Query 031999
Match_columns 149
No_of_seqs 112 out of 1131
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.7E-31 3.8E-36 172.1 17.7 146 2-148 11-156 (160)
2 KOG0027 Calmodulin and related 100.0 5.9E-29 1.3E-33 162.3 17.3 144 5-148 2-149 (151)
3 PTZ00184 calmodulin; Provision 100.0 5.7E-28 1.2E-32 156.9 18.1 149 1-149 1-149 (149)
4 PTZ00183 centrin; Provisional 100.0 3E-26 6.4E-31 150.4 18.1 145 3-147 9-153 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 2.1E-24 4.5E-29 136.9 15.6 144 4-147 26-169 (172)
6 KOG0031 Myosin regulatory ligh 99.9 2.3E-21 5E-26 122.3 16.3 140 4-147 25-164 (171)
7 KOG0034 Ca2+/calmodulin-depend 99.9 6.9E-21 1.5E-25 126.8 16.0 140 4-147 26-174 (187)
8 KOG0030 Myosin essential light 99.9 4.3E-21 9.4E-26 119.1 12.8 144 4-148 4-151 (152)
9 KOG0037 Ca2+-binding protein, 99.9 1.9E-20 4.1E-25 124.7 15.3 131 10-147 56-187 (221)
10 KOG0036 Predicted mitochondria 99.8 4E-19 8.7E-24 128.0 15.4 138 4-147 7-145 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5.7E-19 1.2E-23 117.8 14.9 141 4-147 22-174 (193)
12 KOG4223 Reticulocalbin, calume 99.6 1.6E-15 3.4E-20 106.7 9.5 137 8-144 160-301 (325)
13 KOG4223 Reticulocalbin, calume 99.6 3.7E-15 8E-20 104.8 9.5 139 10-148 76-228 (325)
14 PLN02964 phosphatidylserine de 99.6 3.4E-14 7.5E-19 109.8 14.0 104 4-112 136-243 (644)
15 PF13499 EF-hand_7: EF-hand do 99.6 7.3E-15 1.6E-19 82.7 7.5 62 85-146 1-66 (66)
16 cd05022 S-100A13 S-100A13: S-1 99.6 8.6E-15 1.9E-19 86.7 6.8 64 84-147 8-74 (89)
17 KOG0377 Protein serine/threoni 99.6 1.2E-13 2.6E-18 101.0 12.4 134 11-146 464-613 (631)
18 cd05027 S-100B S-100B: S-100B 99.5 2.4E-13 5.1E-18 80.6 7.7 64 84-147 8-78 (88)
19 KOG0044 Ca2+ sensor (EF-Hand s 99.5 4.5E-12 9.8E-17 84.8 13.3 120 26-147 7-127 (193)
20 KOG0027 Calmodulin and related 99.5 1.9E-12 4.1E-17 84.4 11.3 100 47-147 8-112 (151)
21 KOG0038 Ca2+-binding kinase in 99.5 2.3E-12 5.1E-17 81.2 10.7 108 37-147 64-176 (189)
22 PTZ00183 centrin; Provisional 99.4 6.5E-12 1.4E-16 82.1 12.5 100 47-147 17-117 (158)
23 KOG0037 Ca2+-binding protein, 99.4 1.9E-12 4.1E-17 86.8 9.8 83 11-100 124-206 (221)
24 cd05029 S-100A6 S-100A6: S-100 99.4 1.1E-12 2.5E-17 77.7 7.5 64 84-147 10-78 (88)
25 PF13499 EF-hand_7: EF-hand do 99.4 2E-12 4.3E-17 72.7 7.7 61 12-72 1-65 (66)
26 PTZ00184 calmodulin; Provision 99.4 1.3E-11 2.8E-16 79.8 12.2 99 48-147 12-111 (149)
27 KOG0040 Ca2+-binding actin-bun 99.4 1.4E-11 3E-16 100.6 13.9 135 5-147 2247-2397(2399)
28 cd05026 S-100Z S-100Z: S-100Z 99.4 2.8E-12 6E-17 76.9 7.6 64 84-147 10-80 (93)
29 PF13833 EF-hand_8: EF-hand do 99.4 2.1E-12 4.6E-17 69.7 6.5 52 97-148 1-53 (54)
30 cd05025 S-100A1 S-100A1: S-100 99.4 3.7E-12 8E-17 76.3 7.8 65 83-147 8-79 (92)
31 cd05031 S-100A10_like S-100A10 99.4 3.1E-12 6.7E-17 76.9 7.4 64 84-147 8-78 (94)
32 cd05022 S-100A13 S-100A13: S-1 99.4 5.5E-12 1.2E-16 74.7 8.2 70 7-76 4-76 (89)
33 COG5126 FRQ1 Ca2+-binding prot 99.4 2.7E-11 5.9E-16 78.6 12.0 98 48-147 21-119 (160)
34 cd00052 EH Eps15 homology doma 99.3 9.2E-12 2E-16 70.0 7.0 59 87-147 2-60 (67)
35 smart00027 EH Eps15 homology d 99.3 2.9E-11 6.3E-16 73.0 9.5 70 4-75 3-72 (96)
36 cd05027 S-100B S-100B: S-100B 99.3 3.3E-11 7.2E-16 71.4 9.1 69 7-75 4-79 (88)
37 cd05023 S-100A11 S-100A11: S-1 99.3 2.1E-11 4.6E-16 72.4 7.7 64 84-147 9-79 (89)
38 cd00213 S-100 S-100: S-100 dom 99.3 1.7E-11 3.7E-16 72.8 7.2 65 83-147 7-78 (88)
39 smart00027 EH Eps15 homology d 99.3 2.4E-11 5.1E-16 73.4 7.8 63 83-147 9-71 (96)
40 cd00051 EFh EF-hand, calcium b 99.3 5.3E-11 1.1E-15 65.3 7.8 61 86-146 2-62 (63)
41 cd00252 SPARC_EC SPARC_EC; ext 99.3 3.4E-11 7.3E-16 74.7 7.4 61 83-147 47-107 (116)
42 cd05029 S-100A6 S-100A6: S-100 99.2 1.9E-10 4E-15 68.2 9.1 70 7-76 6-80 (88)
43 cd00213 S-100 S-100: S-100 dom 99.2 1.5E-10 3.3E-15 68.7 8.1 70 7-76 4-80 (88)
44 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.7E-15 68.2 9.1 69 8-76 6-81 (92)
45 PLN02964 phosphatidylserine de 99.2 3.4E-10 7.5E-15 88.0 11.7 97 47-148 143-243 (644)
46 cd05026 S-100Z S-100Z: S-100Z 99.2 3.1E-10 6.6E-15 68.1 9.1 70 7-76 6-82 (93)
47 cd05031 S-100A10_like S-100A10 99.2 3.5E-10 7.5E-15 68.0 8.7 67 8-74 5-78 (94)
48 cd00052 EH Eps15 homology doma 99.2 2.3E-10 5E-15 64.3 7.2 60 14-75 2-61 (67)
49 KOG0028 Ca2+-binding protein ( 99.2 1.3E-09 2.8E-14 69.9 11.1 99 47-146 33-132 (172)
50 cd05030 calgranulins Calgranul 99.1 3.2E-10 6.8E-15 67.3 6.7 65 84-148 8-79 (88)
51 KOG0034 Ca2+/calmodulin-depend 99.1 2.1E-09 4.5E-14 72.0 11.2 99 14-112 69-175 (187)
52 PF13833 EF-hand_8: EF-hand do 99.1 6.5E-10 1.4E-14 59.9 7.1 51 24-74 1-52 (54)
53 cd00051 EFh EF-hand, calcium b 99.1 1.2E-09 2.5E-14 59.8 7.5 61 13-73 2-62 (63)
54 PF14658 EF-hand_9: EF-hand do 99.1 1.2E-09 2.6E-14 60.3 6.6 59 89-147 3-63 (66)
55 cd05023 S-100A11 S-100A11: S-1 99.0 3.5E-09 7.5E-14 62.9 8.9 69 7-75 5-80 (89)
56 KOG0041 Predicted Ca2+-binding 99.0 5.3E-09 1.1E-13 69.5 9.2 110 4-113 92-204 (244)
57 PF14658 EF-hand_9: EF-hand do 99.0 5.9E-09 1.3E-13 57.6 6.8 60 15-74 2-63 (66)
58 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.1E-08 2.4E-13 63.5 7.9 62 44-110 45-106 (116)
59 KOG2643 Ca2+ binding protein, 98.8 5.4E-08 1.2E-12 71.7 10.4 129 13-147 320-452 (489)
60 cd05030 calgranulins Calgranul 98.8 3.5E-08 7.6E-13 58.5 7.6 70 7-76 4-80 (88)
61 cd05024 S-100A10 S-100A10: A s 98.8 7.3E-08 1.6E-12 56.9 7.9 63 84-147 8-75 (91)
62 KOG0036 Predicted mitochondria 98.8 2.1E-07 4.6E-12 68.2 11.0 98 45-147 12-109 (463)
63 PF00036 EF-hand_1: EF hand; 98.7 1.7E-08 3.7E-13 47.0 3.6 27 86-112 2-28 (29)
64 KOG2562 Protein phosphatase 2 98.7 9.8E-08 2.1E-12 70.8 9.0 130 12-145 279-421 (493)
65 KOG0041 Predicted Ca2+-binding 98.7 8.1E-08 1.8E-12 64.0 7.1 63 84-146 99-161 (244)
66 KOG4251 Calcium binding protei 98.7 4.4E-08 9.5E-13 67.3 5.3 137 10-146 100-262 (362)
67 KOG2643 Ca2+ binding protein, 98.7 3.9E-07 8.4E-12 67.3 10.1 128 12-145 234-381 (489)
68 KOG0751 Mitochondrial aspartat 98.7 1.7E-07 3.6E-12 70.2 8.2 123 12-142 109-238 (694)
69 PF13405 EF-hand_6: EF-hand do 98.6 7E-08 1.5E-12 45.8 3.6 30 85-114 1-31 (31)
70 cd05024 S-100A10 S-100A10: A s 98.6 1E-06 2.2E-11 52.1 8.8 68 8-76 5-77 (91)
71 PF12763 EF-hand_4: Cytoskelet 98.5 5.6E-07 1.2E-11 54.8 7.0 67 4-73 3-69 (104)
72 PF12763 EF-hand_4: Cytoskelet 98.5 8.6E-07 1.9E-11 54.0 7.8 62 82-146 8-69 (104)
73 PF00036 EF-hand_1: EF hand; 98.5 2.8E-07 6E-12 42.9 3.9 27 13-39 2-28 (29)
74 KOG0031 Myosin regulatory ligh 98.5 9.3E-07 2E-11 56.6 7.5 44 84-127 32-75 (171)
75 PRK12309 transaldolase/EF-hand 98.5 7.9E-07 1.7E-11 66.1 7.6 54 81-147 331-384 (391)
76 PF13405 EF-hand_6: EF-hand do 98.4 7.1E-07 1.5E-11 42.2 4.0 30 12-41 1-31 (31)
77 KOG0751 Mitochondrial aspartat 98.4 1.4E-05 3E-10 60.3 12.2 105 7-114 32-138 (694)
78 KOG4666 Predicted phosphate ac 98.4 6.1E-07 1.3E-11 64.0 5.0 100 47-147 259-358 (412)
79 PF10591 SPARC_Ca_bdg: Secrete 98.3 2E-07 4.4E-12 57.7 1.6 62 82-145 52-113 (113)
80 KOG4251 Calcium binding protei 98.3 1.4E-06 3.1E-11 60.1 5.8 118 28-145 216-342 (362)
81 PF13202 EF-hand_5: EF hand; P 98.3 1E-06 2.2E-11 39.5 3.0 23 87-109 2-24 (25)
82 KOG0040 Ca2+-binding actin-bun 98.3 2E-06 4.3E-11 71.7 6.5 64 86-149 2255-2325(2399)
83 KOG0030 Myosin essential light 98.3 2.7E-05 6E-10 49.2 10.0 101 46-147 10-115 (152)
84 PF14788 EF-hand_10: EF hand; 98.2 6.1E-06 1.3E-10 43.1 5.5 46 101-146 2-47 (51)
85 KOG0169 Phosphoinositide-speci 98.2 6.6E-05 1.4E-09 59.2 13.0 139 6-149 131-275 (746)
86 PRK12309 transaldolase/EF-hand 98.2 1.1E-05 2.3E-10 60.2 8.1 59 41-113 328-386 (391)
87 KOG1029 Endocytic adaptor prot 98.2 6.5E-05 1.4E-09 59.5 12.4 60 85-146 196-255 (1118)
88 KOG0377 Protein serine/threoni 98.2 1.1E-05 2.3E-10 60.1 7.5 64 48-111 548-614 (631)
89 PF13202 EF-hand_5: EF hand; P 98.2 4.2E-06 9.2E-11 37.5 3.4 24 13-36 1-24 (25)
90 KOG2562 Protein phosphatase 2 98.1 3.8E-05 8.3E-10 57.4 10.0 136 10-148 173-343 (493)
91 KOG0038 Ca2+-binding kinase in 98.0 5.4E-05 1.2E-09 48.3 7.8 100 14-113 74-178 (189)
92 PF09279 EF-hand_like: Phospho 97.9 4.9E-05 1.1E-09 44.4 6.2 63 86-149 2-70 (83)
93 KOG0046 Ca2+-binding actin-bun 97.9 7.2E-05 1.6E-09 56.8 8.2 73 2-75 10-85 (627)
94 KOG1707 Predicted Ras related/ 97.9 0.00027 5.9E-09 54.6 10.3 141 2-146 186-375 (625)
95 PF14788 EF-hand_10: EF hand; 97.8 0.00015 3.3E-09 38.0 6.1 46 28-73 2-47 (51)
96 KOG0046 Ca2+-binding actin-bun 97.8 8.5E-05 1.8E-09 56.5 7.0 62 85-147 20-84 (627)
97 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.3E-05 2.8E-10 49.7 1.0 64 42-108 49-112 (113)
98 KOG0035 Ca2+-binding actin-bun 97.6 0.00099 2.1E-08 54.0 10.8 103 5-108 741-848 (890)
99 KOG4065 Uncharacterized conser 97.6 0.00021 4.6E-09 43.8 5.4 59 87-145 70-142 (144)
100 smart00054 EFh EF-hand, calciu 97.4 0.00031 6.7E-09 31.4 3.3 26 86-111 2-27 (29)
101 smart00054 EFh EF-hand, calciu 97.2 0.00067 1.5E-08 30.2 3.1 26 13-38 2-27 (29)
102 KOG4666 Predicted phosphate ac 96.9 0.0051 1.1E-07 44.5 6.6 102 10-113 258-360 (412)
103 PF09279 EF-hand_like: Phospho 96.9 0.0067 1.4E-07 35.2 6.0 63 12-75 1-69 (83)
104 PLN02952 phosphoinositide phos 96.8 0.024 5.2E-07 44.8 10.2 88 60-148 13-110 (599)
105 PF08726 EFhand_Ca_insen: Ca2+ 96.7 0.0007 1.5E-08 38.0 0.8 58 82-147 4-68 (69)
106 KOG4065 Uncharacterized conser 96.6 0.012 2.7E-07 36.2 6.0 66 4-71 62-141 (144)
107 KOG1955 Ral-GTPase effector RA 96.6 0.0099 2.1E-07 45.4 6.5 68 4-73 224-291 (737)
108 KOG4578 Uncharacterized conser 96.5 0.0019 4.1E-08 46.7 2.2 61 85-147 334-397 (421)
109 PF05042 Caleosin: Caleosin re 96.4 0.092 2E-06 34.8 9.6 136 10-145 6-163 (174)
110 KOG4578 Uncharacterized conser 96.4 0.0029 6.3E-08 45.8 2.5 64 49-112 335-398 (421)
111 KOG3555 Ca2+-binding proteogly 96.3 0.0069 1.5E-07 44.2 4.3 59 84-146 250-308 (434)
112 KOG0169 Phosphoinositide-speci 96.3 0.046 1E-06 43.9 9.1 98 44-146 133-230 (746)
113 KOG0042 Glycerol-3-phosphate d 96.3 0.022 4.7E-07 44.4 7.0 76 4-79 586-661 (680)
114 KOG3555 Ca2+-binding proteogly 96.2 0.01 2.2E-07 43.4 4.4 99 11-114 211-312 (434)
115 KOG1029 Endocytic adaptor prot 96.2 0.0091 2E-07 47.9 4.5 62 10-73 194-255 (1118)
116 KOG0998 Synaptic vesicle prote 96.1 0.0074 1.6E-07 49.7 3.7 137 5-146 123-343 (847)
117 KOG1265 Phospholipase C [Lipid 95.8 0.36 7.8E-06 39.9 11.8 120 22-148 159-299 (1189)
118 KOG4347 GTPase-activating prot 95.8 0.019 4.2E-07 45.2 4.8 76 64-140 535-610 (671)
119 PF05517 p25-alpha: p25-alpha 95.7 0.1 2.2E-06 34.2 7.4 60 88-147 6-68 (154)
120 KOG0042 Glycerol-3-phosphate d 95.7 0.028 6.1E-07 43.8 5.1 63 86-148 595-657 (680)
121 PF05042 Caleosin: Caleosin re 95.1 0.16 3.4E-06 33.7 6.6 32 117-148 93-124 (174)
122 KOG3866 DNA-binding protein of 94.9 0.051 1.1E-06 39.3 4.2 59 88-146 248-322 (442)
123 KOG1955 Ral-GTPase effector RA 94.6 0.12 2.7E-06 39.8 5.7 61 84-146 231-291 (737)
124 PF14513 DAG_kinase_N: Diacylg 94.6 0.11 2.3E-06 33.4 4.7 70 25-96 5-81 (138)
125 KOG4347 GTPase-activating prot 94.1 0.084 1.8E-06 41.7 4.1 57 48-106 556-612 (671)
126 KOG2243 Ca2+ release channel ( 94.0 0.12 2.6E-06 44.7 5.1 57 89-146 4062-4118(5019)
127 KOG0035 Ca2+-binding actin-bun 94.0 0.21 4.5E-06 41.2 6.3 64 84-147 747-815 (890)
128 PF05517 p25-alpha: p25-alpha 93.8 0.91 2E-05 29.7 8.0 62 14-75 5-69 (154)
129 PF11116 DUF2624: Protein of u 93.6 0.51 1.1E-05 27.6 5.7 42 99-140 13-54 (85)
130 KOG1707 Predicted Ras related/ 93.5 0.27 5.8E-06 38.7 5.8 69 3-74 307-376 (625)
131 KOG2243 Ca2+ release channel ( 93.3 0.19 4.2E-06 43.6 5.0 56 16-72 4062-4117(5019)
132 PLN02952 phosphoinositide phos 92.6 2.5 5.3E-05 33.9 10.1 87 24-111 13-109 (599)
133 PF09069 EF-hand_3: EF-hand; 92.3 1.5 3.2E-05 26.0 7.8 62 84-148 3-75 (90)
134 PLN02228 Phosphoinositide phos 91.6 1.4 3.1E-05 35.0 7.8 28 45-74 22-49 (567)
135 PF09069 EF-hand_3: EF-hand; 91.6 1.8 3.9E-05 25.6 7.7 62 10-74 2-74 (90)
136 KOG3866 DNA-binding protein of 91.0 0.27 6E-06 35.7 3.1 62 15-76 248-325 (442)
137 PLN02222 phosphoinositide phos 90.9 1.5 3.3E-05 35.0 7.3 63 84-148 25-90 (581)
138 KOG1264 Phospholipase C [Lipid 90.8 3.7 8E-05 34.2 9.3 145 5-149 137-294 (1267)
139 PLN02230 phosphoinositide phos 90.4 2.2 4.8E-05 34.2 7.8 66 82-148 27-102 (598)
140 PF02761 Cbl_N2: CBL proto-onc 87.6 2.9 6.2E-05 24.5 5.1 68 45-114 5-72 (85)
141 cd07313 terB_like_2 tellurium 87.2 3.8 8.2E-05 24.5 5.9 83 24-108 12-96 (104)
142 PRK09430 djlA Dna-J like membr 86.9 9.5 0.00021 27.4 9.6 99 23-128 67-174 (267)
143 PLN02223 phosphoinositide phos 86.4 4.8 0.0001 31.8 7.2 66 82-148 14-92 (537)
144 PF13331 DUF4093: Domain of un 86.2 5 0.00011 23.6 6.5 57 63-126 30-86 (87)
145 KOG0039 Ferric reductase, NADH 85.6 2.9 6.2E-05 34.0 5.9 76 64-146 4-87 (646)
146 KOG4004 Matricellular protein 83.8 0.45 9.8E-06 32.4 0.6 54 90-146 193-248 (259)
147 PF08414 NADPH_Ox: Respiratory 83.8 5 0.00011 24.2 4.9 63 45-113 28-93 (100)
148 KOG2871 Uncharacterized conser 82.5 2.1 4.6E-05 32.0 3.6 57 82-138 307-364 (449)
149 KOG0998 Synaptic vesicle prote 81.8 0.84 1.8E-05 38.1 1.6 67 5-73 277-343 (847)
150 PF12174 RST: RCD1-SRO-TAF4 (R 80.8 7.9 0.00017 21.8 4.8 47 63-113 8-54 (70)
151 PF08414 NADPH_Ox: Respiratory 80.6 10 0.00022 22.9 5.4 62 11-77 30-94 (100)
152 COG4103 Uncharacterized protei 80.6 13 0.00028 24.1 9.0 102 7-112 26-129 (148)
153 PF05099 TerB: Tellurite resis 80.0 1.1 2.4E-05 28.4 1.4 80 24-105 36-117 (140)
154 PF12174 RST: RCD1-SRO-TAF4 (R 79.0 2.2 4.7E-05 24.0 2.2 38 110-147 15-52 (70)
155 PF08726 EFhand_Ca_insen: Ca2+ 77.9 3.9 8.5E-05 22.9 3.0 27 11-38 6-32 (69)
156 PF00404 Dockerin_1: Dockerin 77.7 3.3 7.2E-05 17.4 2.0 15 21-35 1-15 (21)
157 PF07879 PHB_acc_N: PHB/PHA ac 77.2 5.4 0.00012 22.0 3.3 22 91-112 10-31 (64)
158 KOG2871 Uncharacterized conser 76.8 2.6 5.5E-05 31.7 2.6 63 11-73 309-372 (449)
159 KOG4403 Cell surface glycoprot 76.7 16 0.00035 28.1 6.7 101 23-127 40-146 (575)
160 PF12419 DUF3670: SNF2 Helicas 75.4 8.6 0.00019 24.7 4.5 51 97-147 80-140 (141)
161 cd07313 terB_like_2 tellurium 75.2 5.9 0.00013 23.6 3.6 79 60-141 12-93 (104)
162 TIGR01848 PHA_reg_PhaR polyhyd 74.3 12 0.00025 22.9 4.5 69 55-134 11-83 (107)
163 PLN02228 Phosphoinositide phos 72.9 35 0.00077 27.5 8.0 61 11-73 24-90 (567)
164 PF08976 DUF1880: Domain of un 72.8 3.7 8.1E-05 25.5 2.2 30 44-73 4-33 (118)
165 PF09336 Vps4_C: Vps4 C termin 72.2 6.9 0.00015 21.4 3.0 25 100-124 29-53 (62)
166 PF14513 DAG_kinase_N: Diacylg 71.9 4 8.7E-05 26.3 2.3 48 98-147 5-59 (138)
167 PF09068 EF-hand_2: EF hand; 71.8 22 0.00049 22.4 8.6 28 86-113 99-126 (127)
168 cd07176 terB tellurite resista 69.1 13 0.00027 22.3 4.1 80 24-106 15-99 (111)
169 COG5069 SAC6 Ca2+-binding acti 68.5 40 0.00087 26.6 7.2 125 8-148 482-611 (612)
170 PTZ00373 60S Acidic ribosomal 67.6 27 0.00058 21.7 5.3 42 89-130 8-49 (112)
171 TIGR01639 P_fal_TIGR01639 Plas 67.5 15 0.00033 19.9 3.7 31 100-130 9-39 (61)
172 PF03979 Sigma70_r1_1: Sigma-7 67.3 6.5 0.00014 22.7 2.4 31 98-130 19-49 (82)
173 PF07308 DUF1456: Protein of u 66.8 20 0.00044 20.0 5.1 27 102-128 15-41 (68)
174 KOG3449 60S acidic ribosomal p 66.8 27 0.00059 21.5 5.1 44 88-131 5-48 (112)
175 PF01885 PTS_2-RNA: RNA 2'-pho 65.1 14 0.0003 25.0 3.9 37 94-130 26-62 (186)
176 PLN02222 phosphoinositide phos 63.0 58 0.0013 26.4 7.5 61 12-74 26-89 (581)
177 PF03672 UPF0154: Uncharacteri 63.0 23 0.00049 19.6 3.8 32 99-130 30-61 (64)
178 PHA02105 hypothetical protein 62.9 21 0.00045 19.2 3.5 46 101-146 5-55 (68)
179 COG3763 Uncharacterized protei 61.7 26 0.00056 19.7 3.9 33 25-57 36-68 (71)
180 PRK00819 RNA 2'-phosphotransfe 60.3 27 0.00059 23.5 4.6 35 95-129 28-62 (179)
181 PF08461 HTH_12: Ribonuclease 60.3 17 0.00037 20.0 3.1 37 97-133 10-46 (66)
182 TIGR02675 tape_meas_nterm tape 60.1 13 0.00027 21.1 2.6 13 61-73 28-40 (75)
183 PF07128 DUF1380: Protein of u 59.9 16 0.00035 23.5 3.3 32 101-132 27-58 (139)
184 PRK00523 hypothetical protein; 58.5 31 0.00067 19.5 3.9 32 25-56 37-68 (72)
185 PF03732 Retrotrans_gag: Retro 58.4 33 0.00071 19.5 4.9 31 63-93 26-56 (96)
186 PLN02230 phosphoinositide phos 58.1 78 0.0017 25.8 7.4 63 11-74 29-101 (598)
187 cd05833 Ribosomal_P2 Ribosomal 57.8 42 0.00092 20.6 5.3 41 90-130 7-47 (109)
188 TIGR03573 WbuX N-acetyl sugar 56.4 35 0.00076 25.4 5.1 44 97-146 299-342 (343)
189 COG2036 HHT1 Histones H3 and H 55.6 42 0.00091 20.0 6.3 31 86-116 57-87 (91)
190 PF09373 PMBR: Pseudomurein-bi 55.4 16 0.00034 17.1 2.1 16 98-113 2-17 (33)
191 KOG3449 60S acidic ribosomal p 55.0 48 0.001 20.4 6.3 53 14-71 4-56 (112)
192 COG1158 Rho Transcription term 54.8 30 0.00066 26.1 4.4 57 87-147 354-419 (422)
193 PF09107 SelB-wing_3: Elongati 54.7 30 0.00065 18.0 3.4 32 97-133 7-38 (50)
194 PF12631 GTPase_Cys_C: Catalyt 54.5 32 0.00069 19.3 3.7 46 85-130 24-73 (73)
195 PF11848 DUF3368: Domain of un 53.6 30 0.00065 17.6 3.4 32 97-128 14-46 (48)
196 PF01023 S_100: S-100/ICaBP ty 52.3 30 0.00066 17.3 4.5 31 9-39 4-36 (44)
197 KOG2301 Voltage-gated Ca2+ cha 51.7 11 0.00023 34.0 2.0 70 5-75 1411-1484(1592)
198 KOG4301 Beta-dystrobrevin [Cyt 48.4 78 0.0017 23.9 5.6 73 3-76 100-174 (434)
199 PRK01844 hypothetical protein; 47.9 51 0.0011 18.7 3.8 32 25-56 36-67 (72)
200 cd07316 terB_like_DjlA N-termi 47.8 58 0.0012 19.2 7.9 80 24-107 12-96 (106)
201 KOG4070 Putative signal transd 47.4 23 0.0005 23.2 2.5 25 90-114 63-87 (180)
202 COG1460 Uncharacterized protei 47.2 41 0.00088 20.9 3.5 29 101-129 80-108 (114)
