Query 032001
Match_columns 149
No_of_seqs 105 out of 1157
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 5E-27 1.7E-31 169.6 12.2 107 5-113 71-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.9 2.4E-20 8.2E-25 132.3 14.6 107 5-113 66-173 (206)
3 2bov_A RAla, RAS-related prote 99.8 1.3E-19 4.3E-24 128.1 12.6 107 5-113 71-179 (206)
4 1vg8_A RAS-related protein RAB 99.8 1.1E-19 3.9E-24 128.5 10.1 135 5-147 66-207 (207)
5 3cpj_B GTP-binding protein YPT 99.8 9.4E-19 3.2E-23 125.8 11.9 107 5-113 71-178 (223)
6 2fu5_C RAS-related protein RAB 99.8 3.9E-18 1.3E-22 118.5 12.6 108 5-114 66-174 (183)
7 3tkl_A RAS-related protein RAB 99.8 1.2E-17 4.3E-22 116.9 14.5 108 5-114 74-182 (196)
8 3dz8_A RAS-related protein RAB 99.8 4.2E-18 1.4E-22 119.5 11.7 108 5-114 81-189 (191)
9 2a5j_A RAS-related protein RAB 99.8 1.5E-17 5.1E-22 116.6 14.4 108 5-114 79-187 (191)
10 2hup_A RAS-related protein RAB 99.8 7.9E-18 2.7E-22 119.3 13.0 107 5-113 87-195 (201)
11 2gf9_A RAS-related protein RAB 99.8 2.2E-17 7.4E-22 115.5 14.3 107 5-113 80-187 (189)
12 3q72_A GTP-binding protein RAD 99.8 1.2E-17 4E-22 114.1 12.4 106 5-112 58-165 (166)
13 2ew1_A RAS-related protein RAB 99.8 1.3E-17 4.4E-22 118.6 12.5 107 5-113 84-191 (201)
14 4dsu_A GTPase KRAS, isoform 2B 99.8 3.9E-17 1.3E-21 113.5 14.4 107 5-114 61-169 (189)
15 2fn4_A P23, RAS-related protei 99.7 3.7E-17 1.3E-21 112.8 13.5 108 5-114 66-175 (181)
16 3kkq_A RAS-related protein M-R 99.7 4.4E-17 1.5E-21 113.1 13.8 105 5-111 75-182 (183)
17 3cbq_A GTP-binding protein REM 99.7 3E-17 1E-21 115.9 13.1 104 7-112 83-189 (195)
18 1zbd_A Rabphilin-3A; G protein 99.7 3.2E-17 1.1E-21 115.8 13.3 110 5-116 66-176 (203)
19 2gf0_A GTP-binding protein DI- 99.7 7.6E-18 2.6E-22 118.3 9.7 104 5-111 65-171 (199)
20 2g3y_A GTP-binding protein GEM 99.7 1.2E-17 4.2E-22 119.9 10.6 102 9-112 101-204 (211)
21 3q85_A GTP-binding protein REM 99.7 3.8E-17 1.3E-21 111.8 12.4 106 5-112 60-168 (169)
22 3tw8_B RAS-related protein RAB 99.7 6.9E-17 2.4E-21 111.4 13.9 107 5-114 67-174 (181)
23 2g6b_A RAS-related protein RAB 99.7 4.8E-17 1.6E-21 112.4 13.0 106 5-112 69-175 (180)
24 2efe_B Small GTP-binding prote 99.7 3.7E-17 1.3E-21 113.1 12.4 106 5-112 70-176 (181)
25 3t5g_A GTP-binding protein RHE 99.7 2.9E-17 9.8E-22 113.8 11.8 107 5-113 63-171 (181)
26 2o52_A RAS-related protein RAB 99.7 3.9E-17 1.3E-21 115.5 12.7 108 5-114 83-191 (200)
27 1z0f_A RAB14, member RAS oncog 99.7 3.5E-17 1.2E-21 112.7 12.2 104 5-110 73-177 (179)
28 2bme_A RAB4A, RAS-related prot 99.7 3.5E-17 1.2E-21 113.8 12.2 109 5-115 68-177 (186)
29 1g16_A RAS-related protein SEC 99.7 7.1E-17 2.4E-21 110.3 13.5 105 5-112 61-166 (170)
30 2oil_A CATX-8, RAS-related pro 99.7 6.6E-17 2.2E-21 113.3 13.3 108 5-114 83-191 (193)
31 1r2q_A RAS-related protein RAB 99.7 2.8E-17 9.6E-22 112.2 10.9 103 5-109 64-167 (170)
32 2cjw_A GTP-binding protein GEM 99.7 1.2E-16 4.1E-21 112.6 14.3 103 9-113 70-174 (192)
33 2j0v_A RAC-like GTP-binding pr 99.7 1.2E-17 3.9E-22 118.9 9.1 105 5-112 66-181 (212)
34 1z08_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 112.5 10.6 105 5-111 64-169 (170)
35 3q3j_B RHO-related GTP-binding 99.7 3.1E-17 1.1E-21 117.4 11.3 107 5-113 84-205 (214)
36 2nzj_A GTP-binding protein REM 99.7 7.2E-17 2.5E-21 110.9 12.7 103 9-113 67-171 (175)
37 2il1_A RAB12; G-protein, GDP, 99.7 5.3E-17 1.8E-21 114.1 11.3 105 5-111 84-190 (192)
38 1z0j_A RAB-22, RAS-related pro 99.7 1.2E-16 4.2E-21 109.1 12.9 103 5-109 64-167 (170)
39 3oes_A GTPase rhebl1; small GT 99.7 4.6E-17 1.6E-21 115.1 10.9 107 5-113 81-189 (201)
40 3t1o_A Gliding protein MGLA; G 99.7 5.1E-17 1.7E-21 113.6 10.9 105 5-114 83-195 (198)
41 2fg5_A RAB-22B, RAS-related pr 99.7 5E-17 1.7E-21 114.1 10.7 105 5-111 81-186 (192)
42 1u8z_A RAS-related protein RAL 99.7 7.7E-17 2.6E-21 109.7 11.3 105 5-111 61-167 (168)
43 2hxs_A RAB-26, RAS-related pro 99.7 7.4E-17 2.5E-21 111.2 11.3 106 5-112 65-174 (178)
44 3reg_A RHO-like small GTPase; 99.7 1.2E-16 4.2E-21 112.1 12.5 106 5-112 80-189 (194)
45 1ek0_A Protein (GTP-binding pr 99.7 5.4E-17 1.9E-21 110.8 10.3 103 5-109 61-167 (170)
46 3bc1_A RAS-related protein RAB 99.7 1.3E-16 4.4E-21 111.1 12.3 108 5-114 79-188 (195)
47 1c1y_A RAS-related protein RAP 99.7 1.8E-16 6.2E-21 108.0 12.5 103 5-109 60-165 (167)
48 2a9k_A RAS-related protein RAL 99.7 1.5E-16 5.2E-21 110.2 12.2 107 5-113 75-183 (187)
49 3cph_A RAS-related protein SEC 99.7 5E-16 1.7E-20 110.1 15.1 107 5-114 78-185 (213)
50 2q3h_A RAS homolog gene family 99.7 2.9E-16 1E-20 110.6 13.4 107 5-113 77-197 (201)
51 2y8e_A RAB-protein 6, GH09086P 99.7 1.1E-16 3.7E-21 110.2 10.8 104 5-110 72-176 (179)
52 1ky3_A GTP-binding protein YPT 99.7 2E-16 6.8E-21 109.2 12.0 108 5-113 67-180 (182)
53 1z2a_A RAS-related protein RAB 99.7 1.8E-16 6.2E-21 108.1 11.5 104 5-111 63-167 (168)
54 2atx_A Small GTP binding prote 99.7 4.3E-16 1.5E-20 109.2 13.7 104 5-110 75-192 (194)
55 4djt_A GTP-binding nuclear pro 99.7 1.5E-16 5.1E-21 113.6 11.4 107 5-113 70-177 (218)
56 3c5c_A RAS-like protein 12; GD 99.7 1.1E-16 3.6E-21 112.2 10.3 103 5-110 78-185 (187)
57 2f7s_A C25KG, RAS-related prot 99.7 6.4E-17 2.2E-21 115.4 9.0 108 6-115 94-203 (217)
58 3ihw_A Centg3; RAS, centaurin, 99.7 4E-16 1.4E-20 109.1 12.8 97 16-113 82-182 (184)
59 2yc2_C IFT27, small RAB-relate 99.7 8.9E-17 3.1E-21 113.4 9.5 107 5-113 82-194 (208)
60 2p5s_A RAS and EF-hand domain 99.7 1.3E-16 4.6E-21 112.5 10.4 105 5-110 86-196 (199)
61 1kao_A RAP2A; GTP-binding prot 99.7 2.1E-16 7.2E-21 107.4 10.6 104 5-110 60-165 (167)
62 1x3s_A RAS-related protein RAB 99.7 6.7E-16 2.3E-20 107.8 13.1 105 5-112 73-179 (195)
63 1z06_A RAS-related protein RAB 99.7 2.9E-16 1E-20 109.7 10.6 104 5-110 78-187 (189)
64 3clv_A RAB5 protein, putative; 99.7 2E-15 6.9E-20 105.6 14.5 104 5-113 102-206 (208)
65 1wms_A RAB-9, RAB9, RAS-relate 99.7 7.5E-16 2.6E-20 106.1 11.9 104 5-111 65-174 (177)
66 2ce2_X GTPase HRAS; signaling 99.7 1.7E-15 6E-20 102.6 13.0 104 5-111 60-165 (166)
67 2iwr_A Centaurin gamma 1; ANK 99.7 1.6E-15 5.5E-20 104.7 13.0 99 14-113 67-171 (178)
68 1m7b_A RND3/RHOE small GTP-bin 99.7 4.6E-16 1.6E-20 108.4 10.4 105 5-111 64-183 (184)
69 3bwd_D RAC-like GTP-binding pr 99.7 3.7E-16 1.3E-20 108.1 9.8 103 5-110 65-180 (182)
70 2atv_A RERG, RAS-like estrogen 99.7 1.2E-15 4.1E-20 107.2 12.2 101 10-112 89-192 (196)
71 2gco_A H9, RHO-related GTP-bin 99.7 1.6E-15 5.4E-20 107.2 12.8 103 5-110 82-199 (201)
72 3con_A GTPase NRAS; structural 99.7 2E-15 6.9E-20 105.3 13.0 105 5-112 78-184 (190)
73 2j1l_A RHO-related GTP-binding 99.7 6.6E-16 2.3E-20 110.3 10.5 105 5-112 91-210 (214)
74 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.9E-16 2E-20 107.2 9.9 104 5-111 62-180 (186)
75 1gwn_A RHO-related GTP-binding 99.7 8.8E-16 3E-20 109.3 10.7 105 5-111 85-204 (205)
76 2erx_A GTP-binding protein DI- 99.7 6.9E-16 2.4E-20 105.4 9.4 103 5-109 60-165 (172)
77 3l0i_B RAS-related protein RAB 99.6 1.6E-17 5.6E-22 117.2 1.2 105 5-111 91-196 (199)
78 2fv8_A H6, RHO-related GTP-bin 99.6 2.9E-15 9.8E-20 106.3 12.3 105 5-112 82-201 (207)
79 1f6b_A SAR1; gtpases, N-termin 99.6 9.4E-16 3.2E-20 108.4 9.6 100 5-108 78-196 (198)
80 4bas_A ADP-ribosylation factor 99.6 3.8E-15 1.3E-19 104.4 11.8 105 5-113 72-191 (199)
81 3gj0_A GTP-binding nuclear pro 99.6 1.2E-15 4E-20 109.3 8.9 103 5-112 73-176 (221)
82 2h57_A ADP-ribosylation factor 99.6 6.1E-15 2.1E-19 103.1 11.4 103 5-111 76-187 (190)
83 4gzl_A RAS-related C3 botulinu 99.6 2.1E-15 7E-20 107.0 9.0 102 5-109 87-203 (204)
84 1m2o_B GTP-binding protein SAR 99.6 2.3E-15 7.7E-20 105.7 8.8 100 5-108 76-189 (190)
85 3c5h_A Glucocorticoid receptor 99.6 9.4E-16 3.2E-20 112.7 7.0 102 5-109 127-253 (255)
86 1r8s_A ADP-ribosylation factor 99.6 5.7E-15 2E-19 100.4 9.2 103 5-111 53-162 (164)
87 1fzq_A ADP-ribosylation factor 99.6 3.9E-15 1.3E-19 103.7 8.4 103 5-111 69-178 (181)
88 1zj6_A ADP-ribosylation factor 99.6 1.7E-14 5.7E-19 100.6 11.4 103 5-111 69-178 (187)
89 1upt_A ARL1, ADP-ribosylation 99.6 2.2E-15 7.4E-20 103.1 6.7 103 5-111 60-169 (171)
90 1u0l_A Probable GTPase ENGC; p 99.6 4.3E-15 1.5E-19 111.8 8.3 95 6-107 71-169 (301)
91 2h17_A ADP-ribosylation factor 99.6 9.6E-15 3.3E-19 101.4 9.2 100 5-108 74-180 (181)
92 1ksh_A ARF-like protein 2; sma 99.6 1.2E-14 4.1E-19 101.0 9.6 103 5-111 71-180 (186)
93 2wkq_A NPH1-1, RAS-related C3 99.6 2.1E-14 7E-19 108.2 11.0 105 5-111 212-330 (332)
94 2b6h_A ADP-ribosylation factor 99.6 1.6E-15 5.3E-20 106.7 4.5 102 5-110 82-190 (192)
95 3llu_A RAS-related GTP-binding 99.6 1.2E-14 4.2E-19 102.2 8.8 102 5-109 78-195 (196)
96 1moz_A ARL1, ADP-ribosylation 99.6 3.5E-14 1.2E-18 98.2 10.8 104 5-112 71-181 (183)
97 2x77_A ADP-ribosylation factor 99.6 4.1E-15 1.4E-19 103.8 5.9 104 5-112 75-185 (189)
98 2f9l_A RAB11B, member RAS onco 99.5 2.4E-13 8.3E-18 95.7 14.5 108 5-114 63-171 (199)
99 1zd9_A ADP-ribosylation factor 99.5 1.4E-14 4.7E-19 101.3 7.7 102 5-110 76-184 (188)
100 2zej_A Dardarin, leucine-rich 99.5 7.1E-15 2.4E-19 102.5 5.1 105 5-112 65-179 (184)
101 3th5_A RAS-related C3 botulinu 99.3 1.3E-15 4.6E-20 107.6 0.0 102 5-109 87-203 (204)
102 1cip_A Protein (guanine nucleo 99.5 2.3E-14 8E-19 110.0 6.0 107 5-112 202-345 (353)
103 1oix_A RAS-related protein RAB 99.5 6.1E-13 2.1E-17 93.3 12.8 103 5-109 87-190 (191)
104 3o47_A ADP-ribosylation factor 99.5 1.5E-13 5.2E-18 104.5 9.7 103 5-111 218-327 (329)
105 2xtz_A Guanine nucleotide-bind 99.5 5.1E-14 1.7E-18 108.2 5.8 107 5-112 192-346 (354)
106 3lvq_E ARF-GAP with SH3 domain 99.5 2.7E-13 9.1E-18 108.0 9.8 104 5-112 375-485 (497)
107 2yv5_A YJEQ protein; hydrolase 99.4 2.3E-13 8E-18 102.4 7.4 97 6-107 66-165 (302)
108 2wji_A Ferrous iron transport 99.4 2.4E-13 8.2E-18 93.1 6.9 92 11-109 71-163 (165)
109 3r7w_B Gtpase2, GTP-binding pr 99.4 6.9E-14 2.4E-18 106.2 3.2 103 5-111 55-174 (331)
110 2cxx_A Probable GTP-binding pr 99.4 8.5E-13 2.9E-17 91.6 7.9 103 6-113 65-186 (190)
111 3ohm_A Guanine nucleotide-bind 99.4 1.3E-13 4.4E-18 104.9 3.8 106 5-112 176-319 (327)
112 1azs_C GS-alpha; complex (lyas 99.4 5.8E-13 2E-17 103.7 7.1 106 5-112 226-386 (402)
113 2qu8_A Putative nucleolar GTP- 99.4 3.1E-12 1E-16 92.0 10.4 94 18-113 106-207 (228)
114 2fh5_B SR-beta, signal recogni 99.4 2.1E-12 7.1E-17 91.6 9.2 100 6-108 64-213 (214)
115 1zcb_A G alpha I/13; GTP-bindi 99.4 3.8E-13 1.3E-17 103.6 5.4 107 5-112 210-354 (362)
116 3r7w_A Gtpase1, GTP-binding pr 99.3 2.4E-12 8.1E-17 97.0 7.2 97 10-109 71-179 (307)
117 3dpu_A RAB family protein; roc 99.3 2.8E-12 9.7E-17 103.1 8.0 102 5-111 107-208 (535)
118 2wjg_A FEOB, ferrous iron tran 99.3 2.1E-12 7.1E-17 89.6 6.2 95 11-112 75-170 (188)
119 4dcu_A GTP-binding protein ENG 99.3 6.7E-12 2.3E-16 99.2 9.5 103 6-112 263-370 (456)
120 2lkc_A Translation initiation 99.3 9.1E-12 3.1E-16 85.4 8.9 100 5-112 64-172 (178)
121 1svi_A GTP-binding protein YSX 99.3 4.2E-12 1.5E-16 88.5 6.3 98 6-109 89-193 (195)
122 3pqc_A Probable GTP-binding pr 99.3 4.2E-12 1.4E-16 88.3 6.2 99 6-111 88-194 (195)
123 4fid_A G protein alpha subunit 99.3 1.6E-12 5.4E-17 99.3 3.4 106 5-111 170-328 (340)
124 3iev_A GTP-binding protein ERA 99.3 1.5E-11 5.1E-16 92.7 8.2 99 8-111 81-182 (308)
125 2gj8_A MNME, tRNA modification 99.2 3.2E-12 1.1E-16 88.2 2.8 85 16-110 80-165 (172)
126 2e87_A Hypothetical protein PH 99.2 1.1E-10 3.8E-15 89.5 11.0 90 19-112 245-337 (357)
127 3b1v_A Ferrous iron uptake tra 99.2 3.1E-11 1.1E-15 89.6 7.1 92 11-109 70-162 (272)
128 2hjg_A GTP-binding protein ENG 99.2 9.4E-11 3.2E-15 92.2 10.1 100 7-112 244-350 (436)
129 3a1s_A Iron(II) transport prot 99.2 8.5E-11 2.9E-15 86.5 7.8 90 14-110 76-166 (258)
130 1lnz_A SPO0B-associated GTP-bi 99.2 1.2E-10 4.1E-15 89.0 8.8 99 8-111 222-330 (342)
131 4dhe_A Probable GTP-binding pr 99.2 3.6E-11 1.2E-15 85.6 5.6 101 7-112 100-212 (223)
132 2dyk_A GTP-binding protein; GT 99.1 1.8E-11 6E-16 82.6 3.0 89 10-109 70-160 (161)
133 3l82_B F-box only protein 4; T 99.1 8.6E-11 2.9E-15 83.9 6.0 102 5-110 111-222 (227)
134 3h2y_A GTPase family protein; 99.1 1.8E-10 6.1E-15 88.9 8.2 97 5-109 55-158 (368)
135 1nrj_B SR-beta, signal recogni 99.1 5.6E-11 1.9E-15 84.4 4.4 92 5-97 64-170 (218)
136 3cb4_D GTP-binding protein LEP 99.0 2.2E-09 7.6E-14 87.4 10.1 99 6-112 81-183 (599)
137 3qq5_A Small GTP-binding prote 99.0 4E-10 1.4E-14 88.4 4.5 90 14-112 108-197 (423)
138 2ywe_A GTP-binding protein LEP 99.0 2.3E-09 7.8E-14 87.3 9.1 97 7-111 84-184 (600)
139 3k53_A Ferrous iron transport 99.0 1.2E-09 4.2E-14 80.5 6.9 94 12-111 72-166 (271)
140 3sjy_A Translation initiation 99.0 2E-09 7E-14 83.7 8.3 100 6-110 85-191 (403)
141 3ec1_A YQEH GTPase; atnos1, at 98.9 1.5E-09 5E-14 83.8 7.0 96 5-109 57-160 (369)
142 3iby_A Ferrous iron transport 98.9 3.6E-10 1.2E-14 83.1 3.4 89 12-108 74-164 (256)
143 3l2o_B F-box only protein 4; s 98.9 9.7E-10 3.3E-14 81.9 5.5 100 6-110 197-307 (312)
144 3i8s_A Ferrous iron transport 98.9 5.9E-10 2E-14 82.6 3.1 85 19-110 84-168 (274)
145 3gee_A MNME, tRNA modification 98.9 7.6E-09 2.6E-13 82.3 9.6 88 16-110 309-397 (476)
146 1xzp_A Probable tRNA modificat 98.8 1.7E-08 5.7E-13 80.4 10.1 87 14-111 318-405 (482)
147 2qtf_A Protein HFLX, GTP-bindi 98.8 1.4E-08 4.6E-13 78.3 9.3 92 20-112 257-355 (364)
148 1mky_A Probable GTP-binding pr 98.8 5.3E-08 1.8E-12 76.5 12.0 99 8-112 251-356 (439)
149 3izy_P Translation initiation 98.8 2E-09 6.7E-14 86.7 3.3 101 5-110 61-167 (537)
150 1mky_A Probable GTP-binding pr 98.8 4.9E-09 1.7E-13 82.4 5.3 94 9-112 71-167 (439)
151 1wf3_A GTP-binding protein; GT 98.8 1.7E-09 5.7E-14 81.3 2.3 93 9-110 76-172 (301)
152 3tr5_A RF-3, peptide chain rel 98.8 2.9E-08 9.7E-13 79.9 9.5 55 6-65 92-147 (528)
153 1wb1_A Translation elongation 98.7 1.6E-08 5.5E-13 80.5 6.6 99 7-110 84-188 (482)
154 2aka_B Dynamin-1; fusion prote 98.7 1.4E-09 4.6E-14 80.8 0.1 99 8-110 150-252 (299)
155 1s0u_A EIF-2-gamma, translatio 98.7 3.3E-08 1.1E-12 77.0 7.1 83 21-110 105-197 (408)
156 2qag_A Septin-2, protein NEDD5 98.7 3.1E-09 1E-13 81.7 1.1 101 7-113 113-235 (361)
157 1g7s_A Translation initiation 98.7 2.1E-07 7.1E-12 75.8 11.6 102 6-112 80-219 (594)
158 1udx_A The GTP-binding protein 98.7 1.2E-07 4E-12 74.2 9.6 100 10-112 223-326 (416)
159 2hjg_A GTP-binding protein ENG 98.7 2.1E-08 7E-13 78.8 5.0 93 8-111 71-165 (436)
160 2c78_A Elongation factor TU-A; 98.6 1.9E-08 6.5E-13 78.3 4.5 98 7-109 86-210 (405)
161 3geh_A MNME, tRNA modification 98.6 4.5E-08 1.5E-12 77.6 6.6 81 20-111 303-384 (462)
162 1ega_A Protein (GTP-binding pr 98.6 1.4E-08 4.9E-13 76.1 3.4 95 10-110 79-174 (301)
163 2elf_A Protein translation elo 98.6 7.9E-08 2.7E-12 74.1 6.5 99 7-112 71-181 (370)
164 1zun_B Sulfate adenylate trans 98.6 8E-08 2.7E-12 75.4 6.1 94 6-103 114-216 (434)
165 1kk1_A EIF2gamma; initiation o 98.6 7.3E-08 2.5E-12 75.1 5.7 83 21-110 107-199 (410)
166 2ged_A SR-beta, signal recogni 98.6 6E-07 2E-11 62.1 9.7 61 5-65 100-169 (193)
167 1zo1_I IF2, translation initia 98.6 1.1E-08 3.7E-13 81.8 0.9 98 5-107 60-163 (501)
168 3p26_A Elongation factor 1 alp 98.6 1.6E-07 5.6E-12 74.6 7.5 92 6-100 121-227 (483)
169 1jny_A EF-1-alpha, elongation 98.6 1.3E-08 4.3E-13 80.1 1.1 96 6-103 94-205 (435)
170 1d2e_A Elongation factor TU (E 98.5 4.9E-08 1.7E-12 75.8 3.9 98 7-110 77-194 (397)
171 3j2k_7 ERF3, eukaryotic polype 98.5 3.3E-07 1.1E-11 72.1 7.6 93 6-103 105-217 (439)
172 2wsm_A Hydrogenase expression/ 98.5 2.8E-07 9.5E-12 65.3 6.2 87 16-111 125-214 (221)
173 1r5b_A Eukaryotic peptide chai 98.5 3.5E-08 1.2E-12 78.2 1.2 95 6-102 131-243 (467)
174 2dy1_A Elongation factor G; tr 98.4 6.2E-07 2.1E-11 73.9 8.4 56 5-65 83-139 (665)
175 4dcu_A GTP-binding protein ENG 98.4 1.1E-07 3.6E-12 75.2 3.2 95 7-111 90-185 (456)
176 2qnr_A Septin-2, protein NEDD5 98.4 7.5E-08 2.6E-12 72.2 2.1 101 7-112 94-215 (301)
177 3avx_A Elongation factor TS, e 98.4 1.4E-07 4.8E-12 81.6 4.0 99 7-110 370-485 (1289)
178 1f60_A Elongation factor EEF1A 98.4 4.9E-07 1.7E-11 71.5 5.9 90 7-101 96-202 (458)
179 1puj_A YLQF, conserved hypothe 98.3 1.2E-06 3.9E-11 65.2 6.5 83 15-112 19-107 (282)
180 2hf9_A Probable hydrogenase ni 98.3 6.7E-07 2.3E-11 63.5 5.0 58 53-111 165-224 (226)
181 2xtp_A GTPase IMAP family memb 98.3 5.8E-07 2E-11 65.5 4.7 93 16-112 102-209 (260)
182 3izq_1 HBS1P, elongation facto 98.3 5.5E-07 1.9E-11 73.6 4.8 93 7-101 256-362 (611)
183 3t5d_A Septin-7; GTP-binding p 98.3 1.8E-07 6.2E-12 69.0 1.4 68 39-111 135-204 (274)
184 1dar_A EF-G, elongation factor 98.2 3.3E-06 1.1E-10 69.9 8.5 54 7-65 88-142 (691)
185 3lxx_A GTPase IMAP family memb 98.2 1.9E-06 6.4E-11 62.0 6.1 100 9-112 102-215 (239)
186 3lxw_A GTPase IMAP family memb 98.2 5.6E-06 1.9E-10 60.1 8.3 92 19-112 104-209 (247)
187 2h5e_A Peptide chain release f 98.2 1E-05 3.5E-10 65.1 9.4 54 7-65 93-147 (529)
188 3p32_A Probable GTPase RV1496/ 98.1 9.6E-07 3.3E-11 67.6 3.1 83 19-111 191-284 (355)
189 2j69_A Bacterial dynamin-like 98.1 2.7E-06 9.1E-11 70.5 5.7 96 11-111 192-325 (695)
190 1pui_A ENGB, probable GTP-bind 98.1 3.2E-06 1.1E-10 59.2 5.4 95 9-110 95-198 (210)
191 2x2e_A Dynamin-1; nitration, h 98.1 1.4E-07 4.7E-12 72.1 -1.9 97 8-108 155-255 (353)
192 2rdo_7 EF-G, elongation factor 98.1 1.6E-05 5.3E-10 66.1 9.9 54 7-65 93-147 (704)
193 1yrb_A ATP(GTP)binding protein 98.1 1.1E-05 3.9E-10 58.4 8.1 27 85-111 231-257 (262)
194 2qag_C Septin-7; cell cycle, c 98.1 5.7E-07 1.9E-11 70.4 0.8 89 16-110 133-226 (418)
195 3mca_A HBS1, elongation factor 98.1 5.6E-07 1.9E-11 73.3 0.6 88 7-99 266-371 (592)
196 1t9h_A YLOQ, probable GTPase E 98.0 2.2E-06 7.4E-11 64.6 3.1 89 10-103 77-169 (307)
197 2rcn_A Probable GTPase ENGC; Y 98.0 1.8E-05 6.2E-10 60.7 8.2 82 17-105 128-213 (358)
198 2xex_A Elongation factor G; GT 98.0 3.8E-05 1.3E-09 63.7 10.3 54 7-65 86-140 (693)
199 3t34_A Dynamin-related protein 97.9 2.6E-06 8.8E-11 65.1 1.6 95 10-108 163-258 (360)
200 1jwy_B Dynamin A GTPase domain 97.9 1.3E-05 4.6E-10 59.7 4.9 98 9-111 157-262 (315)
201 2p67_A LAO/AO transport system 97.7 8.5E-05 2.9E-09 56.4 6.9 83 19-110 168-260 (341)
202 3cnl_A YLQF, putative uncharac 97.7 2.4E-05 8.4E-10 57.4 3.4 78 15-107 17-97 (262)
203 2www_A Methylmalonic aciduria 97.6 0.00029 9.9E-09 53.7 8.9 83 19-111 186-279 (349)
204 3zvr_A Dynamin-1; hydrolase, D 97.6 1.4E-05 4.7E-10 66.8 1.1 95 8-108 175-275 (772)
205 3vqt_A RF-3, peptide chain rel 97.5 0.00044 1.5E-08 55.8 9.0 28 85-112 269-296 (548)
206 3def_A T7I23.11 protein; chlor 97.2 0.0008 2.7E-08 49.0 6.0 46 20-65 116-164 (262)
207 1wxq_A GTP-binding protein; st 97.1 0.00012 4.1E-09 56.8 1.2 46 52-103 214-262 (397)
208 2qm8_A GTPase/ATPase; G protei 97.1 0.001 3.5E-08 50.4 6.2 26 85-110 235-260 (337)
209 1h65_A Chloroplast outer envel 97.0 0.0012 4E-08 48.2 5.8 46 20-65 119-167 (270)
210 3j25_A Tetracycline resistance 96.8 0.0017 6E-08 53.2 5.8 28 85-112 213-240 (638)
211 1n0u_A EF-2, elongation factor 96.8 0.0016 5.6E-08 55.0 5.6 55 6-65 108-163 (842)
212 4fn5_A EF-G 1, elongation fact 96.5 0.016 5.4E-07 48.1 9.6 28 85-112 265-292 (709)
213 2qpt_A EH domain-containing pr 96.1 0.0026 9E-08 51.3 2.5 53 9-65 178-231 (550)
214 1jal_A YCHF protein; nucleotid 95.3 0.18 6.3E-06 38.5 9.9 42 52-94 199-240 (363)
215 2dby_A GTP-binding protein; GD 91.6 0.068 2.3E-06 41.0 1.7 52 52-103 201-254 (368)
216 2j37_W Signal recognition part 85.3 0.57 1.9E-05 37.4 3.1 76 21-108 214-310 (504)
217 3dm5_A SRP54, signal recogniti 79.6 4.5 0.00015 31.7 6.2 66 22-99 214-279 (443)
218 4a9a_A Ribosome-interacting GT 77.7 21 0.00072 27.2 9.8 64 21-85 150-222 (376)
219 3cwq_A Para family chromosome 73.7 18 0.00063 24.6 8.3 64 20-88 90-153 (209)
220 4dzz_A Plasmid partitioning pr 72.2 10 0.00036 25.2 5.9 64 20-88 97-162 (206)
221 3end_A Light-independent proto 71.4 26 0.00088 25.2 9.7 62 19-88 178-241 (307)
222 1wcv_1 SOJ, segregation protei 70.6 19 0.00065 25.2 7.2 46 20-65 133-182 (257)
223 4a9a_A Ribosome-interacting GT 67.0 12 0.00041 28.6 5.7 51 51-109 248-298 (376)
224 3kl4_A SRP54, signal recogniti 66.0 11 0.00039 29.3 5.4 65 22-98 213-277 (433)
225 1ko7_A HPR kinase/phosphatase; 63.9 7.7 0.00026 28.9 4.0 56 45-108 73-128 (314)
226 2qag_B Septin-6, protein NEDD5 63.5 10 0.00035 29.5 4.8 15 51-65 175-189 (427)
227 3ea0_A ATPase, para family; al 60.5 37 0.0013 23.2 10.2 65 20-90 140-204 (245)
228 1tq4_A IIGP1, interferon-induc 59.0 21 0.00073 27.5 5.8 61 52-112 175-254 (413)
229 1ni3_A YCHF GTPase, YCHF GTP-b 57.6 15 0.00051 28.2 4.7 43 52-94 224-269 (392)
230 1j8m_F SRP54, signal recogniti 57.1 23 0.00077 25.9 5.5 42 53-101 239-281 (297)
231 3k9g_A PF-32 protein; ssgcid, 48.9 38 0.0013 23.6 5.5 43 20-63 166-208 (267)
232 2v3c_C SRP54, signal recogniti 46.9 61 0.0021 25.0 6.7 32 55-91 241-272 (432)
233 3bfv_A CAPA1, CAPB2, membrane 45.6 29 0.001 24.8 4.5 43 20-65 214-257 (271)
234 2ph1_A Nucleotide-binding prot 44.6 43 0.0015 23.5 5.2 66 21-89 153-224 (262)
235 2oze_A ORF delta'; para, walke 40.4 64 0.0022 22.9 5.6 45 21-65 177-225 (298)
236 3kjh_A CO dehydrogenase/acetyl 38.9 74 0.0025 21.5 5.7 42 20-63 153-194 (254)
237 2ale_A SNU13, NHP2/L7AE family 37.0 27 0.00093 22.5 2.8 77 19-112 47-124 (134)
238 3sop_A Neuronal-specific septi 36.9 63 0.0021 23.1 5.1 13 53-65 141-153 (270)
239 3q9l_A Septum site-determining 36.3 48 0.0016 22.8 4.3 45 20-64 135-185 (260)
240 3do6_A Formate--tetrahydrofola 35.6 68 0.0023 25.7 5.2 55 52-109 360-416 (543)
241 1byi_A Dethiobiotin synthase; 33.3 1.1E+02 0.0037 20.4 8.9 38 24-64 141-179 (224)
242 3v7e_A Ribosome-associated pro 32.7 23 0.00078 20.6 1.8 13 52-64 53-65 (82)
243 1g3q_A MIND ATPase, cell divis 31.6 1.2E+02 0.004 20.4 7.4 44 20-65 133-176 (237)
244 1cp2_A CP2, nitrogenase iron p 31.3 1.3E+02 0.0044 20.7 9.6 64 20-88 140-205 (269)
245 1hyq_A MIND, cell division inh 30.5 1.3E+02 0.0045 20.6 7.8 62 20-88 132-193 (263)
246 3cio_A ETK, tyrosine-protein k 26.7 68 0.0023 23.2 3.8 42 20-64 236-278 (299)
247 3szr_A Interferon-induced GTP- 26.6 28 0.00097 28.2 1.9 53 10-65 174-227 (608)
248 1srv_A Protein (groel (HSP60 c 26.0 97 0.0033 20.3 4.0 51 10-63 6-64 (145)
249 2xzm_U Ribosomal protein L7AE 25.2 71 0.0024 20.2 3.2 13 52-64 67-79 (126)
250 3on1_A BH2414 protein; structu 24.9 42 0.0014 20.1 2.1 40 19-64 33-72 (101)
251 3la6_A Tyrosine-protein kinase 24.7 1.2E+02 0.0042 21.7 4.9 47 17-65 221-267 (286)
252 3v7q_A Probable ribosomal prot 24.6 42 0.0014 20.2 2.0 39 20-64 35-73 (101)
253 3guv_A Site-specific recombina 23.9 59 0.002 21.1 2.8 51 37-90 61-111 (167)
254 3e70_C DPA, signal recognition 23.5 1.4E+02 0.0047 22.0 5.0 39 56-101 272-310 (328)
255 2l82_A Designed protein OR32; 23.4 1.4E+02 0.0049 18.6 6.1 83 9-110 68-150 (162)
256 3tnt_A SARS coronavirus main p 22.6 57 0.002 24.0 2.6 44 68-111 222-274 (306)
257 2aif_A Ribosomal protein L7A; 22.3 52 0.0018 21.1 2.2 14 51-64 83-96 (135)
258 3iz5_f 60S ribosomal protein L 21.7 58 0.002 20.1 2.3 14 51-64 67-81 (112)
259 2yvt_A Hypothetical protein AQ 21.0 1.6E+02 0.0053 20.1 4.7 13 20-32 32-44 (260)
260 1qdp_A Robustoxin; neurotoxin, 20.2 43 0.0015 16.8 1.1 10 139-148 8-17 (42)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=5e-27 Score=169.58 Aligned_cols=107 Identities=30% Similarity=0.479 Sum_probs=95.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|-|+|+++++.||+++++ +++|||+++ .||+.+..|+..+....++++|+++||||+|+. ..+.+..+++..+++.+
T Consensus 71 Gqe~~~~l~~~~~~~a~~-~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~-~~r~V~~~e~~~~a~~~ 148 (216)
T 4dkx_A 71 GLERFRSLIPSYIRDSAA-AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKEL 148 (216)
T ss_dssp CTTTCGGGHHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHH
T ss_pred CchhhhhHHHHHhccccE-EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH-hcCcccHHHHhhHHHHh
Confidence 568999999999998877 788999998 999999999999988777889999999999997 67888999999999999
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.||+++|..|++.+....
