Query 031998
Match_columns 149
No_of_seqs 111 out of 128
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxr_B Mitochondrial import in 89.1 0.74 2.5E-05 32.3 5.2 63 80-144 23-85 (95)
2 3cjh_B Mitochondrial import in 84.6 1.1 3.9E-05 28.7 3.8 58 83-143 5-62 (64)
3 3cjh_A Mitochondrial import in 82.9 1.2 4.1E-05 28.8 3.4 27 120-146 30-56 (64)
4 3dxr_A Mitochondrial import in 81.4 4 0.00014 27.9 5.8 58 83-143 21-78 (89)
5 2bsk_A Mitochondrial import in 80.6 1.4 4.9E-05 30.2 3.3 55 87-144 16-70 (89)
6 2bsk_B Mitochondrial import in 78.4 0.81 2.8E-05 31.4 1.5 64 79-144 9-72 (90)
7 3dxr_A Mitochondrial import in 76.1 3.7 0.00013 28.0 4.3 75 1-89 3-80 (89)
8 2plx_B Peptide inhibitor; heli 71.8 2.3 8E-05 22.8 1.9 23 49-71 2-25 (26)
9 2cmy_B Beta trypsin, veronica 58.6 4.6 0.00016 22.9 1.5 25 48-72 6-31 (34)
10 3twe_A Alpha4H; unknown functi 34.3 28 0.00095 18.7 2.1 14 81-94 6-19 (27)
11 2kxc_B ESPF-like protein; IRTK 23.4 15 0.00053 22.7 -0.2 17 1-17 10-26 (48)
12 2bsk_A Mitochondrial import in 23.3 1.2E+02 0.0041 20.3 4.4 42 47-89 26-71 (89)
13 2ibf_B Invasin IPAA, 70 kDa an 22.8 42 0.0014 17.8 1.5 21 17-37 5-25 (26)
14 2akf_A Coronin-1A; coiled coil 20.7 1.1E+02 0.0036 17.1 2.9 22 15-36 3-24 (32)
15 4g3b_A Alpha4F3D; alpha helix, 20.2 72 0.0025 16.9 2.1 14 82-95 7-20 (26)
No 1
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.74 Score=32.28 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998 80 HFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ 144 (149)
Q Consensus 80 ~vq~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~ 144 (149)
..+.|+..|++-+++=+-.|-+|=-++.-++ .++...=+.|+..||++|+..--.|.+|+.+.
T Consensus 23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~--~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~ 85 (95)
T 3dxr_B 23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSE--GELNKNESSCLDRCVAKYFETNVQVGENMQKM 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999998888888887654421011 11112236899999999998877788887653
No 2
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=84.56 E-value=1.1 Score=28.70 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998 83 NEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT 143 (149)
Q Consensus 83 ~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~ 143 (149)
.++..||+-+++=+-.|.+|=-+.+.. .++...=++|+..||++|+..--.+.+++.+
T Consensus 5 ~~~~~~~~~~~~lt~~Cf~kCv~~~~~---~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 5 NSKQKVQMSIHQFTNICFKKCVESVND---SNLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCCSS---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCC---CcCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777666666666554333111 1111223689999999999877777777654
No 3
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=82.91 E-value=1.2 Score=28.80 Aligned_cols=27 Identities=7% Similarity=0.406 Sum_probs=22.2
Q ss_pred HhHHHHHHHhHhhCChHHHHHHHhhhc
Q 031998 120 ESCVNQSIDDNIKTLPPLVERLKTQFS 146 (149)
Q Consensus 120 e~Cv~~Cvd~hi~lLP~l~krmk~~l~ 146 (149)
++|+..||++|+..--.+.+++-+.+.
