BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032001
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIKQRL 113
N+NVE FF++ARDIK ++
Sbjct: 155 NINVENAFFTLARDIKAKM 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 94 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 152
Query: 95 NLNVEQVFFSIARDIKQRL 113
N+NVE FF++ARDIK ++
Sbjct: 153 NINVENAFFTLARDIKAKM 171
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +++ WI+ I+++A +NVNK+LVGNK D+ SKR V + +G+ LAD +GIKF ETSAK
Sbjct: 97 FDNVKQWIQEIDRYAMENVNKLLVGNKCDL-VSKRVVTSDEGRELADSHGIKFIETSAKN 155
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVEQ F ++A +IK+R+
Sbjct: 156 AYNVEQAFHTMAGEIKKRV 174
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+++++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK
Sbjct: 97 YANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKN 155
Query: 95 NLNVEQVFFSIARDIKQRLA 114
NVEQ F ++A +IK+R+
Sbjct: 156 ATNVEQAFMTMAAEIKKRMG 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+++++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK
Sbjct: 97 YANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKN 155
Query: 95 NLNVEQVFFSIARDIKQRLA 114
NVEQ F ++A +IK+R+
Sbjct: 156 ATNVEQAFMTMAAEIKKRMG 175
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 104 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 162
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIK 126
NVEQ F ++A +IK+R+ T +E S +K
Sbjct: 163 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 113 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 171
Query: 95 NLNVEQVFFSIARDIKQRLA 114
NVEQ F ++A +IK+R+
Sbjct: 172 ATNVEQSFMTMAAEIKKRMG 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 104 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 162
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVEQ F ++A +IK+R+
Sbjct: 163 ATNVEQSFMTMAAEIKKRM 181
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 94 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 152
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVEQ F ++A +IK+R+
Sbjct: 153 ATNVEQSFMTMAAEIKKRM 171
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 94 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 152
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVEQ F ++A +IK+R+
Sbjct: 153 ATNVEQSFMTMAAEIKKRM 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 87 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 145
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVEQ F ++A +IK+R+
Sbjct: 146 ATNVEQSFMTMAAEIKKRM 164
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I+ W + + +HA+D +LVGNK+DM+ R V +G+ALA E GI F E+SAK
Sbjct: 108 FTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKN 165
Query: 95 NLNVEQVFFSIARDIKQRL 113
+ NV ++FF++A+ I++++
Sbjct: 166 DDNVNEIFFTLAKLIQEKI 184
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I+ W + + +HA+D +LVGNK+DM+ R V +G+ALA E GI F E+SAK
Sbjct: 95 FTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKN 152
Query: 95 NLNVEQVFFSIARDIKQRL 113
+ NV ++FF++A+ I++++
Sbjct: 153 DDNVNEIFFTLAKLIQEKI 171
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I+ W + + +HA+D +LVGNK+DM+ R V +G+ALA E GI F E+SAK
Sbjct: 91 FTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKN 148
Query: 95 NLNVEQVFFSIARDIKQRL 113
+ NV ++FF++A+ I++++
Sbjct: 149 DDNVNEIFFTLAKLIQEKI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 121 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 179
Query: 95 NLNVEQVFFSIARDIKQR 112
NVEQ F + A +IK+R
Sbjct: 180 ATNVEQSFXTXAAEIKKR 197
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVG K D+ +K+ V + + AD GI F ETSAK
Sbjct: 96 FNNVKQWLQEIDRYASENVNKLLVGIKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLA 114
NVEQ F ++A +IK+R+
Sbjct: 155 ATNVEQSFMTMAAEIKKRMG 174
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I+ W + + +HA+D +LVGNK+D + R V +G+ALA E GI F E+SAK
Sbjct: 91 FTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQGEALAKELGIPFIESSAKN 148
Query: 95 NLNVEQVFFSIARDIKQRL 113
+ NV ++FF++A+ I++++
Sbjct: 149 DDNVNEIFFTLAKLIQEKI 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I+ W + + +HA+D +LVGNK+D + R V +G+ALA E GI F E+SAK
Sbjct: 91 FTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQGEALAKELGIPFIESSAKN 148
Query: 95 NLNVEQVFFSIARDIKQRL 113
+ NV ++FF++A+ I++++
Sbjct: 149 DDNVNEIFFTLAKLIQEKI 167
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +++W I+ ++ DN +LVGNK DM+E +R VPT KGQ LA++ G FFE SAK
Sbjct: 111 FNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKE 169
Query: 95 NLNVEQVFFSIARDIKQRLADT 116
N++V Q F + I +++D+
Sbjct: 170 NISVRQAFERLVDAICDKMSDS 191
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ + +W+ + QH+S N+ +L+GNK+D+ ES+R V +G+A A E+G+ F ETSAKT
Sbjct: 109 FNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKT 167
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVE+ F + A++I +++
Sbjct: 168 ACNVEEAFINTAKEIYRKI 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ + W+ + QH++ N+ +L+GNK+D+ ES+R V +G+A A E+G+ F ETSAKT
Sbjct: 98 FNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKT 156
Query: 95 NLNVEQVFFSIARDIKQR 112
NVE+ F + A++I ++
Sbjct: 157 ASNVEEAFINTAKEIYEK 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+ W+ I ++A +V +L+GNK D +R V G+ LA EYG+ F ETSAKT
Sbjct: 99 FDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKEYGLPFMETSAKT 157
Query: 95 NLNVEQVFFSIARDIKQR 112
LNV+ F +IA+++K+R
Sbjct: 158 GLNVDLAFTAIAKELKRR 175
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA+ F+ +++W I+ ++ DN +LVGNK D+ E +R VP G+ LAD+ G
Sbjct: 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLG 158
Query: 85 IKFFETSAKTNLNVEQVF 102
+FFE SAK N+NV+QVF
Sbjct: 159 FEFFEASAKENINVKQVF 176
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ SKRAV + QA AD+ + F ETSAKT
Sbjct: 93 FARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYADDNSLLFMETSAKT 151
Query: 95 NLNVEQVFFSIARDI 109
+NV ++F +IA+ +
Sbjct: 152 AMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ SKRAV + QA AD+ + F ETSAKT
Sbjct: 93 FARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYADDNSLLFMETSAKT 151
Query: 95 NLNVEQVFFSIARDI 109
+NV ++F +IA+ +
Sbjct: 152 AMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ SKRAV + QA AD+ + F ETSAKT
Sbjct: 91 FARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYADDNSLLFMETSAKT 149
Query: 95 NLNVEQVFFSIARDI 109
+NV ++F +IA+ +
Sbjct: 150 AMNVNEIFMAIAKKL 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 95 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 153
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 154 SMNVNEIFMAIAKKL 168
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 93 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 151
