Query 031996
Match_columns 149
No_of_seqs 114 out of 1052
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 100.0 6.7E-47 2.3E-51 299.2 17.9 144 1-146 1-144 (288)
2 3h4p_A Proteasome subunit alph 100.0 3.2E-47 1.1E-51 297.9 15.5 145 1-146 4-148 (264)
3 1ryp_A 20S proteasome; multica 100.0 2E-46 6.8E-51 289.8 17.4 139 8-146 2-140 (243)
4 1iru_A 20S proteasome; cell cy 100.0 6.9E-46 2.4E-50 287.2 19.1 144 1-146 3-146 (246)
5 1iru_G 20S proteasome; cell cy 100.0 7.9E-46 2.7E-50 288.3 18.5 141 4-145 2-142 (254)
6 1iru_B 20S proteasome; cell cy 100.0 1.3E-45 4.3E-50 283.6 18.5 139 7-146 3-141 (233)
7 1yar_A Proteasome alpha subuni 100.0 1E-45 3.5E-50 284.1 17.9 139 7-146 6-144 (233)
8 1ryp_G 20S proteasome; multica 100.0 1.4E-45 4.7E-50 285.5 18.1 140 6-146 1-140 (244)
9 1iru_D 20S proteasome; cell cy 100.0 2.8E-45 9.5E-50 284.3 17.5 137 9-146 3-139 (248)
10 1ryp_C 20S proteasome; multica 100.0 6.3E-45 2.1E-49 281.4 18.5 137 8-145 4-141 (244)
11 1ryp_D 20S proteasome; multica 100.0 5.6E-45 1.9E-49 281.3 18.1 138 8-146 1-139 (241)
12 1ryp_F 20S proteasome; multica 100.0 4.1E-45 1.4E-49 280.9 17.0 136 8-146 4-139 (233)
13 1j2p_A Alpha-ring, proteasome 100.0 9.6E-45 3.3E-49 280.9 18.6 137 7-144 6-142 (246)
14 1iru_C 20S proteasome; cell cy 100.0 8.6E-45 3E-49 283.5 18.2 141 1-146 1-142 (261)
15 1ryp_B 20S proteasome; multica 100.0 1.7E-44 6E-49 280.0 18.3 141 1-146 1-142 (250)
16 1iru_F 20S proteasome; cell cy 100.0 3.5E-44 1.2E-48 280.4 18.6 137 7-146 4-140 (263)
17 1iru_E 20S proteasome; cell cy 100.0 8.9E-45 3E-49 280.2 15.0 138 7-145 6-148 (241)
18 1ryp_E 20S proteasome; multica 100.0 1.1E-43 3.9E-48 274.1 14.5 136 10-146 1-142 (242)
19 1q5q_A Proteasome alpha-type s 100.0 1E-33 3.5E-38 220.7 14.3 121 14-144 5-128 (259)
20 3mi0_A Proteasome subunit alph 100.0 4.4E-31 1.5E-35 204.8 16.2 112 24-145 16-129 (248)
21 2jay_A Proteasome; hydrolase; 100.0 4.2E-30 1.5E-34 203.3 12.7 138 7-147 23-168 (291)
22 1q5r_H Proteasome beta-type su 100.0 1E-29 3.5E-34 201.4 13.1 117 28-146 58-175 (294)
23 1ryp_N 20S proteasome; multica 100.0 1.2E-29 4.1E-34 194.7 10.9 114 30-146 3-122 (233)
24 1yar_H Proteasome beta subunit 100.0 5.5E-29 1.9E-33 189.2 14.4 110 30-144 3-113 (217)
25 1iru_M 20S proteasome; cell cy 100.0 8E-29 2.7E-33 187.5 15.0 111 32-147 6-117 (213)
26 1iru_N 20S proteasome; cell cy 100.0 1.3E-29 4.4E-34 192.7 10.5 114 30-146 3-118 (219)
27 3nzj_K Proteasome component PR 100.0 8.1E-29 2.8E-33 195.6 13.8 116 26-146 66-182 (287)
28 1g0u_M Proteasome component PR 100.0 2.5E-29 8.6E-34 196.6 10.1 119 25-146 31-155 (266)
29 3h4p_a Proteasome subunit beta 100.0 1E-28 3.4E-33 188.1 12.2 107 36-146 1-108 (219)
30 1q5q_H Proteasome beta-type su 100.0 2.2E-28 7.7E-33 187.9 13.6 109 37-146 1-110 (235)
31 1j2q_H Proteasome beta subunit 100.0 3.6E-28 1.2E-32 182.5 14.4 106 37-146 1-107 (202)
32 1ryp_H 20S proteasome; multica 100.0 1.6E-28 5.4E-33 185.0 11.8 111 29-146 3-114 (205)
33 1ryp_M 20S proteasome; multica 100.0 6E-28 2.1E-32 184.0 14.8 111 32-147 6-118 (222)
34 1ryp_K 20S proteasome; multica 100.0 7.3E-28 2.5E-32 180.2 14.7 107 37-145 2-109 (198)
35 1iru_H 20S proteasome; cell cy 100.0 6.1E-28 2.1E-32 181.6 14.0 105 37-146 1-106 (205)
36 3nzj_H Proteasome component PU 100.0 8.1E-28 2.8E-32 187.7 14.4 112 29-146 23-135 (261)
37 1ryp_J 20S proteasome; multica 100.0 2.4E-27 8.2E-32 178.3 15.0 106 35-145 7-113 (204)
38 1ryp_L 20S proteasome; multica 100.0 1.3E-27 4.5E-32 180.8 13.5 106 37-146 1-107 (212)
39 1iru_J 20S proteasome; cell cy 100.0 1.2E-27 4.1E-32 180.0 12.9 107 35-145 7-114 (205)
40 3unf_N Proteasome subunit beta 100.0 1.4E-27 4.9E-32 178.8 13.2 105 37-146 1-106 (199)
41 1iru_L 20S proteasome; cell cy 99.9 3.1E-27 1E-31 177.7 13.2 106 37-146 1-107 (204)
42 1iru_K 20S proteasome; cell cy 99.9 7.2E-27 2.5E-31 175.3 14.5 108 37-146 2-110 (201)
43 3unf_H Proteasome subunit beta 99.9 1.3E-26 4.3E-31 178.3 14.4 105 37-146 1-106 (234)
44 1ryp_I 20S proteasome; multica 99.9 1.8E-26 6.3E-31 175.9 14.2 105 37-146 1-106 (222)
45 1iru_I 20S proteasome; cell cy 99.9 7.4E-26 2.5E-30 173.9 14.7 105 37-146 1-106 (234)
46 2z3b_A ATP-dependent protease 99.9 1.1E-22 3.8E-27 150.5 10.9 98 35-141 4-104 (180)
47 1m4y_A ATP-dependent protease 99.9 3.3E-22 1.1E-26 146.6 10.5 96 37-141 1-98 (171)
48 1g3k_A ATP-dependent protease 99.9 1.6E-21 5.6E-26 143.3 10.4 97 37-144 1-99 (174)
49 3jx9_A Putative phosphoheptose 54.7 10 0.00034 27.0 3.1 31 13-44 81-112 (170)
50 2yxo_A Histidinol phosphatase; 52.4 9.7 0.00033 27.9 2.9 30 14-44 8-37 (267)
51 3hvz_A Uncharacterized protein 41.3 16 0.00056 22.4 2.2 36 9-44 4-46 (78)
52 1sau_A Sulfite reductase, desu 32.3 69 0.0024 21.2 4.3 36 83-122 46-81 (115)
53 1yx3_A Hypothetical protein DS 31.5 1E+02 0.0035 20.9 5.1 36 83-122 62-97 (132)
54 1m65_A Hypothetical protein YC 29.2 38 0.0013 24.3 2.9 34 10-44 5-39 (245)
55 3rj2_X ORF158L protein, putati 29.1 14 0.00049 24.9 0.5 15 9-23 55-69 (138)
56 2yva_A DNAA initiator-associat 26.7 68 0.0023 22.1 3.8 34 13-46 113-146 (196)
57 1x92_A APC5045, phosphoheptose 26.7 68 0.0023 22.2 3.8 33 13-45 117-149 (199)
58 1m3s_A Hypothetical protein YC 24.5 83 0.0028 21.4 3.9 33 13-45 83-115 (186)
59 2i2w_A Phosphoheptose isomeras 24.2 71 0.0024 22.5 3.5 33 13-45 135-167 (212)
60 2xbl_A Phosphoheptose isomeras 24.2 81 0.0028 21.6 3.8 33 13-45 120-152 (198)
61 1jeo_A MJ1247, hypothetical pr 23.0 78 0.0027 21.4 3.5 34 13-46 86-119 (180)
62 3sho_A Transcriptional regulat 21.4 1E+02 0.0035 20.9 3.8 34 13-46 91-124 (187)
63 2anu_A Hypothetical protein TM 21.2 65 0.0022 23.5 2.9 33 10-44 23-56 (255)
64 1njh_A Protein YOJF; structura 20.7 46 0.0016 22.2 1.7 9 139-147 96-104 (119)
65 1tk9_A Phosphoheptose isomeras 20.2 75 0.0026 21.6 2.9 32 14-45 115-146 (188)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=6.7e-47 Score=299.25 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=135.4
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
|| .+|++||+++|+||||||+||||||+||+++ |+|+|||+++||||||+|++.++.++..+..+||++|++|++|++
T Consensus 1 m~-~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~-GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~ 78 (288)
T 3nzj_F 1 MT-SIGTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVY 78 (288)
T ss_dssp -----CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEE
T ss_pred CC-CCcCCccCCcccCCCCCchHHHHHHHHHHhc-CCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEe
Confidence 88 4999999999999999999999999999997 999999999999999999999977776667899999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
||+.+|++.+++++|.+++.|+++++++|+++.+|+++++++|.||+++++|||+|++||||||++
T Consensus 79 aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~ 144 (288)
T 3nzj_F 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN 144 (288)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999899999999999999974
No 2
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.2e-47 Score=297.91 Aligned_cols=145 Identities=43% Similarity=0.713 Sum_probs=129.3
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
|...++++||+++|+|||||||||||||++|+++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHHH-SCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 5556788999999999999999999999999986 999999999999999999999988888889999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
||+.+|++.+++++|.+++.|+++++++|+++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~ 148 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKN 148 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETT
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999998899999999999999964
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2e-46 Score=289.76 Aligned_cols=139 Identities=59% Similarity=0.962 Sum_probs=134.3
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||+++|+|||||||+|+|||+||+++.|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||+.+|+
