BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032001
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/113 (87%), Positives = 108/113 (95%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++IRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKT
Sbjct: 103 FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKT 162
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 147
NLNVE+VFFSI RDIKQRL+DTDSR+EP+TIKI+Q DQA G GQA QKSACCG
Sbjct: 163 NLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSACCG 215
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/113 (84%), Positives = 105/113 (92%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++IRNWIRNIEQHASD+VNK+LVGNKADMDESKRAVP SKGQALADEYG+KFFETSAKT
Sbjct: 103 FNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKT 162
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 147
NLNVE+VFFSIA+DIKQRLADTD+R+EP TIKINQ DQ G QA QKSACCG
Sbjct: 163 NLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTSQATQKSACCG 215
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/114 (81%), Positives = 102/114 (89%), Gaps = 3/114 (2%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++IRNWIRNIEQHASDNVNK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKT
Sbjct: 103 FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKT 162
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPS-TIKINQPDQAGGVGQAAQKSACCG 147
NLNVE+VFFSIARDIKQRLAD+D+R E +I I DQ+G QAA KSACCG
Sbjct: 163 NLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSG--NQAAAKSACCG 214
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 98/112 (87%), Gaps = 1/112 (0%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++IRNW++NIEQHASDNVNK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKT
Sbjct: 103 FNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKT 162
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
NLNVE VF SIA+DIKQRL +TD+++EP IKI + D A A+KSACC
Sbjct: 163 NLNVENVFMSIAKDIKQRLTETDTKAEPQGIKITKQDTAAS-SSTAEKSACC 213
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%), Gaps = 1/113 (0%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++IRNW++NIEQHASD+VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT
Sbjct: 103 FNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPD-QAGGVGQAAQKSACC 146
N NVEQVF SIA+DIKQRL ++D+++EP IKI + D +KSACC
Sbjct: 163 NQNVEQVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 83/112 (74%), Gaps = 6/112 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK
Sbjct: 103 FGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKN 161
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
++NVE+ F S+A+DIK+R+ DT + +P + QP G +K ACC
Sbjct: 162 SINVEEAFISLAKDIKKRMIDTPNE-QPQVV---QPGTNLGANN-NKKKACC 208
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 11/112 (9%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK
Sbjct: 103 FGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKN 161
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
++NVE+ F +A+DIK+R+ DT N PD + +K+ CC
Sbjct: 162 SVNVEEAFIGLAKDIKKRMIDTP----------NDPDHTICITPNNKKNTCC 203
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 67/79 (84%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F+++RNW+RNIEQHASDNVNK+LVGNK D+ E KR V ++GQALADE+G +F+ETSAK
Sbjct: 101 FNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKD 160
Query: 95 NLNVEQVFFSIARDIKQRL 113
N++VE+ F ++A+D+ R+
Sbjct: 161 NVHVEEAFIAVAKDVLARM 179
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKV 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++A DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++A DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++A DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DMD+ KR VP KG+ +A E+GI+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++A DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DM E KR VP +KG+ +A E+GI+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVPKAKGEQIAREHGIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++A DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKRDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+NVE FF++ARDIK ++L + +KI PDQ
Sbjct: 155 NINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIKQRL 113
N+NVE FF++ARDIK ++
Sbjct: 155 NINVENAFFTLARDIKAKM 173
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIKQRL 113
N+NVE FF++ARDIK ++
Sbjct: 155 NINVENAFFTLARDIKAKM 173
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+NVE FF++ARDIK ++L + +KI PDQ
Sbjct: 155 NINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+NVE FF++ARDIK ++L + +KI PDQ
Sbjct: 155 NINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+NVE FF++ARDIK ++L + +KI PDQ
Sbjct: 155 NINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKS 154
Query: 95 NLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQP 130
+ NVE+ FF++ARDI +++ D++S +KI +
Sbjct: 155 STNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITES 194
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKS 154