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 152 SMNVNEIFMAIAKKL 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 94 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKT 152
Query: 95 NLNVEQVFFSIARDI 109
++NV ++F +IA+ +
Sbjct: 153 SMNVNEIFMAIAKKL 167
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK
Sbjct: 93 FNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKD 151
Query: 95 NLNVEQVF 102
N+NV+Q F
Sbjct: 152 NINVKQTF 159
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAG 134
T VE F+++ R+I+Q K+N PD++G
Sbjct: 148 TRQGVEDAFYTLVREIRQH----------KLRKLNPPDESG 178
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +++W I+ ++ DN +LVGNK D E +R V + +G+ LAD G +FFE SAK
Sbjct: 96 FNAVQDWSTQIKTYSWDNAQVLLVGNKCDX-EDERVVSSERGRQLADHLGFEFFEASAKD 154
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQ 132
N+NV+Q F + I ++ +++ ++P+ Q Q
Sbjct: 155 NINVKQTFERLVDVICEKXSESLDTADPAVTGAKQGPQ 192
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ +NW++ +++ AS N+ L GNKAD+ +KRAV + Q+ AD+ + F ETSAKT
Sbjct: 95 FARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFXETSAKT 153
Query: 95 NLNVEQVFFSIARDI 109
+ NV ++F +IA+ +
Sbjct: 154 SXNVNEIFXAIAKKL 168
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ +LVGNK+D+ RAVPT + +A A++ G
Sbjct: 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNG 165
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 166 LSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ +LVGNK+D+ RAVPT + +A A++ G
Sbjct: 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNG 165
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 166 LSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK+D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ +LVGNK+D+ RAVPT + +A A++ G
Sbjct: 98 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNG 156
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 157 LSFIETSALDSTNVEAAFQTILTEI 181
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK+D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ +LVGNK+D+ RAVPT + +A A++ G
Sbjct: 86 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNG 144
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 145 LSFIETSALDSTNVEAAFQTILTEI 169
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKAD--MDESKRAVPTSKGQALADEYGIKFFETSA 92
F R+W++ + + AS ++ LVGNK D + +R V +G+ LA+E G+ FFETSA
Sbjct: 91 FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSA 150
Query: 93 KTNLNVEQVFFSIARDI 109
KT NV VF I I
Sbjct: 151 KTGENVNDVFLGIGEKI 167
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 35 FSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNW+ ++ +A +N + VL+GNKAD+ + +R V + + LA++YGI +FETSA
Sbjct: 109 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAA 167
Query: 94 TNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQPDQAGGVGQAAQKSAC 145
T NVE+ ++ I +R+ +++ P T+ + G A +K AC
Sbjct: 168 TGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADM-----DESKRAVPTSKGQALADEYGIKFFE 89
F +IR W+ IE A + V +LVGNKAD+ E ++ VP G+ LA YG F E
Sbjct: 116 FLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCE 175
Query: 90 TSAKTNLNVEQVFFSIARDIKQR 112
TSAK N+ + +AR++K+R
Sbjct: 176 TSAKDGSNIVEAVLHLAREVKKR 198
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 95 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 152
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 153 TRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 95 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 152
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 153 TRQGVEDAFYTLVREIRQ 170
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 26 CTYKIA-SYHFSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83
C + I S F+DI + I++ SD+V VLVGNK D+ R V T + LA Y
Sbjct: 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSY 155
Query: 84 GIKFFETSAKTNLNVEQVFFSIARDIKQ 111
GI F ETSAKT VE F+++ R+I+Q
Sbjct: 156 GIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 95 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 152
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 153 TRQGVEDAFYTLVREIRQ 170
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 97 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 154
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 155 TRQGVEDAFYTLVREIRQ 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ LVGNK+D+ RAVPT + +A A++ G
Sbjct: 89 LVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNG 147
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 148 LSFIETSALDSTNVEAAFQTILTEI 172
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 96 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 153
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 154 TRQGVEDAFYTLVREIRQ 171
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ LVGNK+D+ RAVPT + +A A++ G
Sbjct: 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNG 141
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE F +I +I
Sbjct: 142 LSFIETSALDSTNVEAAFQTILTEI 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ + W++ +++ AS ++ L GNKAD+ +KR V + QA AD+ + F ETSAKT
Sbjct: 96 FARAKTWVKELQRQASPSIVIALAGNKADL-ANKRMVEYEEAQAYADDNSLLFMETSAKT 154
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTI 125
+NV +F +IA+ + +SEP +
Sbjct: 155 AMNVNDLFLAIAKKL--------PKSEPQNL 177
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AGRTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 35 FSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNWI ++ HA S+N + VL GNK+D+ E +RAV + + LA++YGI +FETSA
Sbjct: 109 FLNVRNWISQLQMHAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAA 167
Query: 94 TNLNVEQVFFSIARDIKQRL 113
N+ + I +R+
Sbjct: 168 NGTNISHAIEMLLDLIMKRM 187
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 50 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
D + ++VGNK+D++E +R VP + ++ A+E+G+++ ETSAKT NV++VFF + R+I
Sbjct: 107 EDKIPLLVVGNKSDLEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
Query: 110 KQR 112
+ +
Sbjct: 166 RTK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 50 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
D + ++VGNK+D++E +R VP + ++ A+E+G+++ ETSAKT NV++VFF + R+I
Sbjct: 111 EDKIPLLVVGNKSDLEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
Query: 110 KQR 112
+ +
Sbjct: 170 RTK 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ ++ W++ I+++A+ V K+LVGNK D+ + KR V + AD + F ETSA
Sbjct: 96 FNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALD 154
Query: 95 NLNVEQVFFSIARDIKQRLA 114
+ NVE F ++AR IK+ ++
Sbjct: 155 STNVEDAFLTMARQIKESMS 174
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGN+ D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+I+Q
Sbjct: 148 TRQGVEDAFYTLVREIRQ 165
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 26 CTYKIASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y IA + + ++ W++ + HA N+ +LVGNK+D+ RAVPT + +A A++