203 KOG4004 Matricellular protein 47.0 13 0.00028 25.6 1.4 27 84-110 222-248 (259)
204 PF04876 Tenui_NCP: Tenuivirus 46.9 81 0.0018 20.7 6.6 22 57-78 93-114 (175)
205 PRK14981 DNA-directed RNA poly 46.5 45 0.00097 20.6 3.7 26 102-127 80-105 (112)
206 PF02037 SAP: SAP domain; Int 45.8 31 0.00068 16.2 2.3 18 100-117 3-20 (35)
207 cd04411 Ribosomal_P1_P2_L12p R 45.5 70 0.0015 19.5 7.1 30 101-130 17-46 (105)
208 KOG1954 Endocytosis/signaling 45.3 50 0.0011 25.4 4.3 27 44-70 474-500 (532)
209 PF07499 RuvA_C: RuvA, C-termi 44.6 43 0.00094 16.9 4.9 40 103-146 3-42 (47)
210 PF02761 Cbl_N2: CBL proto-onc 44.5 65 0.0014 18.9 6.8 44 99-142 21-64 (85)
211 PF04558 tRNA_synt_1c_R1: Glut 42.4 1E+02 0.0022 20.5 6.3 46 82-128 83-128 (164)
212 KOG1954 Endocytosis/signaling 42.0 42 0.0009 25.8 3.5 54 87-143 447-500 (532)
213 PF08044 DUF1707: Domain of un 42.0 46 0.001 17.5 2.8 31 97-127 20-50 (53)
214 PF07862 Nif11: Nitrogen fixat 41.7 36 0.00078 17.2 2.4 21 102-122 28-48 (49)
215 PF11020 DUF2610: Domain of un 40.3 52 0.0011 19.0 3.0 40 108-147 36-76 (82)
216 PF12995 DUF3879: Domain of un 40.2 1.1E+02 0.0024 20.4 5.6 55 29-98 3-57 (186)
217 PF02337 Gag_p10: Retroviral G 40.1 79 0.0017 18.8 3.9 9 132-140 69-77 (90)
218 PF09068 EF-hand_2: EF hand; 40.1 96 0.0021 19.6 6.6 63 85-147 42-124 (127)
219 KOG1265 Phospholipase C [Lipid 40.0 2.5E+02 0.0055 24.4 8.1 65 11-75 221-299 (1189)
220 smart00513 SAP Putative DNA-bi 40.0 43 0.00094 15.6 2.5 18 100-117 3-20 (35)
221 PHA02943 hypothetical protein; 39.7 1.1E+02 0.0024 20.2 10.4 110 1-133 1-122 (165)
222 TIGR03573 WbuX N-acetyl sugar 39.4 85 0.0019 23.4 4.9 65 33-110 276-342 (343)
223 TIGR03798 ocin_TIGR03798 bacte 39.1 64 0.0014 17.5 3.3 25 101-125 25-49 (64)
224 KOG2301 Voltage-gated Ca2+ cha 38.8 26 0.00057 31.8 2.4 65 82-146 1415-1482(1592)
225 TIGR00135 gatC glutamyl-tRNA(G 38.1 73 0.0016 18.7 3.6 23 102-124 2-24 (93)
226 PF02459 Adeno_terminal: Adeno 36.5 95 0.0021 24.9 4.8 47 86-132 457-503 (548)
227 cd06395 PB1_Map2k5 PB1 domain 36.3 62 0.0013 18.8 2.9 45 62-111 21-67 (91)
228 PF13623 SurA_N_2: SurA N-term 36.2 1.2E+02 0.0026 19.6 8.0 44 102-145 91-144 (145)
229 PF10437 Lip_prot_lig_C: Bacte 36.0 87 0.0019 17.9 4.1 41 103-145 44-85 (86)
230 PLN00138 large subunit ribosom 36.0 1.1E+02 0.0024 19.0 5.5 36 95-130 12-47 (113)
231 PF06384 ICAT: Beta-catenin-in 35.7 59 0.0013 18.7 2.7 21 105-125 21-41 (78)
232 PF14771 DUF4476: Domain of un 35.5 95 0.0021 18.2 8.6 46 28-74 5-50 (95)
233 PF11116 DUF2624: Protein of u 35.5 96 0.0021 18.2 7.6 32 27-58 14-45 (85)
234 PTZ00373 60S Acidic ribosomal 35.3 1.1E+02 0.0024 19.0 5.2 52 15-71 7-58 (112)
235 PF07492 Trehalase_Ca-bi: Neut 35.3 12 0.00025 17.2 -0.1 17 123-139 2-18 (30)
236 PF06648 DUF1160: Protein of u 35.1 1.2E+02 0.0026 19.2 5.1 13 101-113 68-80 (122)
237 KOG4629 Predicted mechanosensi 34.6 1.1E+02 0.0024 25.5 5.1 56 84-146 404-459 (714)
238 PF03986 Autophagy_N: Autophag 33.9 20 0.00043 23.3 0.7 15 97-111 24-38 (145)
239 PF13592 HTH_33: Winged helix- 33.8 79 0.0017 16.8 3.8 32 99-130 3-35 (60)
240 cd00076 H4 Histone H4, one of 33.8 1E+02 0.0022 18.0 7.9 47 66-117 36-82 (85)
241 cd07894 Adenylation_RNA_ligase 33.2 1.4E+02 0.0031 22.4 5.2 43 17-59 131-183 (342)
242 cd03035 ArsC_Yffb Arsenate Red 32.9 1.1E+02 0.0025 18.3 4.1 14 101-114 36-49 (105)
243 PRK00034 gatC aspartyl/glutamy 32.8 1E+02 0.0022 18.0 3.7 24 101-124 3-26 (95)
244 PF06014 DUF910: Bacterial pro 32.1 93 0.002 17.1 3.2 40 102-147 3-53 (62)
245 cd08819 CARD_MDA5_2 Caspase ac 31.9 1.1E+02 0.0025 18.0 5.2 47 98-147 31-77 (88)
246 PF13075 DUF3939: Protein of u 31.7 27 0.00058 22.5 1.1 13 101-113 10-22 (140)
247 cd07177 terB_like tellurium re 31.5 1.1E+02 0.0023 17.6 5.0 16 25-40 13-28 (104)
248 PF06207 DUF1002: Protein of u 31.2 1.3E+02 0.0028 21.2 4.4 45 102-146 173-221 (225)
249 PF12207 DUF3600: Domain of un 30.7 1.4E+02 0.0029 19.6 4.0 53 59-113 64-118 (162)
250 PF09851 SHOCT: Short C-termin 30.2 65 0.0014 14.7 3.5 26 8-39 3-28 (31)
251 TIGR02613 mob_myst_B mobile my 29.8 1.4E+02 0.003 20.1 4.3 19 23-41 127-145 (186)
252 COG5562 Phage envelope protein 29.4 41 0.00088 21.6 1.6 23 125-147 77-99 (137)
253 PRK10945 gene expression modul 29.3 1.1E+02 0.0025 17.2 3.4 29 81-113 19-47 (72)
254 cd08330 CARD_ASC_NALP1 Caspase 29.3 1.2E+02 0.0026 17.4 4.3 50 60-115 26-75 (82)
255 COG4359 Uncharacterized conser 29.1 2E+02 0.0043 19.9 5.6 96 23-129 9-110 (220)
256 PF12486 DUF3702: ImpA domain 29.1 1E+02 0.0022 20.1 3.4 27 10-36 68-94 (148)
257 PTZ00015 histone H4; Provision 29.1 1.4E+02 0.003 18.2 8.2 69 43-116 30-98 (102)
258 cd05833 Ribosomal_P2 Ribosomal 28.9 1.5E+02 0.0031 18.3 5.2 55 16-75 6-60 (109)
259 cd08324 CARD_NOD1_CARD4 Caspas 28.8 1.3E+02 0.0028 17.7 4.7 30 60-93 26-55 (85)
260 PF14164 YqzH: YqzH-like prote 28.4 1.1E+02 0.0024 16.9 3.4 28 86-113 10-38 (64)
261 PF09494 Slx4: Slx4 endonuclea 28.3 1.1E+02 0.0023 16.6 3.7 15 100-114 44-58 (64)
262 PF06226 DUF1007: Protein of u 28.2 57 0.0012 22.5 2.3 25 89-113 55-79 (212)
263 cd08332 CARD_CASP2 Caspase act 28.1 1.3E+02 0.0029 17.6 3.8 27 83-111 50-76 (90)
264 cd00086 homeodomain Homeodomai 28.1 93 0.002 15.8 5.4 37 85-128 14-50 (59)
265 KOG4286 Dystrophin-like protei 27.9 3.3E+02 0.0073 23.2 6.6 44 14-57 473-516 (966)
266 PF14713 DUF4464: Domain of un 27.3 1.3E+02 0.0029 21.3 3.9 25 83-108 31-56 (233)
267 cd08327 CARD_RAIDD Caspase act 27.2 1.4E+02 0.0031 17.7 4.2 10 137-146 67-76 (94)
268 COG1859 KptA RNA:NAD 2'-phosph 27.2 1.4E+02 0.003 20.8 3.9 36 95-130 54-89 (211)
269 TIGR01446 DnaD_dom DnaD and ph 26.7 98 0.0021 16.9 2.8 12 117-128 30-41 (73)
270 PRK13344 spxA transcriptional 26.4 1.8E+02 0.0038 18.4 4.8 14 101-114 37-50 (132)
271 PLN00035 histone H4; Provision 26.1 1.6E+02 0.0035 18.0 8.7 78 34-116 20-97 (103)
272 COG0721 GatC Asp-tRNAAsn/Glu-t 25.9 1.5E+02 0.0032 17.8 3.5 26 100-125 2-27 (96)
273 PF09066 B2-adapt-app_C: Beta2 25.8 57 0.0012 19.8 1.8 17 98-114 4-20 (114)
274 PF14848 HU-DNA_bdg: DNA-bindi 25.5 1.8E+02 0.0038 18.2 4.0 11 101-111 45-55 (124)
275 PHA02986 hypothetical protein; 25.5 1.9E+02 0.004 18.4 4.6 54 61-130 24-77 (141)
276 PF12949 HeH: HeH/LEM domain; 25.1 85 0.0018 15.0 1.9 17 100-116 3-19 (35)
277 KOG0506 Glutaminase (contains 25.0 2.5E+02 0.0054 22.5 5.2 60 88-147 90-157 (622)
278 PF02268 TFIIA_gamma_N: Transc 24.7 1.2E+02 0.0025 15.8 2.6 16 116-131 27-42 (49)
279 PTZ00315 2'-phosphotransferase 24.4 1.7E+02 0.0037 23.9 4.5 37 94-130 399-435 (582)
280 PF14069 SpoVIF: Stage VI spor 24.3 1.6E+02 0.0034 17.1 5.3 34 113-147 44-77 (79)
281 PF00046 Homeobox: Homeobox do 24.2 1.2E+02 0.0025 15.6 5.0 28 98-127 22-49 (57)
282 PF09156 Anthrax-tox_M: Anthra 23.9 2.4E+02 0.0052 19.1 5.3 17 123-139 91-107 (287)
283 PF01885 PTS_2-RNA: RNA 2'-pho 23.9 2.2E+02 0.0048 19.3 4.4 37 21-57 26-62 (186)
284 PF04022 Staphylcoagulse: Stap 23.4 37 0.0008 14.8 0.4 9 131-139 17-25 (27)
285 COG1059 Thermostable 8-oxoguan 23.4 2.6E+02 0.0056 19.3 5.6 26 89-115 60-85 (210)
286 KOG1168 Transcription factor A 23.2 2.7E+02 0.0058 20.6 4.8 126 5-134 214-351 (385)
287 COG5083 SMP2 Uncharacterized p 23.2 70 0.0015 25.1 2.1 38 96-133 381-419 (580)
288 PF09693 Phage_XkdX: Phage unc 23.1 62 0.0013 15.8 1.3 12 98-109 24-35 (40)
289 PRK10391 oriC-binding nucleoid 23.0 1.5E+02 0.0032 16.7 2.8 29 80-112 13-42 (71)
290 PF13551 HTH_29: Winged helix- 22.9 1.7E+02 0.0037 17.1 6.2 8 28-35 81-88 (112)
291 PF14932 HAUS-augmin3: HAUS au 22.5 3E+02 0.0064 19.7 5.5 23 90-113 33-55 (256)
292 PF02864 STAT_bind: STAT prote 22.5 2E+02 0.0044 20.7 4.2 46 100-145 178-232 (254)
293 PF04963 Sigma54_CBD: Sigma-54 22.5 1.7E+02 0.0037 19.8 3.8 17 126-142 76-92 (194)
294 KOG2116 Protein involved in pl 22.4 87 0.0019 25.8 2.5 38 96-133 536-574 (738)
295 PF02845 CUE: CUE domain; Int 22.3 1.1E+02 0.0024 14.8 4.0 25 108-132 6-30 (42)
296 PRK12559 transcriptional regul 22.1 2.2E+02 0.0047 18.0 4.0 13 101-113 37-49 (131)
297 PF10256 Erf4: Golgin subfamil 22.0 69 0.0015 19.6 1.7 17 98-114 27-43 (118)
298 TIGR03333 salvage_mtnX 2-hydro 21.9 1.2E+02 0.0026 20.6 3.0 16 59-74 5-20 (214)
299 PLN02223 phosphoinositide phos 21.7 4.4E+02 0.0096 21.4 6.8 63 11-74 16-91 (537)
300 KOG3355 Mitochondrial sulfhydr 21.5 1.5E+02 0.0033 19.9 3.2 48 64-114 98-145 (177)
301 PF15144 DUF4576: Domain of un 21.2 37 0.0008 19.5 0.3 32 25-56 38-69 (88)
302 PF05383 La: La domain; Inter 21.1 1.3E+02 0.0027 16.3 2.4 16 18-33 22-37 (61)
303 cd05831 Ribosomal_P1 Ribosomal 21.1 2.1E+02 0.0045 17.4 4.5 31 100-130 17-47 (103)
304 TIGR01309 L30P_arch 50S riboso 20.9 2.6E+02 0.0056 18.4 4.7 21 99-119 87-107 (152)
305 PF10891 DUF2719: Protein of u 20.9 76 0.0016 18.3 1.5 13 133-145 32-44 (81)
306 PF08672 APC2: Anaphase promot 20.9 1.6E+02 0.0034 15.9 3.7 30 82-112 13-44 (60)
307 PF07261 DnaB_2: Replication i 20.8 1.3E+02 0.0028 16.4 2.5 41 90-130 2-43 (77)
308 PRK06402 rpl12p 50S ribosomal 20.3 2.2E+02 0.0049 17.4 5.9 31 100-130 16-46 (106)
309 KOG1785 Tyrosine kinase negati 20.2 2.1E+02 0.0045 22.3 4.0 45 98-142 188-232 (563)
310 KOG0039 Ferric reductase, NADH 20.1 2.2E+02 0.0048 23.5 4.5 62 11-73 18-87 (646)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=172.08 Aligned_cols=146 Identities=57% Similarity=0.988 Sum_probs=140.3
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCC
Q 031999 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 81 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 81 (149)
..+++++++.+|++.|..+|++++|.|+..+|..+++.+|.+++..++..++..++. +++.|+|.+|+.++...+....
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 357899999999999999999999999999999999999999999999999999998 8999999999999999888888
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..+.++++|+.||.|++|+|+..+++.+++.+|..+++++++.++..+|.+++|.|+|++|++.++.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=5.9e-29 Score=162.31 Aligned_cols=144 Identities=68% Similarity=1.078 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCC---
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--- 81 (149)
++..+...++.+|..+|++++|+|+..++..+++.++.+|+..++..++..+|.+++|.|++++|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999998875544332
Q ss_pred -cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 82 -SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 82 -~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..+.++.+|+.||.+++|+||..||+.++..+|.+.+.+++..+++..|.++||.|+|.+|+++|..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2458999999999999999999999999999999999999999999999999999999999999865
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.96 E-value=5.7e-28 Score=156.93 Aligned_cols=149 Identities=93% Similarity=1.318 Sum_probs=137.8
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCC
Q 031999 1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT 80 (149)
Q Consensus 1 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 80 (149)
|+.++++++...+...|..+|++++|.|+..+|..++..++.++....+..++..+|.+++|.|+|++|+.++.......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 56789999999999999999999999999999999999999888889999999999999999999999999887655544
Q ss_pred CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhcC
Q 031999 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~~ 149 (149)
...+.+..+|..+|.+++|+|+++||..++..+++.++.+++..++..+|.+++|.|+|+||+.++..+
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 149 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhcC
Confidence 556788999999999999999999999999999988999999999999999999999999999998764
No 4
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=3e-26 Score=150.38 Aligned_cols=145 Identities=52% Similarity=0.863 Sum_probs=134.0
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCc
Q 031999 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (149)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 82 (149)
.+++++++.++..+|..+|++++|+|+..+|..+++.++..++...+..++..+|.+++|.|+|.+|+.++.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 46788999999999999999999999999999999999988899999999999999999999999999987655444456
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.+.++.+|+.+|.+++|+|+.+||..++...|.++++.++..++..+|.+++|.|+|++|+.++.
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999875
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.1e-24 Score=136.90 Aligned_cols=144 Identities=48% Similarity=0.806 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 83 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 83 (149)
.+++++-..+...|..+|++++|+|+..+|..+++++|+.+...++.+++..+|.++.|.|+|++|+..+...+...++.
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 45677778899999999999999999999999999999999999999999999999999999999999887777766788
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+..+|+.+|-|++|.|+..+|+.+.+.+|++++++++++++..+|.+++|.|+-+||...|.
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998874
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.89 E-value=2.3e-21 Score=122.33 Aligned_cols=140 Identities=40% Similarity=0.734 Sum_probs=132.2
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 83 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 83 (149)
.++..++.++...|..+|.|++|.|..++++..+..+|..++.+++..++.. ..|-|+|--|+.++...+.+.+++
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHH
Confidence 3567899999999999999999999999999999999999999999988865 467899999999999999999999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+..+|+.||.++.|.|..+.|+++|...|..++++++..+++.+-.+..|.++|.+|+.++.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.9e-21 Score=126.80 Aligned_cols=140 Identities=41% Similarity=0.729 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHhhhhcCC-CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhhcCCCC
Q 031999 4 QLTDDQISEFKEAFSLFDKD-GDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT-IDFPEFLNLMARKMKDTD 81 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~ 81 (149)
+++..++..+...|..+|.+ +.|.++.++|..+. .+..+| ....++..++.+++|. |++++|+..+..+.....
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 47889999999999999999 99999999999987 333344 4667778888888887 999999999988888777
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHh-CCCCC--HHH----HHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLT--DEE----VDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~-~~~l~--~~~----~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++++-+|+.||.+++|+|+++|+.+++..+ +...+ ++. ++.++..+|.++||+||++||++.+.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 77899999999999999999999999999886 33344 433 45678899999999999999999874
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=4.3e-21 Score=119.15 Aligned_cols=144 Identities=49% Similarity=0.803 Sum_probs=126.7
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhhcCCC-
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDAD--GNGTIDFPEFLNLMARKMKDT- 80 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~- 80 (149)
..++++..+++.+|..+|..++|+|+..+...+|+.+|.+|+..++.+......++ +--.++|++|+.++....++.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999999999999999999999999888766 346899999999887655443
Q ss_pred -CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 81 -DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 81 -~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..-+.+...++.||+.++|.|...||+.+|..+|.+++++++..++.... +.+|.|.|+.|++.+++
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 34477888999999999999999999999999999999999999987654 45689999999998875
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-20 Score=124.74 Aligned_cols=131 Identities=29% Similarity=0.501 Sum_probs=119.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHH
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKE 88 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 88 (149)
...+...|...|++++|+|+.+|+..+|.+.+.. .+.+.+..++..+|.++.|.|+++||..+|... ...+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 4578899999999999999999999999987665 466678889999999999999999999998643 56889
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+|+.||.|++|+|+..||+++|..+|..++++-.+.|++++|..+.|.|.+++|+++.+
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999874
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.83 E-value=4e-19 Score=127.96 Aligned_cols=138 Identities=23% Similarity=0.455 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCc
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 82 (149)
+.+++...+++.+|+.+|.+++|.++..++...+..+..+ ++......+++.+|.|.+|.|+|.+|..++.. .
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence 4567777889999999999999999999999999888665 77888899999999999999999999998853 3
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+..+..+|...|.+.+|.|..+|+.+.|+.+|.++++++++++++++|.++++.|+++||.+.++
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999987654
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=5.7e-19 Score=117.79 Aligned_cols=141 Identities=26% Similarity=0.479 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCc
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 82 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 82 (149)
+.++.++..|.+-|.. .-.+|.++.++|+.++..+.. .-+......+++.+|.+++|.|+|.||+..+...+++. .