Query: 95 NLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQP 130
+ NVE+ FF++ARDI +++ D++S +KI +
Sbjct: 155 STNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITES 194
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 72/99 (72%), Gaps = 5/99 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKS 154
Query: 95 NLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 129
+ NVE+ FF++ARDI +++ D++S +KI +
Sbjct: 155 STNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 71/102 (69%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNWIRNIE+HAS +V K+++GNK D+++ KR V +G+ LA +YGIKF ETSAK
Sbjct: 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+NVE F+++ARDIK ++L + +KI PDQ
Sbjct: 155 NINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F ++R W N+EQHAS+NV K+L+GNK D E +R V +GQALADE G+KF E SAKT
Sbjct: 97 FDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKT 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDS 118
N+NV++ FF++AR+IK++ D ++
Sbjct: 156 NVNVDEAFFTLAREIKKQKIDAEN 179
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 72/99 (72%), Gaps = 5/99 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF ETSAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKS 154
Query: 95 NLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 129
+ NVE+ FF++ARDI +++ D++S +KI +
Sbjct: 155 SANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 72/99 (72%), Gaps = 5/99 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM++ KR V +G+ LA +YGIKF E SAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLEASAKS 154
Query: 95 NLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 129
++NVE+ FF++ARDI +++ D++S +KI +
Sbjct: 155 SMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NWIRNIE+HAS +V ++++GNK DM+E KR V +G+ LA +YGIKF ETSAK+
Sbjct: 96 FDNIKNWIRNIEEHASSDVERMILGNKCDMNE-KRQVSKERGEKLAIDYGIKFLETSAKS 154
Query: 95 NLNVEQVFFSIARDIKQRL 113
++NVE+ F ++ARDI +L
Sbjct: 155 SINVEEAFITLARDIMTKL 173
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 12/115 (10%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++ASDNVNK+LVGNK+D+ E+ RA+P +A ADE GI F ETSAK
Sbjct: 96 FNNVKQWLSEIDRYASDNVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKD 154
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 146
NVEQ F +++ IK+R+A + + P T++I QP AQK+ CC
Sbjct: 155 ATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQP--------VAQKNGCC 201
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 6/102 (5%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +IRNW+RNIE+HAS +V K+++GNK D ++ KR V +G+ LA +GIKF ETSAK
Sbjct: 96 FENIRNWVRNIEEHASPDVEKMILGNKCDAND-KRQVSREQGEKLAASFGIKFMETSAKA 154
Query: 95 NLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 132
N+N+E FF++ARDIK ++L + +KI PDQ
Sbjct: 155 NINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 77/115 (66%), Gaps = 12/115 (10%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++AS+NVNK+LVGNK D+ E+ R V G+ALADE GI F ETSAK
Sbjct: 96 FNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKD 154
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 146
NVE+ F ++A +IK R+A + S+P+T+++ QP AQ+S+CC
Sbjct: 155 ATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQP--------VAQQSSCC 201
>sp|P35281|RAB10_RAT Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=1 SV=1
Length = 200
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 8/112 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI+QHA+++V ++L+ NK DMD KR VP KG+ +A E+ I+FFETSAK
Sbjct: 97 FENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+N+E+ F ++ DI ++ + SE D + G G KS CC
Sbjct: 156 NINIEKAFLTLPEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200
>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1
Length = 200
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I W+RNI++HA+++V ++L+GNK DM E KR V SKG+ +A E+ I+FFETSAK
Sbjct: 97 FENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKA 155
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVG 137
N+N+E+ F ++A DI Q+ EP ++ GG G
Sbjct: 156 NINIEKAFLTLAEDILQKTP----VKEPDRENVDISTTGGGTG 194
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 7/112 (6%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++I NW +N++ +A++ V +LVGNK D+DE KR V T +GQALAD++GI F E S+KT
Sbjct: 99 FNNIENWYQNVQSYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKT 157
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 146
N+NVE+ F+S+A I+ +A T +E + IN + G+ S CC
Sbjct: 158 NINVEECFYSVATRIRDTVAKTKG-NESGSGGINIAE-----GEENSASKCC 203
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 76/117 (64%), Gaps = 12/117 (10%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++A+++V K+L+GNK DM ESK V T G+ALADE GI F ETSAK
Sbjct: 96 FNNVKQWLSEIDRYANESVCKLLIGNKNDMVESK-VVSTETGRALADELGIPFLETSAKD 154
Query: 95 NLNVEQVFFSIARDIKQRLA---DTDSRSEPSTIKI-NQPDQAGGVGQAAQKSACCG 147
++NVEQ F +IA +IK+++ + + S P T+++ QP Q G CCG
Sbjct: 155 SINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGG-------CCG 204