T Consensus 149 ~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 149 NVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred CCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999887543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=2.4e-20 Score=132.32 Aligned_cols=107 Identities=31% Similarity=0.497 Sum_probs=93.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 66 G~~~~~~~~~~~~~~~d~-vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 143 (206)
T 2bcg_Y 66 GQERFRTITSSYYRGSHG-IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADAN 143 (206)
T ss_dssp TTTTTTCCCGGGGTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhccCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHc
Confidence 457789999999988765 788889987 899999999999988766789999999999997 55667777888888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.|++++|.+|++.+.+..
T Consensus 144 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 144 KMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987764
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=128.11 Aligned_cols=107 Identities=29% Similarity=0.494 Sum_probs=91.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+.+.+. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. ..+.+...++..++..
T Consensus 71 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 148 (206)
T 2bov_A 71 GQEDYAAIRDNYFRSGEG-FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQ 148 (206)
T ss_dssp CTTCCHHHHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHhhCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-ccccccHHHHHHHHHH
Confidence 456788899999988766 788889997 899999999999987653 579999999999997 5556777788888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.+.+++++||++|.|++++|++|++.+.+..
T Consensus 149 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 149 WNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 8999999999999999999999999987653
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=1.1e-19 Score=128.54 Aligned_cols=135 Identities=27% Similarity=0.394 Sum_probs=91.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCcCCCCCCHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQAL 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 79 (149)
|.++|..++..++++++. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. .+.+....+..+
T Consensus 66 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~ 142 (207)
T 1vg8_A 66 GQERFQSLGVAFYRGADC-CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAW 142 (207)
T ss_dssp SSGGGSCSCCGGGTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHH
T ss_pred CcHHHHHhHHHHHhCCcE-EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHH
Confidence 457888999999988766 788889987 899999999999876542 468999999999997 344556667777
Q ss_pred HH-HhCCcEEEecCCCCCCHHHHHHHHHHHHHHHhcCC-CCCCCCCcccccCCCCCCCCCCCCCCCCccC
Q 032001 80 AD-EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT-DSRSEPSTIKINQPDQAGGVGQAAQKSACCG 147 (149)
Q Consensus 80 ~~-~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc~ 147 (149)
+. ..+.+++++||++|.|++++|++|++.+.+..... .....+.++++++... +.+++++|||
T Consensus 143 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~c~c 207 (207)
T 1vg8_A 143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNER-----AKASAESCSC 207 (207)
T ss_dssp HHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC----------------------
T ss_pred HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhccccccccCCCccccCCcccc-----cccCCCCCCC
Confidence 76 56789999999999999999999999887654322 1111234455553221 2355567766
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9.4e-19 Score=125.84 Aligned_cols=107 Identities=28% Similarity=0.456 Sum_probs=89.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++++. +|+|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 71 G~~~~~~~~~~~~~~~d~-vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 148 (223)
T 3cpj_B 71 GQERYRAITSAYYRGAVG-ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQEN 148 (223)
T ss_dssp TTTTTTCCCGGGTTTCCE-EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CccchhhhHHHHhccCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 457899999999988766 788889987 899999999999987765689999999999997 55566777788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.||+++|++|++.+.+..
T Consensus 149 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 149 QLLFTETSALNSENVDKAFEELINTIYQKV 178 (223)
T ss_dssp TCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887654
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=3.9e-18 Score=118.47 Aligned_cols=108 Identities=46% Similarity=0.757 Sum_probs=82.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 66 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 143 (183)
T 2fu5_C 66 GQERFRTITTAYYRGAMG-IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-DKRQVSKERGEKLALDY 143 (183)
T ss_dssp --------CCTTTTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHH
T ss_pred CChhhhhhHHHHHhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-ccCcCCHHHHHHHHHHc
Confidence 456788999999988766 788889987 899999999999988765689999999999997 55667777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|.+|++.+.+...
T Consensus 144 ~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 144 GIKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp TCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999877654
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=116.93 Aligned_cols=108 Identities=36% Similarity=0.611 Sum_probs=94.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 74 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 151 (196)
T 3tkl_A 74 GQERFRTITSSYYRGAHG-IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSL 151 (196)
T ss_dssp CSGGGCTTHHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHT
T ss_pred CcHhhhhhHHHHHhhCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 457889999999988766 788889987 899999999999988776789999999999997 66677778888899999
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+.+++++||++|.|++++|.+|++.+.+...
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987644
No 8
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=4.2e-18 Score=119.45 Aligned_cols=108 Identities=33% Similarity=0.548 Sum_probs=93.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++++++. +++|||+++ .+|+.+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 81 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 158 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMG-FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-EERVVPTEKGQLLAEQL 158 (191)
T ss_dssp HHHHCHHHHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHc
Confidence 346788889999988766 788889997 899999999999988766789999999999997 55667778888889999
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|++|++.+.+...
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999877643
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=1.5e-17 Score=116.64 Aligned_cols=108 Identities=33% Similarity=0.572 Sum_probs=93.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 79 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 156 (191)
T 2a5j_A 79 GQESFRSITRSYYRGAAG-ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREH 156 (191)
T ss_dssp TGGGTSCCCHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHH
T ss_pred CchhhhhhHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-CccccCHHHHHHHHHHc
Confidence 457889999999988766 788889987 899999999999988766789999999999997 55567777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|++|++.+.+...
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 157 GLIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887653
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=7.9e-18 Score=119.31 Aligned_cols=107 Identities=30% Similarity=0.483 Sum_probs=93.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..|+++++. +++|||+++ .+|+.+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 87 G~~~~~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~ 164 (201)
T 2hup_A 87 GQERFRTITQSYYRSANG-AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-ELREVSLAEAQSLAEHY 164 (201)
T ss_dssp TCGGGHHHHHHHHTTCSE-EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHT
T ss_pred CcHhHHHHHHHHHhhCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-cccccCHHHHHHHHHHc
Confidence 457888999999988766 788889997 899999999999988766789999999999997 55567777888888888
Q ss_pred CC-cEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GI-KFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~-~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
++ +++++||++|.||+++|++|++.+.+..
T Consensus 165 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 165 DILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 98 9999999999999999999999887653
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=2.2e-17 Score=115.52 Aligned_cols=107 Identities=34% Similarity=0.566 Sum_probs=92.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..++.+++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+.......++...
T Consensus 80 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 157 (189)
T 2gf9_A 80 GQERYRTITTAYYRGAMG-FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-DERVVPAEDGRRLADDL 157 (189)
T ss_dssp SCCSSCCSGGGGGTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHH
T ss_pred CcHHHhhhHHHhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccCCCHHHHHHHHHHc
Confidence 457889999999988766 788889987 899999999999988765689999999999997 55566677788888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.|++++|++|++.+.+..
T Consensus 158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 158 GFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987764
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=1.2e-17 Score=114.09 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=78.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
+.++|+.++..|+++.+. +++|||+++ .+|+.+..|+..+.... ..++|+++|+||+|+. +.+.+.......++..
T Consensus 58 g~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~ 135 (166)
T 3q72_A 58 EQDGGRWLPGHCMAMGDA-YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVV 135 (166)
T ss_dssp ---------------CCE-EEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-SSCCSCHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-cccccCHHHHHHHHHH
Confidence 457788999999988766 788889997 89999999999987743 3679999999999997 6677778888888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+++++||++|.|++++|++|++.+.+.
T Consensus 136 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 136 FDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred hCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988654
No 13
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-17 Score=118.57 Aligned_cols=107 Identities=31% Similarity=0.469 Sum_probs=92.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 84 G~~~~~~~~~~~~~~~d~-~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~ 161 (201)
T 2ew1_A 84 GQERFRSITQSYYRSANA-LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQ 161 (201)
T ss_dssp CSGGGHHHHGGGSTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHc
Confidence 457888889999888765 788889987 899999999999988766789999999999997 55667777788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.|++++|.+|++.+.+..
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887764
No 14
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.75 E-value=3.9e-17 Score=113.52 Aligned_cols=107 Identities=34% Similarity=0.547 Sum_probs=89.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+.+.+. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. .+.+....+..++..
T Consensus 61 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~ 137 (189)
T 4dsu_A 61 GQEEYSAMRDQYMRTGEG-FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARS 137 (189)
T ss_dssp CC---CTTHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHH
Confidence 457889999999998766 788889987 89999999999998754 3679999999999997 355667778888899
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
.+.+++++||++|.|++++|++|++.+.+...
T Consensus 138 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 138 YGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999876643
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=3.7e-17 Score=112.81 Aligned_cols=108 Identities=28% Similarity=0.425 Sum_probs=91.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHH-hcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+.+.+. +++|||+++ .+|..+..|+.++.. ....++|+++|+||+|+. ..+.+....+..++..
T Consensus 66 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~ 143 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHG-FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGAS 143 (181)
T ss_dssp CTTTTSCCHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHhhCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHH
Confidence 456789999999988766 788889998 899999999999855 334678999999999997 5556777778888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
.+.+++++||++|.|++++|++|.+.+.+...
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999998876543
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=4.4e-17 Score=113.10 Aligned_cols=105 Identities=27% Similarity=0.403 Sum_probs=91.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+..|+..+... ...++|+++|+||+|+. ..+.+...++..++..
T Consensus 75 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~ 152 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDG-FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATK 152 (183)
T ss_dssp SCGGGCSSHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-hccCcCHHHHHHHHHH
Confidence 457899999999998766 788889997 8999999999998763 34678999999999997 5667788888899999
Q ss_pred hCCcEEEecCC-CCCCHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAK-TNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 83 ~~~~~~~~Sak-~~~~i~el~~~l~~~i~~ 111 (149)
.+.+++++||+ +|.|++++|++|++.+.+
T Consensus 153 ~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999 999999999999998754
No 17
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=115.95 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=87.2
Q ss_pred ccccc-cchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 7 LCFIG-VYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
++|.. ++..||++++. +++|||+++ .+|..+..|+.++..... .++|+++|+||+|+. ..+.+...++..++...
T Consensus 83 ~~~~~~~~~~~~~~~d~-~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~a~~~ 160 (195)
T 3cbq_A 83 GDAGGWLRDHCLQTGDA-FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTL 160 (195)
T ss_dssp SGGGHHHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-TTCCSCHHHHHHHHHHT
T ss_pred ccchhhhHHHhhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-ccCCcCHHHHHHHHHHh
Confidence 45554 77777776654 788999997 899999999999887553 579999999999997 55667777888888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+.+++++||++|.|++++|+.|++.+.+.
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988653
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=3.2e-17 Score=115.77 Aligned_cols=110 Identities=31% Similarity=0.531 Sum_probs=93.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|-++|+.++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 66 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 143 (203)
T 1zbd_A 66 GLERYRTITTAYYRGAMG-FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-DERVVSSERGRQLADHL 143 (203)
T ss_dssp CSGGGHHHHHTTGGGCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-TSCCSCHHHHHHHHHHH
T ss_pred CchhhcchHHHhhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-cccccCHHHHHHHHHHC
Confidence 446788889999988765 788889987 899999999999987665679999999999997 55667777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 116 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~~~ 116 (149)
+++++++||++|.|++++|++|++.+.+...+.
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 144 GFEFFEASAKDNINVKQTFERLVDVICEKMSES 176 (203)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999887765443
No 19
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=7.6e-18 Score=118.29 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=86.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALAD 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 81 (149)
|.++|..++..++.+++. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. . +.+....+..++.
T Consensus 65 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~-~-~~~~~~~~~~~~~ 141 (199)
T 2gf0_A 65 GSHQFPAMQRLSISKGHA-FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-Q-REVDTREAQAVAQ 141 (199)
T ss_dssp GGGSCHHHHHHHHHHCSE-EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS-S-CSSCHHHHHHHHH
T ss_pred ChHHhHHHHHHhhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC-c-cccCHHHHHHHHH
Confidence 456788889999888765 788889987 899999999888776432 468999999999997 3 5566677777888
Q ss_pred HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+.+++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 142 EWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999999999987643
No 20
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=119.88 Aligned_cols=102 Identities=27% Similarity=0.361 Sum_probs=83.5
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCc
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 86 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (149)
++.+++.|++.+ +++++|||+++ .+|+.+..|+..+.... ..++|+|+|+||+|+. ..+.+...+...++..++.+
T Consensus 101 ~~~l~~~~~~~a-~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~ 178 (211)
T 2g3y_A 101 NEWLHDHCMQVG-DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCK 178 (211)
T ss_dssp HHHHHHCCCCCC-SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCE
T ss_pred hhhHHHHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCE
Confidence 445666666554 55899999998 89999999998887632 2579999999999997 55667777777788888899
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 87 FFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 87 ~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
++++||++|.||+++|++|++.+...
T Consensus 179 ~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 179 FIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999988654
No 21
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=3.8e-17 Score=111.84 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=84.7
Q ss_pred ccccccc-cchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH
Q 032001 5 RCLCFIG-VYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD 81 (149)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 81 (149)
+.++|.. ++..+++++ +++++|||+++ .+|..+..|+.++..... .++|+++|+||+|+. ..+.+....+..++.
T Consensus 60 g~~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~ 137 (169)
T 3q85_A 60 EQGDAGGWLQDHCLQTG-DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAG 137 (169)
T ss_dssp CC--------CHHHHHC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHH
T ss_pred CccccchhhhhhhhccC-CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-hcccCCHHHHHHHHH
Confidence 3456665 666667665 45888999998 899999999999987654 479999999999997 567778888888999
Q ss_pred HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 82 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 82 ~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+.+++++||++|.|++++|+++++.+..+
T Consensus 138 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 138 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987653
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=6.9e-17 Score=111.42 Aligned_cols=107 Identities=31% Similarity=0.497 Sum_probs=92.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+.+++. +++|||+++ .++..+..|+..+.... .++|+++|+||+|+. ..+.+.......++...
T Consensus 67 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 143 (181)
T 3tw8_B 67 GQERFRTITSTYYRGTHG-VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDP-ERKVVETEDAYKFAGQM 143 (181)
T ss_dssp TGGGCSSCCGGGGTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHH
T ss_pred CchhhhhhHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCc-hhcccCHHHHHHHHHHc
Confidence 457889999999988866 788889987 89999999999987765 578999999999997 55667777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+.+++++||++|.|++++|++|.+.+.+...
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 144 GIQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998877654
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=4.8e-17 Score=112.36 Aligned_cols=106 Identities=36% Similarity=0.575 Sum_probs=84.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..|+++.+. +++|||+++ .++..+..|+..+......++|+++|+||+|+. ..+.+.......++...
T Consensus 69 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 146 (180)
T 2g6b_A 69 GQERFRSVTHAYYRDAHA-LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-HERVVKREDGEKLAKEY 146 (180)
T ss_dssp CC--------CCGGGCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-cccccCHHHHHHHHHHc
Confidence 456788899999988766 788889987 899999999999988765789999999999997 55666777788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+++++++||++|.|++++|++|.+.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 147 GLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988643
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=3.7e-17 Score=113.06 Aligned_cols=106 Identities=27% Similarity=0.484 Sum_probs=90.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|+.++..++++++. +++|||+++ .+|+.+..|+..+......++|+++|+||+|+. ..+.+...+...++...
T Consensus 70 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~ 147 (181)
T 2efe_B 70 GQERYHSLAPMYYRGAAA-AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-DARKVTAEDAQTYAQEN 147 (181)
T ss_dssp CSGGGGGGTHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHT
T ss_pred CChhhhhhhHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccccCCHHHHHHHHHHc
Confidence 457888999999988765 788889987 899999999999988766689999999999997 55666777888888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+++++++||++|.|++++|.+|++.+.+.
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877543
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.74 E-value=2.9e-17 Score=113.84 Aligned_cols=107 Identities=23% Similarity=0.277 Sum_probs=90.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++++. +++|||+++ .+|+.+..|+.++..... .++|+++|+||+|+. ..+.+...++..++..
T Consensus 63 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~ 140 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDING-YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAES 140 (181)
T ss_dssp CCCTTCCCCGGGTTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHH
T ss_pred CchhhhHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcceecHHHHHHHHHH
Confidence 456788899999888766 788889997 899999999999877543 578999999999997 6677888888899999
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.+.+++++||++|.|++++|.+|++.+.+..
T Consensus 141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 141 WNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred hCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999886653
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=3.9e-17 Score=115.52 Aligned_cols=108 Identities=31% Similarity=0.441 Sum_probs=92.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 83 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 160 (200)
T 2o52_A 83 GQERFRSVTRSYYRGAAG-ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQEN 160 (200)
T ss_dssp THHHHSCCCHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CcHhHHHHHHHHhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHc
Confidence 346788899999988766 788889987 899999999999987665789999999999997 55566677788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|.+|++.+.+...
T Consensus 161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 161 ELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887654
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.5e-17 Score=112.71 Aligned_cols=104 Identities=29% Similarity=0.483 Sum_probs=90.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++++. +++|||+++ .+++.+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 73 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 150 (179)
T 1z0f_A 73 GQERFRAVTRSYYRGAAG-ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEEAKQFAEEN 150 (179)
T ss_dssp TGGGTCHHHHHHHHTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHT
T ss_pred CChHhhhhHHHHhccCCE-EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 456788899999988866 788889987 899999999999988766789999999999997 55566677888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
+++++++||++|.|++++|++|++.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 151 GLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999998774
No 28
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.74 E-value=3.5e-17 Score=113.76 Aligned_cols=109 Identities=31% Similarity=0.447 Sum_probs=93.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+.+++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 68 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 145 (186)
T 2bme_A 68 GQERFRSVTRSYYRGAAG-ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQEN 145 (186)
T ss_dssp CSGGGHHHHHTTSTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 456788888888888766 788889987 899999999999887666789999999999997 55667777788888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 115 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~~ 115 (149)
+++++++||++|.|++++|+++++.+.+...+
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999876543
No 29
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.74 E-value=7.1e-17 Score=110.29 Aligned_cols=105 Identities=35% Similarity=0.635 Sum_probs=90.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++++++. +++|||+++ .++..+..|+..+......++|+++|+||+|+. .+.+.......+++..
T Consensus 61 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~ 137 (170)
T 1g16_A 61 GQERFRTITTAYYRGAMG-IILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKEL 137 (170)
T ss_dssp TGGGTSCCCHHHHTTEEE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHH
T ss_pred CChhhhhhHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHc
Confidence 457788999999988755 788889987 899999999999988766689999999999995 3456677778888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+++++++||++|.|++++|.+|.+.+.+.
T Consensus 138 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 138 GIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 30
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=6.6e-17 Score=113.30 Aligned_cols=108 Identities=24% Similarity=0.470 Sum_probs=92.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|-++|..++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 83 G~~~~~~~~~~~~~~~d~-vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 160 (193)
T 2oil_A 83 GLERYRAITSAYYRGAVG-ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-QAREVPTEEARMFAENN 160 (193)
T ss_dssp CCCTTCTTHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CchhhhhhhHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHc
Confidence 446788999999988766 788889987 899999999999987655689999999999997 54566677788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|.+|++.+.+...
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876643
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=2.8e-17 Score=112.20 Aligned_cols=103 Identities=34% Similarity=0.564 Sum_probs=88.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++.+++. +++|||+++ .++..+..|+..+......++|+++|+||+|+. ..+.+...++..++...
T Consensus 64 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 141 (170)
T 1r2q_A 64 GQERYHSLAPMYYRGAQA-AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-NKRAVDFQEAQSYADDN 141 (170)
T ss_dssp CSGGGGGGHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CcHHhhhhhHHhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccccCHHHHHHHHHHc
Confidence 456788899998888765 788889987 899999999999988766789999999999997 44566677778888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+.+++++||++|.|++++|++|++.+
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 32
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.73 E-value=1.2e-16 Score=112.58 Aligned_cols=103 Identities=27% Similarity=0.357 Sum_probs=84.4
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCc
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 86 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (149)
++.+++.|++.+++ +++|||+++ .+|+.+..|+..+.... ..++|+++|+||+|+. ..+.+.......++..++.+
T Consensus 70 ~~~~~~~~~~~~~~-~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~ 147 (192)
T 2cjw_A 70 NEWLHDHCMQVGDA-YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXK 147 (192)
T ss_dssp -CTTGGGHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCE
T ss_pred hhhHHHhhcccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCc
Confidence 56677777776654 899999998 89999999998887643 3578999999999997 45566666777777788889
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 87 FFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 87 ~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
++++||++|.||+++|.++++.+....
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999886543
No 33
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.73 E-value=1.2e-17 Score=118.89 Aligned_cols=105 Identities=23% Similarity=0.367 Sum_probs=85.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--------CCHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA--------VPTS 74 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--------~~~~ 74 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+. .|+..+.... +++|+++|+||+|+. .... +...
T Consensus 66 G~~~~~~~~~~~~~~~d~-~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~v~~~ 142 (212)
T 2j0v_A 66 GQEDYSRLRPLSYRGADI-FVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR-DDKGYLADHTNVITST 142 (212)
T ss_dssp CCCCCCC--CGGGTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHH-TCHHHHHTCSSCCCHH
T ss_pred CcHHHHHHHHhhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhh-hCccccccccCCCCHH
Confidence 447899999999988866 788889987 8999986 8999988765 478999999999986 3222 3566
Q ss_pred HHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 75 KGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 75 ~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
++..++...+. +++++||++|.|++++|++|++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 143 QGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 77778888885 999999999999999999999988654
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=2.7e-17 Score=112.52 Aligned_cols=105 Identities=24% Similarity=0.480 Sum_probs=83.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++++++. +++|||+++ .++..+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 64 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 141 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNG-AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAESYAESV 141 (170)
T ss_dssp CC-------CCSSTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CcHhhhhhHHHHhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 456788888888888765 788889987 899999999999877655679999999999997 55566777888888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 142 GAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999988753
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.73 E-value=3.1e-17 Score=117.42 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=91.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHH-HHHHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSD-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~-~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|.++|..++..|+++++. +++|||+++ .+|.. +..|+..+.... .++|+++|+||+|+..+ .+.+
T Consensus 84 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 161 (214)
T 3q3j_B 84 GSPYYDNVRPLCYSDSDA-VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI 161 (214)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC
T ss_pred CCHhHHHHHHHHcCCCeE-EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCcc
Confidence 567899999999998766 788899998 89998 689999998765 57999999999999721 2567
Q ss_pred CHHHHHHHHHHhCC-cEEEecCCCCCC-HHHHHHHHHHHHHHHh
Q 032001 72 PTSKGQALADEYGI-KFFETSAKTNLN-VEQVFFSIARDIKQRL 113 (149)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~Sak~~~~-i~el~~~l~~~i~~~~ 113 (149)
...++..++...+. +++++||++|.| |+++|+.|++.+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 162 SYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 78888899999998 999999999998 9999999999887553
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.2e-17 Score=110.89 Aligned_cols=103 Identities=29% Similarity=0.330 Sum_probs=83.4
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCc
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 86 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (149)
+..++..|++.. +++++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. ..+.+...+...++...+.+
T Consensus 67 ~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~ 144 (175)
T 2nzj_A 67 KSWSQESCLQGG-SAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCK 144 (175)
T ss_dssp -CHHHHHTTTSC-SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHHTSE
T ss_pred hhhhHHhhcccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-cccccCHHHHHHHHHHcCCe
Confidence 556666676665 45788999997 89999999999887743 2578999999999997 55667777777888888999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 87 FFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 87 ~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
++++||++|.|++++|++|++.+.+..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887654
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=114.09 Aligned_cols=105 Identities=30% Similarity=0.558 Sum_probs=89.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...++..+++..
T Consensus 84 G~~~~~~~~~~~~~~~d~-iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~ 161 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKG-IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQI 161 (192)
T ss_dssp CSGGGHHHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHhc
Confidence 456788889999988766 788889987 899999999999887766789999999999997 55566677777777764
Q ss_pred -CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 84 -GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 84 -~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+++++||++|.|++++|++|++.+.+
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999998865
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.2e-16 Score=109.10 Aligned_cols=103 Identities=30% Similarity=0.505 Sum_probs=89.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|-++|..++..++++.+. +++|||+++ .++..+..|+..+.....+.+|+++|+||+|+. ..+.+.......++...
T Consensus 64 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 141 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAA-AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSI 141 (170)
T ss_dssp CSGGGGGGTHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHT
T ss_pred CchhhhcccHhhCcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-cccccCHHHHHHHHHHc
Confidence 347788999999888865 788889987 899999999999988766789999999999997 55566777788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+.+++++||++|.|++++|++|.+.+
T Consensus 142 ~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 39
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=115.08 Aligned_cols=107 Identities=24% Similarity=0.364 Sum_probs=90.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. ..+.+....+..++..
T Consensus 81 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~ 158 (201)
T 3oes_A 81 GQDEYSILPYSFIIGVHG-YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAES 158 (201)
T ss_dssp CCCTTCCCCGGGTTTCCE-EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-GGCCSCHHHHHHHHHH
T ss_pred CccchHHHHHHHHhcCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-cccccCHHHHHHHHHH
Confidence 457889999999998766 788889997 89999999999987753 2578999999999997 5667777888889999
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.+.+++++||++|.|++++|++|++.+.+..
T Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 159 WGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999887653
No 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=5.1e-17 Score=113.60 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=88.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCC------h-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIA------S-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 77 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~------~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~ 77 (149)
|.++|+.+++.|+++++. +++|||++ + .+|..+..|+.++.. ...++|+++|+||+|+. ..+...++.
T Consensus 83 G~~~~~~~~~~~~~~~d~-~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~---~~~~~~~~~ 157 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDG-IVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLP---DALPVEMVR 157 (198)
T ss_dssp SCCSCSHHHHHHTTTCCE-EEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTST---TCCCHHHHH
T ss_pred ChHHHHHHHHHHHhcCCE-EEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcc---cccCHHHHH
Confidence 457899999999998866 78888998 5 788888889888743 23679999999999997 346677888
Q ss_pred HHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 78 ALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 78 ~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
.++...+. +++++||++|.|++++|++|++.+.+...
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 88888888 99999999999999999999999987654
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5e-17 Score=114.12 Aligned_cols=105 Identities=28% Similarity=0.509 Sum_probs=90.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+..+++..+++..
T Consensus 81 G~~~~~~~~~~~~~~~d~-iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~v~~~~~~~~~~~~ 158 (192)
T 2fg5_A 81 GQERFHSLAPMYYRGSAA-AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-DIREVPLKDAKEYAESI 158 (192)
T ss_dssp CSGGGGGGTHHHHTTCSE-EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTT
T ss_pred CchhhHhhhHHhhccCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 457889999999988765 788889987 899999999999988766689999999999997 54566777888888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+++++||++|.|++++|++|.+.+.+
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 159 GAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987643
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=7.7e-17 Score=109.68 Aligned_cols=105 Identities=30% Similarity=0.501 Sum_probs=87.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. ..+.+...++..++..