T Consensus 22 ~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-~ 98 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-L 98 (193)
T ss_pred CCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-H
Confidence 4566677666666665 235899999999999998754 44555678899999999999999999999987766654 6
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNL----GE-------KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~----~~-------~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.+.++.+|+.||.|++|+||++|+..++..+ +. ....+.+..+|+.+|.|+||.||++||+....
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 7889999999999999999999999988764 21 11346688899999999999999999998653
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.6e-15 Score=106.69 Aligned_cols=137 Identities=23% Similarity=0.426 Sum_probs=111.2
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCc----
Q 031999 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS---- 82 (149)
Q Consensus 8 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~---- 82 (149)
..+....+.|+..|.|++|.++.+||..+|..--.+ .....+..-+.-.|.|++|.|+++||+.=+....+....
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 455677889999999999999999999998653322 233346777888999999999999999876655432211
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHH
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 144 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~ 144 (149)
...-.+++...|+|++|+++.+|++.++..-+......++..|+...|.|+||++|++|-+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 12345788899999999999999999998877778889999999999999999999999764
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.7e-15 Score=104.84 Aligned_cols=139 Identities=24% Similarity=0.390 Sum_probs=111.3
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcC------C-CCc
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK------D-TDS 82 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~------~-~~~ 82 (149)
-.++..++..+|.+++|.|+..++..++..........+....+..+|.+.+|.|+|++++........ . ...
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 356899999999999999999999998876654555566777888999999999999999987653210 0 011
Q ss_pred H------HHHHHHhhhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 83 E------EELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 83 ~------~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
. .+-+.-|+..|.|++|.+|++||..++..-- +.+.+-.+...+..+|.|+||.|+++||+.-|.+
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 1 1224569999999999999999999987643 4577788899999999999999999999987753
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.60 E-value=3.4e-14 Score=109.84 Aligned_cols=104 Identities=22% Similarity=0.446 Sum_probs=92.9
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHH---HHHHHHHhcCCCCCcccHHHHHHHHHhhcCC
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAE---LQDMINEVDADGNGTIDFPEFLNLMARKMKD 79 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 79 (149)
.++.+++.++.+.|..+|++++|.+ +..+++.++ ..++..+ +..++..+|.+++|.|+++||+.++.. +..
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGN 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hcc
Confidence 5678899999999999999999986 888889999 5888877 789999999999999999999998864 444
Q ss_pred CCcHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 031999 80 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~ 112 (149)
....+.++.+|..||.|++|+|+.+||++++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 556788999999999999999999999999988
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.60 E-value=7.3e-15 Score=82.73 Aligned_cols=62 Identities=50% Similarity=0.952 Sum_probs=54.6
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCH----HHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD----EEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~----~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
+++.+|..+|.+++|+|+.+||..++..++...++ ..++.++..+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999999876655 445556999999999999999999875
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.58 E-value=8.6e-15 Score=86.71 Aligned_cols=64 Identities=27% Similarity=0.468 Sum_probs=59.9
Q ss_pred HHHHHHhhhhcc-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDK-DQNGFISAAELRHVMTN-LGEKLTD-EEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~~g~it~~e~~~~~~~-~~~~l~~-~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++.+|..||. +++|+|+..||+.+++. +|..+++ .+++.+++.+|.|+||.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 468899999999 99999999999999999 8877888 9999999999999999999999999874
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.56 E-value=1.2e-13 Score=100.98 Aligned_cols=134 Identities=22% Similarity=0.465 Sum_probs=105.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcC--C--CC----
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK--D--TD---- 81 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--~--~~---- 81 (149)
..+...|+.+|+..+|+|+...|..++.++ +.++++.-+.. .......+|.|.|.+.+..+..-.. . ..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 457888999999999999999999999875 67777655543 2233456789999988876532110 0 00
Q ss_pred ---cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC----CCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 82 ---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG----EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 82 ---~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~----~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
....+..+|..+|.|++|.||.+||+++|+-++ .++++.++.++.+.+|.|+||.|+++||+.++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 112356789999999999999999999997653 46899999999999999999999999999876
No 18
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=2.4e-13 Score=80.61 Aligned_cols=64 Identities=27% Similarity=0.552 Sum_probs=59.2
Q ss_pred HHHHHHhhhhc-cCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFD-KDQNG-FISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~it~~e~~~~~~~-----~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++.+|..|| .+|+| +|+.+||+.+++. +|...+++++..+++.+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 46889999998 89999 5999999999999 88888999999999999999999999999998874
No 19
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=4.5e-12 Score=84.85 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=99.2
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHH
Q 031999 26 GCITTKELGTVMRSLGQNPTEAELQDMINEVDAD-GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAA 104 (149)
Q Consensus 26 g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~ 104 (149)
..++.+.+..+.+.- ..+..+++.+++.+-.. ..|.++-++|..++...-+...+......+|+.||.|++|+|+..
T Consensus 7 ~~~~~~~~e~l~~~t--~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~ 84 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQT--KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFL 84 (193)
T ss_pred ccCCcHHHHHHHHhc--CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHH
Confidence 345555555554432 46778888889888655 489999999999988777766677788999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 105 ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 105 e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
||..++..+.....++-+...|+.+|.|++|+|+++|+++++.
T Consensus 85 Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 85 EFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 9999998887666778899999999999999999999998874
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=1.9e-12 Score=84.44 Aligned_cols=100 Identities=35% Similarity=0.557 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCC-----CHHH
Q 031999 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-----TDEE 121 (149)
Q Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l-----~~~~ 121 (149)
.++..+|..+|.+++|.|+-.++-.++ +.+........+..++..+|.+++|.|+.+||..++....... +.++
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~l-r~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVL-RSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 457889999999999999999998877 4555566788999999999999999999999999998865432 3459
Q ss_pred HHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 122 VDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 122 ~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+.|+.+|.+++|+||..|+.++|.
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 99999999999999999999999885
No 21
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.45 E-value=2.3e-12 Score=81.21 Aligned_cols=108 Identities=33% Similarity=0.642 Sum_probs=87.7
Q ss_pred HHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC-C
Q 031999 37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E 115 (149)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~ 115 (149)
+..+..+|-.. .+.+.+..++.|.+++++|+.++..+....+..-++..+|+.||-|++++|...++..++..+. .
T Consensus 64 MPELkenpfk~---ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~ 140 (189)
T KOG0038|consen 64 MPELKENPFKR---RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD 140 (189)
T ss_pred ChhhhcChHHH---HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc
Confidence 34444455443 4456677799999999999999887777666666788999999999999999999999999875 3
Q ss_pred CCCHHHHHH----HHHhcccCCCCceeHHHHHHHHh
Q 031999 116 KLTDEEVDE----MIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 116 ~l~~~~~~~----l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.+++++++. ++...|.++||++++.||-++++
T Consensus 141 eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 141 ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 588877754 67789999999999999998875
No 22
>PTZ00183 centrin; Provisional
Probab=99.43 E-value=6.5e-12 Score=82.13 Aligned_cols=100 Identities=31% Similarity=0.403 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 031999 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEM 125 (149)
Q Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~-~~~l~~~~~~~l 125 (149)
.++..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.+||..++... ......+.+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 356778899999999999999999887533 333455678999999999999999999999988764 334567789999
Q ss_pred HHhcccCCCCceeHHHHHHHHh
Q 031999 126 IREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 126 ~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
|..+|.+++|.|+..||...+.
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHH
Confidence 9999999999999999998764
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.43 E-value=1.9e-12 Score=86.78 Aligned_cols=83 Identities=29% Similarity=0.504 Sum_probs=39.3
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHh
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f 90 (149)
..|+.+|..+|.|++|.|+..||+.+|..+|+.++..-.+.+.+++|..++|.|.|++|++++... .++-++|
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~F 196 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEAF 196 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHHH
Confidence 344444555555555555555555555555555554444444555544444445555555444322 2233444
Q ss_pred hhhccCCCCc
Q 031999 91 RVFDKDQNGF 100 (149)
Q Consensus 91 ~~~D~~~~g~ 100 (149)
+.+|.+..|.
T Consensus 197 r~~D~~q~G~ 206 (221)
T KOG0037|consen 197 RRRDTAQQGS 206 (221)
T ss_pred HHhcccccee
Confidence 4444444444
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=1.1e-12 Score=77.69 Aligned_cols=64 Identities=23% Similarity=0.521 Sum_probs=57.7
Q ss_pred HHHHHHhhhhcc-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDK-DQ-NGFISAAELRHVMTN---LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~it~~e~~~~~~~---~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..+..+|..||. +| +|+|+.+||++++.. +|.+++++++.++++.+|.|++|.|+|+||+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 346778999998 77 899999999999973 68889999999999999999999999999998874
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.41 E-value=2e-12 Score=72.71 Aligned_cols=61 Identities=46% Similarity=0.876 Sum_probs=49.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHH----HHHHHHHhcCCCCCcccHHHHHHH
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAE----LQDMINEVDADGNGTIDFPEFLNL 72 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~ 72 (149)
++.++|..+|++++|+|+..||..+++.++...+... +..++..+|.+++|.|+|+||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4788999999999999999999999999887665444 444577888888888888888765
No 26
>PTZ00184 calmodulin; Provisional
Probab=99.40 E-value=1.3e-11 Score=79.84 Aligned_cols=99 Identities=30% Similarity=0.456 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 031999 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMI 126 (149)
Q Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~~l~~~~~~~l~ 126 (149)
.+...|..+|.+++|.|++.+|..++.. +......+.+..+|..+|.+++|.|+.++|..++.... .......+..+|
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 4566788899999999999999987743 34334567899999999999999999999999987653 334556788999
Q ss_pred HhcccCCCCceeHHHHHHHHh
Q 031999 127 READVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 127 ~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..+|.+++|.|+.++|.+++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHH
Confidence 999999999999999988763
No 27
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.39 E-value=1.4e-11 Score=100.60 Aligned_cols=135 Identities=26% Similarity=0.565 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC-------CHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhc
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-------TEAELQDMINEVDADGNGTIDFPEFLNLMARKM 77 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 77 (149)
+|++.+.++.-+|++||++.+|.++..+|..||+.+|+.+ +.+.++.++...||+.+|+|+..+|..++...-
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 6789999999999999999999999999999999999875 334789999999999999999999999886543
Q ss_pred C-CCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc----ccC----CCCceeHHHHHHHHh
Q 031999 78 K-DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA----DVD----GDGQINYEEFVKVMM 147 (149)
Q Consensus 78 ~-~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~----d~~----~dg~i~~~ef~~~~~ 147 (149)
. +-...+.+..+|+.+|. +.-|||++++-+ .+++++++-++.++ ++. --+.+.|.+|++.+.
T Consensus 2327 TeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2327 TENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred cccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 2 22344689999999998 888999999876 36777877776664 332 234689999998775
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.39 E-value=2.8e-12 Score=76.93 Aligned_cols=64 Identities=22% Similarity=0.475 Sum_probs=55.3
Q ss_pred HHHHHHhhhhc-cCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFD-KDQNG-FISAAELRHVMTN-L----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~it~~e~~~~~~~-~----~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..+..+|..|| +||+| +|+.+||+.++.. + +...++.++..++..+|.|++|.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45778899999 78998 5999999999976 2 3344778999999999999999999999999874
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.39 E-value=2.1e-12 Score=69.72 Aligned_cols=52 Identities=44% Similarity=0.828 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 97 QNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~~-l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
++|.|++++|+.++..+|.+ ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999999863
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.38 E-value=3.7e-12 Score=76.33 Aligned_cols=65 Identities=28% Similarity=0.634 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhc-cCCCCc-ccHHHHHHHHHH-hCC----CCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFD-KDQNGF-ISAAELRHVMTN-LGE----KLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D-~~~~g~-it~~e~~~~~~~-~~~----~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.+.++.+|..|| .+++|+ |+.+||+.+++. +|. ..+.++++.++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456899999997 999995 999999999986 543 45788999999999999999999999998875
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=3.1e-12 Score=76.95 Aligned_cols=64 Identities=30% Similarity=0.552 Sum_probs=57.4
Q ss_pred HHHHHHhhhhcc-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDK-DQ-NGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~it~~e~~~~~~~-----~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++.+|..||. ++ +|+|+.+||+.++.. +|..++.++++.++..+|.+++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 468889999997 87 699999999999986 45567899999999999999999999999998875
No 32
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.37 E-value=5.5e-12 Score=74.74 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhcC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 7 DDQISEFKEAFSLFDK-DGDGCITTKELGTVMRS-LGQNPTE-AELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
+.-+..+..+|+.+|+ +++|+|+..+|+.++.. ++..++. .++..++..+|.|++|.|+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3456779999999999 99999999999999998 8877776 899999999999999999999999887543
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.37 E-value=2.7e-11 Score=78.63 Aligned_cols=98 Identities=28% Similarity=0.352 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 031999 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMI 126 (149)
Q Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~~l~~~~~~~l~ 126 (149)
++.+.|..+|++++|.|++.++..++. .++...+...+..+|..+|. |.|.|+..+|..+|.... ..-+.+++.+.|
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 356678888999999999999999875 77777788899999999999 999999999999997754 445689999999
Q ss_pred HhcccCCCCceeHHHHHHHHh
Q 031999 127 READVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 127 ~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+|.+++|+|+..|++..+.
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHhCCCCCceecHHHHHHHHH
Confidence 999999999999999998774
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.33 E-value=9.2e-12 Score=70.03 Aligned_cols=59 Identities=34% Similarity=0.548 Sum_probs=54.3
Q ss_pred HHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 87 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 87 ~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+|..+|.+++|.|+.+|++.++...| ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999999887 4888999999999999999999999998763
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.33 E-value=2.9e-11 Score=72.98 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
.++.+++..+..+|..+|++++|.|+..++..+++..+ ++..++..++..+|.+++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 46889999999999999999999999999999999865 67888999999999999999999999987753
No 36
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=3.3e-11 Score=71.39 Aligned_cols=69 Identities=22% Similarity=0.535 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 7 DDQISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-----LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
+.-+..+..+|+.+| ++++| .|+..+|+.+|+. ++..++..++..+++.+|.+++|.|+|++|+.++..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 344577999999998 79999 6999999999998 888889999999999999999999999999987754
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.30 E-value=2.1e-11 Score=72.35 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=55.6
Q ss_pred HHHHHHhhh-hccCCCC-cccHHHHHHHHHHhC-----CCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRV-FDKDQNG-FISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~-~D~~~~g-~it~~e~~~~~~~~~-----~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..+..+|.. +|.+|+| +|+++||+.++.... ...++.++..+++.+|.|+||.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 467888998 7888876 999999999998863 346788999999999999999999999998875
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.29 E-value=1.7e-11 Score=72.81 Aligned_cols=65 Identities=23% Similarity=0.510 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhcc--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDK--DQNGFISAAELRHVMTN-LGEK----LTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~--~~~g~it~~e~~~~~~~-~~~~----l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
...++.+|..||. +++|+|+.+||..+++. +|.. .+.+++..++..+|.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 3568889999999 89999999999999986 4533 3589999999999999999999999999875
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=2.4e-11 Score=73.38 Aligned_cols=63 Identities=27% Similarity=0.555 Sum_probs=57.7
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
...++.+|..+|.+++|.|+.+|++.+++..+ ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 35688899999999999999999999999876 7889999999999999999999999998874
No 40
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.27 E-value=5.3e-11 Score=65.31 Aligned_cols=61 Identities=61% Similarity=1.045 Sum_probs=57.0
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
+..+|..+|.+++|.|+.+|+..+++.++...+...+..++..+|.+++|.|++++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999998765
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.26 E-value=3.4e-11 Score=74.72 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
...+..+|..+|.|++|+|+.+|+..+. ++ .....+..++..+|.|+||.||++||+.+++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4568999999999999999999999876 22 3467788999999999999999999999884
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.23 E-value=1.9e-10 Score=68.21 Aligned_cols=70 Identities=19% Similarity=0.521 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhhcC-CC-CCceeHHHHHHHHH---HcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 7 DDQISEFKEAFSLFDK-DG-DGCITTKELGTVMR---SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~-~~-~g~l~~~e~~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
++.+..+-.+|+.+|. ++ +|+|+..||+.+++ .+|.+++.+++..+++.+|.+++|.|+|.+|+.++...
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5566778999999998 66 89999999999996 36888999999999999999999999999999877543
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.21 E-value=1.5e-10 Score=68.68 Aligned_cols=70 Identities=20% Similarity=0.480 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhhcC--CCCCceeHHHHHHHHHH-cCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 7 DDQISEFKEAFSLFDK--DGDGCITTKELGTVMRS-LGQN----PTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
+++++.++.+|..+|+ +++|.|+..++..+++. ++.. ++..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5778889999999999 89999999999999975 4533 458899999999999999999999999887543
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.20 E-value=2.6e-10 Score=68.24 Aligned_cols=69 Identities=26% Similarity=0.555 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 8 DQISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-L----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 8 ~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
.-+..+.++|+.+| .+++| .|+..++..+|+. + +..++..++..++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34567999999997 99999 5999999999975 4 345788899999999999999999999999877543
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=99.20 E-value=3.4e-10 Score=88.01 Aligned_cols=97 Identities=15% Similarity=0.374 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcC-CCCcHH---HHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHH
Q 031999 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMK-DTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEV 122 (149)
Q Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~---~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~ 122 (149)
.++...|..+|++++|.+ ....+ ..+. .....+ .++.+|..+|.+++|.|+.+||..++..++...+++++
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~il----rslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIF----VSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHH----HHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 456777889999999987 33322 2233 122223 37999999999999999999999999998877889999
Q ss_pred HHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 123 DEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 123 ~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..+|+.+|.+++|.|+++||.+++..
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999998753
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=3.1e-10 Score=68.05 Aligned_cols=70 Identities=21% Similarity=0.474 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 7 DDQISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-L----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
+.-+..+.++|+.+| ++++| +|+..||..++.. + ....+..++..++..+|.+++|.|+|+||+.++...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 344567888899999 78998 5999999999976 2 344577889999999999999999999999987543
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.18 E-value=3.5e-10 Score=68.00 Aligned_cols=67 Identities=22% Similarity=0.523 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhcC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031999 8 DQISEFKEAFSLFDK-DG-DGCITTKELGTVMRS-----LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 8 ~~~~~~~~~f~~~D~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
.-...+..+|..+|. ++ +|.|+..++..++.. ++..++..++..++..+|.+++|.|+|++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345779999999997 87 699999999999986 46678889999999999999999999999998764
No 48
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.17 E-value=2.3e-10 Score=64.25 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=53.8
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 14 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
+.+|..+|++++|.|+..++..++..++. +...+..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999998864 7788999999999999999999999987643
No 49
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.3e-09 Score=69.89 Aligned_cols=99 Identities=30% Similarity=0.418 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHH-hCCCCCHHHHHHH
Q 031999 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEM 125 (149)
Q Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~-~~~~l~~~~~~~l 125 (149)
.++..-|..++++++|.|+++++..++. -++-....+.+..+..-+|++++|.|+.++|++.+.. ++..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 3467788899999999999999855443 2343446678899999999999999999999999866 5665699999999
Q ss_pred HHhcccCCCCceeHHHHHHHH
Q 031999 126 IREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 126 ~~~~d~~~dg~i~~~ef~~~~ 146 (149)
|+.+|.+.+|.||+.+|+...
T Consensus 112 frl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HHcccccCCCCcCHHHHHHHH
Confidence 999999999999999998765
No 50
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.12 E-value=3.2e-10 Score=67.30 Aligned_cols=65 Identities=20% Similarity=0.493 Sum_probs=55.6
Q ss_pred HHHHHHhhhhccC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 84 EELKEAFRVFDKD--QNGFISAAELRHVMT-NLGEKLT----DEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~--~~g~it~~e~~~~~~-~~~~~l~----~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..+...|..|+.. ++|+|+.+||+.++. .++..++ +.++..++..+|.+++|.|+|+||+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567789999865 479999999999997 5565566 899999999999999999999999998753
No 51
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.12 E-value=2.1e-09 Score=72.03 Aligned_cols=99 Identities=23% Similarity=0.394 Sum_probs=82.3
Q ss_pred HHHhhhhcCCCCCc-eeHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCc--HH----H
Q 031999 14 KEAFSLFDKDGDGC-ITTKELGTVMRSLGQNPTEA-ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS--EE----E 85 (149)
Q Consensus 14 ~~~f~~~D~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~--~~----~ 85 (149)
.+++..++.+++|. |+.++|...+..+...-+.. .+.-.|+.+|.+++|.|+.+++..++......... .+ -
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 56788889988888 99999999998875554444 78889999999999999999999998877765433 33 3
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHH
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~ 112 (149)
+...|..+|.+++|+|+.+|+..++..
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 567799999999999999999998764
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.11 E-value=6.5e-10 Score=59.88 Aligned_cols=51 Identities=37% Similarity=0.678 Sum_probs=46.7
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031999 24 GDGCITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
.+|.|+.++|..+|..+|.. ++..++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 36999999999999888888 9999999999999999999999999998875
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=1.2e-09 Score=59.82 Aligned_cols=61 Identities=57% Similarity=1.008 Sum_probs=54.4
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 13 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678899999999999999999999999888899999999999999999999999997653
No 54
>PF14658 EF-hand_9: EF-hand domain
Probab=99.05 E-value=1.2e-09 Score=60.33 Aligned_cols=59 Identities=25% Similarity=0.586 Sum_probs=55.5
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcccCCC-CceeHHHHHHHHh
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGD-GQINYEEFVKVMM 147 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~~~-~l~~~~~~~l~~~~d~~~d-g~i~~~ef~~~~~ 147 (149)
+|..||.+++|.|...++..+|++++. ..++.+++.+.+.+|+++. |.|+++.|+..|.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 699999999999999999999999987 7789999999999999987 9999999999875
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.05 E-value=3.5e-09 Score=62.87 Aligned_cols=69 Identities=28% Similarity=0.492 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhh-hcCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 7 DDQISEFKEAFSL-FDKDGDG-CITTKELGTVMRSL-----GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 7 ~~~~~~~~~~f~~-~D~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
+..+..|..+|+. .|++++| .|+..||..++... +......++..++..+|.|++|.|+|++|+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4566789999999 6788876 99999999999764 33456688999999999999999999999987754
No 56
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.00 E-value=5.3e-09 Score=69.54 Aligned_cols=110 Identities=28% Similarity=0.433 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 83 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 83 (149)
+++..++..+..+|+.+|.+.+|+|+..|+..++..+|.+.++--+..++...|.+.+|.|+|.+|+.++..........
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999998875443322111
Q ss_pred -HHHHHH--hhhhccCCCCcccHHHHHHHHHHh
Q 031999 84 -EELKEA--FRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 84 -~~~~~~--f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
..+..+ ....|..+.|......|.++=...
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~ 204 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEA 204 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHHHHHHh
Confidence 122222 345899999999998888764443
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=98.96 E-value=5.9e-09 Score=57.59 Aligned_cols=60 Identities=40% Similarity=0.752 Sum_probs=55.8
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCC-CcccHHHHHHHHH
Q 031999 15 EAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGN-GTIDFPEFLNLMA 74 (149)
Q Consensus 15 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~ 74 (149)
..|..+|+++.|.|...++..+|+..+. .|...+++.+...+|+++. |.|++++|+.++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3689999999999999999999999988 8999999999999999887 9999999998764
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.92 E-value=1.1e-08 Score=63.49 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHH
Q 031999 44 PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM 110 (149)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~ 110 (149)
.-...+...|..+|.|++|.|+..|...+. + ...+..+..+|..+|.|++|.||.+||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR---L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 344567788888999999999999988654 1 2245677888999999999999999999888
No 59
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.84 E-value=5.4e-08 Score=71.67 Aligned_cols=129 Identities=22% Similarity=0.409 Sum_probs=91.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCH--HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHH
Q 031999 13 FKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTE--AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEA 89 (149)
Q Consensus 13 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~--~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (149)
+.--|..+|+..+|.|+..+|..+|-.. +.+... ..+..+-+.++.. +-.|+++||.++. .++..- ..+..+
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff-~Fl~~l---~dfd~A 394 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF-RFLNNL---NDFDIA 394 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH-HHHhhh---hHHHHH
Confidence 3444888899888999999998876543 222222 2356666677544 4469999998876 333322 233334
Q ss_pred hhhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 90 FRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 90 f~~~D~~~~g~it~~e~~~~~~~~-~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
...|- .-.+.|+..+|+++-+.+ |..+++..+.-+|.-+|.|+||.||++||+..|-
T Consensus 395 l~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 395 LRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred HHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 44442 234569999999998774 6788888888899999999999999999999874
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.83 E-value=3.5e-08 Score=58.51 Aligned_cols=70 Identities=17% Similarity=0.389 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhhcCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 7 DDQISEFKEAFSLFDKD--GDGCITTKELGTVMR-SLGQNPT----EAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
+.-+..+...|+.++.. .+|.|+..+|..++. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34557788899999865 479999999999996 5555555 8889999999999999999999999877543
No 61
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.79 E-value=7.3e-08 Score=56.92 Aligned_cols=63 Identities=17% Similarity=0.457 Sum_probs=51.1
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~-----~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..+..+|..|- .+.+.+++.||+.++..- ...-.+..+..+++.+|.|+||.|+|.||+.++.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 44667888887 345689999999999652 2234678899999999999999999999998874
No 62
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.75 E-value=2.1e-07 Score=68.19 Aligned_cols=98 Identities=17% Similarity=0.380 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q 031999 45 TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124 (149)
Q Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~ 124 (149)
....+..+|+.+|.+++|.|+..+....+...-......+.+..+|...|.|.+|.++.+||++++.. .+.++-.