T Consensus 30 ~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 30 DACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999888888888766543
No 4
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=81.39 E-value=4 Score=27.91 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998 83 NEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT 143 (149)
Q Consensus 83 ~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~ 143 (149)
..+..|++-+++=+-.|.+|=-+.+..+ .+...=++|+..||++|+..--.|.+|+.+
T Consensus 21 ~q~k~~~~l~~~lte~Cf~kCv~~~~~~---~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~ 78 (89)
T 3dxr_A 21 KQMKDFMRLYSNLVERCFTDCVNDFTTS---KLTNKEQTCIMKCSEKFLKHSERVGQRFQE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCSSS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677666666666665543321111 111222689999999999887777777765
No 5
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=80.57 E-value=1.4 Score=30.21 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998 87 KFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ 144 (149)
Q Consensus 87 ~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~ 144 (149)
+|++-+++=+-.|.+|=-+.+.. ..+...=++|+..||++|+..--.|.+|+.+.
T Consensus 16 ~~~~l~n~lte~Cf~KCv~~~~~---~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 70 (89)
T 2bsk_A 16 EFLGTYNKLTETCFLDCVKDFTT---REVKPEETTCSEHCLQKYLKMTQRISMRFQEY 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSS---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCCC---CcCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35655555555555543322111 11112236899999999998877788887654
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=78.43 E-value=0.81 Score=31.45 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998 79 QHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ 144 (149)
Q Consensus 79 ~~vq~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~ 144 (149)
-.-+.++..|++-+++=+-.|.+|=-+..-++ .++...=++|+..||++|+..--.+.+|+.+.
T Consensus 9 ~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~--~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 72 (90)
T 2bsk_B 9 LAAELEVEMMADMYNRMTSACHRKCVPPHYKE--AELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72 (90)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHCCTTCCS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCc--CcCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788777776666666543211011 11112236899999999998777777777654
No 7
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=76.08 E-value=3.7 Score=28.04 Aligned_cols=75 Identities=15% Similarity=0.372 Sum_probs=37.8
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhHHhHHHhhhhhhhhhcc-c-cCH-HHHHHHHHhcCHHHHHH
Q 031998 1 MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDR-T-RKQ-EEISNCVEHCSVPVVRA 77 (149)
Q Consensus 1 ~~~~~~~~~~~~~~~~e~~~~rvq~av~~mv~~ld~~~lR~mQk~~f~Caa~Ccd~-~-~s~-e~V~~CVe~C~~pl~~a 77 (149)
||.+...+.+-+...+++. .+...++ +++.|-. .|=.+|.++ + .+. ..=+.||.+|-..--.+
T Consensus 3 m~~l~~~~~~el~~~~~e~--q~k~~~~-l~~~lte-----------~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~ 68 (89)
T 3dxr_A 3 MDALNSKEQQEFQKVVEQK--QMKDFMR-LYSNLVE-----------RCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKH 68 (89)
T ss_dssp -----------CCHHHHHH--HHHHHHH-HHHHHHH-----------HHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHH--HHHHHHH-HHHHHHH-----------HHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHH
Confidence 4555555655555555432 2222222 4433332 466778775 2 211 12248999999999999
Q ss_pred HHHHHHHHHHHH
Q 031998 78 QQHFENEMAKFQ 89 (149)
Q Consensus 78 q~~vq~El~~FQ 89 (149)
...|-.-+.+++
T Consensus 69 ~~~v~~~~~~~~ 80 (89)
T 3dxr_A 69 SERVGQRFQEQN 80 (89)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999977666543
No 8
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=71.82 E-value=2.3 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.839 Sum_probs=19.5
Q ss_pred hhhhhhccc-cCHHHHHHHHHhcC
Q 031998 49 CAYECFDRT-RKQEEISNCVEHCS 71 (149)
Q Consensus 49 Caa~Ccd~~-~s~e~V~~CVe~C~ 71 (149)
|-.-|...+ .|.+-+.+|..+|.