Sbjct: 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNN 141
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA + NVE+ F +I +I
Sbjct: 142 LSFIETSALDSTNVEEAFKNILTEI 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 35 FSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNW+ ++ +A +N + VL+GNKAD+ + +R V + + LAD+YGI +FETSA
Sbjct: 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAA 181
Query: 94 TNLNVEQVFFSIARDIKQRLADTDSRSE-PSTI 125
T NVE+ ++ I +R+ +++ P T+
Sbjct: 182 TGQNVEKAVETLLDLIMKRMEQCVEKTQIPDTV 214
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ ++ W++ I+++A+ V K+LVGNK D+ + KR V + AD + F ETSA
Sbjct: 96 FNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALD 154
Query: 95 NLNVEQVFFSIARDIKQRLA 114
+ NVE F ++AR IK+ ++
Sbjct: 155 STNVEDAFLTMARQIKESMS 174
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI ++ I++ S++V VLVGNK+D+ R V T + Q LA YGI F ETSAK
Sbjct: 91 FEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAK 148
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F+++ R+I++
Sbjct: 149 TRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI ++ I++ S++V VLVGNK+D+ R V T + Q LA YGI F ETSAK
Sbjct: 91 FEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAK 148
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F+++ R+I++
Sbjct: 149 TRQGVDDAFYTLVREIRK 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI ++ I++ S++V VLVGNK+D+ R V T + Q LA YGI F ETSAK
Sbjct: 91 FEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAK 148
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F+++ R+I++
Sbjct: 149 TRQGVDDAFYTLVREIRK 166
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+ ++ W++ I+++A+ V K+LVGNK D+ + KR V + AD + F ETSA
Sbjct: 109 FNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALD 167
Query: 95 NLNVEQVFFSIARDIKQ 111
+ NVE F ++AR IK+
Sbjct: 168 STNVEDAFLTMARQIKE 184
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI + I++ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAK
Sbjct: 90 FEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAK 147
Query: 94 TNLNVEQVFFSIARDIKQ 111
T VE F+++ R+ +Q
Sbjct: 148 TRQGVEDAFYTLVREFRQ 165
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAK 93
F D+ W++ I+++AS++ +LVGNK D E+ R + +G+ A + G++F E SAK
Sbjct: 114 FDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQGEKFAQQITGMRFCEASAK 172
Query: 94 TNLNVEQVFFSIARDIKQRL 113
N NV+++F + DI +++
Sbjct: 173 DNFNVDEIFLKLVDDILKKM 192
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI ++ I++ S++V VLVGNK D+ R V T + Q LA YGI F ETSAK
Sbjct: 91 FEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAK 148
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F+++ R+I++
Sbjct: 149 TRQGVDDAFYTLVREIRK 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F DI ++ I++ S++V VLVGNK D+ R V T + Q LA YGI F ETSAK
Sbjct: 108 FEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAK 165
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F+++ R+I++
Sbjct: 166 TRQGVDDAFYTLVREIRK 183
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
+D R I +++ +NV +LVGNK+D+ E KR V + + AD++ + + ETSAKT
Sbjct: 95 ADFREQILRVKE--DENVPFLLVGNKSDL-EDKRQVSVEEAKNRADQWNVNYVETSAKTR 151
Query: 96 LNVEQVFFSIARDIKQR 112
NV++VFF + R+I+ R
Sbjct: 152 ANVDKVFFDLMREIRAR 168
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAK 93
F + +WI ++ ++A N+ ++L+GNK+D+ E R V ++ Q+LA+ Y I ETSAK
Sbjct: 117 FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAK 175
Query: 94 TNLNVEQVFFSIARDIKQR 112
+ NVE+ F +A ++ R
Sbjct: 176 DSSNVEEAFLRVATELIMR 194
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 35 FSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNW+ ++ +A +N + VL+GNKAD+ + +R V + + LA++YGI +FETSA
Sbjct: 109 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAA 167
Query: 94 TNLNVEQVFFSIARDIKQRLADTDSRSE-PSTI 125
T NVE+ ++ I +R+ +++ P T+
Sbjct: 168 TGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTV 200
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 27 TYKIA-SYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 85
TY I F + W+R IEQ+AS+ V VLVGNK D+ E +R V + + ++ +
Sbjct: 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDM 163
Query: 86 KFFETSAKTNLNVEQVFFSIA 106
+ ETSAK + NVE++F +A
Sbjct: 164 YYLETSAKESDNVEKLFLDLA 184
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +++ W+ I Q+ D+V ++LVGNK D D ++ V T A + GI+ FETSAK
Sbjct: 97 FVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKE 154
Query: 95 NLNVEQVF 102
N+NVE++F
Sbjct: 155 NVNVEEMF 162
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
+D R I +++ +NV +LVGNK+D+ E KR V + + A+++ + + ETSAKT
Sbjct: 105 ADFREQILRVKE--DENVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTR 161
Query: 96 LNVEQVFFSIARDIKQR 112
NV++VFF + R+I+ R
Sbjct: 162 ANVDKVFFDLMREIRAR 178
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
+D R I +++ +NV +LVGNK+D+ E KR V + + A+++ + + ETSAKT
Sbjct: 97 ADFREQILRVKE--DENVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTR 153
Query: 96 LNVEQVFFSIARDIKQR 112
NV++VFF + R+I+ R
Sbjct: 154 ANVDKVFFDLMREIRAR 170
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
+D R I +++ +NV +LVGNK+D+ E KR V + + A+++ + + ETSAKT
Sbjct: 109 ADFREQILRVKE--DENVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTR 165
Query: 96 LNVEQVFFSIARDIKQR 112
NV++VFF + R+I+ R
Sbjct: 166 ANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
+D R I +++ +NV +LVGNK+D+ E KR V + + A+++ + + ETSAKT
Sbjct: 97 ADFREQILRVKE--DENVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTR 153
Query: 96 LNVEQVFFSIARDIKQR 112
NV++VFF + R+I+ R
Sbjct: 154 ANVDKVFFDLMREIRAR 170
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 23 FKYCTYKIASYHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD 81
F Y +AS+H + WI +QH ++++ ++LVGNK D+ S VPT Q AD
Sbjct: 99 FVYDMTNMASFH--SLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDLAQKFAD 155
Query: 82 EYGIKFFETSAKT---NLNVEQVFFSIARDIK 110
+ + FETSAK N +VE +F ++A +K
Sbjct: 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 35 FSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNW ++ +A +N + VL+GNKAD+ + +R V + + LA++YGI +FETSA
Sbjct: 109 FLNVRNWXSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAA 167
Query: 94 TNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG 135
T NVE + ++ L R E K PD G
Sbjct: 168 TGQNVE-------KSVETLLDLIXKRXEKCVEKTQVPDTVNG 202
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 17 LAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 76
L V K+ TY + + W++ + HA + +LVGNK+D+ ++ R VPT +
Sbjct: 102 LLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 153
Query: 77 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
+ A+ G+ F ETSA + NVE F ++ ++I