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~ 86 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYR 86 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHH
Confidence 34467889999999999999999988766443332245577889999999999999999999999864 3557888
Q ss_pred HHHhcccCCCCceeHHHHHHHHh
Q 031999 125 MIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 125 l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+|..+|.++||.|+..|.-+++.
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHH
Confidence 99999999999999998877653
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=1.7e-08 Score=47.05 Aligned_cols=27 Identities=52% Similarity=0.800 Sum_probs=18.8
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHH
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~ 112 (149)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456777777777777777777776654
No 64
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.74 E-value=9.8e-08 Score=70.78 Aligned_cols=130 Identities=21% Similarity=0.369 Sum_probs=95.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHH----hcCCCCCcccHHHHHHHHHhhcCCCCcHHHHH
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE----VDADGNGTIDFPEFLNLMARKMKDTDSEEELK 87 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 87 (149)
.+.-.|-.+|+|++|.|+.+++...-.. ..+..-++.+|.. .-...+|.++|++|+-++.... ......-++
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~Sle 354 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPASLE 354 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccchh
Confidence 3344477889999999999999875322 3445667888883 3335688999999998876543 333456789
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHh-------C-CCCC-HHHHHHHHHhcccCCCCceeHHHHHHH
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNL-------G-EKLT-DEEVDEMIREADVDGDGQINYEEFVKV 145 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~-------~-~~l~-~~~~~~l~~~~d~~~dg~i~~~ef~~~ 145 (149)
..|+-+|.+++|.|+..|++-++... + ..+. +.-+.+++..+.+...|.|+..+|...
T Consensus 355 YwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 355 YWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred hheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 99999999999999999998776542 2 2233 344556777777788899999999764
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.71 E-value=8.1e-08 Score=63.99 Aligned_cols=63 Identities=33% Similarity=0.686 Sum_probs=56.1
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
..+..+|+.||.+.+|+|+..|++.+|..+|.+-+.=-+..++.+.|-|.||+|||.||+=.+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 457788999999999999999999999999977677678889999999999999999997543
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.67 E-value=4.4e-08 Score=67.34 Aligned_cols=137 Identities=21% Similarity=0.268 Sum_probs=90.0
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHH-cC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcH--H
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRS-LG--QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE--E 84 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~-~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~ 84 (149)
...++.+|...|.|.+|.||..++++++.. .. +.....+....|...|++++|.|+|++|..-+....+..... .
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevad 179 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVAD 179 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHH
Confidence 366999999999999999999999987653 21 122333455568889999999999999986554332221110 0
Q ss_pred -----------HHHHHhhhhccCCCCcc---------cHHHHHHHHHHh-CCCCCHHHHHHHHHhcccCCCCceeHHHHH
Q 031999 85 -----------ELKEAFRVFDKDQNGFI---------SAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
Q Consensus 85 -----------~~~~~f~~~D~~~~g~i---------t~~e~~~~~~~~-~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~ 143 (149)
.-.+.|..-+++..|.. |-+||..++..- ...+-..-+..|+..+|.++|-.+|-.||+
T Consensus 180 airlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFi 259 (362)
T KOG4251|consen 180 AIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFI 259 (362)
T ss_pred HhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhh
Confidence 01122333344444444 447777766432 111223456778899999999999999999
Q ss_pred HHH
Q 031999 144 KVM 146 (149)
Q Consensus 144 ~~~ 146 (149)
+..
T Consensus 260 slp 262 (362)
T KOG4251|consen 260 SLP 262 (362)
T ss_pred cCC
Confidence 765
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.66 E-value=3.9e-07 Score=67.28 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=89.9
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHH------cCC----CCC-----HHHHH--HHHHHhcCCCCCcccHHHHHHHHH
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRS------LGQ----NPT-----EAELQ--DMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~------~~~----~~~-----~~~~~--~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
.+.-.|+.+|.|+||.|+.+||..+.+- ++. .++ ...+. .+..-|..++++++++++|+.+..
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3556799999999999999999876531 111 011 11121 234456789999999999999876
Q ss_pred hhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHHHhcccCCCCceeHHHHHHH
Q 031999 75 RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTD--EEVDEMIREADVDGDGQINYEEFVKV 145 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~~l~~--~~~~~l~~~~d~~~dg~i~~~ef~~~ 145 (149)
.. +.+-++.=|..+|+..+|.|+..+|..++-... .+... ..+...-++++.. +-.||++||...
T Consensus 314 ~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~F 381 (489)
T KOG2643|consen 314 NL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAF 381 (489)
T ss_pred HH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHH
Confidence 54 456677779999999999999999999998764 23222 2345566667665 346999888654
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.65 E-value=1.7e-07 Score=70.24 Aligned_cols=123 Identities=24% Similarity=0.391 Sum_probs=87.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcC------CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHH
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLG------QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEE 85 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 85 (149)
....+|..+|..++|.+|.+++..++.+.. .+.+.+-+.. .+.....-.++|.+|.+++..+ ..|.
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~-----~~E~ 180 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEF-----QLEH 180 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHH-----HHHH
Confidence 356778888888888888888888776532 2233333333 3444455678888888887655 3466
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCC-ceeHHHH
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG-QINYEEF 142 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg-~i~~~ef 142 (149)
.+++|+..|+.++|+||.=+|+.++.....++.+..++..+...-...+| ++|+..|
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 88999999999999999999999998877666666777666555444444 5777655
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.62 E-value=7e-08 Score=45.77 Aligned_cols=30 Identities=53% Similarity=0.996 Sum_probs=25.2
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHH-HhC
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMT-NLG 114 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~-~~~ 114 (149)
+++.+|+.+|.|++|+|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 564
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.59 E-value=1e-06 Score=52.10 Aligned_cols=68 Identities=16% Similarity=0.395 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRS-----LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 8 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
.-+..+-.+|+.+. ...+.++..||+.+++. +....+...+..+++.+|.|+||.|+|.||+..+...
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34566788899987 55679999999998853 2344567789999999999999999999999887543
No 71
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.54 E-value=5.6e-07 Score=54.81 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
.+++++...+..+|..+|+ .+|.|+..+...++... .++.+.+..+|...|.+++|.++++||+.++
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 5678899999999999986 57999999999988876 4778999999999999999999999999765
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.54 E-value=8.6e-07 Score=54.00 Aligned_cols=62 Identities=29% Similarity=0.574 Sum_probs=53.6
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.......+|...|. ++|.|+-++.+.++..-+ ++.+.+..|+...|.+++|+++++||+-+|
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 34567889999985 689999999999998876 888999999999999999999999998765
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=2.8e-07 Score=42.93 Aligned_cols=27 Identities=52% Similarity=0.815 Sum_probs=20.2
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHH
Q 031999 13 FKEAFSLFDKDGDGCITTKELGTVMRS 39 (149)
Q Consensus 13 ~~~~f~~~D~~~~g~l~~~e~~~~l~~ 39 (149)
+..+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567777777777777777777777654
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.50 E-value=9.3e-07 Score=56.64 Aligned_cols=44 Identities=41% Similarity=0.853 Sum_probs=32.2
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~ 127 (149)
..++++|..+|.|++|.|.+++|+.++..+|...+++++..+++
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~ 75 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK 75 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45777888888888888888888888877776666666655544
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.47 E-value=7.9e-07 Score=66.14 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=47.1
Q ss_pred CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.....++.+|+.+|.+++|+|+.+||.. ...+|..+|.|+||.|+++||...+.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3456678899999999999999999942 57889999999999999999998763
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.40 E-value=7.1e-07 Score=42.25 Aligned_cols=30 Identities=57% Similarity=1.014 Sum_probs=25.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH-HcC
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMR-SLG 41 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~-~~~ 41 (149)
+++.+|..+|++++|+|+.+||..+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 554
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.39 E-value=1.4e-05 Score=60.30 Aligned_cols=105 Identities=15% Similarity=0.320 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeHHHHHHH-HHHcCCCCCHHHHHHHHHH-hcCCCCCcccHHHHHHHHHhhcCCCCcHH
Q 031999 7 DDQISEFKEAFSLFDKDGDGCITTKELGTV-MRSLGQNPTEAELQDMINE-VDADGNGTIDFPEFLNLMARKMKDTDSEE 84 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~~~~~~-~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 84 (149)
++++..+.--|...+.++.-..+.++|... +.-.+.+-.++++..++.. .|..+||.|+|.||+++-... +. +..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l--C~-pDa 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL--CA-PDA 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc--cC-chH
Confidence 445555555556667788888999999774 4444555555666555555 456789999999999864322 21 345
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHhC
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
....+|..||..+.|.+|-+++.+++....
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 567899999999999999999999987643
No 78
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.39 E-value=6.1e-07 Score=64.03 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031999 47 AELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
Q Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~ 126 (149)
+.+..+|..||.+++|.++|.+....+....+.......++.+|+.|+.+-+|+++-.+|.-+|+... .+..=.+--+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 55677899999999999999998877766666666778899999999999999999999998887642 12222344678
Q ss_pred HhcccCCCCceeHHHHHHHHh
Q 031999 127 READVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 127 ~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++...+|+|++++|.+.+.
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hhhhcccCcceeHHHHHHHHH
Confidence 889999999999999998764
No 79
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.34 E-value=2e-07 Score=57.72 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=45.6
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHH
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 145 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~ 145 (149)
....+..-|..+|.|++|.|++.|+..+...+ .-.+.-+..++..+|.|+||.||..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 44667888999999999999999999875544 234556889999999999999999999764
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.34 E-value=1.4e-06 Score=60.07 Aligned_cols=118 Identities=19% Similarity=0.414 Sum_probs=86.8
Q ss_pred eeHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCC--------cHHHHHHHhhhhccCCC
Q 031999 28 ITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--------SEEELKEAFRVFDKDQN 98 (149)
Q Consensus 28 l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--------~~~~~~~~f~~~D~~~~ 98 (149)
++..+|..+|..-. ......-+..+...+|.+++..++-.+|+........... .+.+.+.+-..+|.|.+
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 34477777664211 1112234677889999999999999999986543322211 12345566678999999
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHH
Q 031999 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 145 (149)
Q Consensus 99 g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~ 145 (149)
|.+|.+|+..+....++.+...++..++..-|.|++..++.+|.+..
T Consensus 296 GivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 296 GIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred cceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 99999999999887777777788999999999999999999988753
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.30 E-value=1e-06 Score=39.54 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=13.6
Q ss_pred HHHhhhhccCCCCcccHHHHHHH
Q 031999 87 KEAFRVFDKDQNGFISAAELRHV 109 (149)
Q Consensus 87 ~~~f~~~D~~~~g~it~~e~~~~ 109 (149)
+.+|..+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 82
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.29 E-value=2e-06 Score=71.71 Aligned_cols=64 Identities=25% Similarity=0.577 Sum_probs=57.7
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCCC--CH-----HHHHHHHHhcccCCCCceeHHHHHHHHhcC
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKL--TD-----EEVDEMIREADVDGDGQINYEEFVKVMMAK 149 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l--~~-----~~~~~l~~~~d~~~dg~i~~~ef~~~~~~~ 149 (149)
+..+|++||.+++|.++-++|+.|++.+|+.+ .+ ..+++++...|+|.+|+|+..+|+.+|+++
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 45679999999999999999999999999765 23 489999999999999999999999999864
No 83
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.28 E-value=2.7e-05 Score=49.18 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccC--CCCcccHHHHHHHHHHhCC---CCCHH
Q 031999 46 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKD--QNGFISAAELRHVMTNLGE---KLTDE 120 (149)
Q Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~it~~e~~~~~~~~~~---~l~~~ 120 (149)
..++..+|..||..++|+|++.+.-.++ +.++.-+....+.+....++++ +-..|+.++|.-++..++. ..+-+
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvl-RalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVL-RALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHH-HHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 3678889999999999999999977665 5566666677788888888877 5567999999999988764 34667
Q ss_pred HHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 121 EVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 121 ~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
++-+-++.+|..++|.|...|+.+.+.
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHH
Confidence 788889999999999999999998874
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.24 E-value=6.1e-06 Score=43.15 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
++.+|++.+++.++..+++..+..+|..+|.+++|++.-+||...+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 5778888888888888888888888888888888888888877654
No 85
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.21 E-value=6.6e-05 Score=59.23 Aligned_cols=139 Identities=17% Similarity=0.313 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHH
Q 031999 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEE 85 (149)
Q Consensus 6 ~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 85 (149)
......-+..+|...|++.+|.++..+...++..+...+....+..+++..+..+++.+...+|..+....... ..
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----pe 206 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----PE 206 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----ch
Confidence 34555668889999999999999999999999998888888888888888888889999999998876544322 25
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcccC----CCCceeHHHHHHHHhcC
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAK 149 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~--~~l~~~~~~~l~~~~d~~----~dg~i~~~ef~~~~~~~ 149 (149)
+..+|..+-. +.++++.+++.+++...+ ...+...++.|+..+... ..+.++.+.|.++|.+.
T Consensus 207 v~~~f~~~s~-~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 207 VYFLFVQYSH-GKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred HHHHHHHHhC-CCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 7778877753 489999999999998875 347788888888777543 45669999999999763
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.19 E-value=1.1e-05 Score=60.21 Aligned_cols=59 Identities=25% Similarity=0.413 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh
Q 031999 41 GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 41 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
+.......+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||.++++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5566777889999999999999999999842 4668999999999999999999998764
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=6.5e-05 Score=59.47 Aligned_cols=60 Identities=28% Similarity=0.633 Sum_probs=53.0
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
..+++|...|+...|++|-..=+.+|-.-+ ++...+..|+...|.|+||+++-+||+=.|
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 356789999999999999999888876654 788889999999999999999999998665
No 88
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.17 E-value=1.1e-05 Score=60.11 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh---hcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHH
Q 031999 48 ELQDMINEVDADGNGTIDFPEFLNLMAR---KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMT 111 (149)
Q Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~---~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~ 111 (149)
.++.+|..+|.++.|.|+.+||.++|.- .+...-....+-++-+.+|.|++|+|...||..+++
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3445555555555555555555554421 222233344455555555555555555555555554
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=4.2e-06 Score=37.49 Aligned_cols=24 Identities=46% Similarity=0.808 Sum_probs=19.1
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHH
Q 031999 13 FKEAFSLFDKDGDGCITTKELGTV 36 (149)
Q Consensus 13 ~~~~f~~~D~~~~g~l~~~e~~~~ 36 (149)
|+.+|..+|.|++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456788888888888888888765
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.14 E-value=3.8e-05 Score=57.41 Aligned_cols=136 Identities=20% Similarity=0.362 Sum_probs=91.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCC--------CH------HHHHHHHHHhcCCCCCcccHHHHHHHH-
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNP--------TE------AELQDMINEVDADGNGTIDFPEFLNLM- 73 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~--------~~------~~~~~~~~~~d~~~~g~i~~~ef~~~~- 73 (149)
...+.+++..++..+-|++...+|...|+.+- ..+ .. --+.++|-.++....|.|+..+.+..-
T Consensus 173 ~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snl 252 (493)
T KOG2562|consen 173 HTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNL 252 (493)
T ss_pred HHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHH
Confidence 34566677888888888888888888777542 111 11 114556667788899999998876531
Q ss_pred -Hh--hcCC---------CCcHHHHHHH---hhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH----hcccCCC
Q 031999 74 -AR--KMKD---------TDSEEELKEA---FRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIR----EADVDGD 134 (149)
Q Consensus 74 -~~--~~~~---------~~~~~~~~~~---f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~----~~d~~~d 134 (149)
.. .+.. .-.-+.+..+ |..+|+|.+|.|+++++..+.... ++..-+..+|. ..-.-.+
T Consensus 253 l~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~e 329 (493)
T KOG2562|consen 253 LDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVE 329 (493)
T ss_pred HHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeec
Confidence 11 0110 0111333444 777899999999999999876543 45667788888 4555678
Q ss_pred CceeHHHHHHHHhc
Q 031999 135 GQINYEEFVKVMMA 148 (149)
Q Consensus 135 g~i~~~ef~~~~~~ 148 (149)
|+++|++|+..+++
T Consensus 330 GrmdykdFv~FilA 343 (493)
T KOG2562|consen 330 GRMDYKDFVDFILA 343 (493)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999988764
No 91
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.04 E-value=5.4e-05 Score=48.31 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=73.0
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHH----HH
Q 031999 14 KEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL----KE 88 (149)
Q Consensus 14 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~ 88 (149)
+++...+..++.|.+|..+|..++..+. ..|..-.+.--|+-+|-++++.|.-++....+....+.....+.+ ..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 3444556679999999999988877553 233333444456678899999999999888776665554444444 45
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHh
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
+....|.||+|.|+..||..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 5667799999999999999987653
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.95 E-value=4.9e-05 Score=44.39 Aligned_cols=63 Identities=27% Similarity=0.586 Sum_probs=51.8
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhcccC----CCCceeHHHHHHHHhcC
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAK 149 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~--~l~~~~~~~l~~~~d~~----~dg~i~~~ef~~~~~~~ 149 (149)
+..+|..+-. +.+.+|.++|.+.|..... .++..++..++..+..+ ..+.+|+++|..+|+++
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5678888854 7889999999999987642 46899999999988655 47899999999999874
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.94 E-value=7.2e-05 Score=56.81 Aligned_cols=73 Identities=29% Similarity=0.566 Sum_probs=64.0
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN---PTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
..+++.+++..+...|..+| +++|+++..++..++...+.. ...+++..++...+.+.+|.|+|++|+.++..
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45789999999999999999 999999999999999887644 34678899999999999999999999986643
No 94
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.86 E-value=0.00027 Score=54.60 Aligned_cols=141 Identities=23% Similarity=0.381 Sum_probs=92.4
Q ss_pred CCcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHH-HHHcCCCCCHHHHHHHHHHhc---CCC--CCcccHHHHHHHHHh
Q 031999 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTV-MRSLGQNPTEAELQDMINEVD---ADG--NGTIDFPEFLNLMAR 75 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~~~~~~~d---~~~--~g~i~~~ef~~~~~~ 75 (149)
.+++.+.-+..|.++|...|.|.+|.+|-.|+..+ ..+++.++....+..+-...+ +++ +..++...|+..-..
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 35667788899999999999999999999998765 345777776666544333332 221 345666667654211
Q ss_pred h----------------------------cCC----C---------CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC
Q 031999 76 K----------------------------MKD----T---------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 76 ~----------------------------~~~----~---------~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
+ +.. + ..-+.+..+|..||.|++|-++..|+..++...+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 0 000 0 0113567889999999999999999999998764
Q ss_pred C-C-CCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 115 E-K-LTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 115 ~-~-l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
. + ......+. -..+..|.++++.|+..+
T Consensus 346 ~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 346 GSPWTSSPYKDS----TVKNERGWLTLNGFLSQW 375 (625)
T ss_pred CCCCCCCccccc----ceecccceeehhhHHHHH
Confidence 2 1 11111111 112378899999998765
No 95
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.85 E-value=0.00015 Score=37.96 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=21.7
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 28 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 28 l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
+|..|+..+|+.+....+...+..+|..+|.+++|.+.-+||..++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.83 E-value=8.5e-05 Score=56.46 Aligned_cols=62 Identities=39% Similarity=0.717 Sum_probs=54.7
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL---TDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l---~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.++..|...| ++.|+||..|+..++...+... ..+++++++...+.+.+|.|+|++|+..+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4677899999 9999999999999999876543 578999999999999999999999998654
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.71 E-value=1.3e-05 Score=49.67 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHH
Q 031999 42 QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRH 108 (149)
Q Consensus 42 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~ 108 (149)
...-...+.-.|..+|.|++|.++..|...+.. .+ ...+..++.+|...|.|++|.||..|...
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~-~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRR-PL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS-TT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH-HH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344555677789999999999999999776532 22 23445788899999999999999999764
No 98
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.65 E-value=0.00099 Score=54.01 Aligned_cols=103 Identities=24% Similarity=0.308 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHH-----HHHHHHHHhcCCCCCcccHHHHHHHHHhhcCC
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEA-----ELQDMINEVDADGNGTIDFPEFLNLMARKMKD 79 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 79 (149)
.+.....+++.+|..+|+...|.++.+++..+|..+|.+..++ ++..+....|++..|.|++.+|...+.+....
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 3456678899999999999999999999999999999887753 34455666677777999999999998877777
Q ss_pred CCcHHHHHHHhhhhccCCCCcccHHHHHH
Q 031999 80 TDSEEELKEAFRVFDKDQNGFISAAELRH 108 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~it~~e~~~ 108 (149)
.+...++..+|+..-+++. +|+.+||.+
T Consensus 821 l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7777888888888876665 799999988
No 99
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00021 Score=43.76 Aligned_cols=59 Identities=34% Similarity=0.661 Sum_probs=46.2
Q ss_pred HHHhhhhccCCCCcccHHHHHHHHHHh------CC---CC-CHHHHHH----HHHhcccCCCCceeHHHHHHH
Q 031999 87 KEAFRVFDKDQNGFISAAELRHVMTNL------GE---KL-TDEEVDE----MIREADVDGDGQINYEEFVKV 145 (149)
Q Consensus 87 ~~~f~~~D~~~~g~it~~e~~~~~~~~------~~---~l-~~~~~~~----l~~~~d~~~dg~i~~~ef~~~ 145 (149)
-..|.+.|.|++|.|.--|+..++..+ |. ++ ++.+++. ++..-|.|+||.|+|-||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 346899999999999999999988654 21 23 4555544 567789999999999999875
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00031 Score=31.42 Aligned_cols=26 Identities=50% Similarity=0.851 Sum_probs=16.3
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHH
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMT 111 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~ 111 (149)
++.+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666666666666654
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.19 E-value=0.00067 Score=30.23 Aligned_cols=26 Identities=54% Similarity=0.916 Sum_probs=17.1
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHH
Q 031999 13 FKEAFSLFDKDGDGCITTKELGTVMR 38 (149)
Q Consensus 13 ~~~~f~~~D~~~~g~l~~~e~~~~l~ 38 (149)
+..+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666777677777777666654
No 102
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.88 E-value=0.0051 Score=44.55 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=80.1
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHH
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKE 88 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 88 (149)
...++.+|..+|.+++|.++..+-...+.-+-. +-+..-++--|+.++...||.++-.++..+++..++-. .-.+--
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~ 335 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPV 335 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccc
Confidence 367889999999999999999888877766643 34555677789999999999999999888776544321 223556
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHh
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
+|...+...+|.|+..+|+++....