T Consensus 61 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 138 (168)
T 1u8z_A 61 GQEDYAAIRDNYFRSGEG-FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQ 138 (168)
T ss_dssp C---CHHHHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHH
T ss_pred CcchhHHHHHHHhhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHH
Confidence 446788899999988766 788889987 899999999999887553 579999999999997 5556677788888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+.+++++||++|.|++++|++|++.+.+
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 139 WNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999988753
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=7.4e-17 Score=111.25 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=87.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCcCCCCCCHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALA 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 80 (149)
|.++|..++..|+++++. +++|||+++ .+|+.+..|+..+..... ...|+++|+||+|+. ..+.+..+.+..++
T Consensus 65 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~ 142 (178)
T 2hxs_A 65 GQTIGGKMLDKYIYGAQG-VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFC 142 (178)
T ss_dssp TCCTTCTTHHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-GGCSSCHHHHHHHH
T ss_pred CCccccchhhHHHhhCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-cccccCHHHHHHHH
Confidence 457889999999988766 788889987 899999999999876431 233489999999997 54566677788888
Q ss_pred HHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 81 DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 81 ~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
...+++++++||++|.|++++|++|++.+.+.
T Consensus 143 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 143 QENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999987543
No 44
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=1.2e-16 Score=112.09 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=89.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCcC-CCCCCHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALAD 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~-~~~~~~i~~~~~~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~ 81 (149)
|.++|..++..|+++++. +++|||+++ .+|..+ ..|+..+.... .++|+++|+||+|+... .+.+....+..++.
T Consensus 80 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (194)
T 3reg_A 80 GQEEYDRLRPLSYADSDV-VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ 157 (194)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH
T ss_pred CcHHHHHHhHhhccCCcE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHH
Confidence 457899999999998766 788889997 899997 78988887654 57999999999999721 35677788888999
Q ss_pred HhCCc-EEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 82 EYGIK-FFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 82 ~~~~~-~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+.. ++++||++|.|++++|++|++.+.+.
T Consensus 158 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 158 KLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred hcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 99987 99999999999999999999988654
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=5.4e-17 Score=110.76 Aligned_cols=103 Identities=35% Similarity=0.566 Sum_probs=88.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCC---CCCCHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALA 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~---~~~~~~~~~~~~ 80 (149)
|.++|..++..++++++. +++|||+++ .++..+..|+..+......++|+++|+||+|+. .. +.+.......++
T Consensus 61 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~v~~~~~~~~~ 138 (170)
T 1ek0_A 61 GQERFASLAPXYYRNAQA-ALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL-QEGGERKVAREEGEKLA 138 (170)
T ss_dssp CSGGGGGGHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GSSCCCCSCHHHHHHHH
T ss_pred CChhhhhhhhhhhccCcE-EEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-ccccccCCCHHHHHHHH
Confidence 456788999999988766 788889987 899999999999988766789999999999987 33 556677778888
Q ss_pred HHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 81 DEYGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 81 ~~~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
...+.+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 139 EEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999998754
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=1.3e-16 Score=111.12 Aligned_cols=108 Identities=29% Similarity=0.504 Sum_probs=91.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|-++|..++..++++++. +++|||+++ .++..+..|+..+..... .++|+++|+||+|+. ..+.+....+..++..
T Consensus 79 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 156 (195)
T 3bc1_A 79 GLERFRSLTTAFFRDAMG-FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-DQRAVKEEEARELAEK 156 (195)
T ss_dssp CSGGGHHHHHHTTTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-GGCCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHH
Confidence 346788888888888765 788889987 899999999999887654 678999999999997 5456667778888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
.+++++++||++|.|++++|.+|.+.+.+...
T Consensus 157 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 157 YGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999998877654
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=1.8e-16 Score=107.98 Aligned_cols=103 Identities=29% Similarity=0.506 Sum_probs=87.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. ..+.+.......+++.
T Consensus 60 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 137 (167)
T 1c1y_A 60 GTEQFTAMRDLYMKNGQG-FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQ 137 (167)
T ss_dssp SSCSSTTHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHH
Confidence 456788999999988766 788889987 89999999999987753 3679999999999997 5566667777888888
Q ss_pred h-CCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 83 Y-GIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 83 ~-~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
. +.+++++||++|.|++++|++|++.+
T Consensus 138 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 7 78999999999999999999999876
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=1.5e-16 Score=110.20 Aligned_cols=107 Identities=29% Similarity=0.494 Sum_probs=91.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. ..+.+...++..++..
T Consensus 75 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 152 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEG-FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQ 152 (187)
T ss_dssp CTTCCHHHHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHH
T ss_pred CCcccHHHHHHHhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHH
Confidence 446788899999988766 788889987 899999999999887553 478999999999997 5456677788888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.+.+++++||++|.|++++|++|++.+.+..
T Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 153 WNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999887653
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=5e-16 Score=110.14 Aligned_cols=107 Identities=34% Similarity=0.628 Sum_probs=91.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+.+++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. .+.+.......++...
T Consensus 78 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~ 154 (213)
T 3cph_A 78 GQERFRTITTAYYRGAMG-IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKEL 154 (213)
T ss_dssp TGGGGTCCCHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHc
Confidence 457888999999988766 788889987 889999999999988765679999999999995 3555667777888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
+++++++||++|.|++++|.+|.+.+.+...
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 185 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887654
No 50
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=2.9e-16 Score=110.63 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=89.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|.++|+.++..|+.+++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+... .+.+
T Consensus 77 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v 154 (201)
T 2q3h_A 77 GQDEFDKLRPLCYTNTDI-FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPV 154 (201)
T ss_dssp CSTTCSSSGGGGGTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred CCHHHHHHhHhhcCCCcE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccC
Confidence 447899999999888765 788889987 8999986 8999988765 47999999999999721 2456
Q ss_pred CHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 72 PTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
....+..++...+. +++++||++|.|++++|++|++.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 155 PEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 67777888888886 8999999999999999999999887654
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=1.1e-16 Score=110.25 Aligned_cols=104 Identities=32% Similarity=0.511 Sum_probs=89.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+.+.+. +++|||+++ .+|..+..|+..+......++|+++|+||+|+. ..+.+...+...++...
T Consensus 72 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 149 (179)
T 2y8e_A 72 GQERFRSLIPSYIRDSTV-AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKEL 149 (179)
T ss_dssp CSGGGGGGSHHHHHTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhcCCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHc
Confidence 456788999999988766 788889987 899999999999887665689999999999997 55666677777888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
+.+++++||++|.|++++|++|.+.+.
T Consensus 150 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 150 NVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999987653
No 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=2e-16 Score=109.18 Aligned_cols=108 Identities=30% Similarity=0.380 Sum_probs=80.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCcCCCCCCHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQAL 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 79 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+.++..... .++|+++|+||+|+....+.+....+..+
T Consensus 67 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~ 145 (182)
T 1ky3_A 67 GQERFQSLGVAFYRGADC-CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQEL 145 (182)
T ss_dssp ----------CCSTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHH
T ss_pred CChHhhhhhHHHhhcCCE-EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHH
Confidence 456788889988888765 788889987 899999999999877543 57899999999999633445667777777
Q ss_pred HHH-hCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 80 ADE-YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 80 ~~~-~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+.. .+.+++++||++|.|++++|++|++.+.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 146 AKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 774 5679999999999999999999999887653
No 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=1.8e-16 Score=108.08 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=89.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..++.+++. +++|||+++ .+++.+..|+..+.... .+.|+++|+||+|+. ..+.+...++..++...
T Consensus 63 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 139 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQA-CVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRL 139 (168)
T ss_dssp TGGGTTCCCHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC-cccccCHHHHHHHHHHc
Confidence 456788999999988765 788889987 88999999999987765 578999999999997 44566677788888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+++++||++|.|++++|++|.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 140 KLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999987753
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.3e-16 Score=109.17 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=87.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+... .+.+
T Consensus 75 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 152 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDV-FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI 152 (194)
T ss_dssp CSSSSTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred CCcchhHHHHHhcCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCccc
Confidence 457899999999988766 788889987 8899987 8999988765 47899999999999721 1356
Q ss_pred CHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 72 PTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
...++..++...+. +++++||++|.|++++|++|++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 153 CVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 67778888888887 8999999999999999999998775
No 55
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=1.5e-16 Score=113.55 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=89.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|-++|..++..++.+++. +++|||+++ .++..+..|+..+......++|+++|+||+|+. ..+.+.......++...
T Consensus 70 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 147 (218)
T 4djt_A 70 GQEKKAVLKDVYYIGASG-AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-NRQKISKKLVMEVLKGK 147 (218)
T ss_dssp SGGGTSCCCHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTC
T ss_pred CchhhchHHHHHhhcCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHc
Confidence 456788899999888766 788889997 899999999999988766679999999999997 55566777777777788
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+.+++++||++|.|++++|.+|++.+.+..
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 899999999999999999999999887653
No 56
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=112.19 Aligned_cols=103 Identities=28% Similarity=0.404 Sum_probs=84.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALA 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~---~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 80 (149)
|.++|+.+ ..|++++ +++++|||+++ .+|..+..|+.++.... ..++|+++|+||+|+. ..+.+...++..++
T Consensus 78 G~~~~~~~-~~~~~~~-~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~ 154 (187)
T 3c5c_A 78 DLDTPRNC-ERYLNWA-HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-QYRQVTKAEGVALA 154 (187)
T ss_dssp C---CCCT-HHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-GGCSSCHHHHHHHH
T ss_pred CCCcchhH-HHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-hcCccCHHHHHHHH
Confidence 34567775 5677765 45799999997 89999999999987753 2578999999999997 55667778888899
Q ss_pred HHhCCcEEEecC-CCCCCHHHHHHHHHHHHH
Q 032001 81 DEYGIKFFETSA-KTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 81 ~~~~~~~~~~Sa-k~~~~i~el~~~l~~~i~ 110 (149)
...+++++++|| ++|.||+++|+.|++.+.
T Consensus 155 ~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 155 GRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 999999999999 899999999999998774
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=6.4e-17 Score=115.39 Aligned_cols=108 Identities=31% Similarity=0.520 Sum_probs=90.6
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
.++|+.++..|+++++. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. ..+.+....+..++...
T Consensus 94 ~~~~~~~~~~~~~~~d~-iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~ 171 (217)
T 2f7s_A 94 QERFRSLTTAFFRDAMG-FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKY 171 (217)
T ss_dssp HHHHHHHHHHHHTTCCE-EEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHT
T ss_pred cHhHHhHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-cccccCHHHHHHHHHHC
Confidence 45678888888888765 788889987 899999999988765443 578999999999997 55566777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 115 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~~ 115 (149)
+++++++||++|.|++++|++|++.+.+...+
T Consensus 172 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 172 GIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988776443
No 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=4e-16 Score=109.11 Aligned_cols=97 Identities=22% Similarity=0.389 Sum_probs=81.5
Q ss_pred hhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCc-CCCCCCHHHHHHHHHHhC-CcEEEec
Q 032001 16 YLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEYG-IKFFETS 91 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~S 91 (149)
|++++ +++++|||+++ .+|..+..|+.++..... .++|+++|+||+|+.+ ..+.+...++..++...+ .+++++|
T Consensus 82 ~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 FAAWV-DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp HHHHC-SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred eecCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 56665 45889999998 899999999999987643 5789999999999841 346677788888998887 8999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh
Q 032001 92 AKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 92 ak~~~~i~el~~~l~~~i~~~~ 113 (149)
|++|.||+++|++|++.+.+..
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887653
No 59
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=8.9e-17 Score=113.39 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=81.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCcC-CCCCCHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS---DNVNKVLVGNKADMDES-KRAVPTSKGQAL 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~---~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~ 79 (149)
|-++|..++..|+++++. +++|||+++ .+|+.+..|+..+..... .++|+++|+||+|+. . .+.+...++..+
T Consensus 82 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~~v~~~~~~~~ 159 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYY-AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP-PQRHQVRLDMAQDW 159 (208)
T ss_dssp TTHHHHHHHSTTCCCCCE-EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCcE-EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc-hhhccCCHHHHHHH
Confidence 345677888888887755 788889987 899999999999988765 589999999999997 4 456777888888
Q ss_pred HHHhCCcEEEecCCC-CCCHHHHHHHHHHHHHHHh
Q 032001 80 ADEYGIKFFETSAKT-NLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 80 ~~~~~~~~~~~Sak~-~~~i~el~~~l~~~i~~~~ 113 (149)
++..+.+++++||++ |.|++++|++|++.+.+..
T Consensus 160 ~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 160 ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999887654
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=112.51 Aligned_cols=105 Identities=33% Similarity=0.523 Sum_probs=86.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCc-----CCCCCCHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQA 78 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~-----~~~~~~~~~~~~ 78 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+..+......++|+++|+||+|+.. ..+.+....+..
T Consensus 86 G~~~~~~~~~~~~~~~d~-iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~ 164 (199)
T 2p5s_A 86 GQERFRSIAKSYFRKADG-VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK 164 (199)
T ss_dssp TCTTCHHHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH
T ss_pred CCcchhhhHHHHHhhCCE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH
Confidence 456788899999988766 788889987 8999999999998876656799999999999851 235566777788
Q ss_pred HHHHhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 79 LADEYGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 79 ~~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
++...+.+++++||++|.|++++|.+|++.+.
T Consensus 165 ~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 165 LAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 88888999999999999999999999998774
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=2.1e-16 Score=107.40 Aligned_cols=104 Identities=33% Similarity=0.490 Sum_probs=88.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+.+.+. +++|||+++ .++..+..|+..+..... .++|+++|+||+|+. ..+.+.......++..
T Consensus 60 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 137 (167)
T 1kao_A 60 GTEQFASMRDLYIKNGQG-FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEE 137 (167)
T ss_dssp CTTCCHHHHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHH
T ss_pred CchhhHHHHHHHhccCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-ccccCCHHHHHHHHHH
Confidence 446788889999888866 788889987 899999999999877543 579999999999997 5566677777888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+.+++++||++|.|++++|++|++.+.
T Consensus 138 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999999998774
No 62
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=6.7e-16 Score=107.84 Aligned_cols=105 Identities=27% Similarity=0.408 Sum_probs=89.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+++++. +++|||+++ .++..+..|+.++..... .++|+++|+||+|+. .+.+....+..++..
T Consensus 73 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~ 149 (195)
T 1x3s_A 73 GQERFRTLTPSYYRGAQG-VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARK 149 (195)
T ss_dssp SSGGGCCSHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHH
T ss_pred CchhhhhhhHHHhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHH
Confidence 456789999999988765 788889987 899999999999876542 578999999999996 345666777888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+++++||++|.|++++|++|.+.+.+.
T Consensus 150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 150 HSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999988754
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=2.9e-16 Score=109.71 Aligned_cols=104 Identities=31% Similarity=0.514 Sum_probs=85.4
Q ss_pred cccccc-ccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH
Q 032001 5 RCLCFI-GVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD 81 (149)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 81 (149)
|.++|+ .++..|+++++. +++|||+++ .+|..+..|+.++.... ..++|+++|+||+|+. ..+.+.......++.
T Consensus 78 G~~~~~~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~ 155 (189)
T 1z06_A 78 GQERFRKSMVQHYYRNVHA-VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFAD 155 (189)
T ss_dssp CSHHHHTTTHHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHH
T ss_pred CchhhhhhhhHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceeCHHHHHHHHH
Confidence 345677 788888887755 788889987 89999999999998765 4679999999999997 555667778888888
Q ss_pred HhCCcEEEecCCCC---CCHHHHHHHHHHHHH
Q 032001 82 EYGIKFFETSAKTN---LNVEQVFFSIARDIK 110 (149)
Q Consensus 82 ~~~~~~~~~Sak~~---~~i~el~~~l~~~i~ 110 (149)
..+++++++||++| .|++++|.+|++.+.
T Consensus 156 ~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 88999999999999 999999999988764
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.68 E-value=2e-15 Score=105.62 Aligned_cols=104 Identities=23% Similarity=0.393 Sum_probs=88.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..+++.++. +++|||+++ .++..+..|+..+.... ++|+++|+||+|+ ..+.+...++..++...
T Consensus 102 G~~~~~~~~~~~~~~~d~-~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D~--~~~~~~~~~~~~~~~~~ 176 (208)
T 3clv_A 102 GQERYASIVPLYYRGATC-AIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDK--NKFQVDILEVQKYAQDN 176 (208)
T ss_dssp TGGGCTTTHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTTC--C-CCSCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhcCCCE-EEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCCc--ccccCCHHHHHHHHHHc
Confidence 457788899999888765 788889987 88999999999988765 3899999999994 44566777888888889
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++++++||++|.|++++|++|++.+.+..
T Consensus 177 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 177 NLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887654
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=7.5e-16 Score=106.05 Aligned_cols=104 Identities=26% Similarity=0.364 Sum_probs=86.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC----CCCeEEEEeeCCCCCcCCCCCCHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQAL 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 79 (149)
|.++|+.++..|+++.+. +++|||+++ .++..+..|+..+..... .++|+++|+||+|+. .+.+....+..+
T Consensus 65 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~ 141 (177)
T 1wms_A 65 GQERFRSLRTPFYRGSDC-CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAW 141 (177)
T ss_dssp CCGGGHHHHGGGGTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHH
T ss_pred CchhhhhhHHHHHhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHH
Confidence 456788888888887765 788889987 899999999999877543 578999999999996 355666777777
Q ss_pred HH-HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 80 AD-EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 80 ~~-~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+. ..+.+++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 142 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 77 456899999999999999999999998864
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=1.7e-15 Score=102.56 Aligned_cols=104 Identities=35% Similarity=0.570 Sum_probs=87.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+...+. +++|||+++ .++..+..|+..+..... .++|+++|+||+|+. . +.+.......++..
T Consensus 60 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~-~-~~~~~~~~~~~~~~ 136 (166)
T 2ce2_X 60 GQEEYSAMRDQYMRTGEG-FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-A-RTVESRQAQDLARS 136 (166)
T ss_dssp CCSSCCHHHHHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS-C-CCSCHHHHHHHHHH
T ss_pred CchhhhHHHHHhhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh-h-cccCHHHHHHHHHH
Confidence 456788889989888766 788889987 899999999999877543 479999999999997 3 45667777888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+++++++||++|.|++++|.+|.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 137 YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987743
No 67
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.67 E-value=1.6e-15 Score=104.69 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=79.3
Q ss_pred hhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc---CCCCeEEEEeeCCCCCc-CCCCCCHHHHHHHHHHh-CCcE
Q 032001 14 PPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKF 87 (149)
Q Consensus 14 ~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~---~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~ 87 (149)
..|+++++. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+.. ..+.+...++..++... +.++
T Consensus 67 ~~~~~~~d~-~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (178)
T 2iwr_A 67 AKFSGWADA-VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSY 145 (178)
T ss_dssp HHHHHHCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE
T ss_pred hHHHHhCCE-EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeE
Confidence 456666655 788999997 89999999877665532 25789999999999941 34566777778888776 6899
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 88 FETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 88 ~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+++||++|.|++++|++|++.+.+..
T Consensus 146 ~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 146 YETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 68
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=4.6e-16 Score=108.37 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=86.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~-~~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|.++|..+++.|+++++. +++|||+++ .+|..+ ..|+..+.... +++|+++|+||+|+..+ .+.+
T Consensus 64 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 141 (184)
T 1m7b_A 64 GSPYYDNVRPLSYPDSDA-VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV 141 (184)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred CChhhhhhHHhhcCCCcE-EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCC
Confidence 457889999999888766 788889987 899998 78999887765 57899999999999621 1456
Q ss_pred CHHHHHHHHHHhC-CcEEEecCC-CCCCHHHHHHHHHHHHHH
Q 032001 72 PTSKGQALADEYG-IKFFETSAK-TNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~Sak-~~~~i~el~~~l~~~i~~ 111 (149)
..+++..+++..+ .+++++||+ ++.|++++|+.+++.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 142 SYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 6777888888877 699999999 689999999999987753
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.67 E-value=3.7e-16 Score=108.06 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=84.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC----------CC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA----------VP 72 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~----------~~ 72 (149)
|.++|+.++..++++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+. ..+. +.
T Consensus 65 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~v~ 141 (182)
T 3bwd_D 65 GQEDYNRLRPLSYRGADV-FILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR-DDKQFFIDHPGAVPIT 141 (182)
T ss_dssp C-CTTTTTGGGGGTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHH-TCHHHHHHC--CCCCC
T ss_pred CChhhhhhHHhhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhh-cCcccccccccCCCCC
Confidence 457899999999988766 788889987 8999987 7999988765 478999999999986 3222 35
Q ss_pred HHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 73 TSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 73 ~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
..++..++...+. +++++||++|.|++++|++|++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 142 TVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6677778888886 9999999999999999999998763
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.2e-15 Score=107.23 Aligned_cols=101 Identities=29% Similarity=0.427 Sum_probs=86.4
Q ss_pred cccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcE
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKF 87 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 87 (149)
..++..|+++++. +++|||+++ .+|+.+..|+..+.... ..++|+++|+||+|+. ..+.+...++..++...++++
T Consensus 89 ~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~ 166 (196)
T 2atv_A 89 TIQREGHMRWGEG-FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAF 166 (196)
T ss_dssp CHHHHHHHHHCSE-EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEE
T ss_pred ccchhhhhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeE
Confidence 5677888887755 788899987 89999999999987753 3679999999999997 556677778888888889999
Q ss_pred EEecCCCCC-CHHHHHHHHHHHHHHH
Q 032001 88 FETSAKTNL-NVEQVFFSIARDIKQR 112 (149)
Q Consensus 88 ~~~Sak~~~-~i~el~~~l~~~i~~~ 112 (149)
+++||++|. |++++|++|++.+.+.
T Consensus 167 ~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 167 YECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp EECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred EEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 999999999 9999999999988764
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.66 E-value=1.6e-15 Score=107.20 Aligned_cols=103 Identities=24% Similarity=0.327 Sum_probs=85.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCcCC------------CC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDI-RNWIRNIEQHASDNVNKVLVGNKADMDESK------------RA 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~-~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~------------~~ 70 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+ ..|+..+.... .++|+++|+||+|+. .. +.
T Consensus 82 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 158 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDV-ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLR-QDEHTRRELAKMKQEP 158 (201)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGT-TCHHHHHHHHTTTCCC
T ss_pred CchhHHHHHHHhcCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhh-cCccchhhhcccccCc
Confidence 457889999999888765 788889997 899998 68988887755 478999999999997 32 34
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
+...++..++...+. +++++||++|.|++++|++|++.+.
T Consensus 159 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 159 VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 566677788888887 8999999999999999999998764
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=2e-15 Score=105.31 Aligned_cols=105 Identities=35% Similarity=0.556 Sum_probs=80.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|..++..|+..++. +++|||+++ .++..+..|+..+..... .++|+++|+||+|+. . +.+....+..+++.
T Consensus 78 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~-~~~~~~~~~~~~~~ 154 (190)
T 3con_A 78 GQEEYSAMRDQYMRTGEG-FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-T-RTVDTKQAHELAKS 154 (190)
T ss_dssp C-----------CTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS-C-CCSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhCcCCE-EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC-c-ccCCHHHHHHHHHH
Confidence 346788888988887766 678889987 899999999999877543 578999999999997 3 55667778888888
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+++++++||++|.|++++|++|++.+.+.
T Consensus 155 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 155 YGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988664
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=6.6e-16 Score=110.34 Aligned_cols=105 Identities=22% Similarity=0.335 Sum_probs=76.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCC------------CC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESK------------RA 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~------------~~ 70 (149)
|.++|..++..|+.+++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+. .. +.
T Consensus 91 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 167 (214)
T 2j1l_A 91 GQDDYDRLRPLFYPDASV-LLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLR-KDKSLVNKLRRNGLEP 167 (214)
T ss_dssp --------------CEEE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGG-SCHHHHHHHHHTTCCC
T ss_pred CchhhhHHHHHHhccCCE-EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhh-ccchhhhhhcccccCc
Confidence 456788999998887755 788889987 8999986 7999887765 578999999999997 32 24
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+...++..+++..+. +++++||++|.|++++|++|++.+.+.
T Consensus 168 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 566677788888887 999999999999999999999988754
No 74
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=5.9e-16 Score=107.25 Aligned_cols=104 Identities=24% Similarity=0.375 Sum_probs=86.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCC------------CC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESK------------RA 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~------------~~ 70 (149)
|-++|+.++..|+++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+. .. +.
T Consensus 62 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 138 (186)
T 1mh1_A 62 GQEDYDRLRPLSYPQTDV-SLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR-DDKDTIEKLKEKKLTP 138 (186)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHH-TCHHHHHHHHHTTCCC
T ss_pred CCHhHHHHHHHhccCCcE-EEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccc-ccchhhhhhccccccc
Confidence 446788999998887755 788889987 8899987 7999888765 378999999999986 32 34
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+...+...++...+. +++++||++|.|++++|++|++.+.+
T Consensus 139 v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 566677778888886 99999999999999999999988753
No 75
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.65 E-value=8.8e-16 Score=109.30 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=86.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~-~~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|.++|..++..|+++++. +++|||+++ .+|..+ ..|+..+.... .++|+++|+||+|+... .+.+
T Consensus 85 G~~~~~~~~~~~~~~~d~-~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 85 GSPYYDNVRPLSYPDSDA-VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV 162 (205)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred CcHhhhHHHHhhccCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCC
Confidence 457899999999888766 788889997 899998 79999987765 57899999999999621 2456
Q ss_pred CHHHHHHHHHHhC-CcEEEecCC-CCCCHHHHHHHHHHHHHH
Q 032001 72 PTSKGQALADEYG-IKFFETSAK-TNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 72 ~~~~~~~~~~~~~-~~~~~~Sak-~~~~i~el~~~l~~~i~~ 111 (149)
...++..+++..+ .+++++||+ ++.|++++|+.|++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 163 SYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 6777888888877 689999999 689999999999988754
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=6.9e-16 Score=105.41 Aligned_cols=103 Identities=26% Similarity=0.314 Sum_probs=85.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALAD 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~ 81 (149)
|.++|..++..++.+.+. +++|||+++ .+++.+..|+..+..... .++|+++|+||+|+. ..+.+.......++.
T Consensus 60 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-~~~~v~~~~~~~~~~ 137 (172)
T 2erx_A 60 GSHQFPAMQRLSISKGHA-FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALAR 137 (172)
T ss_dssp SCSSCHHHHHHHHHHCSE-EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHH
T ss_pred CchhhHHHHHHhcccCCE-EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-cccccCHHHHHHHHH
Confidence 456788888999888765 788889987 889999999988876532 478999999999997 555666677777888
Q ss_pred HhCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 82 EYGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 82 ~~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
..+.+++++||++|.|++++|++|.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 TWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 8899999999999999999999998755
No 77
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=1.6e-17 Score=117.21 Aligned_cols=105 Identities=36% Similarity=0.603 Sum_probs=79.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++|..++..|+++++. +++|||+++ .+|+.+..|+..+......++|+++|+||+|+. ..+.+....+..++...
T Consensus 91 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~ 168 (199)
T 3l0i_B 91 GQERFRTITSSYYRGAHG-IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSL 168 (199)
T ss_dssp TCTTCCCCSCC--CCCSE-EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTT
T ss_pred CcHhHHHHHHHHhhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-ccccCCHHHHHHHHHHc
Confidence 457888999999988765 788899998 899999999999977665689999999999997 54555555566778888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+++++++||++|.|++++|.+|++.+.+
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999876643
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.9e-15 Score=106.32 Aligned_cols=105 Identities=26% Similarity=0.350 Sum_probs=86.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHH-HHHHHHHHHhcCCCCeEEEEeeCCCCCcCC------------CC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDI-RNWIRNIEQHASDNVNKVLVGNKADMDESK------------RA 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~-~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~------------~~ 70 (149)
|.++|..++..|+.+++. +++|||+++ .+|..+ ..|+..+.... +++|+++|+||+|+. .. +.
T Consensus 82 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 158 (207)
T 2fv8_A 82 GQEDYDRLRPLSYPDTDV-ILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLR-SDEHVRTELARMKQEP 158 (207)
T ss_dssp TCTTCTTTGGGGCTTCCE-EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGG-GCHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHhhcCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhh-ccccchhhhhhcccCC
Confidence 456788899999888765 788889997 889998 68988887754 578999999999997 32 34
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+.......++...+. +++++||++|.|++++|++|++.+...
T Consensus 159 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 159 VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 566677778888887 899999999999999999999987643
No 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.64 E-value=9.4e-16 Score=108.37 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=76.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|.++|+.++..|+++++. +++|||+++ .+|.....|+.++.+.. ..++|+++|+||+|+. . .+..+++..++..
T Consensus 78 G~~~~~~~~~~~~~~~d~-~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~--~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 78 GHIQARRVWKNYLPAING-IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP-E--AISEERLREMFGL 153 (198)
T ss_dssp C----CCGGGGGGGGCSE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST-T--CCCHHHHHHHHTC
T ss_pred CcHhhHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc-c--cCCHHHHHHHhCc
Confidence 456789999999998766 788889987 89999999999987642 2579999999999997 2 4455555555442
Q ss_pred -----------------hCCcEEEecCCCCCCHHHHHHHHHHH
Q 032001 83 -----------------YGIKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 83 -----------------~~~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
.+.+++++||++|.|++++|++|++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23579999999999999999999864
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.63 E-value=3.8e-15 Score=104.41 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=80.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC--------CCCeEEEEeeCCCCCcCCCCCCHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSK 75 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~--------~~~~iilv~nK~Dl~~~~~~~~~~~ 75 (149)
|-++|+.++..|+++++. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. ... ...+
T Consensus 72 G~~~~~~~~~~~~~~~d~-ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~--~~~~ 147 (199)
T 4bas_A 72 GAKKFRGLWETYYDNIDA-VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA-GAK--TAAE 147 (199)
T ss_dssp CSGGGGGGGGGGCTTCSE-EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST-TCC--CHHH
T ss_pred CCHhHHHHHHHHHhcCCE-EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC-CCC--CHHH
Confidence 457899999999988766 788889997 899999999998866421 278999999999997 321 1222
Q ss_pred HH-HH-----HHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 76 GQ-AL-----ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 76 ~~-~~-----~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.. .+ ++..+++++++||++|.||+++|++|++.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 11 11 1335678999999999999999999999887764
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.63 E-value=1.2e-15 Score=109.28 Aligned_cols=103 Identities=24% Similarity=0.447 Sum_probs=86.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
|.++|..++..|+++.+. +++|||+++ .+|..+..|+..+.... .++|+++|+||+|+. ... +. .....++...
T Consensus 73 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~-~~~-~~-~~~~~~~~~~ 147 (221)
T 3gj0_A 73 GQEKFGGLRDGYYIQAQC-AIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK-DRK-VK-AKSIVFHRKK 147 (221)
T ss_dssp SGGGTSCCCHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSS-SCS-SC-GGGCCHHHHH
T ss_pred ChHHHhHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccc-ccc-cc-HHHHHHHHHc
Confidence 457899999999998766 788889997 89999999999998865 578999999999997 322 22 2444567778
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+.+++++||++|.|++++|.+|++.+...
T Consensus 148 ~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 148 NLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999988765
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.62 E-value=6.1e-15 Score=103.06 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=79.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCcCCCCCCHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALA 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~ 80 (149)
|.++|+.++..|+.+++. +++|||+++ .+|..+..|+..+..... .++|+++|+||+|+. . .....+.....
T Consensus 76 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~--~~~~~~~~~~~ 151 (190)
T 2h57_A 76 GQGRYRNLWEHYYKEGQA-IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR-D--AVTSVKVSQLL 151 (190)
T ss_dssp CSTTTGGGGGGGGGGCSE-EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST-T--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCE-EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc-c--CCCHHHHHHHh
Confidence 456889999999988865 788889987 889999999999876532 478999999999997 2 23344444443
Q ss_pred H-----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 81 D-----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 81 ~-----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
. ..+.+++++||++|.|++++|++|.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 152 CLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 2 124689999999999999999999987643
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.61 E-value=2.1e-15 Score=107.01 Aligned_cols=102 Identities=25% Similarity=0.398 Sum_probs=84.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCCC------------C
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR------------A 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~------------~ 70 (149)
|-++|..++..|+++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+. ... .