T Consensus 2 ckvmcyaqrhsspellrrcldnce 25 (26)
T 2plx_B 2 CKVMCYAQRHSSPELLRRCLDNCE 25 (26)
T ss_dssp HHHHHHHBCCCCHHHHHHHHHHHT
T ss_pred ceEEeehhhcCCHHHHHHHHhccc
Confidence 556677777 99999999999995
No 9
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=58.59 E-value=4.6 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.769 Sum_probs=18.6
Q ss_pred hhhhhhhccc-cCHHHHHHHHHhcCH
Q 031998 48 KCAYECFDRT-RKQEEISNCVEHCSV 72 (149)
Q Consensus 48 ~Caa~Ccd~~-~s~e~V~~CVe~C~~ 72 (149)
.|-.-|...+ .|.+-+.+|+.+|..
T Consensus 6 qckvmcyaqrhsspellrrcldncek 31 (34)
T 2cmy_B 6 QCKVMCYAQRHSSPELLRRCLDNCEK 31 (34)
T ss_dssp -CHHHHHHBC--CCHHHHHHHHHC--
T ss_pred HhhHHHHHhhcCCHHHHHHHHHhhhh
Confidence 4667788888 999999999999964
No 10
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.29 E-value=28 Score=18.68 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 031998 81 FENEMAKFQERLNR 94 (149)
Q Consensus 81 vq~El~~FQ~RLqR 94 (149)
+-.||+.+|+||..
T Consensus 6 lykeledlqerlrk 19 (27)
T 3twe_A 6 LYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44799999999954
No 11
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=23.36 E-value=15 Score=22.67 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=13.9
Q ss_pred CchhhhhHHHHHHHHHH
Q 031998 1 MNHVAGMEEQIVSERMR 17 (149)
Q Consensus 1 ~~~~~~~~~~~~~~~~e 17 (149)
+||+|+.|.+-+++|.+
T Consensus 10 k~HLAAye~ska~~~s~ 26 (48)
T 2kxc_B 10 MQHLAEHGIQPARNMAE 26 (48)
T ss_pred HHHHHHHhhccchhhhc
Confidence 48999999888877765
No 12
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=23.31 E-value=1.2e+02 Score=20.28 Aligned_cols=42 Identities=24% Similarity=0.540 Sum_probs=29.5
Q ss_pred hhhhhhhhcc-c---cCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 031998 47 FKCAYECFDR-T---RKQEEISNCVEHCSVPVVRAQQHFENEMAKFQ 89 (149)
Q Consensus 47 f~Caa~Ccd~-~---~s~e~V~~CVe~C~~pl~~aq~~vq~El~~FQ 89 (149)
-.|=.+|.++ + .+. .=+.||.+|-..--.+...|-.-+...+
T Consensus 26 e~Cf~KCv~~~~~~~L~~-~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~ 71 (89)
T 2bsk_A 26 ETCFLDCVKDFTTREVKP-EETTCSEHCLQKYLKMTQRISMRFQEYH 71 (89)
T ss_dssp HHHHHHHCCCCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCcCCc-hHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677765 2 222 2348999999999999999977666654
No 13
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=22.79 E-value=42 Score=17.80 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhchhhhh
Q 031998 17 RRKLEEVNAAAQAHLAPVQDH 37 (149)
Q Consensus 17 e~~~~rvq~av~~mv~~ld~~ 37 (149)
-++.++|.+|+.+.++.||+.
T Consensus 5 yekakevssalskvlskiddt 25 (26)
T 2ibf_B 5 YEKAKEVSSALSKVLSKIDDT 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 467788999999999988764
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.69 E-value=1.1e+02 Score=17.09 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhh
Q 031998 15 RMRRKLEEVNAAAQAHLAPVQD 36 (149)
Q Consensus 15 ~~e~~~~rvq~av~~mv~~ld~ 36 (149)
++|+....++.-|+++.+.+||
T Consensus 3 rlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777666665555
No 15
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=20.18 E-value=72 Score=16.87 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 031998 82 ENEMAKFQERLNRS 95 (149)
Q Consensus 82 q~El~~FQ~RLqRC 95 (149)
-.||+..|+||..-
T Consensus 7 ykeled~qerlrk~ 20 (26)
T 4g3b_A 7 YKELEDXQERLRKX 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999999653
Done!