T Consensus 2 ~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 81 (243)
T 1ryp_A 2 GYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDA 81 (243)
T ss_dssp GGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHH
T ss_pred CCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHH
Confidence 69999999999999999999999998548999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.+++++|.++++|+++++++|+++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 82 ~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~ 140 (243)
T 1ryp_A 82 RNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEE 140 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999998889999999999999963
No 4
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.9e-46 Score=287.18 Aligned_cols=144 Identities=65% Similarity=1.015 Sum_probs=137.8
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
||+ +++||+++|+||||||++|||||++|++++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++
T Consensus 3 m~~--~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 3 RGS--SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp CSC--CCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCc--cCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 564 579999999999999999999999999865999999999999999999999988888889999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 81 TGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
||+.+|++.+.++++.++++|+++++++|+++.+++++++++|.|+++.+.|||+|++||||||++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~ 146 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEE 146 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETT
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999998889999999999999963
No 5
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.9e-46 Score=288.33 Aligned_cols=141 Identities=40% Similarity=0.661 Sum_probs=135.2
Q ss_pred CCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEecc
Q 031996 4 GSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGM 83 (149)
Q Consensus 4 ~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~ 83 (149)
+.+++||+++|+|||||||+|+|||++|+++ |+|+|||+++||||||+|++.+..+...++.+||++|++|++|++||+
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVEN-SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHhc-CCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 4677999999999999999999999999997 999999999999999999999977766788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 84 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 84 ~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
.+|++.++++++.+++.|+++++++|+++.+++++++++|.|++++++|||+|++||||||+
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~ 142 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV 142 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999888999999999999994
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.3e-45 Score=283.57 Aligned_cols=139 Identities=38% Similarity=0.593 Sum_probs=134.6
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
++||+++|+|||||||+|+|||++++++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 3 RGYSFSLTTFSPSGKLVQIEYALAAVAG-GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCSBSCCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCccCCceeECCCCeEehhHhHHHHHHc-CCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 5799999999999999999999999997 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~ 141 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG 141 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999998889999999999999954
No 7
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1e-45 Score=284.10 Aligned_cols=139 Identities=40% Similarity=0.640 Sum_probs=128.1
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
++||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVAD 84 (233)
T ss_dssp -------CCCCTTSCCHHHHHHHHHHTT-SCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHH
T ss_pred ccCCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHH
Confidence 5899999999999999999999999987 999999999999999999999987888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.+.++++.++++|+++++++++++.+++++++++|.|+++++.|||++++||||||++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~ 144 (233)
T 1yar_A 85 ARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI 144 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999998889999999999999963
No 8
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.4e-45 Score=285.49 Aligned_cols=140 Identities=35% Similarity=0.552 Sum_probs=133.3
Q ss_pred CCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHH
Q 031996 6 GGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTA 85 (149)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~ 85 (149)
|++||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.+...+..+||++|++|++|++||+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHC-CCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 46899999999999999999999999997 99999999999999999999997776666669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 86 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 86 D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
|++.+.++++.++++|+++++++++++.+++++++++|.||++++.|||++++||+|||++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~ 140 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN 140 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999998889999999999999964
No 9
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.8e-45 Score=284.31 Aligned_cols=137 Identities=39% Similarity=0.636 Sum_probs=132.7
Q ss_pred CCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHH
Q 031996 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADAR 88 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 88 (149)
||+++|+|||||||+|+|||++|+++ |+|+|||+++||||||+|++.++.++.+++.+||++|++|++|++||+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHT-SCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 99999999999999999999999997 99999999999999999999997788788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 89 TLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 89 ~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
.+.++++.++++|+++++++|+++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~ 139 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFD 139 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999998889999999999999943
No 10
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=6.3e-45 Score=281.40 Aligned_cols=137 Identities=36% Similarity=0.655 Sum_probs=132.6
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
+||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.+.. +++.+||++|++|++|++||+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISH-AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 799999999999999999999999987 999999999999999999999977766 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
++.+.++++.++++|+++++++|+++.+++++++++|.|+++++.|||+|++||||||+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~ 141 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD 141 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999989999999999999993
No 11
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.6e-45 Score=281.34 Aligned_cols=138 Identities=36% Similarity=0.614 Sum_probs=131.8
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccc-cccceeeecCcEEEEEeccHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~-~~~KI~~I~~~i~~~~sG~~~D 86 (149)
+||+++|+||||||++|+|||+||+++ |+|+|||+++||||||+|++.+..+...+ +.+||++|++|++|++||+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 599999999999999999999999987 99999999999999999999997666554 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.+.++++.+++.|+++++++|+++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~ 139 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPR 139 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCC
Confidence 999999999999999999999999999999999999999998889999999999999973
No 12
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=4.1e-45 Score=280.85 Aligned_cols=136 Identities=32% Similarity=0.520 Sum_probs=130.7
Q ss_pred CCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHH
Q 031996 8 GYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADA 87 (149)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (149)
+||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.+..+. ++.+||++|++|++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 4 NYDGDTVTFSPTGRLFQVEYALEAIKQ-GSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCccCCCCCeehHHHHHHHHHHc-CCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 699999999999999999999999997 99999999999999999999997765 477999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 88 RTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 88 ~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.++++++.+++.|+++++++||++.+++++++++|.||++.+.|||+|++||||||++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~ 139 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS 139 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999899999999999999964
No 13
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=9.6e-45 Score=280.89 Aligned_cols=137 Identities=44% Similarity=0.706 Sum_probs=133.1
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
++||+++|+|||||||+|+|||++++++ |+|+|||+++||||||+|++.+++++.+++.+||++|++|++|++||+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD 84 (246)
T 1j2p_A 6 MGYDRAITVFSPDGRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVAD 84 (246)
T ss_dssp TTSSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHH
T ss_pred cCcCCCCceECCCCeehHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHH
Confidence 3899999999999999999999999997 999999999999999999999988877888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEe
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIA 144 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D 144 (149)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D 142 (246)
T 1j2p_A 85 ARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN 142 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC
Confidence 9999999999999999999999999999999999999999988899999999999999
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=8.6e-45 Score=283.47 Aligned_cols=141 Identities=35% Similarity=0.561 Sum_probs=132.7
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCcccccc-ccccceeeecCcEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDH-TSVTHLFPITKYLGLL 79 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~-~~~~KI~~I~~~i~~~ 79 (149)
|++ +||+++|+|||||||+|+|||++|+++ |+|+|||+++||||||+|++.+..+... ++.+||++|++|++|+
T Consensus 1 m~~----~yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~ 75 (261)
T 1iru_C 1 MSR----RYDSRTTIFSPEGRLYQVEYAMEAIGH-AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACS 75 (261)
T ss_dssp -CT----TTCCCTTCCCTTSCCHHHHHHHHHHTT-SCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEE
T ss_pred CCC----ccCCCCccCCCCCeehHHHhHHHHHhc-CCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEE
Confidence 665 899999999999999999999999987 9999999999999999999999666554 4589999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 80 ATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 80 ~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+||+.+|++.++++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 76 ~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~ 142 (261)
T 1iru_C 76 VAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKH 142 (261)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETT
T ss_pred EeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999998889999999999999963
No 15
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.7e-44 Score=280.01 Aligned_cols=141 Identities=33% Similarity=0.492 Sum_probs=135.8
Q ss_pred CCCCCCCCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEE
Q 031996 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLA 80 (149)
Q Consensus 1 m~~~~~~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~ 80 (149)
|++ +||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.++.++.+++.+||++|++|++|++
T Consensus 1 ~~~----~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 75 (250)
T 1ryp_B 1 MTD----RYSFSLTTFSPSGKLGQIDYALTAVKQ-GVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVY 75 (250)
T ss_dssp CCC----CCCSBSSCBCTTSCBHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEE
T ss_pred CCC----cccCCceeECCCCccHHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEe
Confidence 665 899999999999999999999999997 999999999999999999999988888889999999999999999
Q ss_pred eccHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 81 TGMTADARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 81 sG~~~D~~~l~~~~r~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
||+.+|++.+.++++.+++. |++.++.+++++.+++.++++++.++++.++|||+|++||||||++
T Consensus 76 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~ 142 (250)
T 1ryp_B 76 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEF 142 (250)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETT
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCC
Confidence 99999999999999999999 9999999999999999999999999998888999999999999974
No 16
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=3.5e-44 Score=280.44 Aligned_cols=137 Identities=34% Similarity=0.576 Sum_probs=131.4
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
++||+++|+|||||||+|+|||+||+++ |+|+|||+++||||||+|++.+..+. ++.+||++|++|++|++||+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQ-GSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHH-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHc-CCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 5799999999999999999999999997 99999999999999999999997764 47799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++.++++++.+++.|+++++++|+++.+++++++++|.|+++++.|||+|++||||||++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~ 140 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM 140 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCC
Confidence 999999999999999999999999999999999999999998889999999999999964
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=8.9e-45 Score=280.22 Aligned_cols=138 Identities=33% Similarity=0.642 Sum_probs=130.9
Q ss_pred CCCCcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHH
Q 031996 7 GGYDRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTAD 86 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (149)
++||+++|+||||||++|+|||++|+++ |+|+|||+++||||||+|++.+..+..+++.+||++|++|++|++||+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (241)
T 1iru_E 6 SEYDRGVNTFSPEGRLFQVEYDIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIAD 84 (241)
T ss_dssp --CCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCceECCCCccHHHHHHHHHHHc-CCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHH
Confidence 5899999999999999999999999987 999999999999999999999976666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----ccccceEEEEEEEeC
Q 031996 87 ARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----MRPLGVGLFLIEIAI 145 (149)
Q Consensus 87 ~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~liaG~D~ 145 (149)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||+|++||||||+
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~ 148 (241)
T 1iru_E 85 AKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC
Confidence 99999999999999999999999999999999999999998777 899999999999994
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.1e-43 Score=274.07 Aligned_cols=136 Identities=35% Similarity=0.609 Sum_probs=129.9
Q ss_pred CcccceeCCCCcchhhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHH
Q 031996 10 DRHITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADART 89 (149)