T Consensus 87 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 163 (204)
T 4gzl_A 87 GLEDYDRLRPLSYPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR-DDKDTIEKLKEKKLTP 163 (204)
T ss_dssp CSGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHH-TCHHHHHHHHHTTCCC
T ss_pred CchhhHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhc-cchhhhhhhhcccccc
Confidence 447889999999888766 788889997 8999987 8999888765 678999999999986 322 2
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+...++..+++..+. +++++||++|.|++++|++|++.+
T Consensus 164 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 556677778888875 699999999999999999998753
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.61 E-value=2.3e-15 Score=105.70 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=78.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|-++|+.++..|+++++. +++|||+++ .+|.....|+.++.... ..++|+++|+||+|+. . .+..++.......
T Consensus 76 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~--~~~~~~~~~~~~~ 151 (190)
T 1m2o_B 76 GHIQARRLWKDYFPEVNG-IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP-N--AVSEAELRSALGL 151 (190)
T ss_dssp CSGGGTTSGGGGCTTCCE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST-T--CCCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCCE-EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc-C--CCCHHHHHHHhCC
Confidence 456788999999987755 788899997 89999999999987632 2578999999999997 2 4445554444332
Q ss_pred ------------hCCcEEEecCCCCCCHHHHHHHHHHH
Q 032001 83 ------------YGIKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 83 ------------~~~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
.+.+++++||++|.|++++|++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 152 LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23579999999999999999999753
No 85
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.4e-16 Score=112.73 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=79.9
Q ss_pred ccccccccchhhhhh--------------------cCeEEEEEeeCCh---hhHHHHHHHHHHHHHh-cCCCCeEEEEee
Q 032001 5 RCLCFIGVYPPYLAV--------------------LCRFKYCTYKIAS---YHFSDIRNWIRNIEQH-ASDNVNKVLVGN 60 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~--------------------~~~~vi~v~~~~~---~s~~~~~~~~~~i~~~-~~~~~~iilv~n 60 (149)
+-++|+++++.||+. .++++++|||+++ .+|+.+..|+.++... ...++|+++|+|
T Consensus 127 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 206 (255)
T 3c5h_A 127 AATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLT 206 (255)
T ss_dssp TCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 457888888888871 3466899999986 6999999999998765 335799999999
Q ss_pred CCCCCcCCCCCCHHHHHHHHHH-hCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 61 KADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 61 K~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
|+|+. ..+.+ .+...++.. .+.+++++||++|.|++++|++|++.+
T Consensus 207 K~Dl~-~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 207 KCDEG-VERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CGGGB-CHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccc-ccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 99996 32222 345556655 378999999999999999999999876
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.59 E-value=5.7e-15 Score=100.40 Aligned_cols=103 Identities=7% Similarity=0.004 Sum_probs=76.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|-++|+.++..|+.+++. +++|||+++ .+|.....|+..+... ...++|+++|+||+|+. .. ...........
T Consensus 53 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~--~~~~~~~~~~~~ 128 (164)
T 1r8s_A 53 GQDKIRPLWRHYFQNTQG-LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP-NA--MNAAEITDKLGL 128 (164)
T ss_dssp CCGGGHHHHHHHTTTCSE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TC--CCHHHHHHHTTG
T ss_pred CChhhHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc-CC--CCHHHHHHHhCc
Confidence 446788889888888766 788889987 8999999999988653 22578999999999997 32 22222221111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+++++++||++|.|++++|++|++.+.+
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 129 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 123468999999999999999999987743
No 87
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.59 E-value=3.9e-15 Score=103.65 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=76.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHh-cCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|-++|+.++..|+++++. +++|||+++ .+|.....|+.++... ...++|+++|+||+|+. ... ...+......
T Consensus 69 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~--~~~~~~~~~~~ 144 (181)
T 1fzq_A 69 GQRKIRPYWRSYFENTDI-LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL-TAA--PASEIAEGLNL 144 (181)
T ss_dssp SCGGGHHHHHHHHTTCSE-EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST-TCC--CHHHHHHHTTG
T ss_pred CCHHHHHHHHHHhCCCCE-EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc-cCC--CHHHHHHHhCc
Confidence 446788889999988766 788889987 8999999999887553 22578999999999997 322 2222222111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+.+++++||++|.|++++|++|++.+.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 124578999999999999999999987654
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.7e-14 Score=100.57 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=76.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|-++|+.++..|+++++. +++|||+++ .+|.....|+..+.... ..++|+++|+||+|+. . .....+......
T Consensus 69 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~--~~~~~~i~~~~~~ 144 (187)
T 1zj6_A 69 GQESLRSSWNTYYTNTEF-VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK-E--CMTVAEISQFLKL 144 (187)
T ss_dssp C----CGGGHHHHTTCCE-EEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST-T--CCCHHHHHHHHTG
T ss_pred CCHhHHHHHHHHhcCCCE-EEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc-C--CCCHHHHHHHhCh
Confidence 446789999999988765 788889987 89999999999987642 2578999999999997 2 223333333322
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+++++++||++|.|++++|++|++.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 145 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 234589999999999999999999987743
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.59 E-value=2.2e-15 Score=103.06 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=78.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHH-H--
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQA-L-- 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-~-- 79 (149)
|.++|+.++..|+++++. +++|||+++ .+|.....|+..+.... ..++|+++|+||+|+. ... ...+... +
T Consensus 60 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~--~~~~~~~~~~~ 135 (171)
T 1upt_A 60 GLTSIRPYWRCYYSNTDA-VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME-QAM--TSSEMANSLGL 135 (171)
T ss_dssp CCGGGGGGGGGGCTTCSE-EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TCC--CHHHHHHHHTG
T ss_pred CChhhhHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc-CCC--CHHHHHHHhCc
Confidence 456788999999987766 788889987 88999999998876642 2578999999999997 321 2222221 1
Q ss_pred --HHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 80 --ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 80 --~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+...+++++++||++|.|++++|++|++.+.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 12234579999999999999999999998754
No 90
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.58 E-value=4.3e-15 Score=111.80 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=77.6
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-h-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-Y-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~-s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
-++|+++++.||++++. +++|||+++ . +|..+..|+.++.. .++|+++|+||+||. +.+.+ .+...++..+
T Consensus 71 qer~~~l~~~~~~~ad~-vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~-~~~~v--~~~~~~~~~~ 143 (301)
T 1u0l_A 71 LHRKNLLTKPHVANVDQ-VILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLY-DEDDL--RKVRELEEIY 143 (301)
T ss_dssp CCCSCEETTTTEESCCE-EEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC-CHHHH--HHHHHHHHHH
T ss_pred ccccceeeccccccCCE-EEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcC-CchhH--HHHHHHHHHH
Confidence 47999999999999877 788889986 5 78999999998865 478999999999997 32221 3355666766
Q ss_pred C--CcEEEecCCCCCCHHHHHHHHHH
Q 032001 84 G--IKFFETSAKTNLNVEQVFFSIAR 107 (149)
Q Consensus 84 ~--~~~~~~Sak~~~~i~el~~~l~~ 107 (149)
+ .+++++||++|.|++++|..+..
T Consensus 144 ~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 144 SGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred hhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 6 89999999999999999988764
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.57 E-value=9.6e-15 Score=101.38 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=76.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|.++|+.++..|+++++. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. . .....+......
T Consensus 74 G~~~~~~~~~~~~~~~d~-ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~--~~~~~~i~~~~~~ 149 (181)
T 2h17_A 74 GQESLRSSWNTYYTNTEF-VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK-E--CMTVAEISQFLKL 149 (181)
T ss_dssp SSGGGTCGGGGGGTTCCE-EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-T--CCCHHHHHHHTTG
T ss_pred CCHhHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc-c--CCCHHHHHHHhCc
Confidence 457889999999988765 788889987 89999999998887642 2578999999999997 2 222333333221
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
..+++++++||++|.|++++|++|++.
T Consensus 150 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 150 TSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp GGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 234579999999999999999999753
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.57 E-value=1.2e-14 Score=101.04 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=78.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|-++|+.++..++.+++. +++|||+++ .+|..+..|+.++.... ..++|+++|+||+|+. .. ....+......
T Consensus 71 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~--~~~~~~~~~~~~ 146 (186)
T 1ksh_A 71 GQKSLRSYWRNYFESTDG-LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP-GA--LSCNAIQEALEL 146 (186)
T ss_dssp CSHHHHTTGGGGCTTCSE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TC--CCHHHHHHHTTG
T ss_pred CCHhHHHHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC-CC--CCHHHHHHHhCh
Confidence 346788899999888765 788889987 88999999998887642 2578999999999997 32 22233222211
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+.+++++||++|.|++++|++|++.+.+
T Consensus 147 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 234579999999999999999999998754
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.57 E-value=2.1e-14 Score=108.18 Aligned_cols=105 Identities=24% Similarity=0.357 Sum_probs=87.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcC-----------CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~-----------~~~~ 71 (149)
|-++|..++..|+++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+... .+.+
T Consensus 212 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v 289 (332)
T 2wkq_A 212 GLEDYDRLRPLSYPQTDV-FLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289 (332)
T ss_dssp CCGGGTTTGGGGCTTCSE-EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred CchhhhHHHHHhccCCCE-EEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccc
Confidence 447888999999888766 788889987 8899987 7988887765 37999999999998621 1456
Q ss_pred CHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 72 PTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
...++..++...+. +++++||++|.|++++|+.|++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 67778888888886 99999999999999999999988754
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.57 E-value=1.6e-15 Score=106.68 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=73.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|-++|+.++..++++++. +++|||+++ .+|.....|+..+.... ..++|+++|+||+|+. .. ....+......
T Consensus 82 G~~~~~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~-~~--~~~~~i~~~~~~ 157 (192)
T 2b6h_A 82 GQDKIRPLWRHYFQNTQG-LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP-NA--MPVSELTDKLGL 157 (192)
T ss_dssp -----CTTHHHHHHTCCE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TC--CCHHHHHHHTTG
T ss_pred CCHhHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC-CC--CCHHHHHHHhCc
Confidence 346788999999988766 788889987 89999999999886532 2578999999999997 32 22222221111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
..+++++++||++|.|++++|++|++.+.
T Consensus 158 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 158 QHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 12346899999999999999999998763
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.56 E-value=1.2e-14 Score=102.24 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=75.5
Q ss_pred ccccccccc---hhhhhhcCeEEEEEeeCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcC------CCCCC
Q 032001 5 RCLCFIGVY---PPYLAVLCRFKYCTYKIAS---YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVP 72 (149)
Q Consensus 5 ~~~~~~~~~---~~~~~~~~~~vi~v~~~~~---~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~------~~~~~ 72 (149)
|.++|..+. ..||++++. +++|||+++ +++..+..|+.++.... .++|+++|+||+|+... .+.+.
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~ 155 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGA-LIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIH 155 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSE-EEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCE-EEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHH
Confidence 457787777 788888766 788889986 56666777777765433 58999999999998611 12233
Q ss_pred HHHHHHHHH----HhCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 73 TSKGQALAD----EYGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 73 ~~~~~~~~~----~~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
......++. ..+++++++||++ .||+++|..+++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 156 QRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 334455566 5567899999999 99999999999764
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=3.5e-14 Score=98.23 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=77.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE 82 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~ 82 (149)
|-++|+.++..++.+++. +++|+|+++ .+|.....|+..+.... ..++|+++|+||+|+. . .....+.......
T Consensus 71 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~--~~~~~~i~~~~~~ 146 (183)
T 1moz_A 71 GQTSIRPYWRCYYADTAA-VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP-G--ALSASEVSKELNL 146 (183)
T ss_dssp ----CCTTGGGTTTTEEE-EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST-T--CCCHHHHHHHTTT
T ss_pred CCHhHHHHHHHHhccCCE-EEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC-C--CCCHHHHHHHhCc
Confidence 346788899999887755 788889987 89999999999887643 3678999999999997 2 2223333322211
Q ss_pred -----hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 -----YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 -----~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+++++||++|.|++++|++|++.+.++
T Consensus 147 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 147 VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 234789999999999999999999988654
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.56 E-value=4.1e-15 Score=103.75 Aligned_cols=104 Identities=7% Similarity=-0.005 Sum_probs=78.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHH--
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-- 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-- 80 (149)
|-++|+.++..|+++++. +++|+|+++ .+|.....|+..+.... ..++|+++|+||+|+. .. ....+.....
T Consensus 75 G~~~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~--~~~~~~~~~~~~ 150 (189)
T 2x77_A 75 GQTGVRPYWRCYFSDTDA-VIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP-DA--ASEAEIAEQLGV 150 (189)
T ss_dssp CSSSSCCCCSSSSTTCCE-EEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST-TC--CCHHHHHHHTTG
T ss_pred CCHhHHHHHHHHhhcCCE-EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc-CC--CCHHHHHHHhCh
Confidence 346788999999887766 788889987 88999999998886643 2578999999999997 32 1222222111
Q ss_pred ---HHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 81 ---DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 81 ---~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
...+.+++++||++|.|++++|++|.+.+.+.
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 151 SSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred hhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 12235799999999999999999999988653
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=2.4e-13 Score=95.75 Aligned_cols=108 Identities=30% Similarity=0.512 Sum_probs=90.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++|+.++..++.+.+. +++|||+++ .+|..+..|+..+......+.|+++|+||+|+. ..+.+....+..++...
T Consensus 63 g~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~ 140 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVG-ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKN 140 (199)
T ss_dssp SGGGTTCCCHHHHTTCSE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHT
T ss_pred CchhhhhhhHHHHhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHc
Confidence 346788889988887655 788899987 889999999988876554678999999999997 54556667778888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHHHhc
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 114 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i~~~~~ 114 (149)
++.++.+||+++.|++++|+.|.+.+.+...
T Consensus 141 ~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 141 NLSFIETSALDSTNVEEAFKNILTEIYRIVS 171 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998876543
No 99
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.54 E-value=1.4e-14 Score=101.27 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=76.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. .. ....+......
T Consensus 76 G~~~~~~~~~~~~~~~d~-ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~--~~~~~~~~~~~~ 151 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSA-IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP-GA--LDEKELIEKMNL 151 (188)
T ss_dssp CSHHHHTTHHHHHTTCSE-EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST-TC--CCHHHHHHHTTG
T ss_pred CCHhHHHHHHHHHccCCE-EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc-cC--CCHHHHHHHhCh
Confidence 446788899999887765 788889987 89999999998886632 2578999999999997 22 22222221111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
..+.+++++||++|.|++++|++|++.+.
T Consensus 152 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12357899999999999999999998664
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.53 E-value=7.1e-15 Score=102.47 Aligned_cols=105 Identities=14% Similarity=0.260 Sum_probs=78.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCC---HHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS--YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQAL 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~--~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~---~~~~~~~ 79 (149)
|-++|..+++.|+++.+. +++|||+++ .+|+.+..|+.++.... .++|+++|+||+|+. ..+.+. ......+
T Consensus 65 G~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~ 141 (184)
T 2zej_A 65 GREEFYSTHPHFMTQRAL-YLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVS-DEKQRKACMSKITKEL 141 (184)
T ss_dssp SHHHHHTTSHHHHHHSEE-EEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGC-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHhhHHHccCCcE-EEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcc-cchhhHHHHHHHHHHH
Confidence 346788899888887654 778899986 47999999999987654 478999999999987 322211 1122334
Q ss_pred HHHhCCc----EEEecCCCCC-CHHHHHHHHHHHHHHH
Q 032001 80 ADEYGIK----FFETSAKTNL-NVEQVFFSIARDIKQR 112 (149)
Q Consensus 80 ~~~~~~~----~~~~Sak~~~-~i~el~~~l~~~i~~~ 112 (149)
++..+++ ++++||++|. ++++++..+.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 142 LNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp TTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 4445665 8999999996 9999999999877653
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=107.62 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=80.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCCC------------C
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR------------A 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~------------~ 70 (149)
|-++|..++..|+++++. +++|||+++ .+|..+. .|+..+.... .++|+++|+||+|+. ... .
T Consensus 87 G~~~~~~~~~~~~~~~d~-iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~ 163 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDV-FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR-DDKDTIEKLKEKKLTP 163 (204)
Confidence 346788899999888765 788889987 8899886 8988887654 378999999999997 322 3
Q ss_pred CCHHHHHHHHHHhCC-cEEEecCCCCCCHHHHHHHHHHHH
Q 032001 71 VPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 71 ~~~~~~~~~~~~~~~-~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+....+..+++..+. +++++||++|.|++++|++|++.+
T Consensus 164 v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 344455666777776 899999999999999999998754
No 102
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.49 E-value=2.3e-14 Score=110.05 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=82.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-----------hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCC----
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-----------YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESK---- 68 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-----------~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~---- 68 (149)
|-++|+++|+.||+++++ +|+|||+++ .++.....|+..+..+. ..++|+|+++||+|+.+..
T Consensus 202 GQe~~r~~w~~yf~~a~~-iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~ 280 (353)
T 1cip_A 202 GQRSERKKWIHCFEGVTA-IIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 280 (353)
T ss_dssp CSGGGGGGGGGGCTTCSE-EEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTS
T ss_pred CchhhhHHHHHHHhcCCE-EEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhcccc
Confidence 457899999999999876 688888886 35888888888887632 2579999999999985110
Q ss_pred ----------CCCCHHHHHHHHHH-----------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 69 ----------RAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 69 ----------~~~~~~~~~~~~~~-----------~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+...++..++.. .++.++++||+++.||.++|.++++.+...
T Consensus 281 ~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 281 PLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 02455666666652 356788999999999999999999988654
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=6.1e-13 Score=93.32 Aligned_cols=103 Identities=32% Similarity=0.563 Sum_probs=86.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 83 (149)
+.++|+.++..++.+.+. +++|||+++ .+|+.+..|+.++......+.|+++|+||+|+. ..+.+....+..++...
T Consensus 87 g~~~~~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~ 164 (191)
T 1oix_A 87 GLERYRAITSAYYRGAVG-ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKN 164 (191)
T ss_dssp SCCSSSCCCHHHHTTCCE-EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHT
T ss_pred CCcchhhhhHHHhhcCCE-EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHc
Confidence 346788999999887655 688889987 789999899988876554678999999999997 44556677788888888
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 84 GIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 84 ~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
++.++.+||+++.+++++|+.|.+.+
T Consensus 165 ~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 165 GLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998765
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=104.54 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=74.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|.++|..++..|+++++. +++|||+++ .+|..+..|+..+.... ..++|+++|+||+|+. ... ..........
T Consensus 218 G~~~~~~~~~~~~~~ad~-vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~-~~~--~~~~i~~~~~~ 293 (329)
T 3o47_A 218 GQDKIRPLWRHYFQNTQG-LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP-NAM--NAAEITDKLGL 293 (329)
T ss_dssp -----CCSHHHHHTTEEE-EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TCC--CHHHHHHHHTC
T ss_pred CCHhHHHHHHHHhccCCE-EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC-ccc--CHHHHHHHhch
Confidence 457899999999988755 788899987 89999998888876533 2579999999999997 221 2222222111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+++++++||++|.||+++|++|++.+.+
T Consensus 294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 123468999999999999999999987743
No 105
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.46 E-value=5.1e-14 Score=108.20 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=79.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCC----------h-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcC-CCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIA----------S-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDES-KRAV 71 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~----------~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~-~~~~ 71 (149)
|-++|+++|+.||+++++ +|+|||++ + .+|.....|+..+.+.. ..++|+|+|+||+|+.+. ...+
T Consensus 192 GQe~~r~~~~~y~~~~~~-iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v 270 (354)
T 2xtz_A 192 GQRNERRKWIHLFEGVTA-VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDV 270 (354)
T ss_dssp CSTTGGGGTGGGCTTEEE-EEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTS
T ss_pred CchhhhHHHHHHhCCCCE-EEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccc
Confidence 457899999999999876 78888986 5 78999999999887642 267999999999998511 0011
Q ss_pred -------------------CHHHHHHHHHH----------------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 72 -------------------PTSKGQALADE----------------YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 72 -------------------~~~~~~~~~~~----------------~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+++..++.. ..+.++++||+++.||.++|+++++.+...
T Consensus 271 ~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 271 PLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp CGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 12344444322 123468999999999999999999988654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.46 E-value=2.7e-13 Score=108.04 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=77.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC-CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
|.++|+.++..||++++. +|+|||+++ .+|..+..|+.++..... .++|+|+|+||+|+. . .....+......
T Consensus 375 G~~~~~~~~~~~~~~ad~-~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~--~~~~~~~~~~~~~ 450 (497)
T 3lvq_E 375 GQDKIRPLWRHYYTGTQG-LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP-D--AMKPHEIQEKLGL 450 (497)
T ss_dssp CCGGGSGGGGGGGTTCCE-EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS-S--CCCHHHHHHHTTC
T ss_pred CcHHHHHHHHHHhccCCE-EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC-c--CCCHHHHHHHhch
Confidence 457899999999988766 788889987 899999999998866432 579999999999997 2 222222222111
Q ss_pred ----HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 82 ----EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 82 ----~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+.+++++||++|.||+++|++|++.+...
T Consensus 451 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 451 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred hhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 1123599999999999999999999877443
No 107
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=2.3e-13 Score=102.39 Aligned_cols=97 Identities=16% Similarity=0.060 Sum_probs=75.6
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-h-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCC-HHHHHHHHHH
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-Y-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADE 82 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~-s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~-~~~~~~~~~~ 82 (149)
-+||..+.+.|+++++. +++|+|+++ . ++..++.|+..+.. .++|+++|+||+|+. +...+. ......+.+.
T Consensus 66 ~er~~~l~r~~~~naD~-vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~-~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDR-VIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL-NEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCE-EEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCE-EEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC-CccccHHHHHHHHHHHH
Confidence 47889999999998877 688889984 4 89989999998766 578999999999997 322111 2333445566
Q ss_pred hCCcEEEecCCCCCCHHHHHHHHHH
Q 032001 83 YGIKFFETSAKTNLNVEQVFFSIAR 107 (149)
Q Consensus 83 ~~~~~~~~Sak~~~~i~el~~~l~~ 107 (149)
.+.+++++||++|.|+++++..+..
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhccC
Confidence 7889999999999999999987643
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.43 E-value=2.4e-13 Score=93.10 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred ccchhhhh-hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEE
Q 032001 11 GVYPPYLA-VLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 89 (149)
Q Consensus 11 ~~~~~~~~-~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
.+...|++ ...+++++|+|.++ ++....|+.++.+ .++|+++|+||+|+. ..+.+.. ....+++..+.++++
T Consensus 71 ~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~-~~~~~~~-~~~~~~~~~~~~~~~ 143 (165)
T 2wji_A 71 IIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLME---MGANLLLALNKMDLA-KSLGIEI-DVDKLEKILGVKVVP 143 (165)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHH---TTCCEEEEEECHHHH-HHTTCCC-CHHHHHHHHTSCEEE
T ss_pred HHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHh---cCCCEEEEEEchHhc-cccChhh-HHHHHHHHhCCCEEE
Confidence 45577776 24567889999885 3445668887765 368999999999986 3223322 345677778899999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 032001 90 TSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 90 ~Sak~~~~i~el~~~l~~~i 109 (149)
+||++|.|++++|++|++.+
T Consensus 144 ~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 144 LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CBGGGTBSHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 109
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.41 E-value=6.9e-14 Score=106.19 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred ccccccc---cchhhhhhcCeEEEEEeeCChh---hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCC-------CCC
Q 032001 5 RCLCFIG---VYPPYLAVLCRFKYCTYKIASY---HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESK-------RAV 71 (149)
Q Consensus 5 ~~~~~~~---~~~~~~~~~~~~vi~v~~~~~~---s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~-------~~~ 71 (149)
|-|+|++ +++.||+++++ +++|||+++. ++.....|+.++.... +++|++++|||+|+. .. +.+
T Consensus 55 GQErf~~~~l~~~~yyr~a~~-~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~-~~~~R~~~~R~V 131 (331)
T 3r7w_B 55 GQLNYFEPSYDSERLFKSVGA-LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGL-SEDFKVDAQRDI 131 (331)
T ss_dssp SCSSSCCCSHHHHHHHTTCSE-EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSS-CSHHHHHHHHHH
T ss_pred CchhccchhhhhhhhccCCCE-EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccC-chhhhhhHHHHh
Confidence 5678875 46889988766 7888899864 2333334455544433 579999999999997 32 223
Q ss_pred CHHHHHHHHHH----hCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 72 PTSKGQALADE----YGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 72 ~~~~~~~~~~~----~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
...++..+++. .++.++++||++ .+|.++|..+++.+..
T Consensus 132 ~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 132 MQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred hHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 34445555554 467899999997 6999999999976643
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.40 E-value=8.5e-13 Score=91.56 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=73.9
Q ss_pred cccccccchhhhhh-cCeEEEEEeeCCh-hhHHHH-HHHHHH--------HHH-hcCCCCeEEEEeeCCCCCcCCCCCCH
Q 032001 6 CLCFIGVYPPYLAV-LCRFKYCTYKIAS-YHFSDI-RNWIRN--------IEQ-HASDNVNKVLVGNKADMDESKRAVPT 73 (149)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~vi~v~~~~~-~s~~~~-~~~~~~--------i~~-~~~~~~~iilv~nK~Dl~~~~~~~~~ 73 (149)
.++|..++..|+++ ++. +++++++.+ .+|..+ ..|... +.. ....++|+++|+||+|+. ... .
T Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~---~ 139 (190)
T 2cxx_A 65 QERIKDEIVHFIEDNAKN-IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI-KNV---Q 139 (190)
T ss_dssp HHHHHHHHHHHHHHHGGG-CCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC-SCH---H
T ss_pred HHHHHHHHHHHHHhhhcc-CCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc-CcH---H
Confidence 46788889999987 554 344444444 677776 677653 222 122578999999999997 322 4
Q ss_pred HHHHHHHHHhCCc-------EEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 74 SKGQALADEYGIK-------FFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 74 ~~~~~~~~~~~~~-------~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
.....+++..+.+ ++++||++|.|++++|++|++.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 140 EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 5566777777753 699999999999999999999886643
No 111
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.40 E-value=1.3e-13 Score=104.86 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=80.2
Q ss_pred ccccccccchhhhhhcCeEEEEEeeC----------Ch-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCC---
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKI----------AS-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKR--- 69 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~----------~~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~--- 69 (149)
|-++|+++|.+||+++.+ +|+|||+ ++ .++.....|+..+.... ..++|+++++||+|+. ..+
T Consensus 176 GQe~~R~~w~~yf~~~~~-iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~-~~ki~~ 253 (327)
T 3ohm_A 176 GQRSERRKWIHCFENVTS-IMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL-EEKIMY 253 (327)
T ss_dssp CSHHHHTTGGGGCSSCSE-EEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH-HHHTTT
T ss_pred CchhHHHHHHHHhCCCCE-EEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh-hhhhcc
Confidence 457899999999999877 6777754 34 67888888888876532 2679999999999985 211
Q ss_pred -------------CCCHHHHHHHHH----------HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 70 -------------AVPTSKGQALAD----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 70 -------------~~~~~~~~~~~~----------~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+..+.+..+.. ..++.++++||+++.||+++|..+++.+.+.
T Consensus 254 ~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 254 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp SCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 344555655532 2345678999999999999999999988764
No 112
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.39 E-value=5.8e-13 Score=103.74 Aligned_cols=106 Identities=12% Similarity=0.023 Sum_probs=79.7
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-----------hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCCCC--
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-----------YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRA-- 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-----------~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~~~-- 70 (149)
|-++|+++|+.||+++.+ +|+|||+++ .+|.....|+..+.+.. ..++|+|+|+||+|+. ..+.
T Consensus 226 GQe~~r~~w~~yf~~a~~-iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~-~~ki~~ 303 (402)
T 1azs_C 226 GQRDERRKWIQCFNDVTA-IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL-AEKVLA 303 (402)
T ss_dssp CSGGGGGGGGGGTTTCCE-EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH-HHHHHH
T ss_pred hhhhhhhhhHhhccCCCE-EEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh-hhhhcc
Confidence 557899999999998876 788888875 58999999999987742 3679999999999985 2111
Q ss_pred -C---------------------------CHHHHHHH-----HHH--------hCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 71 -V---------------------------PTSKGQAL-----ADE--------YGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 71 -~---------------------------~~~~~~~~-----~~~--------~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+ ....+..+ +.. .++.++++||+++.||.++|..+.+.+
T Consensus 304 ~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 304 GKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp CSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 1 02334333 222 134567999999999999999999888
Q ss_pred HHH
Q 032001 110 KQR 112 (149)
Q Consensus 110 ~~~ 112 (149)
...
T Consensus 384 ~~~ 386 (402)
T 1azs_C 384 QRM 386 (402)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.39 E-value=3.1e-12 Score=92.00 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=68.3
Q ss_pred hhcCeEEEEEeeCCh-hhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHH---HHHHHHHHhC--CcEEE
Q 032001 18 AVLCRFKYCTYKIAS-YHFS--DIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKFFE 89 (149)
Q Consensus 18 ~~~~~~vi~v~~~~~-~s~~--~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~~~ 89 (149)
....+++++|||+++ .+|. ....|+..+.... .++|+++|+||+|+. ..+.+... ....++...+ .++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKC-NMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGC-C--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccC-CchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 344567899999987 6664 2346666665432 378999999999997 44444443 3455666666 78999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 90 TSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 90 ~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
+||++|.||+++|++|++.+.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887553
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.38 E-value=2.1e-12 Score=91.65 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=64.2
Q ss_pred cccccc-cchhhhhhcCeEEEEEeeCCh--hhHHHHHHHHHH-HHHh--cCCCCeEEEEeeCCCCCcCCCCCCHHHHHHH
Q 032001 6 CLCFIG-VYPPYLAVLCRFKYCTYKIAS--YHFSDIRNWIRN-IEQH--ASDNVNKVLVGNKADMDESKRAVPTSKGQAL 79 (149)
Q Consensus 6 ~~~~~~-~~~~~~~~~~~~vi~v~~~~~--~s~~~~~~~~~~-i~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 79 (149)
-++|+. ++..|+++++. +++|||+++ .++.....|+.. +... ...++|+++|+||+|+. ..... ......+
T Consensus 64 ~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~-~~~~~~l 140 (214)
T 2fh5_B 64 HESLRFQLLDRFKSSARA-VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA-MAKSA-KLIQQQL 140 (214)
T ss_dssp CHHHHHHHHHHHGGGEEE-EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST-TCCCH-HHHHHHH
T ss_pred ChhHHHHHHHHHHhhCCE-EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC-CcccH-HHHHHHH
Confidence 456776 78888777655 788889986 346565554444 4332 23578999999999997 32221 1111111
Q ss_pred H---H---------------------------------Hh--CCcEEEecCCCC------CCHHHHHHHHHHH
Q 032001 80 A---D---------------------------------EY--GIKFFETSAKTN------LNVEQVFFSIARD 108 (149)
Q Consensus 80 ~---~---------------------------------~~--~~~~~~~Sak~~------~~i~el~~~l~~~ 108 (149)
. . .. +.+++++||++| .||+++|++|++.
T Consensus 141 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 141 EKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 1 01 457999999999 9999999999874
No 115
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.37 E-value=3.8e-13 Score=103.59 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=75.1
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-----------hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCC----
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-----------YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESK---- 68 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-----------~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~---- 68 (149)
|-++|+++|+.||+++.+ +|+|||+++ .++.....|+..+.+.. ..++|+|+++||+|+.+..