Sbjct: 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 17 LAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 76
L V K+ TY + + W++ + HA + +LVGNK+D+ ++ R VPT +
Sbjct: 87 LLVFDLTKHQTYAV-------VERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 138
Query: 77 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
+ A+ G+ F ETSA + NVE F ++ ++I
Sbjct: 139 RMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 35 FSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F ++RNW ++ +A +N + VL+GNKAD+ + +R V + + LA++YGI +FETSA
Sbjct: 109 FLNVRNWXSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAA 167
Query: 94 TNLNVEQVFFSIARDIKQR 112
T NVE+ ++ I +R
Sbjct: 168 TGQNVEKSVETLLDLIXKR 186
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F + W++ ++ + N+ L GNK+D+ ++ R V Q A E G+ F ETSAKT
Sbjct: 100 FERAKKWVQELQAQGNPNMVMALAGNKSDLLDA-RKVTAEDAQTYAQENGLFFMETSAKT 158
Query: 95 NLNVEQVFFSIARDI 109
NV+++F+ IAR +
Sbjct: 159 ATNVKEIFYEIARRL 173
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F ++ W++ +++H +N+ + GNK D+ + R VP + A+ G ETSAK
Sbjct: 111 FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI-REVPLKDAKEYAESIGAIVVETSAKN 169
Query: 95 NLNVEQVFFSIARDI 109
+N+E++F I+R I
Sbjct: 170 AINIEELFQGISRQI 184
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
++ + +W+ + + N +L+GNKAD+ E++R V + + A+E G+ F E SAKT
Sbjct: 118 YNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKT 176
Query: 95 NLNVEQVFFSIARDIKQRL 113
NVE F A+ I Q +
Sbjct: 177 GENVEDAFLEAAKKIYQNI 195
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 23 FKYCTYKIASYHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD 81
F Y AS+H + WI +QH ++++ ++LVGNK D+ S VPT Q AD
Sbjct: 108 FVYDXTNXASFH--SLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDLAQKFAD 164
Query: 82 EYGIKFFETSAKT---NLNVEQVFFSIARDIK 110
+ FETSAK N +VE +F ++A +K
Sbjct: 165 THSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
++ + +W+ + + N +L+GNKAD+ E++R V + + A+E G+ F E SAKT
Sbjct: 103 YNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKT 161
Query: 95 NLNVEQVFFSIARDIKQ 111
NVE F A+ I Q
Sbjct: 162 GENVEDAFLEAAKKIYQ 178
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I + + F WI ++ +V +LVGNK D+ + KR V +G+ A E
Sbjct: 94 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELN 152
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQPDQ 132
+ F ETSAK NV+Q+F +A + + D SR + IK+ +P +
Sbjct: 153 VMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQE 201
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I + + F WI ++ +V +LVGNK D+ + KR V +G+ A E
Sbjct: 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELN 149
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQPDQ 132
+ F ETSAK NV+Q+F +A + + D SR + IK+ +P +
Sbjct: 150 VMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQE 198
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 110
D+ VLVGNKAD+ ES+R VP S+ A + + +FE SAK LNV++ F + R ++
Sbjct: 113 DDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171
Query: 111 Q 111
+
Sbjct: 172 K 172
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 9 FIGVYPPYL--AVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDE 66
F + P Y+ + + Y S+H WI ++ +V +LVGNK D+ +
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFH--QTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 67 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 106
KR V T +G+ A E + F ETSAK NV+Q+F +A
Sbjct: 134 -KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 18 AVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 77
AV Y K +SY + +W+ + ++A DNV L+GNK+D+ RAVPT + +
Sbjct: 86 AVGALIVYDISKSSSYE--NCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEESK 142
Query: 78 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114
A E + F ETSA + NV++ F + I Q+++
Sbjct: 143 TFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
FS ++NW+R + QH ++ + GNK D+ + R V + AD F ETSAK
Sbjct: 94 FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDAKDYADSIHAIFVETSAKN 152
Query: 95 NLNVEQVFFSIARDI 109
+N+ ++F I+R I
Sbjct: 153 AININELFIEISRRI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
FS ++NW+R + QH ++ + GNK D+ + R V + AD F ETSAK
Sbjct: 93 FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDAKDYADSIHAIFVETSAKN 151
Query: 95 NLNVEQVFFSIARDI 109
+N+ ++F I+R I
Sbjct: 152 AININELFIEISRRI 166
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I + + F WI ++ +V +LVGNK D+ + KR + +G+ A E
Sbjct: 80 VVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQITIEEGEQRAKELS 138
Query: 85 IKFFETSAKTNLNVEQVFFSIA 106
+ F ETSAKT NV+Q+F +A
Sbjct: 139 VMFIETSAKTGYNVKQLFRRVA 160
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 52 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIK 110
NV +LVGNKAD+D S R V T +G+ LA E F+E SA T N+ ++F+ + R+++
Sbjct: 132 NVTLILVGNKADLDHS-RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190
Query: 111 QR 112
+R
Sbjct: 191 RR 192
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 35 FSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F +I + R I + D +L+GNKAD+D +R V +GQ LA + + + E SAK
Sbjct: 92 FEEIYKFQRQILRVKDRDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAK 150
Query: 94 TNLNVEQVFFSIARDIKQ 111
+NV+Q F + R I++
Sbjct: 151 IRMNVDQAFHELVRVIRK 168
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F ++NW++ + + + + +VGNK D+ E +R V + ++ A+ G K + TSAK
Sbjct: 108 FQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYAESVGAKHYHTSAKQ 166
Query: 95 NLNVEQVFFSIARDIKQRLADT 116
N +E++F D+ +R+ +T
Sbjct: 167 NKGIEELFL----DLCKRMIET 184
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F ++NW++ + + + + +VGNK D+ E +R V + ++ A+ G K + TSAK
Sbjct: 94 FQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYAESVGAKHYHTSAKQ 152
Query: 95 NLNVEQVFFSIARDIKQRLADT 116
N +E++F D+ +R+ +T
Sbjct: 153 NKGIEELFL----DLCKRMIET 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I + + F WI ++ +V +LVGNK D+ + KR V +G+ A E
Sbjct: 84 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELN 142
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKI 127
+ F ETSAK NV+Q+F +A + + T RS I I
Sbjct: 143 VMFIETSAKAGYNVKQLFRRVAAALPG-MESTQDRSREDMIDI 184
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F ++NW++ + + + + +VGNK D+ E +R V + ++ A+ G K + TSAK
Sbjct: 94 FQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQEAESYAESVGAKHYHTSAKQ 152
Query: 95 NLNVEQVFFSIARDIKQRLADT 116
N +E++F D+ +R+ +T
Sbjct: 153 NKGIEELFL----DLCKRMIET 170
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F WI ++ +V +LVGNK D+ + KR V +G+ A E + F ETSAK
Sbjct: 94 FQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 95 NLNVEQVFFSIA 106
NV+Q+F +A
Sbjct: 153 GYNVKQLFRRVA 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 93
D+R I ++ +D+V +LVGNK D+ E +R V +GQ LA ++ F E+SAK