Q Consensus 10 d~~~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 89 (149)
|+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.++.+..+++.+||++|++|++|++||+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKL-GSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHc-CCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 6789999999999999999999987 999999999999999999999977766788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC------ccccceEEEEEEEeCC
Q 031996 90 LVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------MRPLGVGLFLIEIAIP 146 (149)
Q Consensus 90 l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~------~rP~~v~~liaG~D~~ 146 (149)
++++++.+++.|+++++++++++.+++++++++|.|+++++ .|||+|++||||||++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~ 142 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 142 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCC
Confidence 99999999999999999999999999999999999998877 8999999999999943
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1e-33 Score=220.73 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=110.3
Q ss_pred ceeCCCCcch-hhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHHHHH
Q 031996 14 TIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQ 92 (149)
Q Consensus 14 t~fsp~G~~~-Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~ 92 (149)
--|||||++. |+|||++++++ |+|+|||+++||||||+|++ .++.+||++|++|++|++||+.+|++.+++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIAR-GRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHT-SCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 3589999995 99999999997 99999999999999999998 357889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHHhhcCCccccceEEEEEEEe
Q 031996 93 QARYEAAEFRFKYG-YEMPVDVLAKWIAD-KSQVYTQHAYMRPLGVGLFLIEIA 144 (149)
Q Consensus 93 ~~r~~~~~~~~~~~-~~~~~~~la~~l~~-~~~~~t~~~~~rP~~v~~liaG~D 144 (149)
+++.+++.|++.++ ++|+++.+++++++ +.|.|+. +.|||+|++||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D 128 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVG 128 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEc
Confidence 99999999999998 49999999999999 6677873 789999999999999
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.97 E-value=4.4e-31 Score=204.78 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=106.4
Q ss_pred hhhhHHHHhhccCceEEEEEcCCeEEEEEeccCCccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHH
Q 031996 24 QVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 103 (149)
Q Consensus 24 Q~eya~~av~~~G~t~igik~kdgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 103 (149)
++|||+||+++ |+|+|||+++||||||+|++ .++.+||++|++|++|+++|+.+|++.|.+.++.+++.|++
T Consensus 16 r~EYA~~av~~-GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~ 87 (248)
T 3mi0_A 16 RSELARKGIAR-AKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGY 87 (248)
T ss_dssp HHHHHHHHHHT-SCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhC-CCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHH
Confidence 57999999987 99999999999999999999 34788999999999999999999999999999999999999
Q ss_pred HhC-CCCCHHHHHHHHH-HHHHHHhhcCCccccceEEEEEEEeC
Q 031996 104 KYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 104 ~~~-~~~~~~~la~~l~-~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
+++ ++++++.|+++++ .+.|.|++ ++|||+|++||||||+
T Consensus 88 ~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~ 129 (248)
T 3mi0_A 88 AYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAH 129 (248)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCC
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcC
Confidence 999 9999999999999 77888987 7999999999999997
No 21
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.97 E-value=4.2e-30 Score=203.33 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=98.2
Q ss_pred CCCCcccceeCCCCcc-----hh--hhhHHHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEE
Q 031996 7 GGYDRHITIFSPEGRL-----FQ--VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGL 78 (149)
Q Consensus 7 ~~yd~~~t~fsp~G~~-----~Q--~eya~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~ 78 (149)
..|+.-.....||.-. ++ .|||++ +++ |+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~-GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPH-GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccC-CcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 3565556666666332 22 689999 876 9999999999999999999998 457778889999999999999
Q ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 79 LATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 79 ~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
++||+.+|++.++++++.+++.|+++++++++++.+++.+++++|.++. ...|||+|++||||||+++
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g 168 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHA 168 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTC
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999998865 3578999999999999753
No 22
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=99.96 E-value=1e-29 Score=201.40 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhC
Q 031996 28 AFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG 106 (149)
Q Consensus 28 a~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 106 (149)
|+||+++ |+|+|||+++||||||+|++.+ ++++..++.+||++|++|++|++||+.+|++.++++++.++++|+++++
T Consensus 58 a~~Av~~-GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPH-GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCB-CCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 8899987 9999999999999999999999 5888888999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 107 YEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 107 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++++.++++|++++|.++++ ..|||+|++||+|||++
T Consensus 137 ~~isv~~la~~la~~l~~~~~~-~~rp~~v~lLvaG~D~~ 175 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGA-AMQGLAVVPLLVGYDLD 175 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HTTTTCEEEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhh-hcCCcceEEEEEEEeCC
Confidence 9999999999999999998875 38999999999999976
No 23
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=99.96 E-value=1.2e-29 Score=194.66 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=106.1
Q ss_pred HHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHH-----
Q 031996 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF----- 103 (149)
Q Consensus 30 ~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~----- 103 (149)
+++++ |+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccC-CceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 56776 9999999999999999999998 5788888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 104 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 104 ~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++|+++.++++++++++ +++.+.|||++++||||||++
T Consensus 82 ~~~~~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~ 122 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMY--QRRSKMNPLWNAIIVAGVQSN 122 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEECTT
T ss_pred hcCCCCCHHHHHHHHHHHHH--HhcCCCCCceEEEEEEEEcCC
Confidence 99999999999999999996 455578999999999999975
No 24
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=99.96 E-value=5.5e-29 Score=189.19 Aligned_cols=110 Identities=25% Similarity=0.473 Sum_probs=99.8
Q ss_pred HHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031996 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYE 108 (149)
Q Consensus 30 ~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 108 (149)
+++.+ |+|+|||+++||||||+|++.+ ++++.+++.+||++|+++++|++||+.+|++.+.++++.+++.|+++++++
T Consensus 3 ~~~~~-Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLET-GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCC-CccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35665 9999999999999999999998 578888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEe
Q 031996 109 MPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIA 144 (149)
Q Consensus 109 ~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D 144 (149)
++++.+++++++.+|.+ +.|||++++||||||
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D 113 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID 113 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC
Confidence 99999999999999864 478999999999999
No 25
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=99.96 E-value=8e-29 Score=187.46 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=101.6
Q ss_pred hhccCceEEEEEcCCeEEEEEeccCCccc-cccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 031996 32 VKAAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMP 110 (149)
Q Consensus 32 v~~~G~t~igik~kdgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~ 110 (149)
+++ |+|+|||+++||||||+|++.++.+ +..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++
T Consensus 6 v~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 6 VFN-GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCC-CCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCC-CCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 444 9999999999999999999999554 44578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 111 VDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 111 ~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
++.++++++++++ +++ .|||++++||||||+++
T Consensus 85 v~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~~g 117 (213)
T 1iru_M 85 TGAIAAMLSTILY--SRR--FFPYYVYNIIGGLDEEG 117 (213)
T ss_dssp HHHHHHHHHHHHH--HTT--TSCCCEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHH--hhC--CCCceEEEEEEEEcCCC
Confidence 9999999999984 553 79999999999999754
No 26
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=99.96 E-value=1.3e-29 Score=192.65 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=106.0
Q ss_pred HHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHH-HhCC
Q 031996 30 KAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGY 107 (149)
Q Consensus 30 ~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-~~~~ 107 (149)
+++++ |+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|++ ++++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVT-GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSE-ECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccC-CceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56776 9999999999999999999998 5888888999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.++++++++++. ++++.|||++++||||||+.
T Consensus 82 ~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~~ 118 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYS--RRSKMNPLWNTMVIGGYADG 118 (219)
T ss_dssp CCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH--hcccCCCceEEEEEEEEECC
Confidence 99999999999999964 45578999999999999964
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=99.96 E-value=8.1e-29 Score=195.63 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=100.8
Q ss_pred hhHHHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHH
Q 031996 26 EYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK 104 (149)
Q Consensus 26 eya~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~ 104 (149)
.++..++.+ |+|+|||+++||||||+|++.+ +.++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++
T Consensus 66 ~~~~~~v~~-GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~ 144 (287)
T 3nzj_K 66 PDCKIKIAH-GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELR 144 (287)
T ss_dssp -----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhecc-CceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367889986 9999999999999999999998 68888889999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 105 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 105 ~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++++++.+++++++++|.|++ +||++++||||||++
T Consensus 145 ~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~ 182 (287)
T 3nzj_K 145 EKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRK 182 (287)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETT
T ss_pred hCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCC
Confidence 99999999999999999997764 399999999999954
No 28
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=99.96 E-value=2.5e-29 Score=196.55 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=108.5
Q ss_pred hhhHHHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHH
Q 031996 25 VEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF 103 (149)
Q Consensus 25 ~eya~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~ 103 (149)
.+.+++++++ |+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+++++|.+++.|++
T Consensus 31 ~~~~~~av~~-GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 31 MVNTQQPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ---CCCCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhccCccc-CceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 4667889986 9999999999999999999998 5778888999999999999999999999999999999999999998
Q ss_pred -----HhCCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 104 -----KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 104 -----~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++++.++++++++++ +++.+.|||+|++||||||++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~ 155 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVMY--QRRSKMNPLWNAIIVAGVQSN 155 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEECTT
T ss_pred ccchhhcCCCCCHHHHHHHHHHHHH--HhccCCCCceEEEEEEEEcCC
Confidence 99999999999999999985 455578999999999999975
No 29
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1e-28 Score=188.07 Aligned_cols=107 Identities=20% Similarity=0.326 Sum_probs=100.4
Q ss_pred CceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 36 GVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 36 G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
|+|+|||+++||||||+|++.+ +.++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7899999999999999999998 457778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++++++|.+ +.|||+|++||||||++
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~ 108 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLL 108 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETT
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCC
Confidence 99999999865 46899999999999973
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=99.96 E-value=2.2e-28 Score=187.90 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=103.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ ++++.+++.+||++|+++++|++||+.+|++.++++++.+++.|+++++++|+++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 589999999999999999999 5888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+.+++++|.++++ ..|||+|++||||||++
T Consensus 81 ~~l~~~~~~~~~~-~~rp~~v~~lvaG~D~~ 110 (235)
T 1q5q_H 81 NRLASMVRGNLGA-AMQGLAVVPLLVGYDLD 110 (235)
T ss_dssp HHHHHHHHTTHHH-HTTTCCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHh-hhcccceEEEEEEEECC
Confidence 9999999998875 38999999999999976
No 31
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=99.96 E-value=3.6e-28 Score=182.48 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=100.3
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++|+++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999998 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.+ +.|||++++||||||++
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~~ 107 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDSE 107 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEETT
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeCC
Confidence 9999999863 47899999999999964
No 32
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.96 E-value=1.6e-28 Score=184.96 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=103.4