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhC
Confidence 7999999999999999999987553
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.86 E-value=0.0067 Score=35.24 Aligned_cols=63 Identities=19% Similarity=0.454 Sum_probs=44.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHHhcCC----CCCcccHHHHHHHHHh
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRSL-GQ-NPTEAELQDMINEVDAD----GNGTIDFPEFLNLMAR 75 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 75 (149)
++..+|..+.. +.+.++.++|..+|+.- +. ..+..++..++..+.++ ..+.+++++|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 35677877754 67888888888888754 33 35677788888777543 3677888888877754
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=96.79 E-value=0.024 Score=44.82 Aligned_cols=88 Identities=16% Similarity=0.335 Sum_probs=57.8
Q ss_pred CCCcccHHHHHHHHHhhc-CCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhc----c--
Q 031999 60 GNGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREA----D-- 130 (149)
Q Consensus 60 ~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~--~l~~~~~~~l~~~~----d-- 130 (149)
+.|.++|++|..+...+. ........+..+|..+-. +.+.+|.++|..+|..... ..+.+.++.++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 357889998877654332 222345678888888854 3367999999998887652 35666666665432 1
Q ss_pred -cCCCCceeHHHHHHHHhc
Q 031999 131 -VDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 131 -~~~dg~i~~~ef~~~~~~ 148 (149)
..+.+.++++.|..+|++
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345889999888875
No 105
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.66 E-value=0.0007 Score=37.99 Aligned_cols=58 Identities=28% Similarity=0.499 Sum_probs=42.5
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCC-------CCceeHHHHHHHHh
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-------DGQINYEEFVKVMM 147 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~-------dg~i~~~ef~~~~~ 147 (149)
..+.+..+|+.+ .++.++||.+||++. +++++++-+..++..-. -|.++|..|++.+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~-------l~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l~ 68 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRS-------LTPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSLF 68 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHH-------S-CCCHHHHHCCSEC--SSS----TTEEECHHHHCCCT
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHH-------cCcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHHh
Confidence 457899999999 788899999999996 44555677777665432 26799999986543
No 106
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.012 Score=36.18 Aligned_cols=66 Identities=32% Similarity=0.546 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc------CC----CCCHHHH----HHHHHHhcCCCCCcccHHHH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL------GQ----NPTEAEL----QDMINEVDADGNGTIDFPEF 69 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~------~~----~~~~~~~----~~~~~~~d~~~~g~i~~~ef 69 (149)
+++++++. ...|...|-|++|.++--|+..++.-. |. -+++.++ ..++..-|.|++|.|+|.||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 34444443 346778899999999999998887532 22 1344444 44555567788999999998
Q ss_pred HH
Q 031999 70 LN 71 (149)
Q Consensus 70 ~~ 71 (149)
+.
T Consensus 140 lK 141 (144)
T KOG4065|consen 140 LK 141 (144)
T ss_pred Hh
Confidence 75
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.0099 Score=45.45 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
++++++...+..-|+-+-+|-+|.|+-.--++++... +++-.++..+|+..|.+.||.+++.||++++
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 5678899999999999999999999988777777654 4677789999999999999999999999876
No 108
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.50 E-value=0.0019 Score=46.71 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHhhhhccCCCCcccHHHHH---HHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 85 ELKEAFRVFDKDQNGFISAAELR---HVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~---~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.++..|..+|+|.++.|.+.|++ +++.... -..+-..++++..|.|+|-.||+.|+..++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 45667888888888888877744 3333322 2234566778888888888888888887763
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.44 E-value=0.092 Score=34.83 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhc--C-CCCCcccHHHHHHHHHh----h------
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD--A-DGNGTIDFPEFLNLMAR----K------ 76 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d--~-~~~g~i~~~ef~~~~~~----~------ 76 (149)
...+++=..-+|.|++|.|..-|-...++.+|.++.-.-+..++-... . ...+-+.---|.-.+.. +
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 345666677889999999999999999999998765554333222111 0 00111110001100100 0
Q ss_pred ---cCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCC-----CCHHHHHHHHH-hcccCCCCceeHHHHHHH
Q 031999 77 ---MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-----LTDEEVDEMIR-EADVDGDGQINYEEFVKV 145 (149)
Q Consensus 77 ---~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~-----l~~~~~~~l~~-~~d~~~dg~i~~~ef~~~ 145 (149)
..+.-..++++++|..++..+.+.+|..|+.++++.-... .....++.... .+-.+.+|.++.+....+
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 0111236789999999999889999999999999872211 12234443222 233567899988876554
No 110
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.35 E-value=0.0029 Score=45.77 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHH
Q 031999 49 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 49 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~ 112 (149)
+...|..+|.|.++.|+..|+..+-.............+.+|++.|.|++..||.+|++.++..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4557888999999999988877654433444456678899999999999999999999998854
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.35 E-value=0.0069 Score=44.19 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=39.4
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
..+..+|..+|.|.+|.|+..|++.+-. .-.+.-+..+|...|.-.||.||-.|++.++
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 4466777777777777777777766432 1244556777777777777777777776654
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.34 E-value=0.046 Score=43.86 Aligned_cols=98 Identities=19% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 031999 44 PTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVD 123 (149)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~ 123 (149)
....|+..++...|.+.+|.+++.+-..++. .+...-....++..|+..|..+++.++..++.++....+.. + ++.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~-~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev~ 208 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLK-QLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EVY 208 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHH-HHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hHH
Confidence 4456789999999999999999999887764 33333345677888988898999999999999988877632 2 677
Q ss_pred HHHHhcccCCCCceeHHHHHHHH
Q 031999 124 EMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 124 ~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.+|..+-.+ .+.++.+++...+
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHH
Confidence 777666655 5677776655544
No 113
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.30 E-value=0.022 Score=44.38 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCC
Q 031999 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD 79 (149)
Q Consensus 4 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 79 (149)
.+++++.......|..+|.++.|+++..+....|+..+...+.+.++.+....+.+-+|.+...+|.+.......+
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 4678899999999999999999999999999999988888999999999999998889999999998877554433
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.17 E-value=0.01 Score=43.38 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=73.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ---NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELK 87 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 87 (149)
.+|+.+|..+=.++++......+...-..+.. ++=...+..+|..+|.|.++.++-.|...+... ..+..++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHH
Confidence 45778888776676666655555544333322 234467888999999999999999997665432 2457899
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHhC
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
.+|...|..++|.|+..|.=.++..-.
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCC
Confidence 999999999999999999887776554
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.0091 Score=47.92 Aligned_cols=62 Identities=21% Similarity=0.437 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
-..++++|..+|+..+|++|-..-+.+|-+.+ ++...+..++..-|.|+||.++.+||+.++
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 35689999999999999999999999887664 667788899999999999999999998653
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.0074 Score=49.67 Aligned_cols=137 Identities=20% Similarity=0.372 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---hcC---
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR---KMK--- 78 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~---~~~--- 78 (149)
++..+...+..+|.-+.+. +|.++....+-+|... .++...+..++...|.+.+|.++..+|...+.. .+.
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 3566777888888888765 6888877777666543 456667778888888899999999998865310 000
Q ss_pred ----------------------------------------------------------------------------C--C
Q 031999 79 ----------------------------------------------------------------------------D--T 80 (149)
Q Consensus 79 ----------------------------------------------------------------------------~--~ 80 (149)
. .
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 0 0
Q ss_pred CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.....+..+|...|.+.+|.|+..+.+..+...| ++...+..++...|..+.|.+++.+|.-.+
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 1123456689999999999999999998887755 788889999999999999999999876443
No 117
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.80 E-value=0.36 Score=39.91 Aligned_cols=120 Identities=16% Similarity=0.347 Sum_probs=81.7
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhc--CCCCCcccHHHH-----HHHHHhhcCCCCcHHHHHHHhhhhc
Q 031999 22 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD--ADGNGTIDFPEF-----LNLMARKMKDTDSEEELKEAFRVFD 94 (149)
Q Consensus 22 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef-----~~~~~~~~~~~~~~~~~~~~f~~~D 94 (149)
.+..|+|....+...+.. ...+..++.-+..+. .+.+..|.-++| ..++.... ....+..+|..+-
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc----pR~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC----PRPEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC----CchhHHHHHHHhc
Confidence 466788877776665543 222244444444433 233344554444 44443332 2356899999999
Q ss_pred cCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhcccCC----CCceeHHHHHHHHhc
Q 031999 95 KDQNGFISAAELRHVMTNL----------GEKLTDEEVDEMIREADVDG----DGQINYEEFVKVMMA 148 (149)
Q Consensus 95 ~~~~g~it~~e~~~~~~~~----------~~~l~~~~~~~l~~~~d~~~----dg~i~~~ef~~~~~~ 148 (149)
.++.-++|.++|..++..- -+...+..++.|++.+..|. +|.+|-+.|+.++++
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8888999999999999652 23467899999999998774 789999999999875
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.79 E-value=0.019 Score=45.15 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHH
Q 031999 64 IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140 (149)
Q Consensus 64 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ 140 (149)
|+|..|...+......+.....+..+|...|.+++|.||..+|...+..+...-..+.+.-+++.+|++++ ....+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 44444444443333333233445677777787777888877777777766443344455666777777666 54443
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.73 E-value=0.1 Score=34.18 Aligned_cols=60 Identities=23% Similarity=0.500 Sum_probs=43.0
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNLG---EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~~---~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..|..|-..+...++...|..+|+..+ ..++...+.-+|..+-..+...|+|++|..+|.
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344444545556688999999998865 357888899999987777767799999988773
No 120
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.66 E-value=0.028 Score=43.79 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=57.4
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
.+.-|..+|.|+.|+++.++..++|+..+..++.+...+++...|.+-.|.+...||.+++.+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 455699999999999999999999999988899999999999999999999999999988753
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.08 E-value=0.16 Score=33.75 Aligned_cols=32 Identities=9% Similarity=0.310 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 117 LTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 117 l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
..++.++++|..++..+.+.+|+.|..+++.+
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 45788899999999887789999999888754
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.91 E-value=0.051 Score=39.33 Aligned_cols=59 Identities=22% Similarity=0.470 Sum_probs=44.2
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHhcccCCCCceeHHHHHHHH
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNL-----GEKLTDEE-----------VDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~-----~~~l~~~~-----------~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.+|...|.|++|++.-.|+...+..- .++=.+++ -+..++..|.|+|.-||.+||++..
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 46889999999999999998887542 22111111 1247889999999999999999864
No 123
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=0.12 Score=39.78 Aligned_cols=61 Identities=33% Similarity=0.524 Sum_probs=49.6
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
+....-|+.+-.|-.|+|+-.--+.++..- +|.-.++..||+..|.+.||.++..||+.++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 344556888888999999977666666543 4677899999999999999999999999876
No 124
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=94.56 E-value=0.11 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=41.4
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-------CCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccC
Q 031999 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDA-------DGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKD 96 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 96 (149)
-+.||.+||.++=+.+.+ +...+..++..|.. +..+.|+|+.|..++..++....+.+-.+.+|..|=..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 367888888776444432 33356666666632 33568999999999999988887888889999988543
No 125
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.06 E-value=0.084 Score=41.73 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHH
Q 031999 48 ELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAEL 106 (149)
Q Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~ 106 (149)
-...+|...|.+++|.++|.+++..+..... ....+.++.+|+.+|.+++ ...+++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3577899999999999999999998865433 3456789999999999999 8888887
No 126
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.04 E-value=0.12 Score=44.69 Aligned_cols=57 Identities=28% Similarity=0.556 Sum_probs=49.0
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.|+.||.||.|.|++.+|..++.... .-+..+++-++.....+.+...+|.+|++-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 38889999999999999999887543 3578889999999988888899999999765
No 127
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.00 E-value=0.21 Score=41.22 Aligned_cols=64 Identities=23% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD-----EEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~-----~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
..++..|..+|....|.++.+++.+++-.+|+..-. .++..++...|.+.-|.+++.+|.+.|.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 457889999999999999999999999999987653 3455677888888889999999998774
No 128
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.78 E-value=0.91 Score=29.70 Aligned_cols=62 Identities=24% Similarity=0.456 Sum_probs=45.0
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 14 KEAFSLFDKDGDGCITTKELGTVMRSLG---QNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 14 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
-..|..+-..+...++...|..+++..+ ...+...+.-+|..+-..+...|+|++|+.++..
T Consensus 5 F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 5 FKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 3344444455667899999999998643 4578888999999986666667999999988753
No 129
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=93.55 E-value=0.51 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHH
Q 031999 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 140 (149)
Q Consensus 99 g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ 140 (149)
..||.+||.++.+..+.++++.+++.++..+-.++-...+-+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~ 54 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQ 54 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHH
Confidence 358999999999999999999999998887766654433333
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.47 E-value=0.27 Score=38.75 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=51.2
Q ss_pred CcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH-HhcCCCCCcccHHHHHHHHH
Q 031999 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMIN-EVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 3 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~i~~~ef~~~~~ 74 (149)
.++++.-+.-+..+|..+|.+++|.++..|+..+....+..+ |....+. ..-.+..|.+++.-|+..|.
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p---W~~~~~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP---WTSSPYKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC---CCCCcccccceecccceeehhhHHHHHH
Confidence 367788889999999999999999999999999998776544 1100000 01124678999999998774
No 131
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.27 E-value=0.19 Score=43.56 Aligned_cols=56 Identities=27% Similarity=0.535 Sum_probs=47.5
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 031999 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNL 72 (149)
Q Consensus 16 ~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 72 (149)
.|+.+|+++.|-||..+|..++.... ..+..++.-++.....+.+...+|++|+.-
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 47788999999999999999987543 467778888888888888889999999864
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=92.64 E-value=2.5 Score=33.94 Aligned_cols=87 Identities=9% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCC-CcHHHHHHHhhhh-------
Q 031999 24 GDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-DSEEELKEAFRVF------- 93 (149)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~------- 93 (149)
..|.++..+|..+.+.+.. ..+..++..+|..+.. +.+.++.++|..++....+.. ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888777643 3467899999999864 346899999999987655432 2334444444332
Q ss_pred ccCCCCcccHHHHHHHHH
Q 031999 94 DKDQNGFISAAELRHVMT 111 (149)
Q Consensus 94 D~~~~g~it~~e~~~~~~ 111 (149)
...+.+.++.+.|..+|-
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 112334589999999885
No 133
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.27 E-value=1.5 Score=26.03 Aligned_cols=62 Identities=18% Similarity=0.396 Sum_probs=34.0
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHH-------hCCC----CCHHHHHHHHHhcccCCCCceeHHHHHHHHhc
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTN-------LGEK----LTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~-------~~~~----l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~~ 148 (149)
++.+.+|..+ .|.+|.++..-|..+++. +|+. -.+.-++.+|...- ....|+-++|+.-|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 4567777777 577778887777766654 2221 14555666666552 3446888888877654
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=91.63 E-value=1.4 Score=34.95 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031999 45 TEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
+..++..+|..+.. ++.++.++|..++.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~ 49 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVS 49 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHH
Confidence 34445555554432 13455555554443
No 135
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.59 E-value=1.8 Score=25.65 Aligned_cols=62 Identities=23% Similarity=0.517 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHH-------cCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRS-------LGQN----PTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~-------~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
.++++.+|..+ .|++|.++...|..+|+. ++.. ..+.-+...|... .....|+.++|+..+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 35788899888 688999999999888763 2211 2333444444443 2344677777776653
No 136
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.03 E-value=0.27 Score=35.70 Aligned_cols=62 Identities=26% Similarity=0.488 Sum_probs=44.0
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHH-c--CCCCCHH--H-----------HHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 15 EAFSLFDKDGDGCITTKELGTVMRS-L--GQNPTEA--E-----------LQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 15 ~~f~~~D~~~~g~l~~~e~~~~l~~-~--~~~~~~~--~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
..|...|.|++|.++..++..++.. + .+.+.+. . -..++...|.|.+..|+.++|+......
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 4578889999999999998876542 1 1222221 1 2346778899999999999999876443
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.91 E-value=1.5 Score=34.96 Aligned_cols=63 Identities=21% Similarity=0.441 Sum_probs=31.1
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhccc-CCCCceeHHHHHHHHhc
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADV-DGDGQINYEEFVKVMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~--~l~~~~~~~l~~~~d~-~~dg~i~~~ef~~~~~~ 148 (149)
..+..+|..+-. ++.+|.++|..+|..... ..+.+.++.|+..+.. ...+.++++.|..+|++
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 345555555532 245666666665555431 2344455555554321 12344666666666543
No 138
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.80 E-value=3.7 Score=34.19 Aligned_cols=145 Identities=17% Similarity=0.254 Sum_probs=80.6
Q ss_pred CCHHHHHH-HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcH
Q 031999 5 LTDDQISE-FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 83 (149)
Q Consensus 5 ~~~~~~~~-~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 83 (149)
.++.++.. +++.+-..|...-..++..++...|.+.....+......---.-|..+.+.++|++|..+....+-.....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchh
Confidence 34556655 44555556766667799999999888776655443332111112234567899999988765443322111
Q ss_pred HHH--HHHhhhh--ccCCCCcccHHHHHHHHHHhCCCC--C-HHHHHHHHHhccc-----CCCCceeHHHHHHHHhcC
Q 031999 84 EEL--KEAFRVF--DKDQNGFISAAELRHVMTNLGEKL--T-DEEVDEMIREADV-----DGDGQINYEEFVKVMMAK 149 (149)
Q Consensus 84 ~~~--~~~f~~~--D~~~~g~it~~e~~~~~~~~~~~l--~-~~~~~~l~~~~d~-----~~dg~i~~~ef~~~~~~~ 149 (149)
..+ ...|-.= +.-.--.++..||+++|..-.... + -..++.++..+-. -...++...||+..+.++
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 111 1111111 111224689999999986543211 1 1134444444322 245689999999998764
No 139
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.40 E-value=2.2 Score=34.16 Aligned_cols=66 Identities=14% Similarity=0.322 Sum_probs=42.2
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHhccc-------CCCCceeHHHHHHHHhc
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-E--KLTDEEVDEMIREADV-------DGDGQINYEEFVKVMMA 148 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~-~--~l~~~~~~~l~~~~d~-------~~dg~i~~~ef~~~~~~ 148 (149)
+...++.+|..|-.++ +++|.++|.++|.... . ..+.+++..++..+-. -+.+.++.+.|..+|++
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3456778888875333 6788888888887765 2 2355666666654321 12345888888888765
No 140
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=87.61 E-value=2.9 Score=24.47 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC
Q 031999 45 TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
++.+....+...-.+ .-.|.+.+|...+....+.... .....+=..+|...+|+||.=||--..+=++
T Consensus 5 TK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 5 TKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred ccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 344455555444322 3457777777766555443322 2223333456777777777666654444333
No 141
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=87.21 E-value=3.8 Score=24.51 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=48.4
Q ss_pred CCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcc
Q 031999 24 GDGCITTKELGTVMRSLG--QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFI 101 (149)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 101 (149)
.+|.++..|...+-..+. +.++..+...++..+........++.+|...+............+..++...- -||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 368888888766544321 24566777777777765555667888888776544321112233444555543 33667
Q ss_pred cHHHHHH
Q 031999 102 SAAELRH 108 (149)
Q Consensus 102 t~~e~~~ 108 (149)
++.|-.-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07313 90 DEYEEHL 96 (104)
T ss_pred CHHHHHH
Confidence 7766543
No 142
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=86.86 E-value=9.5 Score=27.41 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHH----HHHhhhhccC
Q 031999 23 DGDGCITTKELGTVMRSLG--QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL----KEAFRVFDKD 96 (149)
Q Consensus 23 ~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~D~~ 96 (149)
..||.++..|.. ..+.+. ..++.+........+........++.+|+..+....... ...+ ..+|...=
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r--~~l~~~lL~~l~~vA~-- 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGR--FDLLRMFLEIQIQAAF-- 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH--
Confidence 457999999987 333321 344555533333444433444588999988776544322 1222 33333332
Q ss_pred CCCcccHHHHH---HHHHHhCCCCCHHHHHHHHHh
Q 031999 97 QNGFISAAELR---HVMTNLGEKLTDEEVDEMIRE 128 (149)
Q Consensus 97 ~~g~it~~e~~---~~~~~~~~~l~~~~~~~l~~~ 128 (149)
-||.++..|-. ++...+| +++.+...+...
T Consensus 142 ADG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~ 174 (267)
T PRK09430 142 ADGSLHPNERQVLYVIAEELG--FSRFQFDQLLRM 174 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 34778888833 3333344 778777777655
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=86.38 E-value=4.8 Score=31.83 Aligned_cols=66 Identities=5% Similarity=-0.041 Sum_probs=42.9
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhcccC--------CCCceeHHHHHHHHhc
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVM---TNLG--EKLTDEEVDEMIREADVD--------GDGQINYEEFVKVMMA 148 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~---~~~~--~~l~~~~~~~l~~~~d~~--------~dg~i~~~ef~~~~~~ 148 (149)
+.+.++.+|..+- .+.|..+.+.+.+++ .... ...+.++++.++..+-.. ..+.++.+.|.++|++
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4466777888773 566778888888777 4432 235666666666654321 2256888888888865
No 144
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=86.24 E-value=5 Score=23.61 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031999 63 TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
Q Consensus 63 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~ 126 (149)
.+++.+++.. ......++.++-..+-..+-. |+.+...|.+.|..++ ++.+++++.+
T Consensus 30 ~it~~dL~~~--GL~g~~~s~~rR~~l~~~L~i---Gy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIEL--GLIGGPDSKERREKLGEYLGI---GYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHC--CCCCCccHHHHHHHHHHHHCC---CCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 5888887663 455555666666677777765 7888888888888776 7777777654
No 145
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.60 E-value=2.9 Score=33.95 Aligned_cols=76 Identities=26% Similarity=0.486 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhcccCCCC
Q 031999 64 IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---G-----EKLTDEEVDEMIREADVDGDG 135 (149)
Q Consensus 64 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~---~-----~~l~~~~~~~l~~~~d~~~dg 135 (149)
+++++|. ......+.+++..|..+|. ++|.++.+++..++... + .+...+....++...|..+.|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 6777766 3334566777888888887 77888888877776542 1 123345556677778887777
Q ss_pred ceeHHHHHHHH
Q 031999 136 QINYEEFVKVM 146 (149)
Q Consensus 136 ~i~~~ef~~~~ 146 (149)
++.+..+.-.+
T Consensus 77 y~~~~~~~~ll 87 (646)
T KOG0039|consen 77 YITNEDLEILL 87 (646)
T ss_pred eeeecchhHHH
Confidence 77766554443
No 146
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=83.81 E-value=0.45 Score=32.39 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=39.4
Q ss_pred hhhhccC-CCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 90 FRVFDKD-QNGFISAAELRHVMTNLGEKLT-DEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 90 f~~~D~~-~~g~it~~e~~~~~~~~~~~l~-~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
|..+|.. -+|++|-.|+.-+=..+ |+ +.-+..+|+..|.|+||+|+.+|+-.++
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 6666754 67999998887532222 22 3456778999999999999999997665
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.76 E-value=5 Score=24.18 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhcc---CCCCcccHHHHHHHHHHh
Q 031999 45 TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDK---DQNGFISAAELRHVMTNL 113 (149)
Q Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~it~~e~~~~~~~~ 113 (149)
.+..++.-|..+.. +|.+....|-.++... +..+-+.++|..+-. -..+.||++|+..++..+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 45667777777654 8889999988876422 345666666655521 124668888888888765
No 148
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.48 E-value=2.1 Score=32.04 Aligned_cols=57 Identities=30% Similarity=0.485 Sum_probs=41.9
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH-hcccCCCCcee
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIR-EADVDGDGQIN 138 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~-~~d~~~dg~i~ 138 (149)
..+.++++|..+|..+.|+|+-.-++.++.+.+..+++...-.+++ .+|+..-|.|-
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil 364 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIIL 364 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEE
Confidence 3578999999999999999999999999999886566555444443 34444444443
No 149
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=0.84 Score=38.08 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
+++.....+.++|...|.+++|.|+..+....+.. ..++...+..+|...|..+.|.+++++|...+
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhh
Confidence 45667778888999999999999999998887655 55777889999999999999999999887654
No 150
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.78 E-value=7.9 Score=21.76 Aligned_cols=47 Identities=11% Similarity=0.277 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh
Q 031999 63 TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 63 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
.|+|.....++...+. ...+..+...|+.=+.+.|+++||.+-++.+
T Consensus 8 ~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4556655555554433 3445566666665567789999998888764
No 151
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=80.64 E-value=10 Score=22.92 Aligned_cols=62 Identities=15% Similarity=0.316 Sum_probs=40.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--C-CCCcccHHHHHHHHHhhc
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDA--D-GNGTIDFPEFLNLMARKM 77 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~--~-~~g~i~~~ef~~~~~~~~ 77 (149)
..+.+-|..+-+ +|.|+...|..++ |..-+.+-...+|..+-. + ....|+.+|...+|....
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 456667777766 7999999999875 666666666777766542 1 246899999988886553
No 152
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.56 E-value=13 Score=24.05 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH--cCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHH
Q 031999 7 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE 84 (149)
Q Consensus 7 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 84 (149)
++.++.-.-+|+.+..| |.++..|...+..- -.+.++..++..+......-+...+++..|...+.+.+......+
T Consensus 26 DP~lAa~~Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~e 103 (148)
T COG4103 26 DPRLAAAALLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLE 103 (148)
T ss_pred CHHHHHHHHHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34555544778887555 77887776554332 245678888888888877667778999999988876665433334
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHH
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~ 112 (149)
.+..+++..- -+|.++.-|-.-+++.