T Consensus 210 Gq~~~r~~w~~~f~~~~~-iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~ 288 (362)
T 1zcb_A 210 GQRSERKRWFECFDSVTS-ILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV 288 (362)
T ss_dssp C-------CTTSCTTCCE-EEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTC
T ss_pred chhhhhhhHHHHhCCCCE-EEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhcccc
Confidence 457899999999998876 677778875 47888889998887642 2579999999999985111
Q ss_pred -----------CCCCHHHHHHHHH-----------HhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 69 -----------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 69 -----------~~~~~~~~~~~~~-----------~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
..+....+..++. ..++.++++||+++.||.++|.++++.+...
T Consensus 289 ~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 289 SIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp CGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 1144555555541 2346788999999999999999999988654
No 116
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.33 E-value=2.4e-12 Score=97.01 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=74.1
Q ss_pred cccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCcC--CCC----CCHHHHHHHH
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHA--SDNVNKVLVGNKADMDES--KRA----VPTSKGQALA 80 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~--~~~~~iilv~nK~Dl~~~--~~~----~~~~~~~~~~ 80 (149)
..++..||++++. +++|||+++ .+|+.+..|...+.... .+++|+++|+||+|+. . .+. +....+..++
T Consensus 71 ~~~~~~~~~~ad~-vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~-~~~~r~~~~~v~~~~~~~~~ 148 (307)
T 3r7w_A 71 TKQKDHIFQMVQV-LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV-QLDKREELFQIMMKNLSETS 148 (307)
T ss_dssp TTTHHHHHTTCSE-EEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccCCE-EEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc-chhhhhHHHHHHHHHHHHHH
Confidence 6788888887765 788899997 89999987765554321 3579999999999997 3 222 3345566777
Q ss_pred HHhC---CcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 81 DEYG---IKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 81 ~~~~---~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
...| .+++++||++ .++.++|..++..+
T Consensus 149 ~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 149 SEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 7776 6899999999 88999988887643
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.33 E-value=2.8e-12 Score=103.15 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 84 (149)
|-++|..++..++++. +++++|+|++. ++....|+..+.... .+.|+|+|+||+|+. ..+.+.......++...+
T Consensus 107 G~e~~~~~~~~~l~~~-d~ii~V~D~s~--~~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~ 181 (535)
T 3dpu_A 107 GQEIMHASHQFFMTRS-SVYMLLLDSRT--DSNKHYWLRHIEKYG-GKSPVIVVMNKIDEN-PSYNIEQKKINERFPAIE 181 (535)
T ss_dssp SCCTTTTTCHHHHHSS-EEEEEEECGGG--GGGHHHHHHHHHHHS-SSCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGT
T ss_pred cHHHHHHHHHHHccCC-cEEEEEEeCCC--chhHHHHHHHHHHhC-CCCCEEEEEECCCcc-cccccCHHHHHHHHHhcC
Confidence 3467888888888875 55788888874 467789999998866 468999999999997 556666667777777778
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+++++||++|.|++++|+.|++.+.+
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhc
Confidence 889999999999999999999988754
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=2.1e-12 Score=89.63 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred ccchhhhhh-cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEE
Q 032001 11 GVYPPYLAV-LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 89 (149)
Q Consensus 11 ~~~~~~~~~-~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
.++..|++. ..+++++|+|.+ +++....|+..+.. .++|+++|+||+|+. ....+. .....+++..+.++++
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~---~~~piilv~nK~Dl~-~~~~~~-~~~~~~~~~~~~~~~~ 147 (188)
T 2wjg_A 75 IIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLME---MGANLLLALNKMDLA-KSLGIE-IDVDKLEKILGVKVVP 147 (188)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHT---TTCCEEEEEECHHHH-HHTTCC-CCHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHh---cCCCEEEEEEhhhcc-ccccch-HHHHHHHHHhCCCeEE
Confidence 457777764 356688888887 46677788888765 468999999999986 322222 2455677778899999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Q 032001 90 TSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 90 ~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+||+++.|++++|+++++.+.+.
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEecCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999887543
No 119
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=6.7e-12 Score=99.22 Aligned_cols=103 Identities=10% Similarity=-0.069 Sum_probs=76.1
Q ss_pred cccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh--
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-- 83 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 83 (149)
-|+|..++..++...++++++|+|.+....+....|...+.. .++|+|+|+||+|+. ..+....++....+...
T Consensus 263 ~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~ 338 (456)
T 4dcu_A 263 TEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE---AGKAVVIVVNKWDAV-DKDESTMKEFEENIRDHFQ 338 (456)
T ss_dssp CSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH---TTCEEEEEEECGGGS-CCCSSHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH---cCCCEEEEEEChhcC-CCchHHHHHHHHHHHHhcc
Confidence 377888888755556666888889886323445566666655 468999999999997 44444445555555443
Q ss_pred ---CCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 ---GIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ---~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+.+++++||++|.|++++|..+.+.+.+.
T Consensus 339 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 339 FLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp GGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999877654
No 120
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.31 E-value=9.1e-12 Score=85.44 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=65.5
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh-
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY- 83 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~- 83 (149)
|-++|..++..++..++. +++|||+++........++..+.. .++|+++|+||+|+. .. ............
T Consensus 64 G~~~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~l~~~~~---~~~p~ilv~nK~Dl~-~~---~~~~~~~~~~~~~ 135 (178)
T 2lkc_A 64 GHEAFTTMRARGAQVTDI-VILVVAADDGVMPQTVEAINHAKA---ANVPIIVAINKMDKP-EA---NPDRVMQELMEYN 135 (178)
T ss_dssp SSSSSSCSCCSSCCCCCE-EEEEEETTCCCCHHHHHHHHHHGG---GSCCEEEEEETTTSS-CS---CHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHhhCCE-EEEEEECCCCCcHHHHHHHHHHHh---CCCCEEEEEECccCC-cC---CHHHHHHHHHhcC
Confidence 346788888888766654 788888875211222222233222 468999999999997 32 122222222221
Q ss_pred ------C--CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 84 ------G--IKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 84 ------~--~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+ .+++++||++|.|++++|++|++.+...
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 136 LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 1 4799999999999999999999877553
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.29 E-value=4.2e-12 Score=88.54 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=68.1
Q ss_pred cccccccchhhhhhcC--eEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH-
Q 032001 6 CLCFIGVYPPYLAVLC--RFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD- 81 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~- 81 (149)
.++|..++..|+.+.. +++++|+|.++ .++.... ++..+.. .++|+++|+||+|+. ....+.. ....+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~-~~~~~~~-~~~~~~~~ 162 (195)
T 1svi_A 89 REAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKI-PKGKWDK-HAKVVRQT 162 (195)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGS-CGGGHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccC-ChHHHHH-HHHHHHHH
Confidence 4677888888888774 66888999886 5565542 2222322 468999999999997 3222211 1122222
Q ss_pred ---HhCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 82 ---EYGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 82 ---~~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
..+.+++++||++|.|++++|++|.+.+
T Consensus 163 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 163 LNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 2356899999999999999999999876
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.29 E-value=4.2e-12 Score=88.28 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=68.1
Q ss_pred cccccccchhhhhhcC--eEEEEEeeCCh---hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--CCHHHHHH
Q 032001 6 CLCFIGVYPPYLAVLC--RFKYCTYKIAS---YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQA 78 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~vi~v~~~~~---~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~ 78 (149)
.++|..++..|+++.. +++++|+|.+. ..+..+..|+... ++|+++|+||+|+. .... ........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~ 160 (195)
T 3pqc_A 88 RMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKV-KMSERAKKLEEHRK 160 (195)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGS-CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcC-ChHHHHHHHHHHHH
Confidence 5568888899998874 56788888764 2233334454432 58999999999986 2221 11223334
Q ss_pred HHHHhC-CcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 79 LADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 79 ~~~~~~-~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
++...+ .+++++||++|.|++++|++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 161 VFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 444433 689999999999999999999987743
No 123
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.27 E-value=1.6e-12 Score=99.26 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=79.6
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCC----------h-hhHHHHHHHHHHHHHhc-CCCCeEEEEeeCCCCCcCC----
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIA----------S-YHFSDIRNWIRNIEQHA-SDNVNKVLVGNKADMDESK---- 68 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~----------~-~s~~~~~~~~~~i~~~~-~~~~~iilv~nK~Dl~~~~---- 68 (149)
|.++|+++|..||+++.+ +|+|||++ + .++.....|+..+.... ..++|+++++||+|+.+..
T Consensus 170 GQe~~R~~w~~yy~~a~~-iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~ 248 (340)
T 4fid_A 170 GQRSERKXWVSFFSDVDC-AIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKV 248 (340)
T ss_dssp SCHHHHHHHHTTSCSCSE-EEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHS
T ss_pred CcccccccHHHHhccCCE-EEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcc
Confidence 567899999999999877 67788886 5 78888888888887643 2679999999999985100
Q ss_pred ----------CCCCHHHHHHHH-HHh--------------------------CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 69 ----------RAVPTSKGQALA-DEY--------------------------GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 69 ----------~~~~~~~~~~~~-~~~--------------------------~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.....+.+..+. ..+ ++.+.++||++..||..+|..+.+.+.+
T Consensus 249 ~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 249 PLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 011234443333 223 2567899999999999999999999876
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.26 E-value=1.5e-11 Score=92.69 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=76.8
Q ss_pred cccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhC--
Q 032001 8 CFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-- 84 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 84 (149)
.+...+..++.+++. +++|+|.++ .++.....|+..+.. .++|+++|+||+|+. ............+....+
T Consensus 81 ~~~~~~~~~l~~aD~-il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~-~~~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 81 SMVEIAKQSLEEADV-ILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKI-GPAKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHHHHHCSE-EEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGS-SSGGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhhcCCE-EEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCC-CCHHHHHHHHHHHHHhccCC
Confidence 344566777777655 788889987 778888888888766 368999999999986 334444555666777765
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+++++||++|.|++++|+.|.+.+.+
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 689999999999999999999987743
No 125
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.23 E-value=3.2e-12 Score=88.17 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=62.8
Q ss_pred hhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCC
Q 032001 16 YLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~ 94 (149)
+++++ +++++|||.++ .+++ ...|+..+.+....++|+++|+||+|+. ..... ++...+.+++++||++
T Consensus 80 ~~~~a-d~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~-------~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 80 EIEQA-DRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADIT-GETLG-------MSEVNGHALIRLSART 149 (172)
T ss_dssp HHHTC-SEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHH-CCCCE-------EEEETTEEEEECCTTT
T ss_pred HHHhC-CEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCC-cchhh-------hhhccCCceEEEeCCC
Confidence 45555 55888899987 6765 4578888877655679999999999986 22110 1112356899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 032001 95 NLNVEQVFFSIARDIK 110 (149)
Q Consensus 95 ~~~i~el~~~l~~~i~ 110 (149)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998663
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.21 E-value=1.1e-10 Score=89.52 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=70.6
Q ss_pred hcCeEEEEEeeCCh-h--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCC
Q 032001 19 VLCRFKYCTYKIAS-Y--HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 95 (149)
Q Consensus 19 ~~~~~vi~v~~~~~-~--s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~ 95 (149)
...+++++|+|+++ . ++.....|+.++....+ +.|+++|+||.|+. .... ......++...+.+++++||++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~-~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA-DEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC-CHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC-ChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 34677899999876 4 68888899999877553 78999999999997 3211 13344555667789999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 032001 96 LNVEQVFFSIARDIKQR 112 (149)
Q Consensus 96 ~~i~el~~~l~~~i~~~ 112 (149)
.|++++|+++.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.20 E-value=3.1e-11 Score=89.56 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=69.1
Q ss_pred ccchhhhhh-cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEE
Q 032001 11 GVYPPYLAV-LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 89 (149)
Q Consensus 11 ~~~~~~~~~-~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
.++..|+.. ..+++++|+|.++ ++....|...+.. .++|+++|+||+|+. ..+.+. .....++...++++++
T Consensus 70 ~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~---~~~p~ilv~NK~Dl~-~~~~~~-~~~~~l~~~lg~~vi~ 142 (272)
T 3b1v_A 70 KVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIE---TGIPVTIALNMIDVL-DGQGKK-INVDKLSYHLGVPVVA 142 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHH---TCSCEEEEEECHHHH-HHTTCC-CCHHHHHHHHTSCEEE
T ss_pred HHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHh---cCCCEEEEEEChhhC-CcCCcH-HHHHHHHHHcCCCEEE
Confidence 456777764 4567899999986 2334567776665 468999999999986 322222 2345677778999999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 032001 90 TSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 90 ~Sak~~~~i~el~~~l~~~i 109 (149)
+||++|.|++++|+++++.+
T Consensus 143 ~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSC
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.19 E-value=9.4e-11 Score=92.16 Aligned_cols=100 Identities=12% Similarity=-0.014 Sum_probs=71.2
Q ss_pred ccccccchh-hhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHH-HHHHHH-
Q 032001 7 LCFIGVYPP-YLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADE- 82 (149)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~-~~~~~~- 82 (149)
|+|..++.. ++++ ++++++|+|+++ .++.+. .|...+.. .++|+++|+||+|+. +.......+. ..+...
T Consensus 244 e~~~~~~~~~~~~~-ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~-~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 244 EKYSVLRALKAIDR-SEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAV-DKDESTMKEFEENIRDHF 317 (436)
T ss_dssp SHHHHHHHHHHHHH-CSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGS-CCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-CCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCC-CcchHHHHHHHHHHHHhc
Confidence 667666665 4555 566889999987 666654 57777665 468999999999997 4333322222 222222
Q ss_pred ---hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 ---YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 ---~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+++++||++|.|++++|..+.+.+.+.
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999877653
No 129
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.16 E-value=8.5e-11 Score=86.49 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=67.2
Q ss_pred hhhhh-hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecC
Q 032001 14 PPYLA-VLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 92 (149)
Q Consensus 14 ~~~~~-~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 92 (149)
..|+. ...+++++|+|.++ ++....|...+.. .++|+++|+||+|+. ..+.+.. ....+++..+++++++||
T Consensus 76 ~~~~~~~~~d~ii~V~D~t~--~~~~~~~~~~l~~---~~~pvilv~NK~Dl~-~~~~i~~-~~~~l~~~lg~~vi~~SA 148 (258)
T 3a1s_A 76 RDYLLKGDADLVILVADSVN--PEQSLYLLLEILE---MEKKVILAMTAIDEA-KKTGMKI-DRYELQKHLGIPVVFTSS 148 (258)
T ss_dssp HHHHHHSCCSEEEEEEETTS--CHHHHHHHHHHHT---TTCCEEEEEECHHHH-HHTTCCB-CHHHHHHHHCSCEEECCT
T ss_pred HHHHhhcCCCEEEEEeCCCc--hhhHHHHHHHHHh---cCCCEEEEEECcCCC-CccchHH-HHHHHHHHcCCCEEEEEe
Confidence 56665 35577899999986 2233457666655 368999999999986 3233322 256677888999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 032001 93 KTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 93 k~~~~i~el~~~l~~~i~ 110 (149)
++|.|++++|+.+.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998664
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.16 E-value=1.2e-10 Score=89.03 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=76.0
Q ss_pred cccccchhhhhh--cCeEEEEEeeCCh----hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCcCCCCCCHHHHHHH
Q 032001 8 CFIGVYPPYLAV--LCRFKYCTYKIAS----YHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQAL 79 (149)
Q Consensus 8 ~~~~~~~~~~~~--~~~~vi~v~~~~~----~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 79 (149)
.+..+...|++. ..+++++|+|+++ .++.....|+.++..+.. .++|+++|+||+|+. .. .+....+
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~-~~----~e~~~~l 296 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP-EA----AENLEAF 296 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST-TH----HHHHHHH
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC-CC----HHHHHHH
Confidence 455677777765 2466888889863 578889999999987643 478999999999987 21 1334555
Q ss_pred HHHhC--CcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 80 ADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 80 ~~~~~--~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+... .+++++||+++.|+++++.+|.+.+.+
T Consensus 297 ~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 297 KEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 66655 689999999999999999999988744
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.16 E-value=3.6e-11 Score=85.61 Aligned_cols=101 Identities=11% Similarity=-0.053 Sum_probs=66.8
Q ss_pred ccccccchhhhhhcC--eEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCC--HHHHHHHHH
Q 032001 7 LCFIGVYPPYLAVLC--RFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQALAD 81 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~--~~~~~~~~~ 81 (149)
++|..++..|++... +++++|+|.++ .+ .....|+..+.. .++|+++|+||+|+. ...... .........
T Consensus 100 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 100 AHWEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKL-TRQESINALRATQKSLD 174 (223)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccC-ChhhHHHHHHHHHHHHH
Confidence 556777888888853 45788888875 22 233455555544 468999999999987 221111 111122222
Q ss_pred H-------hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 82 E-------YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 82 ~-------~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
. .+.+++++||++|.|++++|++|.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2 346899999999999999999999988544
No 132
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.14 E-value=1.8e-11 Score=82.58 Aligned_cols=89 Identities=12% Similarity=-0.007 Sum_probs=59.2
Q ss_pred cccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC-cE
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KF 87 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 87 (149)
..++..++...+. +++|+|.++ .+. ...|+.+.... .++|+++|+||+|+. ... .....++ ..+. ++
T Consensus 70 ~~~~~~~~~~~~~-~i~v~d~~~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~-~~~----~~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 70 QEKVDRALEDAEV-VLFAVDGRAELTQ--ADYEVAEYLRR--KGKPVILVATKVDDP-KHE----LYLGPLY-GLGFGDP 138 (161)
T ss_dssp HHHHHHHTTTCSE-EEEEEESSSCCCH--HHHHHHHHHHH--HTCCEEEEEECCCSG-GGG----GGCGGGG-GGSSCSC
T ss_pred HHHHHHHHHhCCE-EEEEEECCCcccH--hHHHHHHHHHh--cCCCEEEEEECcccc-cch----HhHHHHH-hCCCCCe
Confidence 3445556666655 788889885 322 22333332222 358999999999997 321 2222333 4566 89
Q ss_pred EEecCCCCCCHHHHHHHHHHHH
Q 032001 88 FETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 88 ~~~Sak~~~~i~el~~~l~~~i 109 (149)
+++||++|.|++++|++|++.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998764
No 133
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.12 E-value=8.6e-11 Score=83.91 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=61.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHH---hc--CCCCeEEEEeeCC-CCCcCCCCCCHHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQ---HA--SDNVNKVLVGNKA-DMDESKRAVPTSKGQA 78 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~---~~--~~~~~iilv~nK~-Dl~~~~~~~~~~~~~~ 78 (149)
|-+++|.+|..||.+.+++|++|.+.|.+.++ ....+.++.. .. -.++|++|.+||. |++ ......+...
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp---~Ams~~EI~e 186 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV---KRMPCFYLAH 186 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS---CBCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc---CCCCHHHHHH
Confidence 44689999999999998865555444434333 3333322222 11 1468999999995 776 2233344333
Q ss_pred HHHH----hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 79 LADE----YGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 79 ~~~~----~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.... ..+.+..|||++|+|+.+.++||++.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 2211 2346789999999999999999987663
No 134
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=1.8e-10 Score=88.89 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=71.3
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHH----H
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----A 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~ 80 (149)
..++|++++..+++..+. +++|+|+.+. ...|..++.+.. .+.|+++|+||+|+. + ..........+ +
T Consensus 55 ~~e~f~~~l~~i~~~~~~-il~VvD~~d~----~~~~~~~l~~~~-~~~p~ilV~NK~DL~-~-~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDAL-VVKIVDIFDF----NGSWLPGLHRFV-GNNKVLLVGNKADLI-P-KSVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCE-EEEEEETTSH----HHHCCTTHHHHS-SSSCEEEEEECGGGS-C-TTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcE-EEEEEECCCC----cccHHHHHHHHh-CCCcEEEEEEChhcC-C-cccCHHHHHHHHHHHH
Confidence 467899999988876544 7888899852 256777777655 378999999999997 3 22233333333 4
Q ss_pred HHhCC---cEEEecCCCCCCHHHHHHHHHHHH
Q 032001 81 DEYGI---KFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 81 ~~~~~---~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
+..+. +++.+||++|.|+++++..+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 55676 789999999999999999987643
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=5.6e-11 Score=84.42 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=62.2
Q ss_pred ccccccccchhhhhhc---CeEEEEEeeCC-h-hhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCCcCCCCCC---
Q 032001 5 RCLCFIGVYPPYLAVL---CRFKYCTYKIA-S-YHFSDIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP--- 72 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~vi~v~~~~-~-~s~~~~~~~~~~i~~~----~~~~~~iilv~nK~Dl~~~~~~~~--- 72 (149)
|-++|+.++..|++.. .+++++|+|.+ + .+|.....|+.++... ...++|+++|+||+|+. ....+.
T Consensus 64 G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~ 142 (218)
T 1nrj_B 64 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF-TARPPSKIK 142 (218)
T ss_dssp CCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST-TCCCHHHHH
T ss_pred CcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc-ccCCHHHHH
Confidence 4467888999999872 45578999998 6 7899999998888664 33679999999999997 433322
Q ss_pred ---HHHHHHHHHHhCCcEEEecCCCCCC
Q 032001 73 ---TSKGQALADEYGIKFFETSAKTNLN 97 (149)
Q Consensus 73 ---~~~~~~~~~~~~~~~~~~Sak~~~~ 97 (149)
..+...++...+.+++++||++|.+
T Consensus 143 ~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 143 DALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHhccccccccccccc
Confidence 2334555566667889999998876
No 136
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.99 E-value=2.2e-09 Score=87.43 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=74.3
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhC
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 84 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 84 (149)
-+.|...+..+++.++. +++|+|.++ .++.....|...+. .++|+++|+||+|+. ..+ .......+....+
T Consensus 81 h~dF~~ev~~~l~~aD~-aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~-~a~--~~~v~~ei~~~lg 152 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEG-ALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLP-AAD--PERVAEEIEDIVG 152 (599)
T ss_dssp CGGGHHHHHHHHHHCSE-EEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTST-TCC--HHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHCCE-EEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcc-ccc--HHHHHHHHHHHhC
Confidence 35677778888888766 677778876 66777778876553 368999999999997 322 2333455666666
Q ss_pred C---cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 85 I---KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 85 ~---~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
. +++.+||++|.|++++|+++++.++..
T Consensus 153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 153 IDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 5 489999999999999999999877543
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.96 E-value=4e-10 Score=88.40 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=66.8
Q ss_pred hhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCC
Q 032001 14 PPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 93 (149)
Q Consensus 14 ~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak 93 (149)
..++.+++. +++|+|.... .....|+..+... ++|+++|+||+|+. ..... .....+.+..+.+++++||+
T Consensus 108 ~~~l~~aD~-vllVvD~~~~--~~~~~~l~~l~~~---~~piIvV~NK~Dl~-~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 108 RRVFYRADC-GILVTDSAPT--PYEDDVVNLFKEM---EIPFVVVVNKIDVL-GEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHHTSCSE-EEEECSSSCC--HHHHHHHHHHHHT---TCCEEEECCCCTTT-TCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHHhcCCE-EEEEEeCCCh--HHHHHHHHHHHhc---CCCEEEEEeCcCCC-CccHH--HHHHHHHHHcCCCEEEEECC
Confidence 345666544 7888888432 4457788887763 68999999999997 33322 44555556677899999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 032001 94 TNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 94 ~~~~i~el~~~l~~~i~~~ 112 (149)
+|.|++++|+.|++.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999887543
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.96 E-value=2.3e-09 Score=87.34 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=72.1
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 85 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (149)
+.|...+..+++.++. +++|+|.++ .++.....|...+. .++|+++|+||+|+. ... .......+....+.
T Consensus 84 ~dF~~ev~r~l~~aD~-aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~-~a~--~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEG-ALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLP-SAD--VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSE-EEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTST-TCC--HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCE-EEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcc-ccC--HHHHHHHHHHhhCC
Confidence 4566677778877766 677778887 67777888876543 368999999999997 322 22334445555565
Q ss_pred ---cEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 86 ---KFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 86 ---~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+++++||++|.|++++|+++++.++.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 48999999999999999999987754
No 139
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.96 E-value=1.2e-09 Score=80.53 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=66.4
Q ss_pred cchhhhh-hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEe
Q 032001 12 VYPPYLA-VLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 90 (149)
Q Consensus 12 ~~~~~~~-~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (149)
++..|+. ...+++++|+|.++ +.....|...+... ..+|+++|+||+|+. ..+.... ....+.+..+.+++++
T Consensus 72 ~~~~~~~~~~~d~vi~v~D~~~--~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~-~~~~~~~-~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 72 IARNFILDGNADVIVDIVDSTC--LMRNLFLTLELFEM--EVKNIILVLNKFDLL-KKKGAKI-DIKKMRKELGVPVIPT 145 (271)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHT--TCCSEEEEEECHHHH-HHHTCCC-CHHHHHHHHSSCEEEC
T ss_pred HHHHhhhccCCcEEEEEecCCc--chhhHHHHHHHHhc--CCCCEEEEEEChhcC-cccccHH-HHHHHHHHcCCcEEEE
Confidence 4555553 34566888888885 34445555555543 238999999999986 2222221 2556677889999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 032001 91 SAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 91 Sak~~~~i~el~~~l~~~i~~ 111 (149)
||++|.|++++|..+.+.+..
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987644
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.96 E-value=2e-09 Score=83.73 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=69.7
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh-
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY- 83 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~- 83 (149)
-++|...+..++..++. +++|+|.++ .++.+...|+..+.... ..|+++|+||+|+. +.... ......+....
T Consensus 85 h~~~~~~~~~~~~~~D~-~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~-~~~~~-~~~~~~i~~~l~ 159 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDG-AILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVV-SKEEA-LSQYRQIKQFTK 159 (403)
T ss_dssp CGGGHHHHHHHHTTCSE-EEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGS-CHHHH-HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhhCCE-EEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECcccc-chHHH-HHHHHHHHHHHH
Confidence 35677777777777655 677788887 55778888877766543 25899999999997 32111 11111222221
Q ss_pred -----CCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 84 -----GIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 84 -----~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
+.+++++||++|.|+++|++.|.+.++
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 468999999999999999999998664
No 141
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.94 E-value=1.5e-09 Score=83.77 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=68.4
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHH----
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---- 79 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---- 79 (149)
..++|++++..++.+.+. +++|+|+.+ . ..|..++.+.. .+.|+++|+||+|+. + ..........+
T Consensus 57 ~~e~f~~~L~~~~~~~~l-il~VvD~~d~~-----~s~~~~l~~~l-~~~piilV~NK~DLl-~-~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKAL-VVNIVDIFDFN-----GSFIPGLPRFA-ADNPILLVGNKADLL-P-RSVKYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCE-EEEEEETTCSG-----GGCCSSHHHHC-TTSCEEEEEECGGGS-C-TTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcE-EEEEEECCCCC-----CchhhHHHHHh-CCCCEEEEEEChhcC-C-CccCHHHHHHHHHHH
Confidence 357899999988877655 788889886 3 25666665554 368999999999997 3 22223333333
Q ss_pred HHHhCC---cEEEecCCCCCCHHHHHHHHHHHH
Q 032001 80 ADEYGI---KFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 80 ~~~~~~---~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
....+. .++.+||++|.|++++++.+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 444565 689999999999999999987644
No 142
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.94 E-value=3.6e-10 Score=83.07 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=61.6
Q ss_pred cchhhhh-hcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEE
Q 032001 12 VYPPYLA-VLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 89 (149)
Q Consensus 12 ~~~~~~~-~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (149)
++..|+. ...+++++|+|.++ +++..+. ..+.. .++|+++|+||+|+. ..+.... ....+....+.++++
T Consensus 74 i~~~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l~~---~~~pvilv~NK~Dl~-~~~~~~~-~~~~l~~~lg~~vi~ 145 (256)
T 3iby_A 74 IAAQSVIDLEYDCIINVIDACHLERHLYLT---SQLFE---LGKPVVVALNMMDIA-EHRGISI-DTEKLESLLGCSVIP 145 (256)
T ss_dssp HHHHHHHHSCCSEEEEEEEGGGHHHHHHHH---HHHTT---SCSCEEEEEECHHHH-HHTTCEE-CHHHHHHHHCSCEEE
T ss_pred HHHHHHhhCCCCEEEEEeeCCCchhHHHHH---HHHHH---cCCCEEEEEEChhcC-CcCCcHH-HHHHHHHHcCCCEEE
Confidence 4445551 23466888889986 4444333 33332 368999999999986 2222211 234466778999999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 032001 90 TSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 90 ~Sak~~~~i~el~~~l~~~ 108 (149)
+||++|.|++++|+++.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 143
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.94 E-value=9.7e-10 Score=81.95 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=64.6
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHH---HH-Hh-cCCCCeEEEEeeC-CCCCcCCCCCCHHHHHH
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRN---IE-QH-ASDNVNKVLVGNK-ADMDESKRAVPTSKGQA 78 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~---i~-~~-~~~~~~iilv~nK-~Dl~~~~~~~~~~~~~~ 78 (149)
-+++|.+|..||.+.+++|++| |.++ +.++ ....+.+ +. +. .-.++|++|.+|| .|++ ......+...
T Consensus 197 Q~~lRplWr~Yy~~tdglIfVV-DSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp---~Ams~~EI~e 271 (312)
T 3l2o_B 197 RYSVIPQIQKVCEVVDGFIYVA-NAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV---KRMPCFYLAH 271 (312)
T ss_dssp CCCCCHHHHHHHHHCSEEEECC-BCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS---CBCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEe-cCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc---CCCCHHHHHH
Confidence 3688999999999998855555 5554 4333 2222221 11 11 1147899999996 6886 2233343332
Q ss_pred HHHH----hCCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 79 LADE----YGIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 79 ~~~~----~~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.... ..+.+..+||.+|+|+.+.++||++.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 2211 2345789999999999999999998763
No 144
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.90 E-value=5.9e-10 Score=82.57 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=60.5
Q ss_pred hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q 032001 19 VLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 98 (149)
Q Consensus 19 ~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i 98 (149)
...+++++|+|.++ ++....|...+... ++|+++|+||+|+. ..+... .....+.+..+.+++++||++|.|+
T Consensus 84 ~~~d~ii~VvD~~~--~~~~~~~~~~l~~~---~~p~ivv~NK~Dl~-~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 84 GDADLLINVVDASN--LERNLYLTLQLLEL---GIPCIVALNMLDIA-EKQNIR-IEIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp TCCSEEEEEEEGGG--HHHHHHHHHHHHHH---TCCEEEEEECHHHH-HHTTEE-ECHHHHHHHHTSCEEECCCGGGHHH
T ss_pred cCCCEEEEEecCCC--hHHHHHHHHHHHhc---CCCEEEEEECccch-hhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 45566888889886 23334444444442 58999999999986 222211 1245567778899999999999999
Q ss_pred HHHHHHHHHHHH
Q 032001 99 EQVFFSIARDIK 110 (149)
Q Consensus 99 ~el~~~l~~~i~ 110 (149)
+++|+.+.+.+.
T Consensus 157 ~el~~~i~~~~~ 168 (274)
T 3i8s_A 157 EALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh
Confidence 999999887553
No 145
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.89 E-value=7.6e-09 Score=82.26 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=59.7
Q ss_pred hhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCC
Q 032001 16 YLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~ 94 (149)
++.. .+++++|+|.++ .++.....|..-+.. . .++|+++|+||+|+. ..... ....+......+++++||++
T Consensus 309 ~~~~-aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l-~~~piIvV~NK~Dl~-~~~~~---~~~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 309 KMAE-ADLILYLLDLGTERLDDELTEIRELKAA-H-PAAKFLTVANKLDRA-ANADA---LIRAIADGTGTEVIGISALN 381 (476)
T ss_dssp CCSS-CSEEEEEEETTTCSSGGGHHHHHHHHHH-C-TTSEEEEEEECTTSC-TTTHH---HHHHHHHHHTSCEEECBTTT
T ss_pred hccc-CCEEEEEEECCCCcchhhhHHHHHHHHh-c-CCCCEEEEEECcCCC-Cccch---hHHHHHhcCCCceEEEEECC
Confidence 4444 456888999987 666543333322222 2 268999999999997 33221 11223333346899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 032001 95 NLNVEQVFFSIARDIK 110 (149)
Q Consensus 95 ~~~i~el~~~l~~~i~ 110 (149)
|.|++++|++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999875
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.85 E-value=1.7e-08 Score=80.41 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred hhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecC
Q 032001 14 PPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 92 (149)
Q Consensus 14 ~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 92 (149)
..++..+ +++++|+|.++ .+++... +++.+ .++|+++|+||+|+. . .+.......+.. .+.+++++||
T Consensus 318 ~~~~~~a-D~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~-~--~~~~~~~~~~~~-~~~~~i~iSA 386 (482)
T 1xzp_A 318 LQEIEKA-DIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVV-E--KINEEEIKNKLG-TDRHMVKISA 386 (482)
T ss_dssp HHHHHHC-SEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSC-C--CCCHHHHHHHHT-CSTTEEEEEG
T ss_pred HHHhhcc-cEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccc-c--ccCHHHHHHHhc-CCCcEEEEEC
Confidence 3456665 55888889886 5665543 33333 368999999999997 3 233333333322 3368999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 032001 93 KTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 93 k~~~~i~el~~~l~~~i~~ 111 (149)
++|.|++++|++|.+.+..