Q ss_pred HHHhhccCceEEEEEcCCeEEEEEeccCCcc-ccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCC
Q 031996 29 FKAVKAAGVTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 107 (149)
Q Consensus 29 ~~av~~~G~t~igik~kdgVvlaad~~~~~~-l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 107 (149)
.+++++ |+|+|||+++||||||+|++.+.. ++.+++.+||++|++|++|++||+.+|++.+.++++.++++|++++++
T Consensus 3 ~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSL-GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCBC-CCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcC-CceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467876 999999999999999999999854 777888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++.+++++++++|.|+++ |++++||||||++
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~ 114 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDK 114 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecC
Confidence 99999999999999988652 9999999999973
No 33
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=99.96 E-value=6e-28 Score=184.03 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=101.7
Q ss_pred hhccCceEEEEEcCCeEEEEEeccCCccc-cccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 031996 32 VKAAGVTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEM 109 (149)
Q Consensus 32 v~~~G~t~igik~kdgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~-~~~ 109 (149)
+++ |+|+|||+++||||||+|++.+..+ +..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++ +++
T Consensus 6 v~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 6 GDN-GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCC-CCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccC-CccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 454 9999999999999999999999544 4677899999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCCC
Q 031996 110 PVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIPS 147 (149)
Q Consensus 110 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~~ 147 (149)
+++.+|+++++.++ ++ +.|||++++||||||+++
T Consensus 85 ~v~~la~~l~~~ly--~~--r~~P~~v~~ivaG~D~~g 118 (222)
T 1ryp_M 85 SINSAARNIQHLLY--GK--RFFPYYVHTIIAGLDEDG 118 (222)
T ss_dssp CHHHHHHHHHHHHH--TT--TTSCCCEEEEEEEECTTS
T ss_pred CHHHHHHHHHHHHH--hc--CCCCceEEEEEEEEcCCC
Confidence 99999999999985 43 478999999999999754
No 34
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=99.95 E-value=7.3e-28 Score=180.23 Aligned_cols=107 Identities=14% Similarity=0.178 Sum_probs=98.9
Q ss_pred ceEEEEEcCCeEEEEEeccCCcc-ccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~-l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+.. ++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999844 44467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
+++++.+|.+++ ..+||++++||||||+
T Consensus 82 ~~l~~~l~~~~~--~r~p~~v~~lvaG~D~ 109 (198)
T 1ryp_K 82 SFVRQELAKSIR--SRRPYQVNVLIGGYDK 109 (198)
T ss_dssp HHHHHHHHHHTT--SSSCCCEEEEEEEEET
T ss_pred HHHHHHHHHhcc--cCCCceEEEEEEEEeC
Confidence 999999998874 2359999999999996
No 35
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=99.95 E-value=6.1e-28 Score=181.62 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=99.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCcc-ccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~-l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.++. ++.+++.+||++|++|++|++||+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999955 77788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.|++ ||++++||||||++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~ 106 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQ 106 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETT
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCC
Confidence 999999998764 99999999999974
No 36
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.95 E-value=8.1e-28 Score=187.68 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred HHHhhccCceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCC
Q 031996 29 FKAVKAAGVTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY 107 (149)
Q Consensus 29 ~~av~~~G~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 107 (149)
.||+++ |+|+|||+++||||||+|++.+ +.++..++.+||++|++|++|++||+.+|++.+.++++.+++.|++++++
T Consensus 23 ~kav~~-GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 23 PKATST-GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred Cccccc-CceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 688986 9999999999999999999998 56777889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 108 EMPVDVLAKWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 108 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.+++++++.++.| .|||++++||||||++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~ 135 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPT 135 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCC
Confidence 999999999999998743 4699999999999974
No 37
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.95 E-value=2.4e-27 Score=178.26 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=97.9
Q ss_pred cCceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 113 (149)
+|+|+|||+++||||||+|++.+..+.. .++.+||++|+ |++|++||+.+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 4999999999999999999999965554 45899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 114 LAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
+++++++++ |+++ ..||++++||||||+
T Consensus 86 la~~l~~~~--y~~~--~~P~~v~~lvaG~D~ 113 (204)
T 1ryp_J 86 FTQLVSSSL--YERR--FGPYFVGPVVAGINS 113 (204)
T ss_dssp HHHHHHHHH--HTTT--TSCCCEEEEEEEECT
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeC
Confidence 999999999 5664 349999999999996
No 38
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=99.95 E-value=1.3e-27 Score=180.76 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=100.5
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ ++++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 589999999999999999998 4788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.|++. ||++++||||||++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~ 107 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRK 107 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETT
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCC
Confidence 9999999988753 99999999999953
No 39
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.95 E-value=1.2e-27 Score=180.05 Aligned_cols=107 Identities=17% Similarity=0.320 Sum_probs=98.8
Q ss_pred cCceEEEEEcCCeEEEEEeccCCccccc-cccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDV 113 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~~~l~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 113 (149)
+|+|+|||+++||||||+|++.+..+.. .++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 4999999999999999999999965554 458899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccceEEEEEEEeC
Q 031996 114 LAKWIADKSQVYTQHAYMRPLGVGLFLIEIAI 145 (149)
Q Consensus 114 la~~l~~~~~~~t~~~~~rP~~v~~liaG~D~ 145 (149)
+++++++++ |+++ ..||++++||||||+
T Consensus 87 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~ 114 (205)
T 1iru_J 87 LMSMVANLL--YEKR--FGPYYTEPVIAGLDP 114 (205)
T ss_dssp HHHHHHHHH--HTTT--TSCCSCCCEEEEECT
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeC
Confidence 999999999 5653 459999999999995
No 40
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=99.95 E-value=1.4e-27 Score=178.77 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=98.9
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
||+|||+++||||||+|++.+ +.++..++.+||++|++|++|++||+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 699999999999999999998 4577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.+ .|||++++||||||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~ 106 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQR 106 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETT
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCC
Confidence 9999999854 4599999999999974
No 41
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=99.95 E-value=3.1e-27 Score=177.67 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=99.7
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999998 4788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++++|.++ .+||+|++||||||++
T Consensus 81 ~~l~~~~~~~r----~~~~~v~~lvaG~D~~ 107 (204)
T 1iru_L 81 KLLANMVYQYK----GMGLSMGTMICGWDKR 107 (204)
T ss_dssp HHHHHHHHTTT----TSCCCBEEEEEEECSS
T ss_pred HHHHHHHHHhC----CCCeeEEEEEEEEeCC
Confidence 99999999764 3599999999999964
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=99.95 E-value=7.2e-27 Score=175.27 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=98.2
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999999999998 4788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.+..+ .+ ..|||++++||||||++
T Consensus 82 ~~~~~~l~~~-~~-~~~p~~~~~lvaG~D~~ 110 (201)
T 1iru_K 82 NFTRRNLADC-LR-SRTPYHVNLLLAGYDEH 110 (201)
T ss_dssp HHHHHHHHHH-HT-SSSCCCEEEEEEEEETT
T ss_pred HHHHHHHHHH-Hh-cCCCccEEEEEEEEeCC
Confidence 9998876322 22 33799999999999974
No 43
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=99.94 E-value=1.3e-26 Score=178.31 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=97.6
Q ss_pred ceEEEEEcCCeEEEEEeccCCccc-cccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
||+|||+++||||||+|+|.++.+ +..++.+||++|++|++|++||+.+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 699999999999999999999554 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
++++++++.| .+||++++||||||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~ 106 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLN 106 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETT
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCC
Confidence 9999999854 3599999999999974
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=99.94 E-value=1.8e-26 Score=175.88 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=97.4
Q ss_pred ceEEEEEcCCeEEEEEeccCCcc-ccccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDK-LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~-l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.++. ++..++.+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999854 45567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.++.| .|||++++||||||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~ 106 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPT 106 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETT
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCC
Confidence 9999998754 4799999999999974
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.94 E-value=7.4e-26 Score=173.87 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=96.9
Q ss_pred ceEEEEEcCCeEEEEEeccCCccc-cccccccceeeecCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVPDKL-LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLA 115 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~~~l-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la 115 (149)
+|+|||+++||||||+|++.+..+ +..++.+||++|++|++|++||+.+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 589999999999999999998554 4457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccceEEEEEEEeCC
Q 031996 116 KWIADKSQVYTQHAYMRPLGVGLFLIEIAIP 146 (149)
Q Consensus 116 ~~l~~~~~~~t~~~~~rP~~v~~liaG~D~~ 146 (149)
+++++.+|.| .+||++++||||||++
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~ 106 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVT 106 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSS
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCC
Confidence 9999998765 3599999999999974
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.88 E-value=1.1e-22 Score=150.48 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=85.2
Q ss_pred cCceEEEEEcCCeEEEEEeccCC-ccc-cccccccceeee-cCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Q 031996 35 AGVTSIGVRGKDSVCVVTQKKVP-DKL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPV 111 (149)
Q Consensus 35 ~G~t~igik~kdgVvlaad~~~~-~~l-~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~ 111 (149)
+|+|+|||+++||||||+|++.+ +.+ +.+++.+||++| ++|+++++||+.+|++.+.++++.++++|+ + +
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~-- 76 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N-- 76 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C--
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C--
Confidence 49999999999999999999998 467 888999999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEE
Q 031996 112 DVLAKWIADKSQVYTQHAYMRPLGVGLFLI 141 (149)
Q Consensus 112 ~~la~~l~~~~~~~t~~~~~rP~~v~~lia 141 (149)
+.+.++.+.+.+++....|||++++||+
T Consensus 77 --~~~~~~~l~~~~~~~~~~rp~~~~~lva 104 (180)
T 2z3b_A 77 --LKRAAVELAKEWRSDKVLRKLEAMLIVM 104 (180)
T ss_dssp --HHHHHHHHHHHHHHCTTGGGCCCCEEEE
T ss_pred --hHHHHHHHHHHHHhhhCcCcceEEEEEE
Confidence 3333444555566677889999999999
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.87 E-value=3.3e-22 Score=146.57 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=81.7
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeee-cCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++| ++|+++++||+.+|++.+.+++|.++++|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 589999999999999999998 578888899999999 99999999999999999999999999998744 24444
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEE
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLI 141 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~lia 141 (149)
++. .+.+++++..|||++++|++
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~ 98 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA 98 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE
Confidence 443 33445555678999999998
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.86 E-value=1.6e-21 Score=143.27 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=81.1
Q ss_pred ceEEEEEcCCeEEEEEeccCC-ccccccccccceeee-cCcEEEEEeccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 031996 37 VTSIGVRGKDSVCVVTQKKVP-DKLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVL 114 (149)
Q Consensus 37 ~t~igik~kdgVvlaad~~~~-~~l~~~~~~~KI~~I-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 114 (149)
+|+|||+++||||||+|++.+ +.++.+++.+||++| ++|+++++||+.+|++.+.+++|.++++|+. ++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 589999999999999999998 457788899999999 9999999999999999999999999999875 33
Q ss_pred HHHHHHHHHHHhhcCCccccceEEEEEEEe
Q 031996 115 AKWIADKSQVYTQHAYMRPLGVGLFLIEIA 144 (149)
Q Consensus 115 a~~l~~~~~~~t~~~~~rP~~v~~liaG~D 144 (149)
...++.+.+.+++++..||++ ++++|+|
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d 99 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD 99 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC
Confidence 344444455556666677865 6777777
No 49
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=54.67 E-value=10 Score=26.99 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=28.1
Q ss_pred cceeCCCCcch-hhhhHHHHhhccCceEEEEEc
Q 031996 13 ITIFSPEGRLF-QVEYAFKAVKAAGVTSIGVRG 44 (149)
Q Consensus 13 ~t~fsp~G~~~-Q~eya~~av~~~G~t~igik~ 44 (149)
+-+||+.|+-. -+|-|+++-++ |.++|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~-G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAW-HTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHH-TCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHC-CCcEEEEeC
Confidence 67899999987 89999999987 999999988
No 50
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=52.43 E-value=9.7 Score=27.94 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=26.0
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEEc
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRG 44 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik~ 44 (149)