T Consensus 104 li~~mweIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 104 LIGLMWEIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HHHHHHHHHH--ccccccHHHHHHHHHH
Confidence 4555555543 4456666665555443
No 153
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=80.01 E-value=1.1 Score=28.36 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCCceeHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcc
Q 031999 24 GDGCITTKELGTVMRSL--GQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFI 101 (149)
Q Consensus 24 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 101 (149)
-||.++.+|...+...+ ....+......+...++......+++.+++..+...+........+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 46889988887765544 22334455556666655433345677777655433222111223345556665554 556
Q ss_pred cHHH
Q 031999 102 SAAE 105 (149)
Q Consensus 102 t~~e 105 (149)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 6555
No 154
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.02 E-value=2.2 Score=24.02 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=28.9
Q ss_pred HHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 110 MTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 110 ~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+..+...+++.....+...++.=..+.|+-+||++.+.
T Consensus 15 ~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 15 FSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 33344457788888888888777788999999998763
No 155
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=77.87 E-value=3.9 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMR 38 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~ 38 (149)
.++...|+.+ .++.++|+..+|+..|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3567788888 78889999999998753
No 156
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.66 E-value=3.3 Score=17.41 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=8.1
Q ss_pred cCCCCCceeHHHHHH
Q 031999 21 DKDGDGCITTKELGT 35 (149)
Q Consensus 21 D~~~~g~l~~~e~~~ 35 (149)
|.|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 445666666655543
No 157
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.25 E-value=5.4 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.607 Sum_probs=16.0
Q ss_pred hhhccCCCCcccHHHHHHHHHH
Q 031999 91 RVFDKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 91 ~~~D~~~~g~it~~e~~~~~~~ 112 (149)
+.||...+.+||.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3567777777888888777754
No 158
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.82 E-value=2.6 Score=31.65 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=47.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTE-AELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
..+++.|+.+|+..+|+|+..-++.++..+....++ ..+..+-..+|+..-|.|-..+|...+
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 568999999999999999999999998887744433 344444556777777777777776543
No 159
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.71 E-value=16 Score=28.13 Aligned_cols=101 Identities=24% Similarity=0.309 Sum_probs=61.6
Q ss_pred CCCCceeHHHHHHHHHH---cC-CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCC
Q 031999 23 DGDGCITTKELGTVMRS---LG-QNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98 (149)
Q Consensus 23 ~~~g~l~~~e~~~~l~~---~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 98 (149)
.++...+..||..+... .+ ..+..+-+..+.+.+|.+++|.|+.+|--.++..-+.-......-...|.- .+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 34445566666554321 22 345667788999999999999999988776665444433333334445544 34
Q ss_pred CcccHHHHHHHHHHhC-CCCC-HHHHHHHHH
Q 031999 99 GFISAAELRHVMTNLG-EKLT-DEEVDEMIR 127 (149)
Q Consensus 99 g~it~~e~~~~~~~~~-~~l~-~~~~~~l~~ 127 (149)
..||.+++=.+|+.-. .+.+ ++-++.++.
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 5699999888886632 2343 333444443
No 160
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=75.41 E-value=8.6 Score=24.70 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCcccHHHHHHHHHHhCC---------CCCHHHHHHHHHhcccCCCCc-eeHHHHHHHHh
Q 031999 97 QNGFISAAELRHVMTNLGE---------KLTDEEVDEMIREADVDGDGQ-INYEEFVKVMM 147 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~---------~l~~~~~~~l~~~~d~~~dg~-i~~~ef~~~~~ 147 (149)
|+-.||.+||.+....-.+ .+.+++++.+...+...+.+. +|..|-+++-+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~l 140 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAAL 140 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHhc
Confidence 5567999999999876322 368899999999998877664 99998887643
No 161
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.23 E-value=5.9 Score=23.64 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=41.8
Q ss_pred CCCcccHHHHHHHHHhhcCC-CCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc--cCCCCc
Q 031999 60 GNGTIDFPEFLNLMARKMKD-TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD--VDGDGQ 136 (149)
Q Consensus 60 ~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d--~~~dg~ 136 (149)
.||.|+-.|-..+-...... ..+.+....+...+........+..++.+.+.... ++++-..++..+- ...||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~l~~L~~vA~ADG~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF---DYEERLELVEALWEVAYADGE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCC
Confidence 48888888866543221111 22334455555666554555567777777665532 4444444443321 234566
Q ss_pred eeHHH
Q 031999 137 INYEE 141 (149)
Q Consensus 137 i~~~e 141 (149)
++-.|
T Consensus 89 ~~~~E 93 (104)
T cd07313 89 LDEYE 93 (104)
T ss_pred CCHHH
Confidence 66654
No 162
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.34 E-value=12 Score=22.95 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=38.8
Q ss_pred HhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh---C-CCCCHHHHHHHHHhcc
Q 031999 55 EVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---G-EKLTDEEVDEMIREAD 130 (149)
Q Consensus 55 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~---~-~~l~~~~~~~l~~~~d 130 (149)
.+|......|+.++...++..- .-|...|..-..-||+.-+.+++-.. | +.++..-+..++..++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 3566666778888866654321 12566665444447777666666442 2 2246666666666655
Q ss_pred cCCC
Q 031999 131 VDGD 134 (149)
Q Consensus 131 ~~~d 134 (149)
..-.
T Consensus 80 ~~~q 83 (107)
T TIGR01848 80 GSMQ 83 (107)
T ss_pred hhHH
Confidence 4433
No 163
>PLN02228 Phosphoinositide phospholipase C
Probab=72.91 E-value=35 Score=27.47 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=38.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcC--CCCCHHHHHHHHHHhcCC----CCCcccHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLG--QNPTEAELQDMINEVDAD----GNGTIDFPEFLNLM 73 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~ 73 (149)
.++..+|..+-. ++.++.++|..+|.... ...+...+..++..+... ..|.++.+.|..++
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 345556655543 35799999988887653 224556677777777543 23567777776653
No 164
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=72.78 E-value=3.7 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 44 PTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
++.++++.++..+-.|..|.+.|.+|+.-+
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 567889999999999999999999998754
No 165
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=72.18 E-value=6.9 Score=21.36 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q 031999 100 FISAAELRHVMTNLGEKLTDEEVDE 124 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l~~~~~~~ 124 (149)
.|+.++|..+++.+.+.++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3788888888888888888877765
No 166
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=71.94 E-value=4 Score=26.25 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc-------ccCCCCceeHHHHHHHHh
Q 031999 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA-------DVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~-------d~~~dg~i~~~ef~~~~~ 147 (149)
-+.||+.||.+.-+=+.+ +...+..+++.+ --++.+.|+|+.|..-|.
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 466888888876544322 122333333333 223455889988876663
No 167
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.84 E-value=22 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHh
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
+..+...||.+++|.|+.-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 5677899999999999999998877543
No 168
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=69.06 E-value=13 Score=22.27 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCCceeHHHHHHHHHHcCC-----CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCC
Q 031999 24 GDGCITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98 (149)
Q Consensus 24 ~~g~l~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 98 (149)
.+|.++..|...+.+.+.. ......+..++...-..- ...+..++...+....+.......+..++..... +
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--D 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--c
Confidence 3588888888776665431 223344444444432210 1234455555554443311112223444455443 3
Q ss_pred CcccHHHH
Q 031999 99 GFISAAEL 106 (149)
Q Consensus 99 g~it~~e~ 106 (149)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 56776653
No 169
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=68.53 E-value=40 Score=26.60 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhhcCCCCcHHHH
Q 031999 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG-TIDFPEFLNLMARKMKDTDSEEEL 86 (149)
Q Consensus 8 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~ 86 (149)
+..+....+|.+.=+.+...+|..++..++..++......+-...|. ++.+.. .+.|.+|+..+...+.. -..+
T Consensus 482 q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~--~~a~s~~gv~yl~v~~~i~sel~D---~d~v 556 (612)
T COG5069 482 QVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFG--DPAGSVSGVFYLDVLKGIHSELVD---YDLV 556 (612)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeecc--CCccccccchHHHHHHHHhhhhcC---hhhh
Confidence 44455667777665555566999999999999987766544333332 222222 57788877765443332 2345
Q ss_pred HHHhhhhccCCCCc---ccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCC-CCceeHHHHHHHHhc
Q 031999 87 KEAFRVFDKDQNGF---ISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-DGQINYEEFVKVMMA 148 (149)
Q Consensus 87 ~~~f~~~D~~~~g~---it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~-dg~i~~~ef~~~~~~ 148 (149)
...|..|+--.++. |+.+.++... ++ -.+ --.|.|+ ..++++--|+..+++
T Consensus 557 ~~~~~~f~diad~rsl~is~~ilRs~~-ai---------i~~-lpe~in~~r~~Ldvltfi~slma 611 (612)
T COG5069 557 TRGFTEFDDIADARSLAISSKILRSLG-AI---------IKF-LPEDINGVRPRLDVLTFIESLMA 611 (612)
T ss_pred hhhHHHHHHhhhhhhhhccHHHHHHhh-hH---------hee-chhhhcccCccchHHHHHHHHhc
Confidence 56666654322222 3333333221 10 011 1123333 446778888877764
No 170
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=67.65 E-value=27 Score=21.66 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=32.8
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
++-..-.-|+..+|.+++..+++..|..+.+..+..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 334444556667999999999999998888888888887774
No 171
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=67.49 E-value=15 Score=19.89 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 100 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.+|.+|+...+..++..++..++-.++.+.-
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4788888888888887788888887776654
No 172
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=67.27 E-value=6.5 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=13.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.|+||.+|+..+|... .++++.+..++..+.
T Consensus 19 ~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 19 KGYLTYDEINDALPED--DLDPEQIDEIYDTLE 49 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHH
Confidence 4556666666555422 245555555554443
No 173
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=66.76 E-value=20 Score=19.97 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031999 102 SAAELRHVMTNLGEKLTDEEVDEMIRE 128 (149)
Q Consensus 102 t~~e~~~~~~~~~~~l~~~~~~~l~~~ 128 (149)
+.+++..+++..+..+++.++..+++.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 334444444444444444444444444
No 174
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=66.75 E-value=27 Score=21.46 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=35.7
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV 131 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~ 131 (149)
.+|-.++.-++-..+..+++.++..+|..+.++.++.++..+..
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~G 48 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKG 48 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcC
Confidence 34555666777778999999999999988899999999887753
No 175
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=65.06 E-value=14 Score=25.04 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=22.7
Q ss_pred ccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 94 DKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 94 D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
..+.+|++..+|+.+.+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4678889999998888877676778888888886643
No 176
>PLN02222 phosphoinositide phospholipase C 2
Probab=63.02 E-value=58 Score=26.37 Aligned_cols=61 Identities=18% Similarity=0.379 Sum_probs=35.7
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCC--CCCHHHHHHHHHHhcC-CCCCcccHHHHHHHHH
Q 031999 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQ--NPTEAELQDMINEVDA-DGNGTIDFPEFLNLMA 74 (149)
Q Consensus 12 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~ 74 (149)
++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 45555555532 367777777777765432 2355566666666532 2345677777777664
No 177
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.96 E-value=23 Score=19.58 Aligned_cols=32 Identities=22% Similarity=0.464 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 99 g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
-.|+.+-++.++..+|.+.++..++.+++.+.
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 35899999999999999999999998887653
No 178
>PHA02105 hypothetical protein
Probab=62.94 E-value=21 Score=19.19 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHh---CCCCCHHHHHHHHHhcccCCCC--ceeHHHHHHHH
Q 031999 101 ISAAELRHVMTNL---GEKLTDEEVDEMIREADVDGDG--QINYEEFVKVM 146 (149)
Q Consensus 101 it~~e~~~~~~~~---~~~l~~~~~~~l~~~~d~~~dg--~i~~~ef~~~~ 146 (149)
+|++|+..++..- ..++..+-+..+-.-+..-+-. ++||+||-..|
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 6777777776542 2345555555554444444333 46888886544
No 179
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.70 E-value=26 Score=19.68 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 031999 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 57 (149)
+-.|+.+-++..+.+.|.+|++..+..+++..-
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 467899999999999999999999998887753
No 180
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=60.34 E-value=27 Score=23.54 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=21.6
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031999 95 KDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (149)
Q Consensus 95 ~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~ 129 (149)
.|.+|++..+++.+.++.-+..++.+++.+++..-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 45666777777776665444456666666666543
No 181
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=60.28 E-value=17 Score=20.03 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=26.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCC
Q 031999 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~ 133 (149)
.++.++..++.+.+...|..++++-+..-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3456788888887777777777777777777766543
No 182
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=60.07 E-value=13 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=6.8
Q ss_pred CCcccHHHHHHHH
Q 031999 61 NGTIDFPEFLNLM 73 (149)
Q Consensus 61 ~g~i~~~ef~~~~ 73 (149)
.|+|.-+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555555443
No 183
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=59.86 E-value=16 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcccC
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVD 132 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~ 132 (149)
.|+++++.+...+...++++++..++..++.-
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 46777777766666677888888888887753
No 184
>PRK00523 hypothetical protein; Provisional
Probab=58.51 E-value=31 Score=19.53 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 031999 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEV 56 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
+-.|+.+-++..+.+.|.+|++..+..+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 46788888999999999999999999888876
No 185
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=58.42 E-value=33 Score=19.54 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=17.0
Q ss_pred cccHHHHHHHHHhhcCCCCcHHHHHHHhhhh
Q 031999 63 TIDFPEFLNLMARKMKDTDSEEELKEAFRVF 93 (149)
Q Consensus 63 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 93 (149)
..+|++|...+............++.-+..+
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l 56 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSL 56 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhh
Confidence 5689998887765544433333333333333
No 186
>PLN02230 phosphoinositide phospholipase C 4
Probab=58.13 E-value=78 Score=25.80 Aligned_cols=63 Identities=13% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC---CCCHHHHHHHHHHhcC-------CCCCcccHHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ---NPTEAELQDMINEVDA-------DGNGTIDFPEFLNLMA 74 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~ 74 (149)
.++..+|..+..++ +.++.++|..+|..... ..+...+..++..+-. -..+.++.+.|..++.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 45777787775444 79999999999987542 2345555665554321 1234699999998774
No 187
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=57.81 E-value=42 Score=20.65 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=31.6
Q ss_pred hhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 90 FRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 90 f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
+-..-..|+..+|.+++..+++..|..+.+..+..+++.+.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 33444556667999999999999998888877777777664
No 188
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=56.45 E-value=35 Score=25.44 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
..|.||++|=.+.++......+++.++.+++.++ ||-+||.+.+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3466666666666655433344556666666655 3345665543
No 189
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=55.64 E-value=42 Score=19.95 Aligned_cols=31 Identities=13% Similarity=0.383 Sum_probs=23.3
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCC
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~ 116 (149)
.+.+.....-.|.-+|+.+++..+++.++..
T Consensus 57 ~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 57 AEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 4455555666788889999999999887753
No 190
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=55.36 E-value=16 Score=17.08 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=11.4
Q ss_pred CCcccHHHHHHHHHHh
Q 031999 98 NGFISAAELRHVMTNL 113 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~ 113 (149)
.|.|+++|+..+...+
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888888776553
No 191
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=55.02 E-value=48 Score=20.43 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=41.3
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 031999 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71 (149)
Q Consensus 14 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 71 (149)
-..|.+++..++...+..++..+|..+|.....+.+..++..+. |+ +.+|.++
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 34566667777778899999999999999999999999888873 33 5666654
No 192
>COG1158 Rho Transcription termination factor [Transcription]
Probab=54.80 E-value=30 Score=26.09 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=39.7
Q ss_pred HHHhhhhccCCCCc------ccHHHHHHHHHH--hCCCCCHHH-HHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 87 KEAFRVFDKDQNGF------ISAAELRHVMTN--LGEKLTDEE-VDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 87 ~~~f~~~D~~~~g~------it~~e~~~~~~~--~~~~l~~~~-~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+.+|..+|.+++|+ ++++++..+|.- +-.++++.+ ++.++..+...+++ +||...|-
T Consensus 354 rRifPAIdi~kSGTRKEeLLl~~~~l~k~w~lRr~l~~md~~~a~e~li~klk~Tk~N----~eF~~~m~ 419 (422)
T COG1158 354 RRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIEFLIDKLKKTKTN----DEFLEQMN 419 (422)
T ss_pred cccccceecccCCcchHhhcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccccH----HHHHHHhh
Confidence 56899999999997 778899988743 333455544 45566776655543 68877764
No 193
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=54.67 E-value=30 Score=17.97 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCC
Q 031999 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~ 133 (149)
..|.||..+|+..+ .++-..+-.+++.+|..+
T Consensus 7 ~~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 7 KNGEITVAEFRDLL-----GLSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TTSSBEHHHHHHHH-----TS-HHHHHHHHHHHHHTT
T ss_pred cCCcCcHHHHHHHH-----CccHHHHHHHHHHHhccC
Confidence 36789999999876 267778888888888653
No 194
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=54.51 E-value=32 Score=19.26 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=26.6
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhcc
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNL----GEKLTDEEVDEMIREAD 130 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~----~~~l~~~~~~~l~~~~d 130 (149)
.+..+....+..-+--+-..+++.++..+ |...+++-+..+|+.++
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~FC 73 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNFC 73 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhC
Confidence 34555555554433336677888887664 55567777888888764
No 195
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.58 E-value=30 Score=17.64 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031999 97 QNGFIS-AAELRHVMTNLGEKLTDEEVDEMIRE 128 (149)
Q Consensus 97 ~~g~it-~~e~~~~~~~~~~~l~~~~~~~l~~~ 128 (149)
+.|.|+ ..++.+.|...|..++++.++.+++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 446665 44444445556777888888877764
No 196
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=52.34 E-value=30 Score=17.35 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhcC-C-CCCceeHHHHHHHHHH
Q 031999 9 QISEFKEAFSLFDK-D-GDGCITTKELGTVMRS 39 (149)
Q Consensus 9 ~~~~~~~~f~~~D~-~-~~g~l~~~e~~~~l~~ 39 (149)
-+..+-.+|+.+-. + ...+++..||..+|+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34556777877742 2 3568999999988764
No 197
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.67 E-value=11 Score=34.05 Aligned_cols=70 Identities=19% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC----CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ----NPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
+++.+++.+.++|..+|++..|+|...++..+++.+.. ..+.+. +.+.-.+....++.|++.+-+.++..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 56788899999999999999999999999999886532 222222 11222233456778999998877643
No 198
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=48.45 E-value=78 Score=23.85 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=42.7
Q ss_pred CcCCHHHHHH--HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 031999 3 DQLTDDQISE--FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76 (149)
Q Consensus 3 ~~~~~~~~~~--~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 76 (149)
++++.++--. +.-+...+|+.+.|.++......+|.-+-...-.+.+.-+++... +.+|.+.+-.|..++...
T Consensus 100 ~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 100 HQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred ccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 3444444433 333446678888888887777776665533344556666777764 446666555555555433
No 199
>PRK01844 hypothetical protein; Provisional
Probab=47.85 E-value=51 Score=18.65 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=27.9
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 031999 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEV 56 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
+-.|+.+-++..+.+.|.+|++..+..+++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 35788888999999999999999999888876
No 200
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=47.76 E-value=58 Score=19.22 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=39.9
Q ss_pred CCCceeHHHHHHH---HHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCC-Cc-HHHHHHHhhhhccCCC
Q 031999 24 GDGCITTKELGTV---MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-DS-EEELKEAFRVFDKDQN 98 (149)
Q Consensus 24 ~~g~l~~~e~~~~---l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~-~~~~~~~f~~~D~~~~ 98 (149)
-||.++..|...+ +..+. .+......+...+........++.+|...+....... .. ...+..++...-. |
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--D 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--D 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--c
Confidence 4688998886554 44432 2333333344433322222367788877665443211 11 2233444544433 4
Q ss_pred CcccHHHHH
Q 031999 99 GFISAAELR 107 (149)
Q Consensus 99 g~it~~e~~ 107 (149)
|.++..|-.
T Consensus 88 G~~~~~E~~ 96 (106)
T cd07316 88 GELSEAERE 96 (106)
T ss_pred CCCCHHHHH
Confidence 677777754
No 201
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=47.39 E-value=23 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=11.0
Q ss_pred hhhhccCCCCcccHHHHHHHHHHhC
Q 031999 90 FRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 90 f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
|..+--..-+.+|.++|+.+|..+.
T Consensus 63 fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 63 FSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred eeeccccccccccHHHHHHHHHHHH
Confidence 4333333334445555555444443
No 202
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.22 E-value=41 Score=20.91 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~l~~~~ 129 (149)
-|..|++.++..-+..++++++++|+.-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 47888999888888888888888887543
No 203
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=47.01 E-value=13 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVM 110 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~ 110 (149)
.....+|.-.|.|++|+|+.+|...++
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 346778999999999999999988754
No 204
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=46.87 E-value=81 Score=20.68 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=15.8
Q ss_pred cCCCCCcccHHHHHHHHHhhcC
Q 031999 57 DADGNGTIDFPEFLNLMARKMK 78 (149)
Q Consensus 57 d~~~~g~i~~~ef~~~~~~~~~ 78 (149)
+.+.++.|++..|..+++..++
T Consensus 93 ~~~~n~~i~~~~ff~~lQ~~lG 114 (175)
T PF04876_consen 93 DDSTNGLIDIGKFFDILQPKLG 114 (175)
T ss_pred cCCcccceeHHHHHHHHHHHhh
Confidence 3345778999999888765544
No 205
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=46.46 E-value=45 Score=20.56 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031999 102 SAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
Q Consensus 102 t~~e~~~~~~~~~~~l~~~~~~~l~~ 127 (149)
|++|++.++......+++++++.|+.
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 35555555555544555555555554
No 206
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=45.82 E-value=31 Score=16.23 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=12.9
Q ss_pred cccHHHHHHHHHHhCCCC
Q 031999 100 FISAAELRHVMTNLGEKL 117 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l 117 (149)
.++..|++++|+..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 367788888888887554
No 207
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=45.50 E-value=70 Score=19.54 Aligned_cols=30 Identities=10% Similarity=0.399 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
+|.+++..+++..|..+....+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999998888888888887763
No 208
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.33 E-value=50 Score=25.41 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHhcCCCCCcccHHHHH
Q 031999 44 PTEAELQDMINEVDADGNGTIDFPEFL 70 (149)
Q Consensus 44 ~~~~~~~~~~~~~d~~~~g~i~~~ef~ 70 (149)
+++..+.++|...|.+.+|.++-+||.
T Consensus 474 lpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 474 LPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred CchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 444444555555555555555555543
No 209
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=44.59 E-value=43 Score=16.89 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 103 AAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 103 ~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
.+|...++..+| .++.++...+..+.. ...++.++.++.-
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 356777788888 467788888877765 3345666666543
No 210
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=44.48 E-value=65 Score=18.90 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHH
Q 031999 99 GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142 (149)
Q Consensus 99 g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef 142 (149)
-.|...+|++.+.....--+..+...+=.-+|...+|+||.=||
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 34667777777766543334445556666667777777766555
No 211
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=42.44 E-value=1e+02 Score=20.50 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=29.6
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~ 128 (149)
....+..+++++-.++...++..+|.+.| .+|..+++++++..+..
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~ 128 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEK 128 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHH
Confidence 45678888888877777789999999865 45667899998876654
No 212
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.99 E-value=42 Score=25.81 Aligned_cols=54 Identities=30% Similarity=0.479 Sum_probs=37.4
Q ss_pred HHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHH
Q 031999 87 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
Q Consensus 87 ~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~ 143 (149)
..+|..+-. -+|+||-..-+..+. ..+++...+-++++..|.+.||.++-+||.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 445555532 346666444444332 335778889999999999999999999995
No 213
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=41.96 E-value=46 Score=17.49 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=16.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031999 97 QNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
Q Consensus 97 ~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~ 127 (149)
..|.|+.+||..=+...-..-+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 4566777776665544433344455555443
No 214
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.69 E-value=36 Score=17.24 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 031999 102 SAAELRHVMTNLGEKLTDEEV 122 (149)
Q Consensus 102 t~~e~~~~~~~~~~~l~~~~~ 122 (149)
+.+++..+-+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888888888887665
No 215
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=40.31 E-value=52 Score=19.03 Aligned_cols=40 Identities=10% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHH-hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 108 HVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 108 ~~~~~-~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.||.. .|-.++++..+.+-+.++....+.|+|+|.+.+-+
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44433 34456666666666666666667788888887654
No 216
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=40.19 E-value=1.1e+02 Score=20.41 Aligned_cols=55 Identities=16% Similarity=0.444 Sum_probs=32.0
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCC
Q 031999 29 TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98 (149)
Q Consensus 29 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 98 (149)
+..+...-|+..|.+....+...++..+-.++.|.+ |..|. .++.+...||++++
T Consensus 3 ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~~--------------~iknlm~~yd~dgd 57 (186)
T PF12995_consen 3 NSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNIQ--------------GIKNLMSQYDKDGD 57 (186)
T ss_pred ChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehHH--------------HHHHHHHhcCCCCc
Confidence 344555666777777777777666666666666543 22221 25566666766553
No 217
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=40.13 E-value=79 Score=18.77 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.3
Q ss_pred CCCCceeHH
Q 031999 132 DGDGQINYE 140 (149)
Q Consensus 132 ~~dg~i~~~ 140 (149)
.+.+.|...
