999888554
No 89
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=23.21 E-value=1.3e+02 Score=23.40 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=51.3
Q ss_pred CeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHHHH-HHH-HHH--HHHHHHHhCCCCCHHHHHHHHHH
Q 031996 46 DSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLV-QQA-RYE--AAEFRFKYGYEMPVDVLAKWIAD 120 (149)
Q Consensus 46 dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~-~~~-r~~--~~~~~~~~~~~~~~~~la~~l~~ 120 (149)
|.|++=||.-..-.+-.+.+.+=+..=..+.++++.|+.+=++.+- +.+ |-+ +..-....+..++++.+++.++.
T Consensus 99 D~vLVEADGAk~~PlKaP~~~EPVIP~~t~~VI~V~gl~alG~pl~~e~vHR~e~~~~i~~~~~g~~it~~~la~li~~ 177 (232)
T TIGR03172 99 DVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGISVVGEKLDTDIVHRWPEFLALTGLAPGDTITLALLARLIAH 177 (232)
T ss_pred CEEEEECCCcCCCcccCCCCCCCccCCCCCEEEEEeCHHHcCCcCChhhccCHHHHHHHHCCCCCCccCHHHHHHHHhC
Confidence 6777778876666666677777777777888999999987777665 233 222 22222335778999999887764
No 90
>PF15286 Bcl-2_3: Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like; PDB: 3BL2_B 3DVU_B 2ABO_A.
Probab=22.89 E-value=2e+02 Score=19.86 Aligned_cols=48 Identities=17% Similarity=0.390 Sum_probs=36.7
Q ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 031996 78 LLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYT 126 (149)
Q Consensus 78 ~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t 126 (149)
+.-||.-.|...+.....+....|+..|+...++ .+.+|..++...++
T Consensus 22 ~v~s~vL~DV~~i~~LTqeF~~~YdSVy~~d~~~-a~~nW~~~l~~L~~ 69 (126)
T PF15286_consen 22 CVDSGVLADVSKIITLTQEFRTHYDSVYGKDYGP-ALSNWKNNLTALFT 69 (126)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHSSTSGG-GGTTHHHHHHHHHH
T ss_pred ccchhHHHhHHHHHHHHHHHHHHHHHHhcccCCh-HHHHHHhhHHHHHH
Confidence 4558899999999998888888899999886664 46666666665554
No 91
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.48 E-value=1.3e+02 Score=22.42 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=24.0
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCCe
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDS 47 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdg 47 (149)
+-.+|..|+-..+--+.+..++.|.++|+|.+.++
T Consensus 115 ~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 115 LLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34577777777666655555556889999988654
No 92
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.19 E-value=1.4e+02 Score=18.10 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=20.6
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEE
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVR 43 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik 43 (149)
+-.+|..|.-..+.-+.+.+++.|..+|+|.
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 4456777766666666666666677777776
No 93
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=21.95 E-value=3.6e+02 Score=20.49 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=31.1
Q ss_pred eecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Q 031996 71 PITKYLGLLATGMTADARTLVQQARYEAAEFRFKY--GYEMPVDVLAKWIADKS 122 (149)
Q Consensus 71 ~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~--~~~~~~~~la~~l~~~~ 122 (149)
.|++++.++++|++ ..|+-.+..+|..-+-.. ..|+.|..+-...+.+.
T Consensus 129 ~v~~nv~Ia~~Gia---KvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~ 179 (195)
T KOG3219|consen 129 SVSENVAIAMAGIA---KVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLK 179 (195)
T ss_pred ccCcceeeeecchh---hHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 37999999999984 333333333333322222 56778888877777664
No 94
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.16 E-value=1.1e+02 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 110 PVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
|.++||..|+..+...++..+.| |.+|++|.|.
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr---~~~lvGG~~m 169 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLR---VAVLVGGMDM 169 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeE---EEEEecCchH
Confidence 67999999999998776655444 8899999874
No 95
>PRK08392 hypothetical protein; Provisional
Probab=21.05 E-value=1e+02 Score=23.12 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=24.4
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
|.|| +|.-.--||...|.++ |-+.+|+.-..
T Consensus 7 T~~s-d~~~~~~e~v~~A~~~-Gl~~i~iTdH~ 37 (215)
T PRK08392 7 TVYS-DGIGSVRDNIAEAERK-GLRLVGISDHI 37 (215)
T ss_pred CCCc-CCcCCHHHHHHHHHHc-CCCEEEEccCC
Confidence 4567 6888888899888886 99999997543
No 96
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.18 E-value=1.6e+02 Score=22.02 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=26.3
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+-.+|..|+-..+-.+.+..++.|.++|+|.+..
T Consensus 117 lI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 117 LFAISTSGNSMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4567888888888777777777798999988754
Done!