|.||++|...--|++.+|.++ |-+.|+++-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~-Gl~~iaiTD 37 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAK-GLKGVVFTD 37 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHT-TCSEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHc-CCCEEEEcC
Confidence 468899999888999999986 999999964
No 51
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.28 E-value=16 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCcccceeCCCCcchhhh-------hHHHHhhccCceEEEEEc
Q 031996 9 YDRHITIFSPEGRLFQVE-------YAFKAVKAAGVTSIGVRG 44 (149)
Q Consensus 9 yd~~~t~fsp~G~~~Q~e-------ya~~av~~~G~t~igik~ 44 (149)
|...+.+|.|+|.+..++ .|...-...|..++|.+-
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV 46 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV 46 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE
Confidence 556789999999998744 333322223446777766
No 52
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=32.25 E-value=69 Score=21.22 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 83 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 83 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
++.|--.+++++| .|..+++..++++.|++.+...+
T Consensus 46 LTe~HW~VI~flR----~~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYLR----DYFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHHH----HHHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHHHHh
Confidence 6677778888886 45667899999999999985444
No 53
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=31.51 E-value=1e+02 Score=20.93 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031996 83 MTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKS 122 (149)
Q Consensus 83 ~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~~ 122 (149)
++.|=-.+++++| .|..+++..++++.|++.+...+
T Consensus 62 LTe~HWeVI~flR----~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLR----EYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHH----HHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----HHHHHHCCCChHHHHHHHHHHHh
Confidence 6677778888886 45666899999999999886555
No 54
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=29.23 E-value=38 Score=24.27 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=25.3
Q ss_pred Cccc-ceeCCCCcchhhhhHHHHhhccCceEEEEEc
Q 031996 10 DRHI-TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRG 44 (149)
Q Consensus 10 d~~~-t~fsp~G~~~Q~eya~~av~~~G~t~igik~ 44 (149)
|.++ |.||++|...--|++..|.++ |-+.|+++=
T Consensus 5 DlH~Ht~~Sd~g~~~~~e~v~~A~~~-Gl~~iaiTD 39 (245)
T 1m65_A 5 DLHMHTVASTHAYSTLSDYIAQAKQK-GIKLFAITD 39 (245)
T ss_dssp ECCBCCTTSTTCCCCHHHHHHHHHHH-TCCEEEEEE
T ss_pred EeCcCCCCCCCCCCcHHHHHHHHHHC-CCCEEEECC
Confidence 4443 357877875566999999986 999999974
No 55
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=29.10 E-value=14 Score=24.87 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=12.5
Q ss_pred CCcccceeCCCCcch
Q 031996 9 YDRHITIFSPEGRLF 23 (149)
Q Consensus 9 yd~~~t~fsp~G~~~ 23 (149)
-|..+|.|+|+||+.
T Consensus 55 m~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 55 MRHRVTFFNATGRYI 69 (138)
T ss_dssp CEEEEEEECTTSCEE
T ss_pred ceeEEEEEcCCCcEE
Confidence 467899999999874
No 56
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.74 E-value=68 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=23.2
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+-.||..|+-..+--+.+..++.|.++|+|+...
T Consensus 113 vI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 113 LLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457777877776666666666687888887643
No 57
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=26.70 E-value=68 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=23.1
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.||..|+-..+--+.+..++.|.++|+|++.
T Consensus 117 vI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 117 LLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 345777787776666666666668888888765
No 58
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=24.54 E-value=83 Score=21.39 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=24.6
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.+|..|+-..+--+.+..++.|.++|+|+..
T Consensus 83 vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 83 VIIGSGSGETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 556888888777666666666668889988775
No 59
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.23 E-value=71 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=21.9
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.||..|+-..+--+.+..++.|.++|+|++.
T Consensus 135 vI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 135 LLGISTSGNSANVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHHTCEEEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 345677777766655655555568788888764
No 60
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=24.20 E-value=81 Score=21.63 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=20.2
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
+-.||..|+-..+--+.+..++.|.++|+|+..
T Consensus 120 vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~ 152 (198)
T 2xbl_A 120 LIGYSTSGKSPNILAAFREAKAKGMTCVGFTGN 152 (198)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 345666676655555555555557777777664
No 61
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.01 E-value=78 Score=21.43 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=25.7
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+-.||..|+-..+--+.+..++.|.++|+|+...
T Consensus 86 vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 86 LILISGSGRTESVLTVAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp EEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5568888887777666666666798999998754
No 62
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.39 E-value=1e+02 Score=20.92 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=24.5
Q ss_pred cceeCCCCcchhhhhHHHHhhccCceEEEEEcCC
Q 031996 13 ITIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGKD 46 (149)
Q Consensus 13 ~t~fsp~G~~~Q~eya~~av~~~G~t~igik~kd 46 (149)
+-.||..|+-..+--+.+..++.|.++|+|+...
T Consensus 91 ~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 91 MIGVSVWRYLRDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4567778887776666666666688999998743
No 63
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=21.18 E-value=65 Score=23.52 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=25.7
Q ss_pred Ccccc-eeCCCCcchhhhhHHHHhhccCceEEEEEc
Q 031996 10 DRHIT-IFSPEGRLFQVEYAFKAVKAAGVTSIGVRG 44 (149)
Q Consensus 10 d~~~t-~fsp~G~~~Q~eya~~av~~~G~t~igik~ 44 (149)
|.++. .|| +|...--|++..|.++ |-..||++=
T Consensus 23 DlH~Ht~~S-Dg~~t~ee~v~~A~~~-Gl~~i~iTD 56 (255)
T 2anu_A 23 DFHVHTNMS-DGHLPLGEVVDLFGKH-GVDVVSITD 56 (255)
T ss_dssp EEEECCTTT-TCSSCHHHHHHHHHHT-TCSEEEEEE
T ss_pred EEeecCCCc-CCCCCHHHHHHHHHHC-CCCEEEEcC
Confidence 44443 377 9999888999999886 989998864
No 64
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=20.69 E-value=46 Score=22.19 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.9
Q ss_pred EEEEEeCCC
Q 031996 139 FLIEIAIPS 147 (149)
Q Consensus 139 liaG~D~~~ 147 (149)
|+||.|.++
T Consensus 96 LlAGhd~~G 104 (119)
T 1njh_A 96 LMAGHLPGG 104 (119)
T ss_dssp EEEEEETTT
T ss_pred EEcccCCCC
Confidence 444444443
No 65
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=20.19 E-value=75 Score=21.60 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=19.0
Q ss_pred ceeCCCCcchhhhhHHHHhhccCceEEEEEcC
Q 031996 14 TIFSPEGRLFQVEYAFKAVKAAGVTSIGVRGK 45 (149)
Q Consensus 14 t~fsp~G~~~Q~eya~~av~~~G~t~igik~k 45 (149)
-.||..|+-..+--+.+..++.|.++|+|++.
T Consensus 115 i~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 115 IGISTSGKSPNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp EEECSSSCCHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34666666665555555555557677766653
Done!