T Consensus 387 ktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GGTCCHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999997664
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.85 E-value=1.4e-08 Score=78.27 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=63.4
Q ss_pred cCeEEEEEeeCCh-h--hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCC-HHHHHHHHHHh-C--CcEEEecC
Q 032001 20 LCRFKYCTYKIAS-Y--HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY-G--IKFFETSA 92 (149)
Q Consensus 20 ~~~~vi~v~~~~~-~--s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~--~~~~~~Sa 92 (149)
..+++++|+|.++ . .+.....|...+......++|+++|+||+|+. +..... ...+..++... . .+++++||
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI-NGDLYKKLDLVEKLSKELYSPIFDVIPISA 335 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC-CSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC-CchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 3456888899876 4 56666677766655443578999999999987 322100 01222233444 2 36899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 032001 93 KTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 93 k~~~~i~el~~~l~~~i~~~ 112 (149)
+++.|++++++.|.+.+...
T Consensus 336 ~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhccc
Confidence 99999999999999877654
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.82 E-value=5.3e-08 Score=76.53 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=62.9
Q ss_pred cccccch-hhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHH-HHHHH--
Q 032001 8 CFIGVYP-PYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE-- 82 (149)
Q Consensus 8 ~~~~~~~-~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~-~~~~~-- 82 (149)
.|..++. .+++.+ +++++++|... .++.. ..+...+.. .+.|+++|+||+|+. ..+.....+.. .+...
T Consensus 251 ~~~~~~~~~~i~~a-d~vllv~d~~~~~~~~~-~~i~~~l~~---~~~~~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 251 KYSNYRVVDSIEKA-DVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLV-VHREKRYDEFTKLFREKLY 324 (439)
T ss_dssp CSCCHHHHHHHHHC-SEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGS-TTGGGCHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhC-CEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCC-CchhhHHHHHHHHHHHHhc
Confidence 3433433 345554 55788889876 44443 233333333 468999999999987 33332222222 22222
Q ss_pred --hCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 83 --YGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 --~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+++++||++|.|++++|+.+.+.+.+.
T Consensus 325 ~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 325 FIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 246899999999999999999999876553
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.80 E-value=2e-09 Score=86.71 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=66.9
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHH---H
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---A 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---~ 80 (149)
|-+.|..++..++..++. +++|+|.++ ........| ..+.. .++|+++|+||+|+.+............+ .
T Consensus 61 Ghe~f~~~~~~~~~~aD~-vILVVDa~dg~~~qt~e~l-~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~ 135 (537)
T 3izy_P 61 GHAAFSAMRARGTQVTDI-VILVVAADDGVMKQTVESI-QHAKD---AHVPIVLAINKCDKAEADPEKVKKELLAYDVVC 135 (537)
T ss_dssp SSCCTTTSBBSSSBSBSS-CEEECBSSSCCCHHHHHHH-HHHHT---TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCC
T ss_pred ChHHHHHHHHHHHccCCE-EEEEEECCCCccHHHHHHH-HHHHH---cCCcEEEEEecccccccchHHHHHHHHhhhhhH
Confidence 446789999998887766 678888886 444444433 33333 46899999999999722111111122111 1
Q ss_pred HHh--CCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 81 DEY--GIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 81 ~~~--~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
..+ ..+++++||++|.|++++|+.|...+.
T Consensus 136 e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 136 EDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 111 247899999999999999999997663
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.79 E-value=4.9e-09 Score=82.44 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=62.0
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHH-HHHHHHhCC-
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI- 85 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~- 85 (149)
++..+..++++++. +++|+|... .++.+ .|+..+... .++|+++|+||+|+. .. . .... ..+. ..++
T Consensus 71 ~~~~~~~~~~~ad~-il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~-~~--~-~~~~~~~~~-~lg~~ 140 (439)
T 1mky_A 71 MKEVTLNMIREADL-VLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENL-RE--F-EREVKPELY-SLGFG 140 (439)
T ss_dssp HHHHHHHHHTTCSE-EEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSH-HH--H-HHHTHHHHG-GGSSC
T ss_pred HHHHHHHHHHhCCE-EEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCc-cc--c-HHHHHHHHH-hcCCC
Confidence 45566777777765 777888875 33322 222222221 258999999999986 21 1 1122 2232 3455
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 86 KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 86 ~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+++++||++|.|++++|+.+++.+.+.
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 789999999999999999999988754
No 151
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.79 E-value=1.7e-09 Score=81.28 Aligned_cols=93 Identities=15% Similarity=0.016 Sum_probs=61.5
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHH-HHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH-hC-
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YG- 84 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~-~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~- 84 (149)
|......++++++. +++|+|.++ .+. ...|+ +.+.... .++|+++|+||+|+. .... ........ .+
T Consensus 76 ~~~~~~~~l~~ad~-il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~-~~~~----~~~~~~~~~~~~ 146 (301)
T 1wf3_A 76 MDQEVYEALADVNA-VVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAA-KYPE----EAMKAYHELLPE 146 (301)
T ss_dssp HHHHHHHHTSSCSE-EEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGC-SSHH----HHHHHHHHTSTT
T ss_pred HHHHHHHHHhcCCE-EEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccC-CchH----HHHHHHHHhcCc
Confidence 44555667776654 788889875 333 34555 4444432 468999999999987 2211 02222222 23
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+++++||++|.|++++|+.|.+.++
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 47899999999999999999987664
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.78 E-value=2.9e-08 Score=79.89 Aligned_cols=55 Identities=15% Similarity=-0.051 Sum_probs=39.9
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
-++|...+..+++.++. +++|+|.++ .+......|. .+.. .++|+++|+||+|+.
T Consensus 92 ~~df~~~~~~~l~~aD~-allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDS-ALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRD 147 (528)
T ss_dssp STTCCHHHHHGGGGCSE-EEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSC
T ss_pred chhHHHHHHHHHHhCCE-EEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCc
Confidence 35677788888887766 677778886 5566655553 3443 368999999999986
No 153
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.73 E-value=1.6e-08 Score=80.47 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=63.0
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--CCHHHHHHHHHHh-
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQALADEY- 83 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~- 83 (149)
++|...+..++..++ ++++|+|.++....+...++..+.. .++|+++|+||+|+. +... ....+...++...
T Consensus 84 ~~~~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~Dl~-~~~~~~~~~~~l~~~l~~~~ 158 (482)
T 1wb1_A 84 ADLIRAVVSAADIID-LALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKSDNA-GTEEIKRTEMIMKSILQSTH 158 (482)
T ss_dssp HHHHHHHHHHTTSCC-EEEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECTTSS-CHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhCC-EEEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECCCcc-cchhHHHHHHHHHHHHhhhc
Confidence 345556666666654 4777778875111222223333333 357889999999997 2111 1112233444444
Q ss_pred ---CCcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 84 ---GIKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 84 ---~~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
+.+++++||++|.|++++++.|.+.+.
T Consensus 159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 468999999999999999999999875
No 154
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.72 E-value=1.4e-09 Score=80.85 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=65.6
Q ss_pred cccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH--hC
Q 032001 8 CFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YG 84 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~ 84 (149)
.+..++..|+++.++++++|+|.+. .+......|...+.. .+.|+++|+||+|+. .........+...... .+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---~~~~~i~V~NK~Dl~-~~~~~~~~~~~~~~~~~~~~ 225 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKLDLM-DEGTDARDVLENKLLPLRRG 225 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEECGGGS-CTTCCCHHHHTTCSSCCTTC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---CCCeEEEEEEccccC-CCCchHHHHHhCCcCcCCCC
Confidence 5677888899988887778888875 333333345554432 468999999999997 3222222222110001 12
Q ss_pred -CcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 85 -IKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 85 -~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+++.+||++|.|++++|+.+.+...
T Consensus 226 ~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 226 YIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp EEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred cEEEECCChhhccccccHHHHHHHHHH
Confidence 36788999999999999999987543
No 155
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.69 E-value=3.3e-08 Score=77.02 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=49.2
Q ss_pred CeEEEEEeeCCh-----hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--CCHHHHHHHHHH---hCCcEEEe
Q 032001 21 CRFKYCTYKIAS-----YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQALADE---YGIKFFET 90 (149)
Q Consensus 21 ~~~vi~v~~~~~-----~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 90 (149)
.+++++|+|.++ .+++.+..| ... ...|+++++||+|+. +... ...++...++.. .+.+++++
T Consensus 105 ~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~~i~v 177 (408)
T 1s0u_A 105 MDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLV-DEKQAEENYEQIKEFVKGTIAENAPIIPI 177 (408)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSS-CTTTTTTHHHHHHHHHTTSTTTTCCEEEC
T ss_pred CCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCC-CHHHHHHHHHHHHHHHhhcCCCCCeEEEe
Confidence 366788889873 334333322 222 124799999999997 3222 122344445443 25689999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 032001 91 SAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 91 Sak~~~~i~el~~~l~~~i~ 110 (149)
||++|.|+++|+++|.+.+.
T Consensus 178 SA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 178 SAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp ------CHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999987664
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=3.1e-09 Score=81.74 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=57.2
Q ss_pred ccccccch-------hhhhhcCeEE----------EEEeeCCh--hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCc
Q 032001 7 LCFIGVYP-------PYLAVLCRFK----------YCTYKIAS--YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDE 66 (149)
Q Consensus 7 ~~~~~~~~-------~~~~~~~~~v----------i~v~~~~~--~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~ 66 (149)
++|..++. .||++..+++ +++|++++ .++..++ .|+..+ ..++|+|+|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~- 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTL- 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCC-
Confidence 67888888 8888876542 45555553 4555554 454443 2578999999999987
Q ss_pred CCCCCCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHHh
Q 032001 67 SKRAVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 113 (149)
Q Consensus 67 ~~~~~~~--~~~~~~~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~~ 113 (149)
..+.+.. ..+..++...+++++++||+++.+ ++.|..+.+.+.+..
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 3222222 233444555678999999999999 888888888886654
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.68 E-value=2.1e-07 Score=75.84 Aligned_cols=102 Identities=14% Similarity=0.002 Sum_probs=64.1
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCC------------C
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV------------P 72 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~------------~ 72 (149)
-+.|..++..+++.++. +++|+|.++ -.......|. .+.. .++|+++++||+|+....... .
T Consensus 80 he~F~~~~~r~~~~aD~-aILVvDa~~Gv~~qT~e~l~-~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 80 HEAFTTLRKRGGALADL-AILIVDINEGFKPQTQEALN-ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TSCCTTSBCSSSBSCSE-EEEEEETTTCCCHHHHHHHH-HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred cHHHHHHHHHHHhhCCE-EEEEEECCCCccHhHHHHHH-HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 46788888888776655 777788875 2122223332 2333 468999999999986211100 0
Q ss_pred HH----------HHHHHHHHhC---------------CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 73 TS----------KGQALADEYG---------------IKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 73 ~~----------~~~~~~~~~~---------------~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.. +........+ .+++.+||++|.|+++|+++|...++..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 0011111112 3799999999999999999999877654
No 158
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.67 E-value=1.2e-07 Score=74.22 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=69.5
Q ss_pred cccchhhhhh--cCeEEEEEeeCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC
Q 032001 10 IGVYPPYLAV--LCRFKYCTYKIASYHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 85 (149)
Q Consensus 10 ~~~~~~~~~~--~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (149)
..+...+++. ..+.+++++|+++.++..+..|..++..... ...|.++|+||+|+. .. .....+.......+.
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~-~~--~~~~~l~~~l~~~g~ 299 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL-EE--EAVKALADALAREGL 299 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS-CH--HHHHHHHHHHHTTTS
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh-hH--HHHHHHHHHHHhcCC
Confidence 3444444443 2456788889864467777888777765431 257889999999987 21 112233334444567
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 86 KFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 86 ~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
+++.+||+++.|+++++++|.+.+.+.
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988654
No 159
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.65 E-value=2.1e-08 Score=78.80 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=62.3
Q ss_pred cccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC-
Q 032001 8 CFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 85 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 85 (149)
+++..+..++.+++. +++|+|..+ .++.+ .|+.++... .++|+++|+||+|+. ..... ...+. ..++
T Consensus 71 ~~~~~~~~~~~~ad~-il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~-~~~~~----~~~~~-~lg~~ 139 (436)
T 2hjg_A 71 QIRQQAEIAMDEADV-IIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNT-EMRAN----IYDFY-SLGFG 139 (436)
T ss_dssp HHHHHHHHHHHHCSE-EEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC------C----CCSSG-GGSSC
T ss_pred HHHHHHHHHHHhCCE-EEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCc-cchhh----HHHHH-HcCCC
Confidence 566777788888765 777888875 44433 344443332 468999999999986 22110 11111 2344
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 86 KFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 86 ~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+++.+||++|.|+.++++++.+.+.+
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 78999999999999999999987754
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.65 E-value=1.9e-08 Score=78.25 Aligned_cols=98 Identities=19% Similarity=0.117 Sum_probs=64.3
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCCCC---CHHHHHHHHHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV---PTSKGQALADE 82 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 82 (149)
++|...+..+++.++. +++|+|.++..+.....|+..+.. .++| +++++||+|+. ..... ...+...++..
T Consensus 86 ~~f~~~~~~~~~~aD~-~ilVvda~~g~~~qt~~~l~~~~~---~~ip~iivviNK~Dl~-~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 86 ADYIKNMITGAAQMDG-AILVVSAADGPMPQTREHILLARQ---VGVPYIVVFMNKVDMV-DDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp GGGHHHHHHHHTTCSS-EEEEEETTTCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCE-EEEEEECCCCCcHHHHHHHHHHHH---cCCCEEEEEEECcccc-CcHHHHHHHHHHHHHHHHH
Confidence 4666777777776665 677778876334455666666655 3577 89999999997 31111 11233445555
Q ss_pred hC-----CcEEEecCCCCCC------------------HHHHHHHHHHHH
Q 032001 83 YG-----IKFFETSAKTNLN------------------VEQVFFSIARDI 109 (149)
Q Consensus 83 ~~-----~~~~~~Sak~~~~------------------i~el~~~l~~~i 109 (149)
.+ .+++++||++|.| +.+|++.|.+.+
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred hcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 54 5899999999987 666666666544
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.64 E-value=4.5e-08 Score=77.57 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=56.1
Q ss_pred cCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q 032001 20 LCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 98 (149)
Q Consensus 20 ~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i 98 (149)
..+++++|+|.++ .++.. ..|+..+. ..|+++|+||+|+. ...... ....+. .+.+++++||++|.|+
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~-~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLV-EKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSS-CGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCC-cchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 3466888899986 44433 55655552 36999999999997 322221 110111 3468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 032001 99 EQVFFSIARDIKQ 111 (149)
Q Consensus 99 ~el~~~l~~~i~~ 111 (149)
+++++.|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987744
No 162
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.64 E-value=1.4e-08 Score=76.12 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=61.5
Q ss_pred cccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC-cEE
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFF 88 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (149)
......++..+ +++++|+|.++ +.....|+.+.... .+.|+++++||+|+. ..+.........+.+..+. .++
T Consensus 79 ~~~~~~~l~~~-D~vl~Vvd~~~--~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~-~~~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 79 NKAASSSIGDV-ELVIFVVEGTR--WTPDDEMVLNKLRE--GKAPVILAVNKVDNV-QEKADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp TCCTTSCCCCE-EEEEEEEETTC--CCHHHHHHHHHHHS--SSSCEEEEEESTTTC-CCHHHHHHHHHHHHTTSCCSEEE
T ss_pred HHHHHHHHhcC-CEEEEEEeCCC--CCHHHHHHHHHHHh--cCCCEEEEEECcccC-ccHHHHHHHHHHHHHhcCcCceE
Confidence 33444555555 55778788865 44444555443332 468999999999987 2111112233344444565 689
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q 032001 89 ETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 89 ~~Sak~~~~i~el~~~l~~~i~ 110 (149)
++||++|.|++++++.+.+.++
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999987654
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.59 E-value=7.9e-08 Score=74.12 Aligned_cols=99 Identities=7% Similarity=-0.033 Sum_probs=64.8
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeE-EEEee-CCCCCcCCCCCCH--HHHHHHHHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKRAVPT--SKGQALADE 82 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~i-ilv~n-K~Dl~~~~~~~~~--~~~~~~~~~ 82 (149)
++|...+..+++.++. +++|+| +...+.+...|+..+... ++|. ++++| |+|+. . ..... .+...++..
T Consensus 71 ~~f~~~~~~~~~~aD~-ailVvd-~~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl~-~-~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 71 PKTLKSLITALNISDI-AVLCIP-PQGLDAHTGECIIALDLL---GFKHGIIALTRSDSTH-M-HAIDELKAKLKVITSG 143 (370)
T ss_dssp TTCHHHHHHHHHTCSE-EEEEEC-TTCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGSC-H-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCE-EEEEEc-CCCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCCC-H-HHHHHHHHHHHHHHHh
Confidence 4565566666665655 677778 654456667777666553 4666 88888 99982 2 11111 223333333
Q ss_pred h---CCcEEE--ecCCC---CCCHHHHHHHHHHHHHHH
Q 032001 83 Y---GIKFFE--TSAKT---NLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 83 ~---~~~~~~--~Sak~---~~~i~el~~~l~~~i~~~ 112 (149)
. ..++++ +||++ +.|++++++.|.+.+...
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 2 268999 99999 999999999999887643
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.57 E-value=8e-08 Score=75.41 Aligned_cols=94 Identities=12% Similarity=-0.089 Sum_probs=60.5
Q ss_pred cccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCC----CHHHHHHHHH
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV----PTSKGQALAD 81 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~ 81 (149)
-++|...+..++..++. +++|+|.++..+.....|+..+.... -.|+|+|+||+|+. +.... ...+...+++
T Consensus 114 h~~f~~~~~~~~~~aD~-~ilVvDa~~g~~~qt~~~l~~~~~~~--~~~iIvviNK~Dl~-~~~~~~~~~i~~~~~~~~~ 189 (434)
T 1zun_B 114 HEQYTRNMATGASTCDL-AIILVDARYGVQTQTRRHSYIASLLG--IKHIVVAINKMDLN-GFDERVFESIKADYLKFAE 189 (434)
T ss_dssp SGGGHHHHHHHHTTCSE-EEEEEETTTCSCHHHHHHHHHHHHTT--CCEEEEEEECTTTT-TSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCE-EEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEcCcCC-cccHHHHHHHHHHHHHHHH
Confidence 45677777777766655 78888988632344455555544421 23699999999997 32111 1123344555
Q ss_pred HhC-----CcEEEecCCCCCCHHHHHH
Q 032001 82 EYG-----IKFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 82 ~~~-----~~~~~~Sak~~~~i~el~~ 103 (149)
..+ .+++++||++|.|+.+++.
T Consensus 190 ~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 190 GIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HhCCCccCceEEEEeccCCCCcccccc
Confidence 566 5799999999999988543
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.56 E-value=7.3e-08 Score=75.09 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=53.2
Q ss_pred CeEEEEEeeCCh-----hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--CCHHHHHHHHHH---hCCcEEEe
Q 032001 21 CRFKYCTYKIAS-----YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQALADE---YGIKFFET 90 (149)
Q Consensus 21 ~~~vi~v~~~~~-----~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 90 (149)
.+++++|+|.++ .+++.+..| .... ..|+++|+||+|+. .... ...++...++.. .+.+++++
T Consensus 107 ~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~--~~~iivviNK~Dl~-~~~~~~~~~~~i~~~l~~~~~~~~~~i~v 179 (410)
T 1kk1_A 107 MDGAILVIAANEPCPRPQTREHLMAL----QIIG--QKNIIIAQNKIELV-DKEKALENYRQIKEFIEGTVAENAPIIPI 179 (410)
T ss_dssp CSEEEEEEETTSCSSCHHHHHHHHHH----HHHT--CCCEEEEEECGGGS-CHHHHHHHHHHHHHHHTTSTTTTCCEEEC
T ss_pred CCEEEEEEECCCCCCChhHHHHHHHH----HHcC--CCcEEEEEECccCC-CHHHHHHHHHHHHHHHHhcCcCCCeEEEe
Confidence 356788888874 333333322 2221 35799999999997 3211 111222333332 35689999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 032001 91 SAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 91 Sak~~~~i~el~~~l~~~i~ 110 (149)
||++|.|+++|++.|.+.++
T Consensus 180 SA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 180 SALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999987664
No 166
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.56 E-value=6e-07 Score=62.06 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=49.6
Q ss_pred ccccccccchhhhhhc---CeEEEEEeeCC-h-hhHHHHHHHHHHHHHh----cCCCCeEEEEeeCCCCC
Q 032001 5 RCLCFIGVYPPYLAVL---CRFKYCTYKIA-S-YHFSDIRNWIRNIEQH----ASDNVNKVLVGNKADMD 65 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~vi~v~~~~-~-~s~~~~~~~~~~i~~~----~~~~~~iilv~nK~Dl~ 65 (149)
|.+.|+..+..|+... .+++++|+|++ + .+|.....|+..+... ...++|+++|+||+|+.
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 4567888999999873 56689999998 6 8899998998887653 23579999999999997
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.56 E-value=1.1e-08 Score=81.79 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=60.8
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCC-CCCCHH--HHHHHH
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTS--KGQALA 80 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~-~~~~~~--~~~~~~ 80 (149)
|-+.|..++..++..++. +++|+|.++ ........| ..+.. .++|+++++||+|+.... ..+... ....+.
T Consensus 60 Ghe~f~~~~~~~~~~aD~-aILVVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~ 134 (501)
T 1zo1_I 60 GHAAFTSMRARGAQATDI-VVLVVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILP 134 (501)
T ss_dssp TTTCCTTSBCSSSBSCSS-EEEEEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCT
T ss_pred CcHHHHHHHHHHHhhCCE-EEEEeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhH
Confidence 346788888887776665 677778875 222222233 33333 468999999999997211 111100 000011
Q ss_pred HHhC--CcEEEecCCCCCCHHHHHHHHHH
Q 032001 81 DEYG--IKFFETSAKTNLNVEQVFFSIAR 107 (149)
Q Consensus 81 ~~~~--~~~~~~Sak~~~~i~el~~~l~~ 107 (149)
..++ .+++++||++|.|++++|++|..
T Consensus 135 ~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 135 EEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1222 68999999999999999999874
No 168
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.55 E-value=1.6e-07 Score=74.63 Aligned_cols=92 Identities=10% Similarity=-0.114 Sum_probs=54.0
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHH-----HHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHH----
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSD-----IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK---- 75 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~-----~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~---- 75 (149)
-++|...+..+++.++. +++|+|.++ .++.. ...+...+.... ...|+|+|+||+|+. +.+....++
T Consensus 121 ~~~f~~~~~~~~~~aD~-~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~-~~~~~~~~~i~~~ 197 (483)
T 3p26_A 121 HRDFVPNAIMGISQADM-AILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNV-DWSQQRFEEIKSK 197 (483)
T ss_dssp CGGGHHHHHHHHTTCSE-EEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGG-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhCCE-EEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcc-cchHHHHHHHHHH
Confidence 36778888888888765 677778886 33321 112222222222 224699999999997 322222222
Q ss_pred HHHHHHHh-----CCcEEEecCCCCCCHHH
Q 032001 76 GQALADEY-----GIKFFETSAKTNLNVEQ 100 (149)
Q Consensus 76 ~~~~~~~~-----~~~~~~~Sak~~~~i~e 100 (149)
+..+.... +.+++++||++|.|+++
T Consensus 198 ~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 198 LLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22233333 35789999999999874
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.55 E-value=1.3e-08 Score=80.05 Aligned_cols=96 Identities=10% Similarity=0.050 Sum_probs=61.1
Q ss_pred cccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhc----CCCC-eEEEEeeCCCCCcCC--CC----CCHH
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHA----SDNV-NKVLVGNKADMDESK--RA----VPTS 74 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~----~~~~-~iilv~nK~Dl~~~~--~~----~~~~ 74 (149)
-++|...+..+++.++. +++|+|.++.+|+....|....+.+. ..++ ++|+++||+|+. .. .. ....
T Consensus 94 ~~~f~~~~~~~~~~aD~-~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~-~~~~~~~~~~~~~~ 171 (435)
T 1jny_A 94 HRDFVKNMITGASQADA-AILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT-EPPYDEKRYKEIVD 171 (435)
T ss_dssp STTHHHHHHHTSSCCSE-EEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS-SSTTCHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhcCE-EEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC-CccccHHHHHHHHH
Confidence 35677777777766655 77888888777875544433332211 0233 689999999997 31 11 1123
Q ss_pred HHHHHHHHhC-----CcEEEecCCCCCCHHHHHH
Q 032001 75 KGQALADEYG-----IKFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 75 ~~~~~~~~~~-----~~~~~~Sak~~~~i~el~~ 103 (149)
+...++...+ .+++++||++|.|+.+++.
T Consensus 172 ~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 172 QVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 3445555555 5799999999999986543
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.53 E-value=4.9e-08 Score=75.83 Aligned_cols=98 Identities=17% Similarity=0.032 Sum_probs=62.4
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCCCC---CHHHHHHHHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV---PTSKGQALAD 81 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 81 (149)
++|...+..+++.++ ++++|+|.++ ........| ..+.. .++| +++++||+|+. +.... ...+...++.
T Consensus 77 ~~f~~~~~~~~~~aD-~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~-~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 77 ADYVKNMITGTAPLD-GCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAV-QDSEMVELVELEIRELLT 150 (397)
T ss_dssp HHHHHHHHHTSSCCS-EEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhCC-EEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccC-CCHHHHHHHHHHHHHHHH
Confidence 345566666666554 5788889886 433333444 44443 3577 78999999987 31111 1123444555
Q ss_pred HhC-----CcEEEecCCCCCC----------HHHHHHHHHHHHH
Q 032001 82 EYG-----IKFFETSAKTNLN----------VEQVFFSIARDIK 110 (149)
Q Consensus 82 ~~~-----~~~~~~Sak~~~~----------i~el~~~l~~~i~ 110 (149)
..+ .+++++||++|.| +.+|++.|.+.++
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 555 5899999999765 7888888877654
No 171
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.49 E-value=3.3e-07 Score=72.09 Aligned_cols=93 Identities=15% Similarity=0.047 Sum_probs=56.2
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hh---HH---HHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCC--CC----
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YH---FS---DIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AV---- 71 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s---~~---~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~--~~---- 71 (149)
-++|...+..+++.++. +++|+|.++ .. |+ +....+..+.. .++| +|+|+||+|+. ... ..
T Consensus 105 h~~f~~~~~~~~~~aD~-~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~-~~~~~~~~~~~ 179 (439)
T 3j2k_7 105 HKSFVPNMIGGASQADL-AVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP-TVNWSNERYEE 179 (439)
T ss_pred hHHHHHHHHhhHhhCCE-EEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc-ccchHHHHHHH
Confidence 35677777788777655 677778875 21 11 22222222222 3466 99999999985 211 10
Q ss_pred CHHHHHHHHHHhC------CcEEEecCCCCCCHHHHHH
Q 032001 72 PTSKGQALADEYG------IKFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 72 ~~~~~~~~~~~~~------~~~~~~Sak~~~~i~el~~ 103 (149)
...+...++...+ .+++++||++|.|+.++++
T Consensus 180 i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 180 CKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1122333444433 4699999999999999765
No 172
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.47 E-value=2.8e-07 Score=65.31 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=55.8
Q ss_pred hhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh--CCcEEEecC
Q 032001 16 YLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSA 92 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 92 (149)
++....+.+++|+|... .. ....+... . +.|+++|+||+|+. ................. +.+++.+||
T Consensus 125 ~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-~-----~~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 195 (221)
T 2wsm_A 125 DFDLGENYRVVMVSVTEGDD--VVEKHPEI-F-----RVADLIVINKVALA-EAVGADVEKMKADAKLINPRAKIIEMDL 195 (221)
T ss_dssp GCCCSCSEEEEEEEGGGCTT--HHHHCHHH-H-----HTCSEEEEECGGGH-HHHTCCHHHHHHHHHHHCTTSEEEECBT
T ss_pred hhccccCcEEEEEeCCCcch--hhhhhhhh-h-----hcCCEEEEecccCC-cchhhHHHHHHHHHHHhCCCCeEEEeec
Confidence 43334556778888875 21 11112111 1 36889999999986 22223344444555543 368999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 032001 93 KTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 93 k~~~~i~el~~~l~~~i~~ 111 (149)
++|.|++++|++|.+.+..
T Consensus 196 ~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 196 KTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TTTBTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987744
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.45 E-value=3.5e-08 Score=78.21 Aligned_cols=95 Identities=16% Similarity=0.015 Sum_probs=49.7
Q ss_pred cccccccchhhhhhcCeEEEEEeeCChh----hHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCC--C----CCHH
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIASY----HFSDIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--A----VPTS 74 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~~----s~~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~--~----~~~~ 74 (149)
-++|...+..++...+. +++|+|.++. +|+....|.+.+......++| +|+++||+|+. ... . ....
T Consensus 131 h~~f~~~~~~~~~~aD~-~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~-~~~~~~~~~~~i~~ 208 (467)
T 1r5b_A 131 HKGYVTNMINGASQADI-GVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP-SVQWSEERYKECVD 208 (467)
T ss_dssp -----------TTSCSE-EEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST-TCSSCHHHHHHHHH
T ss_pred cHHHHHHHHhhcccCCE-EEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC-CccccHHHHHHHHH
Confidence 35677777777766655 6777788752 333222333332221113576 99999999996 211 0 0112
Q ss_pred HHHHHHHHh-------CCcEEEecCCCCCCHHHHH
Q 032001 75 KGQALADEY-------GIKFFETSAKTNLNVEQVF 102 (149)
Q Consensus 75 ~~~~~~~~~-------~~~~~~~Sak~~~~i~el~ 102 (149)
+...++... +++++++||++|.|+.+++
T Consensus 209 e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 209 KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 344455554 3569999999999998765
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.44 E-value=6.2e-07 Score=73.94 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=39.0
Q ss_pred ccccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 5 RCLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
|-++|...+..+++.++. +++|+|.++ .. .....|+..+.. .++|+++|+||+|+.
T Consensus 83 G~~~f~~~~~~~l~~ad~-~ilVvD~~~g~~-~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADA-ALVAVSAEAGVQ-VGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSGGGHHHHHHHHHHCSE-EEEEEETTTCSC-HHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred CccchHHHHHHHHhhcCc-EEEEEcCCcccc-hhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 345677788888887766 566778775 33 334455555554 368999999999974
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.42 E-value=1.1e-07 Score=75.16 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=59.3
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCC-
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 85 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 85 (149)
++++..+..++.+++. +++|+|... .+.....|+.++... .++|+++|+||+|+. ... .....+. ..+.