T Consensus 69 ~~~~~Ip~~ 77 (90)
T PF02337_consen 69 QGPEKIPIQ 77 (90)
T ss_dssp CSTTTS-CH
T ss_pred hCCCCCChh
Confidence 334444433
No 218
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=40.08 E-value=96 Score=19.58 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHhhhhccCC--CCcccHHHHHHHHHHhC-------CCCCH-----------HHHHHHHHhcccCCCCceeHHHHHH
Q 031999 85 ELKEAFRVFDKDQ--NGFISAAELRHVMTNLG-------EKLTD-----------EEVDEMIREADVDGDGQINYEEFVK 144 (149)
Q Consensus 85 ~~~~~f~~~D~~~--~g~it~~e~~~~~~~~~-------~~l~~-----------~~~~~l~~~~d~~~dg~i~~~ef~~ 144 (149)
.+..+|.....++ +..++..++..++..+= +...+ =-+..++.-+|..+.|.|+--.|.-
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 4556666665543 35688888888776531 11111 1245678899999999999988876
Q ss_pred HHh
Q 031999 145 VMM 147 (149)
Q Consensus 145 ~~~ 147 (149)
.+.
T Consensus 122 aL~ 124 (127)
T PF09068_consen 122 ALI 124 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 219
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.04 E-value=2.5e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=50.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcC---------C-CCCHHHHHHHHHHhcCCC----CCcccHHHHHHHHHh
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLG---------Q-NPTEAELQDMINEVDADG----NGTIDFPEFLNLMAR 75 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~---------~-~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~~~~ 75 (149)
.++..+|..+-.++.-+++.++|..+|+.-. + ......+..+++.+.++. .|.++-+.|+.++..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 4577888888888888999999999987321 2 345567888999987765 589999999887653
No 220
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=40.04 E-value=43 Score=15.60 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHHhCCCC
Q 031999 100 FISAAELRHVMTNLGEKL 117 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l 117 (149)
.++..++++.++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788888888877543
No 221
>PHA02943 hypothetical protein; Provisional
Probab=39.73 E-value=1.1e+02 Score=20.22 Aligned_cols=110 Identities=20% Similarity=0.402 Sum_probs=68.5
Q ss_pred CCCcCCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCC------Cc-----ccHHHH
Q 031999 1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGN------GT-----IDFPEF 69 (149)
Q Consensus 1 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~------g~-----i~~~ef 69 (149)
|+...|+.-...+..+...+ ..|.-|..++.+.| ..+..++.-.+..+..++- |. ++-+.+
T Consensus 1 MPr~~sd~v~~R~~eILE~L---k~G~~TtseIAkaL-----GlS~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day 72 (165)
T PHA02943 1 MPRGMSDTVHTRMIKTLRLL---ADGCKTTSRIANKL-----GVSHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAY 72 (165)
T ss_pred CCcchhHHHHHHHHHHHHHH---hcCCccHHHHHHHH-----CCCHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHH
Confidence 55566777777888888887 66888888887766 3566666666655544332 21 222333
Q ss_pred HHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc-ccCC
Q 031999 70 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA-DVDG 133 (149)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~-d~~~ 133 (149)
.+.+. +-++.+....-.++-.+|++..+-+.+. .+.++..+|..+ +.|.
T Consensus 73 ~~~v~---------~~~Relwrlv~s~~~kfi~p~~l~~li~------kd~~a~~~~ak~v~v~~ 122 (165)
T PHA02943 73 TNLVF---------EIKRELWRLVCNSRLKFITPSRLLRLIA------KDTEAHNIFAKYVPVNS 122 (165)
T ss_pred HHHHH---------HHHHHHHHHHHhccccccChHHHHHHHH------hCHHHHHHHHHhcCccc
Confidence 33221 3356667777778888999988887653 344566666554 4443
No 222
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.44 E-value=85 Score=23.42 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHH--HcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHH
Q 031999 33 LGTVMR--SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM 110 (149)
Q Consensus 33 ~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~ 110 (149)
|...+. .+|.......+.... ..|.||.+|-+..+.. .....+.+.++.+++.++ ||.+||.+++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~I------R~G~itReeal~~v~~-~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDI------RSGRITREEAIELVKE-YDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHH------HcCCCCHHHHHHHHHH-hcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 444443 356655444443322 3788999998887765 344445678999999999 8899998765
No 223
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=39.14 E-value=64 Score=17.47 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~l 125 (149)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3578888888888888888888763
No 224
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.75 E-value=26 Score=31.81 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=45.9
Q ss_pred cHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 82 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT---DEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~---~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
+-+...++...||.+.+|+|...++...++.+.+++. +..-+.+.-.+-.+.+|.|++..-+.++
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFAL 1482 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHH
Confidence 3467788999999999999999999999998765431 1111333333455677788887766655
No 225
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=38.07 E-value=73 Score=18.67 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHH
Q 031999 102 SAAELRHVMTNLGEKLTDEEVDE 124 (149)
Q Consensus 102 t~~e~~~~~~~~~~~l~~~~~~~ 124 (149)
|.+++..+.+-....++++++..
T Consensus 2 ~~~~v~~lA~La~L~l~eee~~~ 24 (93)
T TIGR00135 2 SDEEVKHLAKLARLELSEEEAES 24 (93)
T ss_pred CHHHHHHHHHHhCCCCCHHHHHH
Confidence 44455544433334455544433
No 226
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=36.53 E-value=95 Score=24.86 Aligned_cols=47 Identities=13% Similarity=0.406 Sum_probs=36.9
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccC
Q 031999 86 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD 132 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~ 132 (149)
++.+-...+..|.|.++.+|..++|..+.+.=...++++++++...|
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 34556677888999999999999999998766666777887776655
No 227
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=36.33 E-value=62 Score=18.81 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCc--ccHHHHHHHHH
Q 031999 62 GTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGF--ISAAELRHVMT 111 (149)
Q Consensus 62 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--it~~e~~~~~~ 111 (149)
..++|.+.+..+...+... --.+|.+-|.+|+.. -|-+|++.++.
T Consensus 21 ~~L~F~DvL~~I~~vlp~a-----T~tAFeYEDE~gDRITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEA-----TTTAFEYEDEDGDRITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhcccc-----cccceeeccccCCeeEecchHHHHHHHH
Confidence 4699999999887776543 345799999888753 23566666654
No 228
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=36.25 E-value=1.2e+02 Score=19.63 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHh----------cccCCCCceeHHHHHHH
Q 031999 102 SAAELRHVMTNLGEKLTDEEVDEMIRE----------ADVDGDGQINYEEFVKV 145 (149)
Q Consensus 102 t~~e~~~~~~~~~~~l~~~~~~~l~~~----------~d~~~dg~i~~~ef~~~ 145 (149)
...=+.+-++.+|..++++++..++.. +=.+..|..+...+.+.
T Consensus 91 ~~~ll~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 91 QNILLEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 333344455566767777777666611 11345777777666543
No 229
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=36.02 E-value=87 Score=17.91 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcccCC-CCceeHHHHHHH
Q 031999 103 AAELRHVMTNLGEKLTDEEVDEMIREADVDG-DGQINYEEFVKV 145 (149)
Q Consensus 103 ~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~-dg~i~~~ef~~~ 145 (149)
.+++.+.|. |.+.+.+.+.+.+...+.+. -|.++-+|++++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~ 85 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIEL 85 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHh
Confidence 344444442 44455666666666665432 235566666554
No 230
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=35.95 E-value=1.1e+02 Score=19.01 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=28.0
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 95 KDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 95 ~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.-++..+|.+++..+++..|..+....+..+++.+.
T Consensus 12 l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 12 LGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred hcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 345566999999999999998777777777777664
No 231
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=35.73 E-value=59 Score=18.75 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 031999 105 ELRHVMTNLGEKLTDEEVDEM 125 (149)
Q Consensus 105 e~~~~~~~~~~~l~~~~~~~l 125 (149)
|+..+++.+|.++++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 566678889999988876654
No 232
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=35.48 E-value=95 Score=18.18 Aligned_cols=46 Identities=4% Similarity=0.255 Sum_probs=19.4
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 031999 28 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 74 (149)
Q Consensus 28 l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 74 (149)
++..+|..++..+...+-.+.-..+.+..-.... .++-.+...++.
T Consensus 5 m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~-~~T~~Qv~~il~ 50 (95)
T PF14771_consen 5 MSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNN-CFTCAQVKQILS 50 (95)
T ss_pred CCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCC-ceeHHHHHHHHH
Confidence 4445555555555433333332233333322211 455555555443
No 233
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=35.45 E-value=96 Score=18.22 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=22.4
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 031999 27 CITTKELGTVMRSLGQNPTEAELQDMINEVDA 58 (149)
Q Consensus 27 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 58 (149)
.+|..||...-++.+.+.+..++..+...+-.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~ 45 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRG 45 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 46777777777777777777777776666643
No 234
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=35.33 E-value=1.1e+02 Score=18.95 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHH
Q 031999 15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 71 (149)
Q Consensus 15 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 71 (149)
..|..+-..++..+|..++..+|...|......++..+...+. ..+.++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3344444566677899999999999998888888888887773 245666554
No 235
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=35.29 E-value=12 Score=17.25 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHhcccCCCCceeH
Q 031999 123 DEMIREADVDGDGQINY 139 (149)
Q Consensus 123 ~~l~~~~d~~~dg~i~~ 139 (149)
+.++++-|.+++-.|+.
T Consensus 2 ~~LL~qEDTDgn~qITI 18 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITI 18 (30)
T ss_pred hhHhhccccCCCcEEEE
Confidence 34566666666666654
No 236
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=35.10 E-value=1.2e+02 Score=19.17 Aligned_cols=13 Identities=0% Similarity=0.284 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHh
Q 031999 101 ISAAELRHVMTNL 113 (149)
Q Consensus 101 it~~e~~~~~~~~ 113 (149)
+|..+|.=.+.++
T Consensus 68 LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 68 LTRSQIDYLYNRV 80 (122)
T ss_pred cCHHHHHHHHHHH
Confidence 5555555554443
No 237
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=34.63 E-value=1.1e+02 Score=25.50 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
-..+.+|+..-+.+.-++..+.+... +.+++++..+..++...++.|+++.|..-.
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 34567888888777777777777653 578889999999988777779998887543
No 238
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=33.91 E-value=20 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCcccHHHHHHHHH
Q 031999 97 QNGFISAAELRHVMT 111 (149)
Q Consensus 97 ~~g~it~~e~~~~~~ 111 (149)
.+|.||++||..+=.
T Consensus 24 etG~iTPeEFV~AGD 38 (145)
T PF03986_consen 24 ETGVITPEEFVAAGD 38 (145)
T ss_dssp HHS---HHHHHHHHH
T ss_pred ccceeCHHHHHHhhh
Confidence 469999999998743
No 239
>PF13592 HTH_33: Winged helix-turn helix
Probab=33.82 E-value=79 Score=16.78 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=17.2
Q ss_pred CcccHHHHHHHHHH-hCCCCCHHHHHHHHHhcc
Q 031999 99 GFISAAELRHVMTN-LGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 99 g~it~~e~~~~~~~-~~~~l~~~~~~~l~~~~d 130 (149)
+..|..++..++.. +|..++..-+..++.++.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 34555555555543 455555555555555544
No 240
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=33.77 E-value=1e+02 Score=18.04 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCC
Q 031999 66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL 117 (149)
Q Consensus 66 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l 117 (149)
|++...++..++ ++-++.+.....-.+.-+|+.+++.-+++..|.++
T Consensus 36 y~e~~~~l~~~l-----~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 36 YDEVRNVLKSYL-----EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 555554444332 23455565555556777899999999998887543
No 241
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=33.15 E-value=1.4e+02 Score=22.41 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=25.3
Q ss_pred hhhhcCCCCCceeHHHHHHHHHHcCCCC----------CHHHHHHHHHHhcCC
Q 031999 17 FSLFDKDGDGCITTKELGTVMRSLGQNP----------TEAELQDMINEVDAD 59 (149)
Q Consensus 17 f~~~D~~~~g~l~~~e~~~~l~~~~~~~----------~~~~~~~~~~~~d~~ 59 (149)
|+.++.+..+.++..+-..+|..++.+. ....+..++......
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 4444445456788888888888775432 124556666655543
No 242
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=32.89 E-value=1.1e+02 Score=18.35 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHhC
Q 031999 101 ISAAELRHVMTNLG 114 (149)
Q Consensus 101 it~~e~~~~~~~~~ 114 (149)
+|.+|+..++...|
T Consensus 36 ~s~~eL~~~l~~~g 49 (105)
T cd03035 36 LDAATLERWLAKVG 49 (105)
T ss_pred CCHHHHHHHHHHhC
Confidence 56666666666555
No 243
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=32.79 E-value=1e+02 Score=18.05 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHH
Q 031999 101 ISAAELRHVMTNLGEKLTDEEVDE 124 (149)
Q Consensus 101 it~~e~~~~~~~~~~~l~~~~~~~ 124 (149)
|+.++++.+.+-....++++++..
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~ 26 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEK 26 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHH
Confidence 556666665554445566555444
No 244
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=32.11 E-value=93 Score=17.07 Aligned_cols=40 Identities=18% Similarity=0.455 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHhCCC--CCH---------HHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 102 SAAELRHVMTNLGEK--LTD---------EEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 102 t~~e~~~~~~~~~~~--l~~---------~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
|.-++++.++.+|.- +.+ .++.++.. .|-|+-++|..+.+
T Consensus 3 tlyDVqQLLK~fG~~IY~gdr~~DielM~~El~~Ly~------~~lidk~~y~~A~l 53 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYVGDRLWDIELMEIELKELYK------SGLIDKKEYLTAKL 53 (62)
T ss_dssp SHHHHHHHHHTTS-----S-HHHHHHHHHHHHHHHHH------TTSS-HHHHHHHHH
T ss_pred cHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 344677777777742 222 23333333 56788888877653
No 245
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.92 E-value=1.1e+02 Score=18.03 Aligned_cols=47 Identities=6% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.|.+|.++...+..+.+..-....++.++..+- .+ .=-|+.|+.++.
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~aF~~Fl~aLr 77 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EGWFSKFLQALR 77 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcHHHHHHHHHH
Confidence 456777766666665444456777788887777 33 345677777764
No 246
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=31.70 E-value=27 Score=22.46 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHh
Q 031999 101 ISAAELRHVMTNL 113 (149)
Q Consensus 101 it~~e~~~~~~~~ 113 (149)
||.+|++++..++
T Consensus 10 vTldevr~Av~~f 22 (140)
T PF13075_consen 10 VTLDEVRRAVHQF 22 (140)
T ss_pred ccHHHHHHHHHHH
Confidence 4555555555443
No 247
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=31.54 E-value=1.1e+02 Score=17.63 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=11.0
Q ss_pred CCceeHHHHHHHHHHc
Q 031999 25 DGCITTKELGTVMRSL 40 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~ 40 (149)
||.++..|...+.+.+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5888888876665443
No 248
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=31.25 E-value=1.3e+02 Score=21.22 Aligned_cols=45 Identities=16% Similarity=0.381 Sum_probs=30.1
Q ss_pred cHHHHHHHHHH----hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHH
Q 031999 102 SAAELRHVMTN----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146 (149)
Q Consensus 102 t~~e~~~~~~~----~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~ 146 (149)
+.+|++.+... .+..+++.+++.|...+..=++-.+++.+|.+-+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql 221 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQL 221 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77777766644 4666888888887776665455556667776543
No 249
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=30.68 E-value=1.4e+02 Score=19.63 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=23.6
Q ss_pred CCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCC--CcccHHHHHHHHHHh
Q 031999 59 DGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN--GFISAAELRHVMTNL 113 (149)
Q Consensus 59 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~--g~it~~e~~~~~~~~ 113 (149)
+.+|.|+|+.....-...... ....+.-.|..+.-.++ ..+|.+|+.+++.++
T Consensus 64 D~NGnidye~ls~~eqee~k~--~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eAL 118 (162)
T PF12207_consen 64 DKNGNIDYEKLSKEEQEEYKK--LTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEAL 118 (162)
T ss_dssp -TTS-B-GGGS-HHHHHHHHH--HHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHH
T ss_pred ccCCCcCHHhCCHHHHHHHHH--HHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHH
Confidence 567778888765432211100 01223445666544333 237888888887764
No 250
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.18 E-value=65 Score=14.69 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 031999 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRS 39 (149)
Q Consensus 8 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 39 (149)
+++..+..++.. |.||.+||...-..
T Consensus 3 ~~L~~L~~l~~~------G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 3 DRLEKLKELYDK------GEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHHHc------CCCCHHHHHHHHHH
Confidence 345555555543 88888888775443
No 251
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=29.81 E-value=1.4e+02 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=7.7
Q ss_pred CCCCceeHHHHHHHHHHcC
Q 031999 23 DGDGCITTKELGTVMRSLG 41 (149)
Q Consensus 23 ~~~g~l~~~e~~~~l~~~~ 41 (149)
||||++.+-=+..+|.+-|
T Consensus 127 DGNGRt~Rll~~l~L~~~g 145 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQG 145 (186)
T ss_pred CCCcHHHHHHHHHHHHHCC
Confidence 4444444433333333333
No 252
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.40 E-value=41 Score=21.58 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=16.7
Q ss_pred HHHhcccCCCCceeHHHHHHHHh
Q 031999 125 MIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 125 l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
+-..+.....|..||+||+..+.
T Consensus 77 i~~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHH
Confidence 33444556778999999998774
No 253
>PRK10945 gene expression modulator; Provisional
Probab=29.33 E-value=1.1e+02 Score=17.23 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=17.1
Q ss_pred CcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh
Q 031999 81 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
...+.++.+|...- ..++.+|+..+..+.
T Consensus 19 ss~eTLEkvie~~~----~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 19 QTIDTLERVIEKNK----YELSDDELAVFYSAA 47 (72)
T ss_pred CcHHHHHHHHHHhh----ccCCHHHHHHHHHHH
Confidence 34556666665432 346667777776654
No 254
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=29.26 E-value=1.2e+02 Score=17.43 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCC
Q 031999 60 GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 115 (149)
Q Consensus 60 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~ 115 (149)
..|.|+-+++-.+-. .....+.++.++....+ .|.....-|.++++...+
T Consensus 26 ~~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p 75 (82)
T cd08330 26 GKKVITQEQYSEVRA----EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEP 75 (82)
T ss_pred HCCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCh
Confidence 355677776554322 12345566666666553 455566666666655443
No 255
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=2e+02 Score=19.90 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=50.8
Q ss_pred CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCccc
Q 031999 23 DGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFIS 102 (149)
Q Consensus 23 ~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it 102 (149)
|=+|+||.++....+.. .....++..+.... -++.+++.+....+....... ..+.+.-+.+..-.+ =.
T Consensus 9 DFDGTITl~Ds~~~itd---tf~~~e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~s-~~Eile~llk~i~Id----p~ 77 (220)
T COG4359 9 DFDGTITLNDSNDYITD---TFGPGEWKALKDGV---LSKTISFRDGFGRMFGSIHSS-LEEILEFLLKDIKID----PG 77 (220)
T ss_pred cCCCceEecchhHHHHh---ccCchHHHHHHHHH---hhCceeHHHHHHHHHHhcCCC-HHHHHHHHHhhcccC----cc
Confidence 34588888877766543 22233444555444 356778777766554444332 244455444433332 24
Q ss_pred HHHHHHHHHHhCCCC------CHHHHHHHHHhc
Q 031999 103 AAELRHVMTNLGEKL------TDEEVDEMIREA 129 (149)
Q Consensus 103 ~~e~~~~~~~~~~~l------~~~~~~~l~~~~ 129 (149)
..||..+++.-+.+. .+.-+..+|..+
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~~lfe~i 110 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI 110 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence 567777776654321 234555555544
No 256
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.10 E-value=1e+02 Score=20.12 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHH
Q 031999 10 ISEFKEAFSLFDKDGDGCITTKELGTV 36 (149)
Q Consensus 10 ~~~~~~~f~~~D~~~~g~l~~~e~~~~ 36 (149)
+..+......+|.++.+++|..+++.+
T Consensus 68 Lq~L~~rL~~le~~rg~Y~TiSeLKT~ 94 (148)
T PF12486_consen 68 LQQLADRLNQLEEQRGKYMTISELKTA 94 (148)
T ss_pred HHHHHHHHHHHHHhcCCceeHHHHHHH
Confidence 334444445555555555666666554
No 257
>PTZ00015 histone H4; Provisional
Probab=29.10 E-value=1.4e+02 Score=18.18 Aligned_cols=69 Identities=7% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCC
Q 031999 43 NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116 (149)
Q Consensus 43 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~ 116 (149)
.++...+..+........-..--|++...++..++ ++-++.+.....-.+.-+|+.+++.-+++..|.+
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l-----~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFL-----ENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 34444555555544322222223455444443332 2345556555555677889999999999887754
No 258
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=28.93 E-value=1.5e+02 Score=18.30 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=40.6
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 031999 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75 (149)
Q Consensus 16 ~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 75 (149)
.|..+-..++..+|.+++..+|...|......++..+...+. ..+..+.+..-..
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHh
Confidence 444455567778999999999999998888888888887773 2556776665433
No 259
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=28.81 E-value=1.3e+02 Score=17.66 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhh
Q 031999 60 GNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVF 93 (149)
Q Consensus 60 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 93 (149)
++|.|+-+++-.+.. .+.+.+++++++...
T Consensus 26 ~n~~it~E~y~~V~a----~~T~qdkmRkLld~v 55 (85)
T cd08324 26 KNDYFSTEDAEIVCA----CPTQPDKVRKILDLV 55 (85)
T ss_pred ccCCccHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 345555555543321 123445555555553
No 260
>PF14164 YqzH: YqzH-like protein
Probab=28.38 E-value=1.1e+02 Score=16.86 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=21.2
Q ss_pred HHHHhhhhccC-CCCcccHHHHHHHHHHh
Q 031999 86 LKEAFRVFDKD-QNGFISAAELRHVMTNL 113 (149)
Q Consensus 86 ~~~~f~~~D~~-~~g~it~~e~~~~~~~~ 113 (149)
++.+|+.|..| ....+|..|++.+++.+
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 56788888766 66778888888877665
No 261
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=28.35 E-value=1.1e+02 Score=16.62 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=7.3
Q ss_pred cccHHHHHHHHHHhC
Q 031999 100 FISAAELRHVMTNLG 114 (149)
Q Consensus 100 ~it~~e~~~~~~~~~ 114 (149)
.++...+++++..-|
T Consensus 44 ~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 44 KVDPSKLKEWLDSQG 58 (64)
T ss_pred eeCHHHHHHHHHHCC
Confidence 345555555554443
No 262
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=28.23 E-value=57 Score=22.53 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.9
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHh
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
+..-+|.|++|.++.+|+..+-...
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3456889999999999999876543
No 263
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.12 E-value=1.3e+02 Score=17.59 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHH
Q 031999 83 EEELKEAFRVFDKDQNGFISAAELRHVMT 111 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~it~~e~~~~~~ 111 (149)
.++.+.++..+= ..|.-....|..+|.
T Consensus 50 ~~k~~~Lld~L~--~RG~~AF~~F~~aL~ 76 (90)
T cd08332 50 FSQNVALLNLLP--KRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHHHH--HhChhHHHHHHHHHH
Confidence 344444444443 233334444444443
No 264
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=28.11 E-value=93 Score=15.83 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=26.1
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031999 85 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 128 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~ 128 (149)
.+...|.. +.+.+.+++..+-..+| ++..++...|..
T Consensus 14 ~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 14 ELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 34555555 45788888888888877 777788776653
No 265
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=27.90 E-value=3.3e+02 Score=23.18 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 031999 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (149)
Q Consensus 14 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 57 (149)
.=++..||+.++|.|..-+|+..+-.+-..+.++....+|....