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++ASDNVNK+LVGNK+D+ +K V T +A ADE GI F ETSAK
Sbjct: 96 FNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANK-VVATETAKAFADEMGIPFMETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 146
NV+Q F ++A IK R+A + + P+T++I QP QK++CC
Sbjct: 155 ATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQP--------VNQKTSCC 201
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++A +NVNK+LVGNK D+ +++ V +++ ++ A+ YGI F ETSAK
Sbjct: 98 FTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKN 156
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSAC 145
NVE+ F S+ARDIK RLAD +P + I ++ G +KS C
Sbjct: 157 ATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGG---KKSFC 204
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++AS+NVNK+LVGNK+D+ SK+ V S +A ADE GI F ETSAK
Sbjct: 96 FNNVKQWLNEIDRYASENVNKLLVGNKSDL-TSKKVVEYSVAKAFADEIGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQA--AQKSACC 146
NVEQ F ++A +IK R+A S+P K P G+ ++ S+CC
Sbjct: 155 ATNVEQAFMTMAAEIKNRMA-----SQPIPTKAGGPVVRPQEGKPINSKSSSCC 203
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 12/124 (9%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
TY + F++++ W+ I+++AS+NVNK+LVGNK D+ S++ V T +A ADE G
Sbjct: 86 VTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-TSQKVVSTETAKAFADELG 144
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS-RSEPSTIKI-NQPDQAGGVGQAAQK 142
I F ETSAK NVE+ F ++ IK R+A + S+P T++I QP Q+
Sbjct: 145 IPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQP--------VNQQ 196
Query: 143 SACC 146
S CC
Sbjct: 197 SGCC 200
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 12/124 (9%)
Query: 26 CTYKIASYH-FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84
TY + F++++ W+ I+++AS+NVNK+LVGNK D+ S++ V T +A ADE G
Sbjct: 86 VTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDL-TSQKVVSTETAKAFADELG 144
Query: 85 IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS-RSEPSTIKI-NQPDQAGGVGQAAQK 142
I F ETSAK NVE+ F ++ IK R+A + ++P T++I QP Q+
Sbjct: 145 IPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQP--------VNQQ 196
Query: 143 SACC 146
S CC
Sbjct: 197 SGCC 200
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 9/114 (7%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD+ GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLADTD--SRSEPSTIKINQPDQAGGVGQAAQKSACC 146
NVEQ F ++A +IK R+ S S+PS +KIN +A K CC
Sbjct: 158 ATNVEQAFMTMAAEIKNRMGPITAASDSKPS-VKINSSTPV-----SANKGGCC 205
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F +I+NW+++I+++AS V ++L+GNK DM E+KR V + LA E+GI+FFETSAK+
Sbjct: 96 FENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKS 154
Query: 95 NLNVEQVFFSIARDI--KQRLADTDSRSEPSTIKINQPDQ 132
++NV++ F S+ARDI K + + S+PS+ + D+
Sbjct: 155 SMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSDK 194
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 96 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVG 137
NVEQ F ++A +IK+R+ T SE S + I + P ++ G G
Sbjct: 155 ATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKSSGGG 200
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ T +E S +KI Q+GG
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ T +E S +KI Q+GG
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ T +E S +KI Q+GG
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ T +E S +KI Q+GG
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK
Sbjct: 99 FNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKN 157
Query: 95 NLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ T +E S +KI Q+GG
Sbjct: 158 ATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGG 202
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
F++++ W+ I+++AS+NVNK+LVGNK+D+ K+ V +A ADE GI F ETSAK
Sbjct: 96 FNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLA 114
NVEQ F ++A +IK R+A
Sbjct: 155 ATNVEQAFMTMAAEIKNRMA 174
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+++++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK
Sbjct: 96 YANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLA-DTDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ S E +KI+ QAGG
Sbjct: 155 ATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKQAGG 198
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Query: 35 FSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94
+++++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK
Sbjct: 96 YANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKN 154
Query: 95 NLNVEQVFFSIARDIKQRLA-DTDSRSEPSTIKINQP--DQAGG 135
NVEQ F ++A +IK+R+ S E +KI+ QAGG
Sbjct: 155 ATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKQAGG 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,109,791
Number of Sequences: 539616
Number of extensions: 1876924
Number of successful extensions: 6726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 5626
Number of HSP's gapped (non-prelim): 790
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)