Sbjct: 93 LQDLREQILRVKD--TDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAK 149
Query: 94 TNLNVEQVFFSIARDI 109
+ +NV ++F+ + R I
Sbjct: 150 SKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 93
D+R I ++ +D+V +LVGNK D+ E +R V +GQ LA ++ F E+SAK
Sbjct: 95 LQDLREQILRVKD--TDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAK 151
Query: 94 TNLNVEQVFFSIARDI 109
+ +NV ++F+ + R I
Sbjct: 152 SKINVNEIFYDLVRQI 167
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 35 FSDIRNWIRNIEQHASDNVNK------VLVGNKADMDESKRAVPTSKGQALADEYG-IKF 87
F +I++W HA NVN V++GNK D +ESK+ V Q LA G I
Sbjct: 97 FENIKSWRDEFLVHA--NVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154
Query: 88 FETSAKTNLNVEQVFFSIARDIKQR 112
F TSAK +NV+ F IAR Q+
Sbjct: 155 FLTSAKNAINVDTAFEEIARSALQQ 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I S ++ + NW+ + AS N+ +L GNK D+D + R V + A E
Sbjct: 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQENE 146
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRL 113
+ F ETSA T NVE+ F AR I ++
Sbjct: 147 LMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F WI ++ +V +LVGNK D+ + KR V +G+ A E + F ETSAK
Sbjct: 89 FQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKA 147
Query: 95 NLNVEQVFFSIA 106
NV+Q+F +A
Sbjct: 148 GYNVKQLFRRVA 159
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 15 PYLAVLCRFKYC-TYKIASYH-FSDIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAV 71
PY ++ Y Y + S H F I + + + E H V VLVGNKAD+ +R V
Sbjct: 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREV 147
Query: 72 PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
+G+ LA+ +G F E+SA+ N + +F + ++I
Sbjct: 148 QAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 31 ASYHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALA-DEYGI 85
A F + +W AS +N V++GNK D++ R V T + QA + I
Sbjct: 92 APNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNI 149
Query: 86 KFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQPDQAGGVGQA 139
+FETSAK +NVEQ F +IAR+ ++ + + +E P IK+++ D+A ++
Sbjct: 150 PYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAES 204
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAK 93
D+R I ++ +++V +LVGNK D+ E +R V +GQ LA ++ F E+SAK
Sbjct: 93 LQDLREQILRVKD--TEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAK 149
Query: 94 TNLNVEQVFFSIARDI 109
+ +NV ++F+ + R I
Sbjct: 150 SKINVNEIFYDLVRQI 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAK 93
D+R I ++ +++V +LVGNK D+ E +R V +GQ LA ++ F E+SAK
Sbjct: 93 LQDLREQILRVKD--TEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAK 149
Query: 94 TNLNVEQVFFSIARDI 109
+ +NV ++F+ + R I
Sbjct: 150 SKINVNEIFYDLVRQI 165
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA +
Sbjct: 92 SELRVQLRRARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALH 148
Query: 96 LNVEQVFFSIARDIKQR 112
NV+ +F + R I+ R
Sbjct: 149 HNVQALFEGVVRQIRLR 165
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDI 109
+N V++GNK D + R V T + QA + I +FETSAK +NVEQ F +IAR+
Sbjct: 116 ENFPFVVLGNKIDFE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
Query: 110 KQRLADTDSRSE-PSTIKINQPDQAGGVGQA 139
++ + + +E P IK+++ D+A ++
Sbjct: 174 LKQETEVELYNEFPEPIKLDKNDRAKASAES 204
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA +
Sbjct: 97 SELRVQLRRARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALH 153
Query: 96 LNVEQVFFSIARDIKQR 112
NV+ +F + R I+ R
Sbjct: 154 HNVQALFEGVVRQIRLR 170
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA +
Sbjct: 97 SELRVQLRRARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALH 153
Query: 96 LNVEQVFFSIARDIKQR 112
NV+ +F + R I+ R
Sbjct: 154 HNVQALFEGVVRQIRLR 170
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDI 109
+N V++GNK D++ R V T + QA + I +FETSAK +NVEQ F +IAR+
Sbjct: 116 ENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
Query: 110 KQRLADTDSRSE-PSTIKINQPDQAGGVGQA 139
++ + + +E P IK+++ ++A ++
Sbjct: 174 LKQETEVELYNEFPEPIKLDKNERAKASAES 204
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I S ++ + W+ + AS N+ +L GNK D+D +R V + A E
Sbjct: 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENE 161
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRL 113
+ F ETSA T NVE+ F AR I ++
Sbjct: 162 LMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I S ++ + NW+ + AS N+ +L GNK D+D + R V + A E
Sbjct: 89 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQENE 147
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA T +VE+ F AR I
Sbjct: 148 LMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
Y I S ++ + NW+ + AS N+ +L GNK D+D + R V + A E
Sbjct: 86 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQENE 144
Query: 85 IKFFETSAKTNLNVEQVFFSIARDI 109
+ F ETSA T +VE+ F AR I
Sbjct: 145 LMFLETSALTGEDVEEAFVQCARKI 169
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 102
+++ +LVGNK D E++R V T + QA+A E+ F ETSAK N NV+++F
Sbjct: 113 EDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA
Sbjct: 100 SELRIQLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156
Query: 96 LNVEQVFFSIARDIKQR 112
NV+++F I R ++ R
Sbjct: 157 HNVKELFEGIVRQVRLR 173
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 18 AVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 77
AV Y K +SY + +W+ + ++A DNV L+GNK+D+ RAVPT + +
Sbjct: 83 AVGALIVYDISKSSSYE--NCNHWLTELRENADDNVAVGLIGNKSDL-AHLRAVPTDEAK 139
Query: 78 ALADEYGIKFFETSAKTNLNVEQVF 102
A E + F ETSA + NV++ F
Sbjct: 140 NFAMENQMLFTETSALNSDNVDKAF 164
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA
Sbjct: 100 SELRIQLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQ 156
Query: 96 LNVEQVFFSIARDIKQR 112
NV+++F I R ++ R
Sbjct: 157 HNVKELFEGIVRQVRLR 173
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA
Sbjct: 100 SELRIQLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQ 156
Query: 96 LNVEQVFFSIARDIKQR 112
NV+++F I R ++ R
Sbjct: 157 HNVKELFEGIVRQVRLR 173
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA
Sbjct: 131 SELRIQLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQ 187
Query: 96 LNVEQVFFSIARDIKQR 112
NV+++F I R ++ R
Sbjct: 188 HNVKELFEGIVRQVRLR 204
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 35 FSDI---RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 91
F DI R+ I ++++ + V +LVGNK D++ + +S+G+ALA+E+G F ETS
Sbjct: 90 FQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETS 146
Query: 92 AKTNLNVEQVFFSIARDI 109
AK+ V+++F I R +
Sbjct: 147 AKSKTMVDELFAEIVRQM 164
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F + WI++I +V LVGNK D+ + R V +G A EY F ETSAK
Sbjct: 89 FENTTKWIQDILNERGKDVIIALVGNKTDLGDL-RKVTYEEGXQKAQEYNTXFHETSAKA 147
Query: 95 NLNVEQVF 102
N++ +F
Sbjct: 148 GHNIKVLF 155
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95
S++R +R H +D+V +LVGNKAD+ R V +G+A A + KF ETSA