T Consensus 90 ~~~~~~~~~~~~~ad~-il~VvD~~~-~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~-~~~----~~~~e~~-~lg~~ 159 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADV-IIFMVNGRE-GVTAADEEVAKILYR--TKKPVVLAVNKLDNT-EMR----ANIYDFY-SLGFG 159 (456)
T ss_dssp HHHHHHHHHHHHHCSE-EEEEEESSS-CSCHHHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSS
T ss_pred HHHHHHHHhhHhhCCE-EEEEEeCCC-CCChHHHHHHHHHHH--cCCCEEEEEECccch-hhh----hhHHHHH-HcCCC
Confidence 4567778888888765 677777664 233344455544432 478999999999986 211 1111111 1232
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 86 KFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 86 ~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..+.+||++|.|+.++++.+.+.+..
T Consensus 160 ~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 160 EPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred ceEEeecccccchHHHHHHHHhhccc
Confidence 56899999999999999999876643
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.41 E-value=7.5e-08 Score=72.24 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=57.0
Q ss_pred ccccccch-------hhhhhcCeEE----------EEEeeCCh--hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcC
Q 032001 7 LCFIGVYP-------PYLAVLCRFK----------YCTYKIAS--YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDES 67 (149)
Q Consensus 7 ~~~~~~~~-------~~~~~~~~~v----------i~v~~~~~--~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~ 67 (149)
++|+.+.. .|++...++. +++|.+++ .+++.... +.++... .++++++|+||.|+. .
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~-~ 169 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAIH-NKVNIVPVIAKADTL-T 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHHT-TTSCEEEEECCGGGS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCC-C
Confidence 56677766 7777765421 23334443 23555541 2233322 467999999999986 3
Q ss_pred CCCC--CHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 68 KRAV--PTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 68 ~~~~--~~~~~~~~~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+.+ ...++..++..++++++++||+++ +++++|..+++.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2221 224556677888999999999999 9999999999988654
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.41 E-value=1.4e-07 Score=81.58 Aligned_cols=99 Identities=14% Similarity=0.037 Sum_probs=63.2
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCCCC---CHHHHHHHHHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV---PTSKGQALADE 82 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 82 (149)
++|...+..++..++. +|+|+|.++..+.+...|+..+... ++| +|+++||+|+. +.... ...+...++..
T Consensus 370 edF~~~mi~gas~AD~-aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVINKiDLv-~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDG-AILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCDMV-DDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHHHHHHHHTSCCCSE-EEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEEECCTTC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCE-EEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEEeecccc-cchhhHHHHHHHHHHHHHh
Confidence 3455566666665554 7788898862234455555555543 477 78999999997 31111 11234455555
Q ss_pred hC-----CcEEEecCCCC--------CCHHHHHHHHHHHHH
Q 032001 83 YG-----IKFFETSAKTN--------LNVEQVFFSIARDIK 110 (149)
Q Consensus 83 ~~-----~~~~~~Sak~~--------~~i~el~~~l~~~i~ 110 (149)
.+ ++++++||++| .|+.++++.|.+.++
T Consensus 445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 54 58999999999 457788887776553
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.37 E-value=4.9e-07 Score=71.49 Aligned_cols=90 Identities=13% Similarity=-0.024 Sum_probs=55.3
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHH-------HHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCCCC----CHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFS-------DIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV----PTS 74 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~-------~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~~~----~~~ 74 (149)
++|...+..++..++. +++|+|.++..+. +...++..+.. .++| +|+|+||+|+. +.... ...
T Consensus 96 ~~f~~~~~~~~~~aD~-~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~-~~~~~~~~~i~~ 170 (458)
T 1f60_A 96 RDFIKNMITGTSQADC-AILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV-KWDESRFQEIVK 170 (458)
T ss_dssp TTHHHHHHHSSSCCSE-EEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG-TTCHHHHHHHHH
T ss_pred HHHHHHHHhhhhhCCE-EEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc-cCCHHHHHHHHH
Confidence 4566667777766655 7788898862222 33333333333 2454 99999999997 21111 112
Q ss_pred HHHHHHHHhC-----CcEEEecCCCCCCHHHH
Q 032001 75 KGQALADEYG-----IKFFETSAKTNLNVEQV 101 (149)
Q Consensus 75 ~~~~~~~~~~-----~~~~~~Sak~~~~i~el 101 (149)
+...++...+ .+++++||++|.|+.++
T Consensus 171 ~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 171 ETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3344555554 58999999999998754
No 179
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.31 E-value=1.2e-06 Score=65.21 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=56.8
Q ss_pred hhhhhcCeEEEEEeeCCh-hhHH--HHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHH---HHhCCcEE
Q 032001 15 PYLAVLCRFKYCTYKIAS-YHFS--DIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA---DEYGIKFF 88 (149)
Q Consensus 15 ~~~~~~~~~vi~v~~~~~-~s~~--~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~ 88 (149)
.++..+ +++++|+|..+ .+.. .+..|+ .++|.++|+||+|+. + ......|. +..+.+++
T Consensus 19 ~~l~~a-DvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~-~-----~~~~~~~~~~~~~~g~~~i 83 (282)
T 1puj_A 19 EKLKLI-DIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKA-D-----AAVTQQWKEHFENQGIRSL 83 (282)
T ss_dssp HHGGGC-SEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGS-C-----HHHHHHHHHHHHTTTCCEE
T ss_pred HHHhhC-CEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccC-C-----HHHHHHHHHHHHhcCCcEE
Confidence 344555 55777778875 3332 334443 368999999999997 2 12223333 33467899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHH
Q 032001 89 ETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 89 ~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.+||+++.|+++++..+.+.+.+.
T Consensus 84 ~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 84 SINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHHHHHHHH
Confidence 999999999999999988877643
No 180
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.31 E-value=6.7e-07 Score=63.52 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=44.1
Q ss_pred CeEEEEeeCCCCCcCCCCCCHHHHHHHHHHh--CCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 53 VNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 53 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.|.++|+||+|+. ............++... +.+++++||++|.|++++|+.+.+.+..
T Consensus 165 ~~~iiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLA-DAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGH-HHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccC-chhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5679999999986 32223445555555554 4689999999999999999999987743
No 181
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.30 E-value=5.8e-07 Score=65.45 Aligned_cols=93 Identities=9% Similarity=0.076 Sum_probs=53.7
Q ss_pred hhhhcCeEEEEEeeCCh-hhH-HHHHHHHHHHHHhcCCCCeEEEEee-CCCCCcCCCCCCH-------HHHHHHHHHhCC
Q 032001 16 YLAVLCRFKYCTYKIAS-YHF-SDIRNWIRNIEQHASDNVNKVLVGN-KADMDESKRAVPT-------SKGQALADEYGI 85 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~-~s~-~~~~~~~~~i~~~~~~~~~iilv~n-K~Dl~~~~~~~~~-------~~~~~~~~~~~~ 85 (149)
++++. +++++|+|++. ... .....|+.++.... ...|.++|.| |+|+. .. .... ..+..+....+.
T Consensus 102 ~~~~~-d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~-~~-~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 102 SAPGP-HVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLN-GG-SLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HTTCC-SEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGT-TC-CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred cCCCC-cEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccC-Cc-cHHHHHHhcchHHHHHHHHHhCC
Confidence 44444 55788889885 221 22223433332111 1245555555 99997 32 2111 123335555543
Q ss_pred c---E--EEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 86 K---F--FETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 86 ~---~--~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
. + +.+||++|.|++++|..|.+.+...
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 2 2 7899999999999999999988654
No 182
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.5e-07 Score=73.63 Aligned_cols=93 Identities=13% Similarity=-0.042 Sum_probs=54.4
Q ss_pred ccccccchhhhhhcCeEEEEEeeCChhhHH----HHHHHHHHHHHhcCCC-CeEEEEeeCCCCCcCCCCCCHH----HHH
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIASYHFS----DIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTS----KGQ 77 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~~s~~----~~~~~~~~i~~~~~~~-~~iilv~nK~Dl~~~~~~~~~~----~~~ 77 (149)
++|...+..+++.++. +++|+|.++..|. ....+...+......+ .|+|+|+||+|+. ........ ...
T Consensus 256 e~f~~~~~~~~~~aD~-~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~-~~~~~~~~ei~~~l~ 333 (611)
T 3izq_1 256 RDFVPNAIMGISQADM-AILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV-DWSQQRFEEIKSKLL 333 (611)
T ss_dssp SCHHHHHTTTSSCCSE-EEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT-TTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhcCc-eEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc-chhHHHHHHHHHHHH
Confidence 5667777777777655 7888898852232 1112222221111123 4599999999997 32221111 223
Q ss_pred HHHHHhC-----CcEEEecCCCCCCHHHH
Q 032001 78 ALADEYG-----IKFFETSAKTNLNVEQV 101 (149)
Q Consensus 78 ~~~~~~~-----~~~~~~Sak~~~~i~el 101 (149)
.+....+ .+++++||++|.|+.++
T Consensus 334 ~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 334 PYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHhhcccccCccEEeeecccCCCcccc
Confidence 3333333 58999999999999876
No 183
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.27 E-value=1.8e-07 Score=68.97 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCH--HHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 39 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 39 ~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
..|+..+.. ++|+|+|+||+|+. ....... ..........+++++.+||+++.++++++.+|.+.++-
T Consensus 135 ~~~l~~l~~----~~pvi~V~nK~D~~-~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 135 IEFMKRLHE----KVNIIPLIAKADTL-TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHTT----TSCEEEEESSGGGS-CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHhc----cCCEEEEEeccCCC-CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 345554433 68999999999986 2111111 12233445668889999999999999999998876643
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.25 E-value=3.3e-06 Score=69.94 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
..|...+..+++.++. +++|+|.++ .++.....|.. +.. .++|+++|+||+|+.
T Consensus 88 ~df~~~~~~~l~~aD~-~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 88 VDFTIEVERSMRVLDG-AIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKT 142 (691)
T ss_dssp TTCHHHHHHHHHHCSE-EEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTST
T ss_pred cchHHHHHHHHHHCCE-EEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcc
Confidence 4577778888888766 677778886 66777767754 333 368999999999986
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.24 E-value=1.9e-06 Score=62.05 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=58.9
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCcCCCCCC------HHHHHHH
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVP------TSKGQAL 79 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~~~~~~~------~~~~~~~ 79 (149)
+...+..++.+. +++++|+|+++ .. ....|+..+....+ ...|+++|+||+|+. ....+. ...+..+
T Consensus 102 ~~~~~~~~~~~~-~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 102 IIRCILLTSPGP-HALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDL-GDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHTTTCC-SEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------CHHHHHH
T ss_pred HHHHHHhcCCCC-cEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccC-CcccHHHHHHhchHHHHHH
Confidence 333444444444 55788889875 22 12233333332111 235999999999986 333222 1345667
Q ss_pred HHHhCCcEEEecCCCC-----CCHHHHHHHHHHHHHHH
Q 032001 80 ADEYGIKFFETSAKTN-----LNVEQVFFSIARDIKQR 112 (149)
Q Consensus 80 ~~~~~~~~~~~Sak~~-----~~i~el~~~l~~~i~~~ 112 (149)
.+..+..++.+++..+ .++.++|..+.+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7788887887777644 68899999888877543
No 186
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.22 E-value=5.6e-06 Score=60.14 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=57.0
Q ss_pred hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcC---CCCeEEEEeeCCCCCcCCCCC------CHHHHHHHHHHhCCcEEE
Q 032001 19 VLCRFKYCTYKIASYHFSDIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAV------PTSKGQALADEYGIKFFE 89 (149)
Q Consensus 19 ~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~---~~~~iilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~ 89 (149)
...+++++|+|+++.+ .....+++.+....+ .+.|+|+++||.|+. ..... ....+..+.+..+.+++.
T Consensus 104 ~~~d~il~V~d~~~~~-~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~l~~~~~~~l~~l~~~~g~~~~~ 181 (247)
T 3lxw_A 104 PGPHALLLVTQLGRFT-AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA-GGSLHDYVSNTENRALRELVAECGGRVCA 181 (247)
T ss_dssp TCCSEEEEEEETTBCC-HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT-TCCHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEEeCCCCC-HHHHHHHHHHHHHhChhhhccEEEEEEchHhcC-CCCHHHHHhhcccHHHHHHHHHcCCeEEE
Confidence 4456688888988511 112233333333222 268999999999997 32110 012345666777777776
Q ss_pred ecCCC-----CCCHHHHHHHHHHHHHHH
Q 032001 90 TSAKT-----NLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 90 ~Sak~-----~~~i~el~~~l~~~i~~~ 112 (149)
+++.. +.++.+|+..+.+.+.+.
T Consensus 182 ~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 182 FDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66554 578999999999888654
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.16 E-value=1e-05 Score=65.09 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=36.2
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
+.|...+..+++.++. +++|+|.++ .. .....++..+.. .++|+++++||+|+.
T Consensus 93 ~df~~~~~~~l~~aD~-~IlVvDa~~g~~-~~t~~~~~~~~~---~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDC-CLMVIDAAKGVE-DRTRKLMEVTRL---RDTPILTFMNKLDRD 147 (529)
T ss_dssp TTCCHHHHHGGGGCSE-EEEEEETTTCSC-HHHHHHHHHHTT---TTCCEEEEEECTTSC
T ss_pred hhHHHHHHHHHHHCCE-EEEEEeCCccch-HHHHHHHHHHHH---cCCCEEEEEcCcCCc
Confidence 4677777888877766 677778875 32 223333333332 468999999999986
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.15 E-value=9.6e-07 Score=67.55 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=51.6
Q ss_pred hcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH---h-------CCcE
Q 032001 19 VLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---Y-------GIKF 87 (149)
Q Consensus 19 ~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---~-------~~~~ 87 (149)
...+++++|+|... ..+..+.. .+ ...|.++|+||+|+. ..... ......+... . +.++
T Consensus 191 ~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~-~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~v 260 (355)
T 3p32_A 191 NMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGE-HHKEA-RLAARELSAAIRLIYPREALWRPPV 260 (355)
T ss_dssp TTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGG-GHHHH-HHHHHHHHHHHHHHSTTCCSCCCCE
T ss_pred HhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCc-ChhHH-HHHHHHHHHHHhhccccccCCCCce
Confidence 34566778878764 32222111 11 236889999999986 21111 1111122221 1 4689
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Q 032001 88 FETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 88 ~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+||++|.|+++++++|.+.+..
T Consensus 261 i~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 261 LTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.14 E-value=2.7e-06 Score=70.55 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=62.7
Q ss_pred ccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHH----------HHHH-
Q 032001 11 GVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS----------KGQA- 78 (149)
Q Consensus 11 ~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~----------~~~~- 78 (149)
.++..|+.++ +++++|+|.+. .++.....|...+.. .+.|+++|+||+|+. ....+... ....
T Consensus 192 ~~~~~~i~~a-D~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~-~~~~~~~ee~e~l~~~~~~i~~~ 266 (695)
T 2j69_A 192 ELSLGYVNNC-HAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQV-RESLIDPDDVEELQASENRLRQV 266 (695)
T ss_dssp HHHTHHHHSS-SEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGG-GGGCSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccc-cccccChhhHHHHHHHHHHHHHH
Confidence 4455666665 55788889876 667777777655433 357899999999986 32211110 0111
Q ss_pred ----HHHH--------hCCcEEEecCC--------------CCCCHHHHHHHHHHHHHH
Q 032001 79 ----LADE--------YGIKFFETSAK--------------TNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 79 ----~~~~--------~~~~~~~~Sak--------------~~~~i~el~~~l~~~i~~ 111 (149)
+... ...+++++||+ ++.|+++++..+.+.+..
T Consensus 267 ~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 267 FNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 12368999999 999999999999887754
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.14 E-value=3.2e-06 Score=59.16 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=59.3
Q ss_pred ccccchhhhh--hcCeEEEEEeeCCh-hhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCC--CCHHHHHHHHH
Q 032001 9 FIGVYPPYLA--VLCRFKYCTYKIAS-YHFSD--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRA--VPTSKGQALAD 81 (149)
Q Consensus 9 ~~~~~~~~~~--~~~~~vi~v~~~~~-~s~~~--~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~ 81 (149)
|+.+...|+. ...+.+++++|++. .++.. +..|+. . .++|+++|+||+|+. +..+ .....+..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~-s~~~~~~~~~~~~~~~~ 167 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKL-ASGARKAQLNMVREAVL 167 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGS-CHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCC-CchhHHHHHHHHHHHHH
Confidence 3444445553 24456788889875 44432 233332 2 358999999999986 2111 11123333444
Q ss_pred HhC--CcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 82 EYG--IKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 82 ~~~--~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
..+ +.++++||+++.+++++++.|.+.+.
T Consensus 168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred hcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 443 46789999999999999999988663
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.13 E-value=1.4e-07 Score=72.12 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=61.2
Q ss_pred cccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHH--HHHHhC
Q 032001 8 CFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG 84 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~ 84 (149)
++..+...|+.+.++++++|.+.+. ..-.....|+..+ .+.+.|+++|+||+|+. +........... +....+
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~NK~Dl~-~~~~~~~~~~~~~~~~l~~~ 230 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVITKLDLM-DEGTDARDVLENKLLPLRRG 230 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEECGGGS-CTTCCCHHHHTTCSSCCTTC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEecccccc-CcchhHHHHHhCCcccccCC
Confidence 6677888999988888887877653 1111112233333 33578999999999997 322211111110 000123
Q ss_pred -CcEEEecCCCCCCHHHHHHHHHHH
Q 032001 85 -IKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 85 -~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
.+++.+||+++.|++++++.+.+.
T Consensus 231 ~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 231 YIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp EEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ceEEEeCCcccccccccHHHHHHHH
Confidence 256789999999999999999873
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.12 E-value=1.6e-05 Score=66.06 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=38.4
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
.+|...+..+++.++. +++|+|.++ ..+.....|. .+.. .++|+++|+||+|+.
T Consensus 93 ~df~~~~~~~l~~aD~-aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 93 VDFTIEVERSMRVLDG-AVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRM 147 (704)
T ss_pred cchHHHHHHHHHHCCE-EEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCcc
Confidence 4677788888887766 677778876 5555555553 3333 368999999999986
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.11 E-value=1.1e-05 Score=58.37 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=24.1
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
.+++++||+++.|+++++++|.+.+..
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhcc
Confidence 479999999999999999999987754
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=5.7e-07 Score=70.40 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=44.8
Q ss_pred hhhhcCeEEEEEeeCCh--hhHHHHH-HHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCH--HHHHHHHHHhCCcEEEe
Q 032001 16 YLAVLCRFKYCTYKIAS--YHFSDIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT--SKGQALADEYGIKFFET 90 (149)
Q Consensus 16 ~~~~~~~~vi~v~~~~~--~s~~~~~-~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~ 90 (149)
++.+... .+++|.+++ .+++..+ .|+..+. .++++|+|+||+|+. ..+.+.. ..+..++..++++++++
T Consensus 133 l~~d~~~-~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll-~~~ev~~~k~~i~~~~~~~~i~~~~~ 206 (418)
T 2qag_C 133 QMPDNRV-QCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTL-TPEECQQFKKQIMKEIQEHKIKIYEF 206 (418)
T ss_dssp CCCCC-C-CEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSS-CHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred hccCCCe-eEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCc-cHHHHHHHHHHHHHHHHHcCCeEEeC
Confidence 3334433 334444444 3566654 6777664 368999999999986 3222222 34556667789999999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 032001 91 SAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 91 Sak~~~~i~el~~~l~~~i~ 110 (149)
||+++.+++++|..+...++
T Consensus 207 sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 207 PETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp C-----------------CC
T ss_pred CCCCCcCHHHHHHHHHhhCC
Confidence 99999999998888877654
No 195
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.08 E-value=5.6e-07 Score=73.30 Aligned_cols=88 Identities=16% Similarity=0.026 Sum_probs=45.6
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-h---hH---HHHHHHHHHHHHhcCCCCe-EEEEeeCCCCCcCCCCCCH----H
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-Y---HF---SDIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVPT----S 74 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~---s~---~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl~~~~~~~~~----~ 74 (149)
++|...+..+++.++. +|+|+|.+. . .+ ......+..+.. .++| +|+|+||+|+. ....... .
T Consensus 266 ~~f~~~~~~~~~~aD~-alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~-~~~~~~~~~i~~ 340 (592)
T 3mca_A 266 RDFISGMIAGASSADF-AVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM-SWSEDRFQEIKN 340 (592)
T ss_dssp SEEEEECCC--------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCE-EEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc-cccHHHHHHHHH
Confidence 5677777777777665 566667764 2 11 111222222222 2455 99999999997 3111111 1
Q ss_pred HHHHHH-HHhCC-----cEEEecCCCCCCHH
Q 032001 75 KGQALA-DEYGI-----KFFETSAKTNLNVE 99 (149)
Q Consensus 75 ~~~~~~-~~~~~-----~~~~~Sak~~~~i~ 99 (149)
+...+. ...++ +++++||++|.|+.
T Consensus 341 el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 341 IVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 122222 22343 68999999999997
No 196
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=2.2e-06 Score=64.55 Aligned_cols=89 Identities=9% Similarity=0.150 Sum_probs=55.4
Q ss_pred cccchhhhhhcCeEEEEEeeCC-h-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCC--CHHHHHHHHHHhCC
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIA-S-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--PTSKGQALADEYGI 85 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~-~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 85 (149)
..+..+..++.+. +++|+|.. + .+.+.+++++..+.. .++|.++|.||+||. +.... ............|.
T Consensus 77 ~~l~R~~~anvD~-v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~-~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 77 NELIRPPICNVDQ-AVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLI-EDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CEETTTTEECCCE-EEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGC-CCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHhCCE-EEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccC-chhhhHHHHHHHHHHHHhCCC
Confidence 3444455566655 67777886 4 555666666655444 468999999999997 32110 01122233344578
Q ss_pred cEEEecCCCCCCHHHHHH
Q 032001 86 KFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 86 ~~~~~Sak~~~~i~el~~ 103 (149)
+++.+||+++.|+++|+.
T Consensus 152 ~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CEEECCHHHHTTCTTTGG
T ss_pred eEEEEecCCCCCHHHHHh
Confidence 999999988887765544
No 197
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.04 E-value=1.8e-05 Score=60.71 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred hhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHH---HHhCCcEEEecC
Q 032001 17 LAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA---DEYGIKFFETSA 92 (149)
Q Consensus 17 ~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa 92 (149)
.++.+. +++|++..+ .+...++.++-.... .++|.++|.||+||. +.. .......|. ...|++++.+||
T Consensus 128 ~anvD~-v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~-~~~--~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 128 AANIDQ-IVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLL-DDE--GMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EECCCE-EEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGC-CHH--HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HhcCCE-EEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCC-Cch--hHHHHHHHHHHHHhCCCcEEEEec
Confidence 355555 556677776 566677777765544 357889999999997 211 111123333 345789999999
Q ss_pred CCCCCHHHHHHHH
Q 032001 93 KTNLNVEQVFFSI 105 (149)
Q Consensus 93 k~~~~i~el~~~l 105 (149)
+++.|++++...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999876543
No 198
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.02 E-value=3.8e-05 Score=63.65 Aligned_cols=54 Identities=19% Similarity=0.094 Sum_probs=39.4
Q ss_pred ccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 7 LCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
..|...+..+++.++. +++|+|.++ .++.....|.. +.. .++|+++|+||+|+.
T Consensus 86 ~df~~~~~~~l~~aD~-~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 86 VDFTVEVERSLRVLDG-AVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKL 140 (693)
T ss_dssp SSCCHHHHHHHHHCSE-EEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTST
T ss_pred cchHHHHHHHHHHCCE-EEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcc
Confidence 4566777788888766 677778876 66666666644 444 368999999999986
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.92 E-value=2.6e-06 Score=65.13 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=57.5
Q ss_pred cccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
..+...|+.+.+.+ +++++..+ ... ...|+..+......+.|+++|+||+|+. .........+..+....+.+++
T Consensus 163 ~~~~~~~i~~~d~i-ilvv~~~~~~~~--~~~~~~l~~~~~~~~~~~i~V~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T 3t34_A 163 ENMVRSYIEKPNCI-ILAISPANQDLA--TSDAIKISREVDPSGDRTFGVLTKIDLM-DKGTDAVEILEGRSFKLKYPWV 238 (360)
T ss_dssp HHHHHHHHHSSSEE-EEEEEETTSCGG--GCHHHHHHHHSCTTCTTEEEEEECGGGC-CTTCCSHHHHTTSSSCCSSCCE
T ss_pred HHHHHHHhhcCCeE-EEEeecccCCcC--CHHHHHHHHHhcccCCCEEEEEeCCccC-CCcccHHHHHcCccccccCCeE
Confidence 55677788877665 44445432 211 1345555554444568999999999987 3333333333333334557789
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q 032001 89 ETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 89 ~~Sak~~~~i~el~~~l~~~ 108 (149)
.+++.++.++++.+..+...
T Consensus 239 ~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 239 GVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp EECCCCHHHHHTTCCHHHHH
T ss_pred EEEECChHHhccCCCHHHHH
Confidence 99999887777665554433
No 200
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.88 E-value=1.3e-05 Score=59.66 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=54.7
Q ss_pred ccccchhhhhhcCeEEEEEeeC-Chh-hHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCc
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKI-ASY-HFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 86 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~-~~~-s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (149)
+..++..|+.+.+. +++|+|. +.. .......+...+.. .+.|+++|+||+|+. .........+.......+..
T Consensus 157 ~~~~~~~~~~~~d~-iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~-~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 157 IRRMVMAYIKKQNA-IIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLM-DKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp HHHHHHHHHHSTTE-EEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSS-CSSCCCHHHHTTSSSCCTTC
T ss_pred HHHHHHHHHcCCCe-EEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccC-CcchHHHHHHhCCCccCCCC
Confidence 55666777777765 5666665 321 11111233333322 468999999999987 32221122221100111244
Q ss_pred EEEecC---CC---CCCHHHHHHHHHHHHHH
Q 032001 87 FFETSA---KT---NLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 87 ~~~~Sa---k~---~~~i~el~~~l~~~i~~ 111 (149)
++.+++ .+ +.|+.+++..+.+.+..
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 555554 44 78899999998887754
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.71 E-value=8.5e-05 Score=56.42 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred hcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCH--HHHHHHHHHh-------CCcEE
Q 032001 19 VLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT--SKGQALADEY-------GIKFF 88 (149)
Q Consensus 19 ~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~--~~~~~~~~~~-------~~~~~ 88 (149)
...|++++|+|... ..+..+.. .. .++|.++|+||+|+. ....... .......... ..+++
T Consensus 168 ~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 238 (341)
T 2p67_A 168 RMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGD-NHTNVAIARHMYESALHILRRKYDEWQPRVL 238 (341)
T ss_dssp TTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTT-CHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred HhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCC-ChHHHHHHHHHHHHHHHhccccccCCCCcEE
Confidence 45566788888764 22211111 11 135789999999986 2111100 0111111121 34688
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q 032001 89 ETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 89 ~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+||++|.|++++++.|.+.+.
T Consensus 239 ~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 239 TCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.68 E-value=2.4e-05 Score=57.42 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=49.8
Q ss_pred hhhhhcCeEEEEEeeCCh-hhHHH--HHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEec
Q 032001 15 PYLAVLCRFKYCTYKIAS-YHFSD--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 91 (149)
Q Consensus 15 ~~~~~~~~~vi~v~~~~~-~s~~~--~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 91 (149)
..+.++ +++++|.|..+ .+... +. |+ ++|.++|.||+|+. +.. .......+.+..+.++ .+|
T Consensus 17 ~~l~~~-D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~-~~~--~~~~~~~~~~~~g~~v-~iS 81 (262)
T 3cnl_A 17 DLLRLV-NTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIA-DEK--TTKKWVEFFKKQGKRV-ITT 81 (262)
T ss_dssp HHHTTC-SEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGS-CHH--HHHHHHHHHHHTTCCE-EEC
T ss_pred HHHhhC-CEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCC-CHH--HHHHHHHHHHHcCCeE-EEE
Confidence 444555 55788888874 32221 22 22 57999999999997 210 0111222334457788 999
Q ss_pred CCCCCCHHHHHHHHHH
Q 032001 92 AKTNLNVEQVFFSIAR 107 (149)
Q Consensus 92 ak~~~~i~el~~~l~~ 107 (149)
|+++.|+++++..+..
T Consensus 82 a~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 82 HKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CTTSCHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999999998877654
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.64 E-value=0.00029 Score=53.70 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=47.2
Q ss_pred hcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHH----------HhCCcE
Q 032001 19 VLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD----------EYGIKF 87 (149)
Q Consensus 19 ~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~ 87 (149)
...+++++|+|... .....+. ..+ -..|.++|+||+|+. ..... ......+.. ....++
T Consensus 186 ~~~d~vl~V~d~~~~~~~~~i~---~~i-----l~~~~ivVlNK~Dl~-~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~v 255 (349)
T 2www_A 186 DMVDMFVLLLPPAGGDELQGIK---RGI-----IEMADLVAVTKSDGD-LIVPA-RRIQAEYVSALKLLRKRSQVWKPKV 255 (349)
T ss_dssp TTCSEEEEEECCC--------------------CCSCSEEEECCCSGG-GHHHH-HHHHHHHHHHHTTCC-----CCCEE
T ss_pred hhCCEEEEEEcCCcchhHHHhH---HHH-----HhcCCEEEEeeecCC-CchhH-HHHHHHHHHHHHhcCccccCCCceE
Confidence 34566788888774 2211111 111 235778999999986 21000 011111211 113478
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Q 032001 88 FETSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 88 ~~~Sak~~~~i~el~~~l~~~i~~ 111 (149)
+.+||++|.|+++++++|.+.+..
T Consensus 256 i~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 256 IRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987643
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.59 E-value=1.4e-05 Score=66.84 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=61.2
Q ss_pred cccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHH----
Q 032001 8 CFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---- 82 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~---- 82 (149)
.+..+...|+....+++++|.|.+. ........+...+.. .+.|+|+|.||+|+. ........... ...
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~---~g~pvIlVlNKiDlv-~~~~~~~~il~--~~~~~l~ 248 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKLDLM-DEGTDARDVLE--NKLLPLR 248 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---TCSSEEEEEECTTSS-CTTCCSHHHHT--TCSSCCS
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---cCCCEEEEEeCcccC-CcchhhHHHHH--HHhhhhh
Confidence 3455677788778888999988874 222222234444432 468999999999987 32222221111 001
Q ss_pred hC-CcEEEecCCCCCCHHHHHHHHHHH
Q 032001 83 YG-IKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 83 ~~-~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
.+ .+++.+||++|.|+++|++.+.+.
T Consensus 249 lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 249 RGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp SCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCceEEecccccccchhHHHHHHHH
Confidence 12 257789999999999999998874
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.53 E-value=0.00044 Score=55.83 Aligned_cols=28 Identities=18% Similarity=0.085 Sum_probs=24.8
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.|++..||+++.||++|++.+++.++..
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP 296 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGP 296 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCS
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCC
Confidence 3788999999999999999999988654
No 206
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.16 E-value=0.0008 Score=48.95 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=33.0
Q ss_pred cCeEEEEEeeCChhhHHHH-HHHHHHHHHhcCCC--CeEEEEeeCCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDI-RNWIRNIEQHASDN--VNKVLVGNKADMD 65 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~-~~~~~~i~~~~~~~--~~iilv~nK~Dl~ 65 (149)
..+++++|++++...+... ..|+..+....+.+ .|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 3467899988886335444 47888877754433 4999999999986
No 207
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.00012 Score=56.84 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCeEEEEeeCCCCCcCCCCCCHHHHHHHHH---HhCCcEEEecCCCCCCHHHHHH
Q 032001 52 NVNKVLVGNKADMDESKRAVPTSKGQALAD---EYGIKFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~Sak~~~~i~el~~ 103 (149)
.+|+++|+||+|+. . ......+.+ ..+.+++.+||+.+.++.+++.
T Consensus 214 ~kP~i~v~NK~D~~-~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAA-S-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGS-C-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCcccc-c-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 48999999999975 2 122222222 2367899999999988876543
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.09 E-value=0.001 Score=50.41 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=23.0
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+++.+||+++.|++++++.|.+...