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA 516 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVA 516 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHc
Confidence 33457778888888877777776655544455555556666664
No 266
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=27.34 E-value=1.3e+02 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhccCCC-CcccHHHHHH
Q 031999 83 EEELKEAFRVFDKDQN-GFISAAELRH 108 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~-g~it~~e~~~ 108 (149)
.+.++++++ +-..+. +.++++||..
T Consensus 31 ~~~ar~Lve-LGyr~~g~vl~~eeF~~ 56 (233)
T PF14713_consen 31 EELARQLVE-LGYRGTGEVLSREEFEA 56 (233)
T ss_pred HHHHHHHHH-cCCCCCCcccCHHHHHH
Confidence 344555555 333333 4577777743
No 267
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=27.24 E-value=1.4e+02 Score=17.73 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=4.2
Q ss_pred eeHHHHHHHH
Q 031999 137 INYEEFVKVM 146 (149)
Q Consensus 137 i~~~ef~~~~ 146 (149)
-.|..|++++
T Consensus 67 ~AF~~F~~aL 76 (94)
T cd08327 67 KAFHAFLDSL 76 (94)
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 268
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=27.19 E-value=1.4e+02 Score=20.81 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.9
Q ss_pred cCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 95 KDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 95 ~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.|..|+...+++...++..+..++.+.+..+++.-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 578899999999999999888899988888887654
No 269
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=26.66 E-value=98 Score=16.94 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHh
Q 031999 117 LTDEEVDEMIRE 128 (149)
Q Consensus 117 l~~~~~~~l~~~ 128 (149)
.+++.+..++..
T Consensus 30 ~~~evI~~ai~~ 41 (73)
T TIGR01446 30 NSPELIKEALKE 41 (73)
T ss_pred CCHHHHHHHHHH
Confidence 445555555554
No 270
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=26.43 E-value=1.8e+02 Score=18.43 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=8.8
Q ss_pred ccHHHHHHHHHHhC
Q 031999 101 ISAAELRHVMTNLG 114 (149)
Q Consensus 101 it~~e~~~~~~~~~ 114 (149)
++.+|+..++...|
T Consensus 37 ~s~~eL~~~l~~~~ 50 (132)
T PRK13344 37 LTKEEILAILTKTE 50 (132)
T ss_pred CCHHHHHHHHHHhC
Confidence 56666666666654
No 271
>PLN00035 histone H4; Provisional
Probab=26.15 E-value=1.6e+02 Score=17.95 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHh
Q 031999 34 GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
...++..-..++...+..+........-..--|++...++..++ ++-++.+..+..--+.-+|+.+++.-+++..
T Consensus 20 ~k~~~d~i~~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l-----~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~ 94 (103)
T PLN00035 20 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL-----ENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
T ss_pred HHHHHhhhccCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence 33444333335666666666665433222333555555544432 2345666666665677889999999999888
Q ss_pred CCC
Q 031999 114 GEK 116 (149)
Q Consensus 114 ~~~ 116 (149)
|.+
T Consensus 95 g~~ 97 (103)
T PLN00035 95 GRT 97 (103)
T ss_pred CCc
Confidence 754
No 272
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=25.86 E-value=1.5e+02 Score=17.75 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 031999 100 FISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l~~~~~~~l 125 (149)
.|+.++++++-+-....+++++++.+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~ 27 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKF 27 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHH
Confidence 35566666654443344555555543
No 273
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=25.76 E-value=57 Score=19.78 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=10.6
Q ss_pred CCcccHHHHHHHHHHhC
Q 031999 98 NGFISAAELRHVMTNLG 114 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~ 114 (149)
+|.+++++|.+.|+.+.
T Consensus 4 d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 4 DGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp T----HHHHHHHHHHS-
T ss_pred CCccCHHHHHHHHHhCC
Confidence 58899999999998864
No 274
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=25.51 E-value=1.8e+02 Score=18.16 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=4.9
Q ss_pred ccHHHHHHHHH
Q 031999 101 ISAAELRHVMT 111 (149)
Q Consensus 101 it~~e~~~~~~ 111 (149)
+++.++..++.
T Consensus 45 ~t~~di~~vl~ 55 (124)
T PF14848_consen 45 LTRADIEAVLN 55 (124)
T ss_pred CCHHHHHHHHH
Confidence 34444444443
No 275
>PHA02986 hypothetical protein; Provisional
Probab=25.51 E-value=1.9e+02 Score=18.38 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 61 NGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 61 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
+..|+++-|...+..++.. .+...+.++|++.++-.+...+.++...-++..+|
T Consensus 24 ~nei~~k~FsNLCkefi~~----------------~k~~~~ik~~IK~ill~iP~sm~~~~W~PIanlcD 77 (141)
T PHA02986 24 DNEISFKYFSNLCKEFISN----------------KKKTTLIKEEIKKILLEIPDSMISQVWYPIANLCD 77 (141)
T ss_pred cchhhHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHhCChhHHHHHHHHHHhhcc
Confidence 4467777777766544321 23334667777777766655455544444444444
No 276
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=25.06 E-value=85 Score=14.98 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHHhCCC
Q 031999 100 FISAAELRHVMTNLGEK 116 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~ 116 (149)
.++..+++.++...|+.
T Consensus 3 sltV~~Lk~iL~~~~I~ 19 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIE 19 (35)
T ss_dssp T--SHHHHHHHHHHT--
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46777888888777653
No 277
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.02 E-value=2.5e+02 Score=22.49 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=40.4
Q ss_pred HHhhhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh---ccc-----CCCCceeHHHHHHHHh
Q 031999 88 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE---ADV-----DGDGQINYEEFVKVMM 147 (149)
Q Consensus 88 ~~f~~~D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~---~d~-----~~dg~i~~~ef~~~~~ 147 (149)
.+|..|-.-.++.++.--|..+|+..|..-++.-+..++.. .|. ..-+.++.+-|.+++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 45777755556888888899999998876666566655543 232 2334578888887764
No 278
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=24.71 E-value=1.2e+02 Score=15.79 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHhccc
Q 031999 116 KLTDEEVDEMIREADV 131 (149)
Q Consensus 116 ~l~~~~~~~l~~~~d~ 131 (149)
.++++.+.+++..+|.
T Consensus 27 ~I~p~La~kVL~~FDk 42 (49)
T PF02268_consen 27 KITPQLAMKVLEQFDK 42 (49)
T ss_dssp SS-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5788888888888774
No 279
>PTZ00315 2'-phosphotransferase; Provisional
Probab=24.40 E-value=1.7e+02 Score=23.85 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=30.7
Q ss_pred ccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 94 DKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 94 D~~~~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
..|.+|++..+++.+....-+..++.++++.+++.-|
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 5678999999999998877666789999999887543
No 280
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=24.27 E-value=1.6e+02 Score=17.06 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.1
Q ss_pred hCCCCCHHHHHHHHHhcccCCCCceeHHHHHHHHh
Q 031999 113 LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147 (149)
Q Consensus 113 ~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef~~~~~ 147 (149)
.+.+++++..+.|...+-.++- ..++..+.++|.
T Consensus 44 an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 44 ANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred hCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 4678888888888887776666 777788877775
No 281
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=24.17 E-value=1.2e+02 Score=15.55 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=20.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031999 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~~~l~~~~~~~l~~ 127 (149)
+.+.+.++...+-..+| ++...+...|.
T Consensus 22 ~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 22 NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred hcccccccccccccccc--ccccccccCHH
Confidence 56788888888777776 77777776664
No 282
>PF09156 Anthrax-tox_M: Anthrax toxin lethal factor, middle domain; InterPro: IPR015239 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents the central domain found in the lethal factor protein of anthrax toxin.; PDB: 1PWV_B 1PWW_A 1PWQ_B 1PWP_B 1J7N_A 1JKY_A 1PWU_A 4DV8_A 1YQY_A 1ZXV_A ....
Probab=23.94 E-value=2.4e+02 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=8.4
Q ss_pred HHHHHhcccCCCCceeH
Q 031999 123 DEMIREADVDGDGQINY 139 (149)
Q Consensus 123 ~~l~~~~d~~~dg~i~~ 139 (149)
.+++.++..+..+.++-
T Consensus 91 kellnriqvdssnplse 107 (287)
T PF09156_consen 91 KELLNRIQVDSSNPLSE 107 (287)
T ss_dssp HHHHHCCSTTTTSS-TH
T ss_pred HHHHHHhhccCCCCccH
Confidence 34555555555555554
No 283
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=23.87 E-value=2.2e+02 Score=19.29 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=21.1
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 031999 21 DKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (149)
Q Consensus 21 D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 57 (149)
..+.+|+++.+++...++.-+...+.+.+..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3466799999998888776555667777777766544
No 284
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=23.43 E-value=37 Score=14.85 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=4.9
Q ss_pred cCCCCceeH
Q 031999 131 VDGDGQINY 139 (149)
Q Consensus 131 ~~~dg~i~~ 139 (149)
.+.||.++|
T Consensus 17 t~~dgtvsy 25 (27)
T PF04022_consen 17 TNQDGTVSY 25 (27)
T ss_pred eccCceEec
Confidence 355666554
No 285
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.39 E-value=2.6e+02 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=17.9
Q ss_pred HhhhhccCCCCcccHHHHHHHHHHhCC
Q 031999 89 AFRVFDKDQNGFISAAELRHVMTNLGE 115 (149)
Q Consensus 89 ~f~~~D~~~~g~it~~e~~~~~~~~~~ 115 (149)
+-..+- +|-.+++.+|++..++.+|+
T Consensus 60 ~q~~lG-~gfly~~~eEL~e~Lk~~g~ 85 (210)
T COG1059 60 AQNELG-DGFLYLSEEELREKLKEVGY 85 (210)
T ss_pred HHHHhc-cccccCCHHHHHHHHHHhcc
Confidence 334443 56666788888888888765
No 286
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=23.23 E-value=2.7e+02 Score=20.61 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC----CCHHHHHHHHHHhcCCCCCcccHHHHHHHHHhhc---
Q 031999 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN----PTEAELQDMINEVDADGNGTIDFPEFLNLMARKM--- 77 (149)
Q Consensus 5 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--- 77 (149)
..+.+++.+.+-|+.= .=.=.++..+...+|.++..+ ++...+ ..|+.+...++..|..+-.++.|....
T Consensus 214 tDPReLEaFAErFKQR--RIKLGVTQADVG~ALAnLKiPGVGsLSQSTI-CRFESLTLSHNNMiALKPILqaWLEeAE~a 290 (385)
T KOG1168|consen 214 TDPRELEAFAERFKQR--RIKLGVTQADVGKALANLKIPGVGSLSQSTI-CRFESLTLSHNNMIALKPILQAWLEEAEAA 290 (385)
T ss_pred CCHHHHHHHHHHHHhh--hhhhcccHHHHHHHHHhCcCCCcccccccce-eeeeeeccccCcchhhhHHHHHHHHHHHHH
Confidence 3567888888888641 112237888999999887543 333333 235566667888999999888875431
Q ss_pred -CCCCcHHHHHHHhhhhccCCC-Cccc---HHHHHHHHHHhCCCCCHHHHHHHHHhcccCCC
Q 031999 78 -KDTDSEEELKEAFRVFDKDQN-GFIS---AAELRHVMTNLGEKLTDEEVDEMIREADVDGD 134 (149)
Q Consensus 78 -~~~~~~~~~~~~f~~~D~~~~-g~it---~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~d 134 (149)
++......+..+|.--++.+. -.|- +.++..++ ++.+.-+.+.+..|.+.+|..++
T Consensus 291 ~keK~~~pd~~~l~~~~ekKRKRTSIAAPEKRsLEayF-avQPRPS~EkIAaIAekLDLKKN 351 (385)
T KOG1168|consen 291 MKEKDTKPDINELLPGGEKKRKRTSIAAPEKRSLEAYF-AVQPRPSGEKIAAIAEKLDLKKN 351 (385)
T ss_pred HHhhccCCchhhccCccccccccccccCcccccHHHHh-ccCCCCchhHHHHHHHhhhhhhc
Confidence 111112234455555454322 2233 34455544 33455677888899999887653
No 287
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=23.18 E-value=70 Score=25.10 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.7
Q ss_pred CCCCcccHHHHH-HHHHHhCCCCCHHHHHHHHHhcccCC
Q 031999 96 DQNGFISAAELR-HVMTNLGEKLTDEEVDEMIREADVDG 133 (149)
Q Consensus 96 ~~~g~it~~e~~-~~~~~~~~~l~~~~~~~l~~~~d~~~ 133 (149)
|=+|+||+.++. .+..-+|...+.--+.+++..++.|+
T Consensus 381 DiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNG 419 (580)
T COG5083 381 DIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNG 419 (580)
T ss_pred ecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCc
Confidence 345789998887 66666788888888889998888774
No 288
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=23.05 E-value=62 Score=15.83 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=8.8
Q ss_pred CCcccHHHHHHH
Q 031999 98 NGFISAAELRHV 109 (149)
Q Consensus 98 ~g~it~~e~~~~ 109 (149)
-|.||.+|+..+
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 367888888764
No 289
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=22.97 E-value=1.5e+02 Score=16.73 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=15.2
Q ss_pred CCcHHHHHHHhhhhccCCCCcccH-HHHHHHHHH
Q 031999 80 TDSEEELKEAFRVFDKDQNGFISA-AELRHVMTN 112 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~it~-~e~~~~~~~ 112 (149)
....+.++.+|...-.. ++. +|+..+..+
T Consensus 13 css~eTLEkv~e~~~y~----L~~~~e~~~f~~A 42 (71)
T PRK10391 13 ISSLESLEKLFDHLNYT----LTDDQEIINMYRA 42 (71)
T ss_pred cCcHHHHHHHHHHhhcc----cCCHHHHHHHHHH
Confidence 34556666666655322 332 566655544
No 290
>PF13551 HTH_29: Winged helix-turn helix
Probab=22.89 E-value=1.7e+02 Score=17.11 Aligned_cols=8 Identities=38% Similarity=0.360 Sum_probs=3.1
Q ss_pred eeHHHHHH
Q 031999 28 ITTKELGT 35 (149)
Q Consensus 28 l~~~e~~~ 35 (149)
.+...+..
T Consensus 81 ~t~~~l~~ 88 (112)
T PF13551_consen 81 WTLEELAE 88 (112)
T ss_pred ccHHHHHH
Confidence 33344433
No 291
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=22.53 E-value=3e+02 Score=19.67 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=11.4
Q ss_pred hhhhccCCCCcccHHHHHHHHHHh
Q 031999 90 FRVFDKDQNGFISAAELRHVMTNL 113 (149)
Q Consensus 90 f~~~D~~~~g~it~~e~~~~~~~~ 113 (149)
|..+-..|. .++-+++..+++.+
T Consensus 33 ~~~L~~~Gk-iLeg~~Ld~aL~~~ 55 (256)
T PF14932_consen 33 FEELQKSGK-ILEGEALDEALKTI 55 (256)
T ss_pred HHHHHHcCC-cCCHHHHHHHHHHc
Confidence 444434444 45555555555554
No 292
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=22.50 E-value=2e+02 Score=20.69 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcc----cCCCCceeHHHHHHH
Q 031999 100 FISAAELRHVMTN-----LGEKLTDEEVDEMIREAD----VDGDGQINYEEFVKV 145 (149)
Q Consensus 100 ~it~~e~~~~~~~-----~~~~l~~~~~~~l~~~~d----~~~dg~i~~~ef~~~ 145 (149)
.++..++..+|.- .|..++++++..+...+- ...++.||+..|++-
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 4678888887743 467788888877665432 234678999999764
No 293
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=22.46 E-value=1.7e+02 Score=19.81 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=6.1
Q ss_pred HHhcccCCCCceeHHHH
Q 031999 126 IREADVDGDGQINYEEF 142 (149)
Q Consensus 126 ~~~~d~~~dg~i~~~ef 142 (149)
+..+++-|-|.-+..|.
T Consensus 76 lQ~leP~GigAr~l~Ec 92 (194)
T PF04963_consen 76 LQSLEPAGIGARDLQEC 92 (194)
T ss_dssp HHTTSS--TTTS-TTHH
T ss_pred HHcCCCCccCcCCHHHH
Confidence 34444444444444443
No 294
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=22.36 E-value=87 Score=25.84 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCCCcccHHH-HHHHHHHhCCCCCHHHHHHHHHhcccCC
Q 031999 96 DQNGFISAAE-LRHVMTNLGEKLTDEEVDEMIREADVDG 133 (149)
Q Consensus 96 ~~~g~it~~e-~~~~~~~~~~~l~~~~~~~l~~~~d~~~ 133 (149)
|=+|+||+.+ |-++|-.+|...+..-+.+|+..+-.|+
T Consensus 536 DIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NG 574 (738)
T KOG2116|consen 536 DIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENG 574 (738)
T ss_pred cCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCC
Confidence 3446666554 4555555666666666666666655554
No 295
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=22.35 E-value=1.1e+02 Score=14.77 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=14.8
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcccC
Q 031999 108 HVMTNLGEKLTDEEVDEMIREADVD 132 (149)
Q Consensus 108 ~~~~~~~~~l~~~~~~~l~~~~d~~ 132 (149)
+.++.+-+.++.+.++..+...+.+
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 4445555667777777777665544
No 296
>PRK12559 transcriptional regulator Spx; Provisional
Probab=22.06 E-value=2.2e+02 Score=17.97 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=7.6
Q ss_pred ccHHHHHHHHHHh
Q 031999 101 ISAAELRHVMTNL 113 (149)
Q Consensus 101 it~~e~~~~~~~~ 113 (149)
++.+|+..++...
T Consensus 37 ~s~~el~~~l~~~ 49 (131)
T PRK12559 37 MTVDELKSILRLT 49 (131)
T ss_pred CCHHHHHHHHHHc
Confidence 5566666666554
No 297
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=21.99 E-value=69 Score=19.64 Aligned_cols=17 Identities=24% Similarity=0.692 Sum_probs=13.8
Q ss_pred CCcccHHHHHHHHHHhC
Q 031999 98 NGFISAAELRHVMTNLG 114 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~ 114 (149)
.|+|+.+||..++..++
T Consensus 27 ~~~is~~ef~~iI~~IN 43 (118)
T PF10256_consen 27 SGYISPEEFEEIINTIN 43 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 57799999999887754
No 298
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=21.85 E-value=1.2e+02 Score=20.60 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=10.7
Q ss_pred CCCCcccHHHHHHHHH
Q 031999 59 DGNGTIDFPEFLNLMA 74 (149)
Q Consensus 59 ~~~g~i~~~ef~~~~~ 74 (149)
+-||.|+-.+....+.
T Consensus 5 DFDgTit~~d~~~~~~ 20 (214)
T TIGR03333 5 DFDGTITNNDNIISIM 20 (214)
T ss_pred ccCCCCCcchhHHHHH
Confidence 3578888888754433
No 299
>PLN02223 phosphoinositide phospholipase C
Probab=21.68 E-value=4.4e+02 Score=21.38 Aligned_cols=63 Identities=6% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHH---HHc-C-CCCCHHHHHHHHHHhcCC--------CCCcccHHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVM---RSL-G-QNPTEAELQDMINEVDAD--------GNGTIDFPEFLNLMA 74 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~~~ 74 (149)
..+..+|..+. .++|..+.+.+..+| ... + ...+.+.++.++..+-.. ..+.++.+.|..++.
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45677777773 667899999998887 332 2 245566666666654321 125699999998874
No 300
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=1.5e+02 Score=19.91 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhhcCCCCcHHHHHHHhhhhccCCCCcccHHHHHHHHHHhC
Q 031999 64 IDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 114 (149)
Q Consensus 64 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~it~~e~~~~~~~~~ 114 (149)
=....|+..+....... +..+.+-+.++.+....=|+++|.+++..+.
T Consensus 98 ~~~~sFi~~~s~~yPC~---eCa~dl~K~l~~nppq~~SRe~~~~W~C~vH 145 (177)
T KOG3355|consen 98 DDMRSFIHLFSKFYPCG---ECAKDLRKILRKNPPQTSSREAFTQWLCHVH 145 (177)
T ss_pred HHHHHHHHHhhhhcchH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 34455666665555443 4555555666667778889999999997753
No 301
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.25 E-value=37 Score=19.51 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=17.7
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 031999 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEV 56 (149)
Q Consensus 25 ~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
+|.-+..+|..+|+.+|...-+.-++-+++.+
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSM 69 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSM 69 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34444456666666666555555555555554
No 302
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.09 E-value=1.3e+02 Score=16.27 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=8.0
Q ss_pred hhhcCCCCCceeHHHH
Q 031999 18 SLFDKDGDGCITTKEL 33 (149)
Q Consensus 18 ~~~D~~~~g~l~~~e~ 33 (149)
..++.+++|.|+...+
T Consensus 22 ~~~~~~~~g~Vpi~~i 37 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTI 37 (61)
T ss_dssp HHHCTTTTTBEEHHHH
T ss_pred HHHHhcCCCcEeHHHH
Confidence 4444455555555444
No 303
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=21.09 E-value=2.1e+02 Score=17.37 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=23.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 100 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.+|.+++..+++..|..+....+..+++.+.
T Consensus 17 ~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 17 EITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 5999999999999998777766666665553
No 304
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=20.94 E-value=2.6e+02 Score=18.38 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=13.4
Q ss_pred CcccHHHHHHHHHHhCCCCCH
Q 031999 99 GFISAAELRHVMTNLGEKLTD 119 (149)
Q Consensus 99 g~it~~e~~~~~~~~~~~l~~ 119 (149)
|+++.+||...+...+.++.+
T Consensus 87 g~~~iedl~~~i~~~~~~f~~ 107 (152)
T TIGR01309 87 GYESVDELAKALVEGEIKLSE 107 (152)
T ss_pred CCccHHHHHHHHHcCCCCccc
Confidence 666777777776666655433
No 305
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=20.92 E-value=76 Score=18.27 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=8.9
Q ss_pred CCCceeHHHHHHH
Q 031999 133 GDGQINYEEFVKV 145 (149)
Q Consensus 133 ~dg~i~~~ef~~~ 145 (149)
.-+.||++||+.+
T Consensus 32 APmSIS~eeY~~L 44 (81)
T PF10891_consen 32 APMSISFEEYIRL 44 (81)
T ss_pred cccEeeHHHHHHH
Confidence 4467888887764
No 306
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=20.87 E-value=1.6e+02 Score=15.90 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=15.0
Q ss_pred cHHHHHHHhhhh--ccCCCCcccHHHHHHHHHH
Q 031999 82 SEEELKEAFRVF--DKDQNGFISAAELRHVMTN 112 (149)
Q Consensus 82 ~~~~~~~~f~~~--D~~~~g~it~~e~~~~~~~ 112 (149)
+-+++....+.| +. +...+|.+|++.++..
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 445666666666 33 2233666666666644
No 307
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=20.78 E-value=1.3e+02 Score=16.45 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=17.6
Q ss_pred hhhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhcc
Q 031999 90 FRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREAD 130 (149)
Q Consensus 90 f~~~D~~~~g~it~~e~~~~~~~~~-~~l~~~~~~~l~~~~d 130 (149)
|..+-.+..|.+|+.+...+-.-+. ..++++-+..++..+-
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~ 43 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYAL 43 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444445566555554443332 1344445555544443
No 308
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=20.28 E-value=2.2e+02 Score=17.44 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 031999 100 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
Q Consensus 100 ~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d 130 (149)
.||.+.+..+++..|..+.+..+..+++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 6999999999999998888888887777664
No 309
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.17 E-value=2.1e+02 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcccCCCCceeHHHH
Q 031999 98 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 142 (149)
Q Consensus 98 ~g~it~~e~~~~~~~~~~~l~~~~~~~l~~~~d~~~dg~i~~~ef 142 (149)
.-.+.+.+|++++.....-.+.=++.++-..+|...+++||--||
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEF 232 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEF 232 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehh
Confidence 345778888888877654444455666667788888888876555
No 310
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.13 E-value=2.2e+02 Score=23.49 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=43.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc---C-----CCCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 031999 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL---G-----QNPTEAELQDMINEVDADGNGTIDFPEFLNLM 73 (149)
Q Consensus 11 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 73 (149)
.+++-.|..+|. .+|.++.++...++... + ..+..+....+++..+.++.|.+.+.++...+
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILL 87 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHH
Confidence 567778888887 88999998888776532 1 22344455667888888888888777766554
Done!