Sbjct: 97 SELRIQLRRT--HQADHVPIILVGNKADLARC-REVSVEEGRACAVVFDCKFIETSATLQ 153
Query: 96 LNVEQVF 102
NV ++F
Sbjct: 154 HNVAELF 160
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARD 108
+N V++GNK D++ R V T + QA + I +FETSAK +NVEQ F +IAR+
Sbjct: 116 ENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 27/30 (90%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADM 64
F++++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 86 FNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W++ + +A N+ +LVGNK+D+ + R + + A + + F ETSA
Sbjct: 96 FENIEKWLKELRDNADSNIVILLVGNKSDL-KHLRVINDNDATQYAKKEKLAFIETSALE 154
Query: 95 NLNVEQVFFSIARDI 109
NVE F + +I
Sbjct: 155 ATNVELAFHQLLNEI 169
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 51 DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 110
+++ +LVGNK D S R V +S+ +ALA + F ETSAK N NV+++F + K
Sbjct: 108 ESIPIMLVGNKCDESPS-REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166
Query: 111 QR 112
+R
Sbjct: 167 RR 168
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQR 112
+LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F + R I+Q+
Sbjct: 122 ILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQR 112
+LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F + R I+Q+
Sbjct: 127 ILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQR 112
+LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F + R I+Q+
Sbjct: 127 ILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQR 112
+LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F + R I+Q+
Sbjct: 127 ILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ E K +K + +++++ SAK+
Sbjct: 100 YKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKS 155
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 156 NYNFEKPFLWLARKL 170
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 30 IASYHFSDIRNW--IRNIEQHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADE 82
I Y + I+++ I+ I D V KV LVGNK D+ +R + +G+ALA+
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAES 140
Query: 83 YGIKFFETSAKTNLNVEQVF 102
+ F E+SAK N VF
Sbjct: 141 WNAAFLESSAKENQTAVDVF 160
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ E K +K + +++++ SAK+
Sbjct: 93 YKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKS 148
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 149 NYNFEKPFLWLARKL 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ E K +K + +++++ SAK+
Sbjct: 92 YKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKS 147
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 148 NYNFEKPFLWLARKL 162
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 91 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKS 146
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 147 NYNFEKPFLWLARKL 161
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 30 IASYHFSDIRNW--IRNIEQHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADE 82
I Y + I+++ I+ I D V KV LVGNK D+ +R + +G+ALA+
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAES 140
Query: 83 YGIKFFETSAKTNLNVEQVF 102
+ F E+SAK N VF
Sbjct: 141 WNAAFLESSAKENQTAVDVF 160
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 30 IASYHFSDIRNW--IRNIEQHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADE 82
I Y + I+++ I+ I D V KV LVGNK D+ +R + +G+ALA+
Sbjct: 77 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAES 135
Query: 83 YGIKFFETSAKTNLNVEQVF 102
+ F E+SAK N VF
Sbjct: 136 WNAAFLESSAKENQTAVDVF 155
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 94 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKS 149
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 150 NYNFEKPFLWLARKL 164
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 30 IASYHFSDIRNW--IRNIEQHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADE 82
I Y + I+++ I+ I D V KV LVGNK D+ +R + +G+ALA+
Sbjct: 80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAES 138
Query: 83 YGIKFFETSAKTNLNVEQVF 102
+ F E+SAK N VF
Sbjct: 139 WNAAFLESSAKENQTAVDVF 158
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 103 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 158
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 159 NYNFEKPFLWLARKL 173
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 103 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 158
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 159 NYNFEKPFLWLARKL 173
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 100 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKS 155
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 156 NYNFEKPFLWLARKL 170
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112
+LVGNK+D+ S R V +G+ LA K ETSA + N ++F R I+ R
Sbjct: 113 ILVGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+ ++ NW R++ + +N+ VL GNK D+ + K +K + +++++ SAK+
Sbjct: 98 YKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKS 153
Query: 95 NLNVEQVFFSIARDI 109
N N E+ F +AR +
Sbjct: 154 NYNFEKPFLWLARKL 168
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112
+LVGNK+D+ S R V +G+ LA K ETSA + N ++F R I+ R
Sbjct: 134 ILVGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112
+LVGNK+D+ S R V +G+ LA K ETSA + N ++F R I+ R
Sbjct: 123 ILVGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 39 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 98
+ W+ ++ S N +LV NK +D++K V + Q A + + F +TSAKT N+
Sbjct: 136 KTWVNQLK--ISSNYIIILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNI 191
Query: 99 EQVFFSIARDIKQRLAD 115
+ +F+ +A +I + + +
Sbjct: 192 KNIFYMLAEEIYKNIIN 208
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 41 WIRNIEQHASD---NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL- 96
++ + HA + ++ +L+GNK DM + R V ++G ALA +G FFE SA +
Sbjct: 113 YLELLALHAKETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAGRFGCLFFEVSACLDFE 171
Query: 97 NVEQVFFSIARDIKQ 111
+V+ VF R+ ++
Sbjct: 172 HVQHVFHEAVREARR 186
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 32 SYHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IK 86
S F ++ NW + +A ++ V++GNK D+ E R V T + QA + G
Sbjct: 96 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE--RQVSTEEAQAWCKDNGDYP 153
Query: 87 FFETSAKTNLNVEQVFFSIARDI 109
+FETSAK + NV F R I
Sbjct: 154 YFETSAKDSTNVAAAFEEAVRRI 176
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFF 88
WI + H V +LVG K D+ E ++ V + +GQ++AD+ G ++
Sbjct: 104 WIAEV-LHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYY 162
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF + R
Sbjct: 163 ECSAKTGYGVREVFEAATR 181
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 35 FSDIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93
F + NW+ +E + + N + LVGNK +D+ R V ++G A ++ F E SAK
Sbjct: 103 FVKLDNWLNELETYCTRNDIVNXLVGNK--IDKENREVDRNEGLKFARKHSXLFIEASAK 160
Query: 94 TNLNVEQVFFSIARDIKQ 111
T V+ F + I Q
Sbjct: 161 TCDGVQCAFEELVEKIIQ 178
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADM-DESKRAVPTSKGQALADEYGIKFFETSAK 93
F I +W + D + LV NK D+ D+S + + + LA ++F+ TS K
Sbjct: 93 FEAISSWREKVVAEVGD-IPTALVQNKIDLLDDS--CIKNEEAEGLAKRLKLRFYRTSVK 149
Query: 94 TNLNVEQVFFSIA 106
+LNV +VF +A
Sbjct: 150 EDLNVSEVFKYLA 162
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 99 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 157
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 158 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 197
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 32 SYHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IK 86
S F ++ NW + +A ++ V++GNK D+ S+R V T + QA + G
Sbjct: 94 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQVSTEEAQAWCRDNGDYP 151
Query: 87 FFETSAKTNLNVEQVFFSIARDI 109
+FETSAK NV F R +
Sbjct: 152 YFETSAKDATNVAAAFEEAVRRV 174
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 39 RNWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYG-IKFF 88
+ W+ + +H + + VLVG K D+ + K+ ++ T++G+ L G +++
Sbjct: 98 KKWLPEL-KHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYL 156
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E S+KT NV+ VF + R
Sbjct: 157 ECSSKTQQNVKAVFDTAIR 175
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 32 SYHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IK 86
S F ++ NW + +A ++ V++GNK D+ S+R V T + QA + G
Sbjct: 92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQVSTEEAQAWCRDNGDYP 149
Query: 87 FFETSAKTNLNVEQVFFSIARDI 109
+FETSAK NV F R +
Sbjct: 150 YFETSAKDATNVAAAFEEAVRRV 172
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 97 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 155
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 156 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 81 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 139
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 140 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 105 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 105 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 136
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 85 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 143
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 144 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 105 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 26 CTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK--------- 75
C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 81 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 76 --GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 88 FLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 146
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 147 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 26 CTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK--------- 75
C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 81 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 139
Query: 76 --GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 140 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 26 CTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK--------- 75
C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 85 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 143
Query: 76 --GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 144 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 26 CTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK--------- 75
C ++ F ++R W + H N +LVG K D+ + K + K
Sbjct: 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 141
Query: 76 --GQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 109
G A+A E G +K+ E SA T ++ VF R +
Sbjct: 142 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 31 ASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESK-------RAVPTSKGQALADEY 83
ASY + ++ W+ + + A NV VLVG K D+ + K + +++G+ L +
Sbjct: 94 ASYE-NVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151
Query: 84 GIK-FFETSAKTNLNVEQVF 102
G + E S+KT NV+ VF
Sbjct: 152 GAAAYIECSSKTQQNVKAVF 171
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F +R W + H N +LVG K D+ + K + K
Sbjct: 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 288
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVF 102
G A+A E G +K+ E SA T ++ VF
Sbjct: 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F +R W + H N +LVG K D+ + K + K
Sbjct: 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 288
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVF 102
G A+A E G +K+ E SA T ++ VF
Sbjct: 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ F +R W + H N +LVG K D+ + K + K
Sbjct: 230 FLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTP 288
Query: 76 -----GQALADEYG-IKFFETSAKTNLNVEQVF 102
G A+A E G +K+ E SA T ++ VF
Sbjct: 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 39 RNWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVP--TSKGQALADEYGIK-FF 88
+ WI + +H + V VLVG K D+ + K+ AVP T +G+ L G +
Sbjct: 100 KKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158
Query: 89 ETSAKTNLNVEQVFFSIARDIKQ 111
E S+K+ NV+ VF + R + Q
Sbjct: 159 ECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 39 RNWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVP--TSKGQALADEYGIK-FF 88
+ WI + +H + V +LVG K D+ + K+ AVP T++G+ L G +
Sbjct: 98 KKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYI 156
Query: 89 ETSAKTNLNVEQVF 102
E S+KT NV+ VF
Sbjct: 157 ECSSKTQQNVKAVF 170
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 101 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 159
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 160 ECSAKTKDGVREVFEMATR 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 99 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 157
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 158 ECSAKTKDGVREVFEMATR 176
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 99 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 157
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 158 ECSAKTKDGVREVFEMATR 176
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 99 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 157
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 158 ECSAKTKDGVREVFEMATR 176
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 102 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 161 ECSAKTKDGVREVFEMATR 179
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 102 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 160
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 161 ECSAKTKDGVREVFEMATR 179
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 103 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 161
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 162 ECSAKTKDGVREVFEMATR 180
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 101 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 159
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 160 ECSAKTKDGVREVFEMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 100 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 158
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 159 ECSAKTKDGVREVFEMATR 177
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 99 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 157
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 158 ECSAKTKDGVREVFEMATR 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 101 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 159
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 160 ECSAKTKDGVREVFEMATR 178
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 100 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 158
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 159 ECSAKTKDGVREVFEMATR 177
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 97 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 155
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 156 ECSAKTKDGVREVFEMATR 174
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKR---------AVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE R V +G+ +A+ G +
Sbjct: 97 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM 155
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 156 ECSAKTKDGVREVFEMATR 174
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ + ++R W + H + +LVG K D+ + K + K
Sbjct: 78 FLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLKEKKLAP 136
Query: 76 -----GQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 109
G ALA E +K+ E SA T ++ VF R +
Sbjct: 137 ITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM---DESKRAVPTSKGQALADEYG---------IKFF 88
W + +H NV +LVGNK D+ + ++R + K + + E G +
Sbjct: 119 WTPEV-KHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177
Query: 89 ETSAKTNLNVEQVF 102
E SAKT V +VF
Sbjct: 178 ECSAKTKEGVREVF 191
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ + ++R W + H + +LVG K D+ + K + K
Sbjct: 84 FLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLKEKKLAP 142
Query: 76 -----GQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 109
G ALA E +K+ E SA T ++ VF R +
Sbjct: 143 ITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DESKRA---------VPTSKGQALADEY-GIKFF 88
W+ + +H NV +LV NK D+ DE R V T G+A+A +
Sbjct: 119 WVPEV-KHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177
Query: 89 ETSAKTNLNVEQVFFSIARDIKQR 112
E SAKT V +VF + R Q+
Sbjct: 178 ECSAKTKEGVREVFETATRAALQK 201
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 47 QHASDNVNKVLVGNKADM---DESKRAVPTSKGQALADEYG---------IKFFETSAKT 94
+H NV +LVGNK D+ + ++R + K + + E G + E SAKT
Sbjct: 104 KHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 163
Query: 95 NLNVEQVFFSIAR 107
V +VF R
Sbjct: 164 KEGVREVFEMATR 176
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM---DESKRAVPTSKGQALADEYG---------IKFF 88
W + +H NV +LVGNK D+ + ++R + K + + E G +
Sbjct: 119 WTPEV-KHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177
Query: 89 ETSAKTNLNVEQVFFSIAR 107
E SAKT V +VF R
Sbjct: 178 ECSAKTKEGVREVFEMATR 196
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 41 WIRNIEQHASDNVNKVLVGNKADM--DE---------SKRAVPTSKGQALADEYG-IKFF 88
W + +H NV +LVGNK D+ DE + V ++G+ +A+ G +
Sbjct: 99 WTPEV-KHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYM 157
Query: 89 ETSAKTNLNVEQVF 102
E SAKT V +VF
Sbjct: 158 ECSAKTKDGVREVF 171
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 23 FKYCTYKIASYHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK------ 75
F C ++ + ++R W + H + +LVG K D+ + K + K
Sbjct: 85 FLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLKEKKLAP 143
Query: 76 -----GQALADEY-GIKFFETSAKTNLNVEQVF 102
G ALA E +K+ E SA T ++ VF
Sbjct: 144 ITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|4HCE|A Chain A, Crystal Structure Of The Telomeric Saccharomyces
Cerevisiae Cdc13 Ob2 Domain
pdb|4HCE|B Chain B, Crystal Structure Of The Telomeric Saccharomyces
Cerevisiae Cdc13 Ob2 Domain
Length = 152
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 9 FIGVYPPYLAVLCRFKYCTYKI 30
+G+ PP A + FKYCT K+
Sbjct: 23 IVGMNPPQFASINEFKYCTLKL 44
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 77 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 115
Q +A+ Y + FE + TN++ + +++IA + AD
Sbjct: 95 QVVANHYELNIFENTVVTNISADDAYYTIATTTETYHAD 133
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 57 LVGNKADMDESK-RAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDI 109
LVG + + S R V ++ +AL AD ++ET A LNV++VF +A+ +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 36 SDIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQAL-ADEYGIKFFETSAK 93
S + + ++ + LVG + + S R V ++ +AL AD ++ET A
Sbjct: 92 SRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCAT 151
Query: 94 TNLNVEQVFFSIARDI 109
LNV++VF +A+ +
Sbjct: 152 YGLNVDRVFQEVAQKV 167
>pdb|2OM6|A Chain A, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
pdb|2OM6|B Chain B, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
Length = 235
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 20 LCRFKYCTYKIASYHFSDI-------RNWIRNIEQHASDNVNKVLVGN--------KADM 64
L F + KI+ H D+ RN I+ AS++ KVL G+ K D+
Sbjct: 22 LDEFSHQLAKISGLHIKDVANAVIEVRNEIKKXRAQASEDPRKVLTGSQEALAGKLKVDV 81
Query: 65 DESKRA 70
+ KRA
Sbjct: 82 ELVKRA 87
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 35 FSDIRNWIRNIEQHASDN---VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 91
F + W ++ D + VLV NK D+ + V Q A + FF+ S
Sbjct: 112 FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVS 171
Query: 92 AK-TNLNVEQVFFSIA 106
A + + F SIA
Sbjct: 172 ANPPGKDADAPFLSIA 187
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 50 SDNVNKVLVGNKADMDESK-RAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIAR 107
+ V VLVG + + + R + S+ + L+ D ++ET A LNVE+VF +A+
Sbjct: 117 ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ 176
Query: 108 DI 109
+
Sbjct: 177 KV 178
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 23 FKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65
F T + A++HFSD+R +R + + + +LV + A D
Sbjct: 88 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,182,624
Number of Sequences: 62578
Number of extensions: 144905
Number of successful extensions: 748
Number of sequences better than 100.0: 264
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 264
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)