T Consensus 235 ~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 235 PPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999988664
No 209
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.02 E-value=0.0012 Score=48.24 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=33.0
Q ss_pred cCeEEEEEeeCChhhHHHH-HHHHHHHHHhcCCC--CeEEEEeeCCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDI-RNWIRNIEQHASDN--VNKVLVGNKADMD 65 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~-~~~~~~i~~~~~~~--~~iilv~nK~Dl~ 65 (149)
..+++++|++++..++... ..|+..+....+.+ .|+++|+||+|+.
T Consensus 119 ~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 119 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred CCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 4566888988875334433 47888876654333 6999999999986
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.82 E-value=0.0017 Score=53.23 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.|++..||+++.||+.|++.+.+.++..
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p 240 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFYSS 240 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCCCS
T ss_pred ccccccccccCCCchhHhhhhhccccCc
Confidence 4788999999999999999999877644
No 211
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.80 E-value=0.0016 Score=55.04 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=42.0
Q ss_pred cccccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 6 CLCFIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
-.+|...+..+++.+++ +++|+|.++ .++.....|.... . .++|+++|+||+|+.
T Consensus 108 ~~df~~~~~~~l~~aD~-ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 108 HVDFSSEVTAALRVTDG-ALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCSSCHHHHHHHHTCSE-EEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred chhhHHHHHHHHHhCCE-EEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 35688888899988877 677778887 6777777676543 2 368999999999986
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.54 E-value=0.016 Score=48.14 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=24.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHHH
Q 032001 85 IKFFETSAKTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 85 ~~~~~~Sak~~~~i~el~~~l~~~i~~~ 112 (149)
.|.+..||.++.|+..|++.+++.++..
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~lPsP 292 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYLPAP 292 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred eeeeeeecccCCchHHHHHHHHhhCCCC
Confidence 3678899999999999999999988654
No 213
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.08 E-value=0.0026 Score=51.32 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=38.2
Q ss_pred ccccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
|..++..++.+++ ++++|+|.+. ........|+..+.. .+.|+++|+||+|+.
T Consensus 178 f~~~~~~~l~~aD-~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 178 FPAVLRWFAERVD-LIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HHHHHHHHHHHCS-EEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred HHHHHHHHHHhCC-EEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 4456666776665 4788889876 455666777776654 357999999999987
No 214
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.29 E-value=0.18 Score=38.51 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=29.8
Q ss_pred CCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCC
Q 032001 52 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 94 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~ 94 (149)
..|+++++|+.|.. -...........++...+.+++.+||+.
T Consensus 199 ~KPvi~v~N~~e~~-~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDG-FENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTC-SSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEeccccc-ccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 58999999999864 2112223455667777788999999864
No 215
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.65 E-value=0.068 Score=40.97 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=35.6
Q ss_pred CCeEEEEeeCCCCCc-CC-CCCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHH
Q 032001 52 NVNKVLVGNKADMDE-SK-RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 103 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~el~~ 103 (149)
..|+++++||.|..- +. +.........++...+.+++++||+++.++.++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 379999999997320 11 12334556667777889999999998766655443
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.34 E-value=0.57 Score=37.38 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=43.2
Q ss_pred CeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcE-----------
Q 032001 21 CRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRAVPTSKGQALADEYGIKF----------- 87 (149)
Q Consensus 21 ~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~i-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----------- 87 (149)
.+.+++|.|... .. .......+.. .+|+ ++|.||+|.. .... .+.......+.|+
T Consensus 214 pd~vllVvDa~~g~~---~~~~a~~~~~----~~~i~gvVlNK~D~~-~~~g----~~l~~~~~~g~PI~fig~ge~~~d 281 (504)
T 2j37_W 214 PDNIVYVMDASIGQA---CEAQAKAFKD----KVDVASVIVTKLDGH-AKGG----GALSAVAATKSPIIFIGTGEHIDD 281 (504)
T ss_dssp CSEEEEEEETTCCTT---HHHHHHHHHH----HHCCCCEEEECTTSC-CCCT----HHHHHHHHHCCCEEEEECSSSTTC
T ss_pred CceEEEEEecccccc---HHHHHHHHHh----hcCceEEEEeCCccc-cchH----HHHHHHHHhCCCeEEeccccchhh
Confidence 355677777764 22 1112222322 1464 7889999976 2211 1222333444443
Q ss_pred -------EEecCCCCCC-HHHHHHHHHHH
Q 032001 88 -------FETSAKTNLN-VEQVFFSIARD 108 (149)
Q Consensus 88 -------~~~Sak~~~~-i~el~~~l~~~ 108 (149)
+.+|+.+|.| +.+|++++.+.
T Consensus 282 l~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 282 FEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3478889988 98888888765
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=79.58 E-value=4.5 Score=31.68 Aligned_cols=66 Identities=8% Similarity=-0.075 Sum_probs=35.1
Q ss_pred eEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCHH
Q 032001 22 RFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 99 (149)
Q Consensus 22 ~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~ 99 (149)
+.+++|.|... -.........+.+.. .+..+|.||.|.. .. ...+.......+.|+.+++. |++++
T Consensus 214 d~vlLVvDA~~--gq~a~~~a~~f~~~~---~i~gVIlTKlD~~-~~----gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 214 HEVILVIDGTI--GQQAYNQALAFKEAT---PIGSIIVTKLDGS-AK----GGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp SEEEEEEEGGG--GGGHHHHHHHHHHSC---TTEEEEEECCSSC-SS----HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred ceEEEEEeCCC--chhHHHHHHHHHhhC---CCeEEEEECCCCc-cc----ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 44666666653 111222223333321 2456888999976 21 22334444557888888775 65543
No 218
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=77.68 E-value=21 Score=27.18 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=36.0
Q ss_pred CeEEEEEeeCChhhHHHHHHHHHHHHHhcC--CCCeEEEEeeCCCCCc-------CCCCCCHHHHHHHHHHhCC
Q 032001 21 CRFKYCTYKIASYHFSDIRNWIRNIEQHAS--DNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYGI 85 (149)
Q Consensus 21 ~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~--~~~~iilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~ 85 (149)
++++++|.|..+ ...+...+..++..... ...|.+++.||.|... ........+...+...+.+
T Consensus 150 ad~il~vvD~~~-p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNK-PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTS-HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCc-cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence 455777778774 24445555555544321 4567888999999631 1122334555555555543
No 219
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=73.70 E-value=18 Score=24.56 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=39.3
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
..+.++++...+..+.......++.+.... +.++.+|.|+.|.. .. .. ........+..+.+++
T Consensus 90 ~aD~viiv~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~-~~-~~-~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 90 GCDLLVIPSTPDALALDALMLTIETLQKLG--NNRFRILLTIIPPY-PS-KD-GDEARQLLTTAGLPLF 153 (209)
T ss_dssp TSSEEEEEECSSHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT-TS-CH-HHHHHHHHHHTTCCBC
T ss_pred HCCEEEEEecCCchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc-cc-hH-HHHHHHHHHHcCCchh
Confidence 456677777777667777777777776532 45688999999854 10 11 2333344444565543
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=72.16 E-value=10 Score=25.24 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=39.5
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhc--CCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
..+.++++...+..+ .....+++.+.... ..+.++.+|.|+.|.. ... ........+.++.+++
T Consensus 97 ~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~---~~~-~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 97 VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM---ATM-LNVLKESIKDTGVKAF 162 (206)
T ss_dssp HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT---EEE-EHHHHHHHHHHTCCBC
T ss_pred HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC---chH-HHHHHHHHHHcCCcee
Confidence 345577777777666 77777777776543 2456789999999843 111 2333444455565544
No 221
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=71.37 E-value=26 Score=25.22 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=40.0
Q ss_pred hcCeEEEEEeeCChhhHHHHHHHHHHHHHhc-CCCCeEE-EEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 19 VLCRFKYCTYKIASYHFSDIRNWIRNIEQHA-SDNVNKV-LVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 19 ~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~-~~~~~ii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
...+.+++|...+..+...+..+++.+.... ..+.+++ +|.|+.+-. .....+.+..+.+++
T Consensus 178 ~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--------~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 178 QHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--------DEVDRFCKETNFRRL 241 (307)
T ss_dssp GTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------HHHHHHHHHHTCCEE
T ss_pred HHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--------HHHHHHHHHcCCCce
Confidence 3456677777777677888888888776532 2456654 889999832 234445556666554
No 222
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.56 E-value=19 Score=25.21 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=28.5
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHH---HhcCCCCeEE-EEeeCCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIE---QHASDNVNKV-LVGNKADMD 65 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~---~~~~~~~~ii-lv~nK~Dl~ 65 (149)
..+.++++...+..++..+..+++.+. .....+.+++ +|.|+.|..
T Consensus 133 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 133 AAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 345577777777656666555544443 3233467764 889999853
No 223
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=67.04 E-value=12 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=34.7
Q ss_pred CCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHHH
Q 032001 51 DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 51 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~el~~~l~~~i 109 (149)
...|.+++.||+|.. . .++...+. ....++.+|+..+.|++.|...+-+.+
T Consensus 248 ~~~p~i~v~nKid~~-~-----~eele~l~--~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL-S-----IEELELLY--RIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS-C-----HHHHHHHT--TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc-C-----HHHHHHHh--cccchhhhhhhhcccchhHHHHHHHHc
Confidence 346899999999975 1 22222211 123578999999999998877776655
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=66.01 E-value=11 Score=29.30 Aligned_cols=65 Identities=6% Similarity=-0.100 Sum_probs=36.5
Q ss_pred eEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCH
Q 032001 22 RFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 98 (149)
Q Consensus 22 ~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i 98 (149)
+.+++|.|... ..........+.+.. .+..+|.||.|.. . ....+.......+.|+.+++. |+++
T Consensus 213 d~vlLVlDa~~--gq~a~~~a~~f~~~~---~~~gVIlTKlD~~-a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 213 DDVILVIDASI--GQKAYDLASRFHQAS---PIGSVIITKMDGT-A----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp SEEEEEEEGGG--GGGGHHHHHHHHHHC---SSEEEEEECGGGC-S----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cceEEEEeCcc--chHHHHHHHHHhccc---CCcEEEEeccccc-c----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 34566666653 112222333343322 3567889999975 2 123344455567899888875 7665
No 225
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=63.87 E-value=7.7 Score=28.92 Aligned_cols=56 Identities=7% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCHHHHHHHHHHH
Q 032001 45 IEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 108 (149)
Q Consensus 45 i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~el~~~l~~~ 108 (149)
+.+....++|.|++ +|-|.+ .+.....++..+++++.++..+...+..+..+|...
T Consensus 73 ler~l~~~~P~IIl-trg~~~-------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 73 MRKLCRPETPAIIV-TRDLEP-------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp HHHHCCTTCCCEEE-CTTCCC-------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEE-eCCCCC-------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 33343346676554 677654 245667788889999998887777777776666553
No 226
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.53 E-value=10 Score=29.52 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=13.4
Q ss_pred CCCeEEEEeeCCCCC
Q 032001 51 DNVNKVLVGNKADMD 65 (149)
Q Consensus 51 ~~~~iilv~nK~Dl~ 65 (149)
.++|+|+|.||+|..
T Consensus 175 ~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 175 SKVNIIPIIAKADAI 189 (427)
T ss_dssp SCSEEEEEESCGGGS
T ss_pred hCCCEEEEEcchhcc
Confidence 578999999999976
No 227
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=60.51 E-value=37 Score=23.15 Aligned_cols=65 Identities=6% Similarity=0.014 Sum_probs=42.2
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEe
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 90 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (149)
..+.++++...+..+...+..+++.+.....+...+.+|.|+.+.. ..... ..+.+..+.+++..
T Consensus 140 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~---~~~~~---~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 140 HLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN---SRITS---DEIEKVIGRPISKR 204 (245)
T ss_dssp GCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC---TTSCH---HHHHHHHTSCEEEE
T ss_pred HCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC---CCCCH---HHHHHHhCCCeEEE
Confidence 4555777777777778888888888766443345678889999854 22222 23445567766643
No 228
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=59.01 E-value=21 Score=27.51 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=37.5
Q ss_pred CCeEEEEeeCCCCCc------CCCCCCHHH----HHHHH----HHhC---CcEEEecC--CCCCCHHHHHHHHHHHHHHH
Q 032001 52 NVNKVLVGNKADMDE------SKRAVPTSK----GQALA----DEYG---IKFFETSA--KTNLNVEQVFFSIARDIKQR 112 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~------~~~~~~~~~----~~~~~----~~~~---~~~~~~Sa--k~~~~i~el~~~l~~~i~~~ 112 (149)
+.|+++|.||.|+.- .-+...... ...+. ...+ ..++.+|+ ..+.|++++.+.+.+.+++.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 579999999999630 001111222 22222 1222 35788999 66667999999998877554
No 229
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=57.59 E-value=15 Score=28.19 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=28.7
Q ss_pred CCeEEEEeeCCCCCcC-CCCCCHHHHHHHHHHhC--CcEEEecCCC
Q 032001 52 NVNKVLVGNKADMDES-KRAVPTSKGQALADEYG--IKFFETSAKT 94 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~--~~~~~~Sak~ 94 (149)
..|++.++|+.|..-. ...........++...+ .+++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 4899999999983201 11223455666766665 7899999986
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=57.11 E-value=23 Score=25.89 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=27.0
Q ss_pred Ce-EEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q 032001 53 VN-KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 101 (149)
Q Consensus 53 ~~-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~el 101 (149)
.+ ..+|.||.|.. . ....+.......+.|+.+++ +|++++++
T Consensus 239 ~~i~gvVlnk~D~~-~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 239 SKIGTIIITKMDGT-A----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CTTEEEEEECGGGC-T----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred CCCCEEEEeCCCCC-c----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 44 67788999965 2 12234445666788888776 57777554
No 231
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=48.89 E-value=38 Score=23.65 Aligned_cols=43 Identities=2% Similarity=-0.029 Sum_probs=30.2
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKAD 63 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~D 63 (149)
.++.++++...+..+...+..+.+.+.... .+.++.+|.|+.+
T Consensus 166 ~aD~vivv~~~~~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 166 CSDYVIIPMTAEKWAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEEESCTTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred HCCeEEEEeCCChHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 345577777777666777777777766543 4567788999994
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=46.90 E-value=61 Score=25.02 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=19.8
Q ss_pred EEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEec
Q 032001 55 KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 91 (149)
Q Consensus 55 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 91 (149)
..+|.||+|.. .. ...+..+....+.++.+++
T Consensus 241 ~gvVlnK~D~~-~~----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 241 GSIIVTKLDGS-AK----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp EEEEEECSSSC-ST----THHHHHHHHHSSCCEEEEC
T ss_pred eEEEEeCCCCc-cc----hHHHHHHHHHHCCCEEEee
Confidence 78899999975 21 1223345566677766654
No 233
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=45.55 E-value=29 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=27.1
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKV-LVGNKADMD 65 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~ii-lv~nK~Dl~ 65 (149)
..+.+++|...+..+...+....+.+.+ .+.+++ +|.|+.|..
T Consensus 214 ~aD~vilVv~~~~~~~~~~~~~~~~l~~---~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 214 FTGNVVYVVNSENNNKDEVKKGKELIEA---TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHCEEEEEEETTSCCHHHHHHHHHHHHT---TTCEEEEEEEEEECC-
T ss_pred HCCEEEEEEeCCCCcHHHHHHHHHHHHh---CCCCEEEEEEeCCcCC
Confidence 3455677777765566777776666654 235554 778888754
No 234
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=44.57 E-value=43 Score=23.46 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=36.9
Q ss_pred CeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEE-EEeeCCCCCc----CCCCC-CHHHHHHHHHHhCCcEEE
Q 032001 21 CRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKV-LVGNKADMDE----SKRAV-PTSKGQALADEYGIKFFE 89 (149)
Q Consensus 21 ~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~ii-lv~nK~Dl~~----~~~~~-~~~~~~~~~~~~~~~~~~ 89 (149)
.+.++++...+..+...+...++.+.. .+.+++ +|.|+.|... ..... .......+.+.++.+++.
T Consensus 153 aD~viiv~~~~~~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 153 PTGVVVVSTPQELTAVIVEKAINMAEE---TNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CSEEEEEECSSSCCHHHHHHHHHHHHT---TTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEE
T ss_pred CCeEEEEecCccchHHHHHHHHHHHHh---CCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEE
Confidence 455677766665566777777766654 245665 8899987410 00001 111234455667777654
No 235
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=40.38 E-value=64 Score=22.89 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=26.6
Q ss_pred CeEEEEEeeCChhhHHHHHHHHHHHHH---hcCCCCeE-EEEeeCCCCC
Q 032001 21 CRFKYCTYKIASYHFSDIRNWIRNIEQ---HASDNVNK-VLVGNKADMD 65 (149)
Q Consensus 21 ~~~vi~v~~~~~~s~~~~~~~~~~i~~---~~~~~~~i-ilv~nK~Dl~ 65 (149)
.+.++++...+..+...+..+++.+.. ....+.++ -+|.|+.|..
T Consensus 177 aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 177 SDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp CSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 455677766665556665555544433 22345664 4888999854
No 236
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.87 E-value=74 Score=21.49 Aligned_cols=42 Identities=10% Similarity=-0.140 Sum_probs=28.1
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKAD 63 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~D 63 (149)
..+.++++...+..++..+..+.+.+.... -..+.+|.|+.+
T Consensus 153 ~aD~viiv~~~~~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 153 AVDMMIAVIEPNLNSIKTGLNIEKLAGDLG--IKKVRYVINKVR 194 (254)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred HCCEEEEecCCCHHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence 445577777777667777777766554432 145778889997
No 237
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=36.98 E-value=27 Score=22.47 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=38.6
Q ss_pred hcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCC
Q 032001 19 VLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 97 (149)
Q Consensus 19 ~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~ 97 (149)
+-..+||+.-|+++ +....+..+- .. .++|++.+++|.+|- .......+...+-+.-..+..
T Consensus 47 gkakLViiA~D~~p~~~~~~l~~lc---~~---~~VP~~~v~sk~eLG-----------~a~G~~~~~s~vaI~d~~~s~ 109 (134)
T 2ale_A 47 GISEFIIMAADCEPIEILLHLPLLC---ED---KNVPYVFVPSRVALG-----------RACGVSRPVIAASITTNDASA 109 (134)
T ss_dssp TCEEEEEEETTCSSGGGGTHHHHHH---HH---HTCCEEEESCHHHHH-----------HHTTCSSCCSEEEEECCTTCT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHH---Hh---cCCCEEEECCHHHHH-----------HHhCCCCCeEEEEEEcCChHH
Confidence 34455566656665 3333333322 22 258988887776652 111111122234343344456
Q ss_pred HHHHHHHHHHHHHHH
Q 032001 98 VEQVFFSIARDIKQR 112 (149)
Q Consensus 98 i~el~~~l~~~i~~~ 112 (149)
+..+++.+...+...
T Consensus 110 ~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 110 IKTQIYAVKDKIETL 124 (134)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777666443
No 238
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=36.93 E-value=63 Score=23.06 Aligned_cols=13 Identities=46% Similarity=0.289 Sum_probs=12.0
Q ss_pred CeEEEEeeCCCCC
Q 032001 53 VNKVLVGNKADMD 65 (149)
Q Consensus 53 ~~iilv~nK~Dl~ 65 (149)
+++|+|.+|.|..
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 8999999999976
No 239
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=36.29 E-value=48 Score=22.83 Aligned_cols=45 Identities=7% Similarity=0.028 Sum_probs=30.6
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcC------CCCeEEEEeeCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHAS------DNVNKVLVGNKADM 64 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~------~~~~iilv~nK~Dl 64 (149)
..+.++++...+..+......++..+..... ....+.+|.|+.+.
T Consensus 135 ~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 135 FADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred hCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 4565777777776777777777777654321 22577889999984
No 240
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=35.57 E-value=68 Score=25.68 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEec--CCCCCCHHHHHHHHHHHH
Q 032001 52 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS--AKTNLNVEQVFFSIARDI 109 (149)
Q Consensus 52 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S--ak~~~~i~el~~~l~~~i 109 (149)
.+|+|+..|+.... ...+.+....++...+.++..+. ++-|+|-.+|-+.+++.+
T Consensus 360 GvpvVVaiN~F~tD---T~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 360 NLPVVVALNRFSTD---TEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp TCCEEEEEECCTTC---CHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCC---CHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHh
Confidence 58999999998643 22223445677788888654333 456677777766666544
No 241
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=33.31 E-value=1.1e+02 Score=20.44 Aligned_cols=38 Identities=8% Similarity=-0.084 Sum_probs=19.0
Q ss_pred EEEEeeCChhhHHHHHHHHHHHHHhcCCCCeE-EEEeeCCCC
Q 032001 24 KYCTYKIASYHFSDIRNWIRNIEQHASDNVNK-VLVGNKADM 64 (149)
Q Consensus 24 vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~i-ilv~nK~Dl 64 (149)
+++|......+.......++.+++ .+.++ -+|.|+.|.
T Consensus 141 vi~v~~~~~~~~~~~~~~i~~l~~---~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 141 VILVVGVKLGCINHAMLTAQVIQH---AGLTLAGWVANDVTP 179 (224)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHH---TTCCEEEEEEECCSS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHH---CCCcEEEEEEeCCCC
Confidence 444444443445555555555543 23443 366777763
No 242
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.66 E-value=23 Score=20.57 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=8.0
Q ss_pred CCeEEEEeeCCCC
Q 032001 52 NVNKVLVGNKADM 64 (149)
Q Consensus 52 ~~~iilv~nK~Dl 64 (149)
++|++.+.+|.+|
T Consensus 53 ~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 53 GISVSMVESMKKL 65 (82)
T ss_dssp TCCEEEESCHHHH
T ss_pred CCCEEEECCHHHH
Confidence 4677766665544
No 243
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=31.58 E-value=1.2e+02 Score=20.40 Aligned_cols=44 Identities=7% Similarity=-0.185 Sum_probs=30.0
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
..+.++++...+..+.......++.+.+.. ...+.+|.|+.+..
T Consensus 133 ~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 133 SGEEALLVTNPEISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRS 176 (237)
T ss_dssp TCSEEEEEECSCHHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSC
T ss_pred HCCeEEEEecCCcccHHHHHHHHHHHHhCC--CceEEEEEecCCcc
Confidence 445577777777667777777777776541 23566788999854
No 244
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=31.28 E-value=1.3e+02 Score=20.75 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=39.4
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcC-CCCeE-EEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHAS-DNVNK-VLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~-~~~~i-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
..+.++++...+..+...+..++..+..... .+.++ .+|.|+.+.. ........+.+.++.+++
T Consensus 140 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-----~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 140 KAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA-----NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp SCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-----CCHHHHHHHHHHHTCCEE
T ss_pred hCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-----hhHHHHHHHHHHcCCccc
Confidence 4666788877776677777777776665432 24554 6788998632 123444555566676554
No 245
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=30.46 E-value=1.3e+02 Score=20.61 Aligned_cols=62 Identities=8% Similarity=-0.151 Sum_probs=37.0
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
..+.++++...+..+...+..+++.+.+.. ...+.+|.|+.+.. ... .....+.+..+.+++
T Consensus 132 ~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~---~~~--~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 132 AAQELLLVVNPEISSITDGLKTKIVAERLG--TKVLGVVVNRITTL---GIE--MAKNEIEAILEAKVI 193 (263)
T ss_dssp HSSEEEEEECSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTT---THH--HHHHHHHHHTTSCEE
T ss_pred HCCEEEEEeCCChhHHHHHHHHHHHHHhcC--CCeeEEEEccCCcc---ccc--chHHHHHHHhCCCeE
Confidence 445577777777666777777777776542 23556889999853 111 233344455565543
No 246
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=26.73 E-value=68 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=20.1
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCe-EEEEeeCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVN-KVLVGNKADM 64 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~-iilv~nK~Dl 64 (149)
..+.+++|...+..+...+...++.+.+. +.+ +-+|.|+.|.
T Consensus 236 ~ad~vilV~~~~~~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 236 SVGTSLLVARFGLNTAKEVSLSMQRLEQA---GVNIKGAILNGVIK 278 (299)
T ss_dssp GCSEEEEEEETTTSCTTHHHHHHHHHHHT---TCCCCCEEEEECCC
T ss_pred HCCEEEEEEcCCCChHHHHHHHHHHHHhC---CCCeEEEEEeCCcc
Confidence 34445555555543444555555554442 122 2255577764
No 247
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=26.65 E-value=28 Score=28.16 Aligned_cols=53 Identities=6% Similarity=0.055 Sum_probs=30.1
Q ss_pred cccchhhhhhcCeEEEEEeeCCh-hhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 10 IGVYPPYLAVLCRFKYCTYKIAS-YHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 10 ~~~~~~~~~~~~~~vi~v~~~~~-~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
..+...|......+++++...+. ..-.....+..++. +...+.|+|.||.|+.
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~---~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD---PEGDRTIGILTKPDLV 227 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC---SSCCSEEEEEECGGGS
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh---hcCCceEEEecchhhc
Confidence 34455565555566666655442 11122334444432 2457899999999976
No 248
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=25.97 E-value=97 Score=20.30 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=30.8
Q ss_pred cccchhhhhh--------cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCC
Q 032001 10 IGVYPPYLAV--------LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKAD 63 (149)
Q Consensus 10 ~~~~~~~~~~--------~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~D 63 (149)
+.+..+||.. .++..|+++|-.=.+..++...++.+.+ .+.|.++++--++
T Consensus 6 rGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~---~~~pLlIIAedve 64 (145)
T 1srv_A 6 KGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQ---TGKPLLIIAEDVE 64 (145)
T ss_dssp CCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHT---TTCCEEEEESEEC
T ss_pred CCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHH---HCCCEEEEecccc
Confidence 4556667744 3455666654322455666666666554 4578999887765
No 249
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=25.25 E-value=71 Score=20.20 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=7.4
Q ss_pred CCeEEEEeeCCCC
Q 032001 52 NVNKVLVGNKADM 64 (149)
Q Consensus 52 ~~~iilv~nK~Dl 64 (149)
++|++.+.+|.+|
T Consensus 67 ~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 67 EIKYVSVPKRASL 79 (126)
T ss_dssp TCCEEEESCSHHH
T ss_pred CCCEEEECCHHHH
Confidence 4666666555543
No 250
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=24.90 E-value=42 Score=20.14 Aligned_cols=40 Identities=8% Similarity=-0.056 Sum_probs=19.9
Q ss_pred hcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 032001 19 VLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADM 64 (149)
Q Consensus 19 ~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl 64 (149)
+-..+||+.-|.++.... .+..+-.. .++|++.+++|.+|
T Consensus 33 gka~lViiA~D~~~~~~~----~i~~~c~~--~~ip~~~~~s~~eL 72 (101)
T 3on1_A 33 GQVTLVILSSDAGIHTKK----KLLDKCGS--YQIPVKVVGNRQML 72 (101)
T ss_dssp TCCSEEEEETTSCHHHHH----HHHHHHHH--HTCCEEEESCHHHH
T ss_pred CCCcEEEEeCCCCHHHHH----HHHHHHHH--cCCCEEEeCCHHHH
Confidence 344556666555542222 22222221 25888887666654
No 251
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.66 E-value=1.2e+02 Score=21.69 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=29.8
Q ss_pred hhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCC
Q 032001 17 LAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMD 65 (149)
Q Consensus 17 ~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~ 65 (149)
+....+.+++|...+..+...+...++.+.+.. -..+-+|.|++|..
T Consensus 221 l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 221 VGRHVGTTLMVARYAVNTLKEVETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp HTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred HHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 334456677777777656677777777766532 12345677998854
No 252
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.61 E-value=42 Score=20.20 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=19.9
Q ss_pred cCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCC
Q 032001 20 LCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADM 64 (149)
Q Consensus 20 ~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl 64 (149)
-..+||+.-|.++.. ..++...... .++|++.+++|.+|
T Consensus 35 ka~lViiA~D~~~~~---~~~i~~~c~~---~~vp~~~~~s~~eL 73 (101)
T 3v7q_A 35 RAKLVLLTEDASSNT---AKKVTDKCNY---YKVPYKKVESRAVL 73 (101)
T ss_dssp CCSEEEEETTSCHHH---HHHHHHHHHH---TTCCEEEESCHHHH
T ss_pred ceeEEEEeccccccc---hhhhcccccc---cCCCeeeechHHHH
Confidence 445555555555422 2222222222 46888888776665
No 253
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=23.91 E-value=59 Score=21.13 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEe
Q 032001 37 DIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 90 (149)
Q Consensus 37 ~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (149)
....++..+.... .++.+| |..+.|-. .............+...|+.++.+
T Consensus 61 ~l~~ll~~~~~g~-~~~d~l-vv~~ldRl-~R~~~~~~~~~~~l~~~gv~l~~~ 111 (167)
T 3guv_A 61 QFNRMMEDIKSGK-DGVSFV-LVFKLSRF-ARNAADVLSTLQIMQDYGVNLICV 111 (167)
T ss_dssp HHHHHHHHHHTCT-TCCSEE-EESCGGGT-CSSHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHcCC-CCccEE-EEEeCchh-cCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455555554411 114444 44678755 222222223334456778776644
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=23.54 E-value=1.4e+02 Score=22.04 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=25.5
Q ss_pred EEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEEEecCCCCCCHHHH
Q 032001 56 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 101 (149)
Q Consensus 56 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sak~~~~i~el 101 (149)
+++.||.|.. .. .-.+.......+.|+.+++ +|++++++
T Consensus 272 ~iilTKlD~~-a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 272 GIILTKLDAD-AR----GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp EEEEECGGGC-SC----CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred EEEEeCcCCc-cc----hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 6677999964 21 1234455667788888877 67777553
No 255
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.39 E-value=1.4e+02 Score=18.60 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=40.0
Q ss_pred ccccchhhhhhcCeEEEEEeeCChhhHHHHHHHHHHHHHhcCCCCeEEEEeeCCCCCcCCCCCCHHHHHHHHHHhCCcEE
Q 032001 9 FIGVYPPYLAVLCRFKYCTYKIASYHFSDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 88 (149)
Q Consensus 9 ~~~~~~~~~~~~~~~vi~v~~~~~~s~~~~~~~~~~i~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (149)
-+.+|..| . .-+++++| ..++. +++..++++.+. .++.+++|.|--|-. + ..++.+-....|..+-
T Consensus 68 ireiwery-p-qldvvviv-ttddk--ewikdfieeake---rgvevfvvynnkddd---r---rkeaqqefrsdgvdvr 133 (162)
T 2l82_A 68 IREIWERY-P-QLDVVVIV-TTDDK--EWIKDFIEEAKE---RGVEVFVVYNNKDDD---R---RKEAQQEFRSDGVDVR 133 (162)
T ss_dssp HHHHHHHC-T-TCCEEEEE-ECCCH--HHHHHHHHHHHH---TTCEEEEEEECSCHH---H---HHHHHHHHCCSSCEEE
T ss_pred HHHHHHhC-C-CCcEEEEE-ecCcH--HHHHHHHHHHHh---cCcEEEEEecCCCch---h---HHHHHHHhhhcCceee
Confidence 34455554 2 23433333 33332 566777777666 356776665544421 1 1233333333455554
Q ss_pred EecCCCCCCHHHHHHHHHHHHH
Q 032001 89 ETSAKTNLNVEQVFFSIARDIK 110 (149)
Q Consensus 89 ~~Sak~~~~i~el~~~l~~~i~ 110 (149)
.+|- -++|...+-+.+.
T Consensus 134 tvsd-----keelieqvrrfvr 150 (162)
T 2l82_A 134 TVSD-----KEELIEQVRRFVR 150 (162)
T ss_dssp EESS-----HHHHHHHHHHHHH
T ss_pred ecCC-----HHHHHHHHHHHHH
Confidence 4543 3566665555443
No 256
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=22.62 E-value=57 Score=23.95 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHhCCcEEE---------ecCCCCCCHHHHHHHHHHHHHH
Q 032001 68 KRAVPTSKGQALADEYGIKFFE---------TSAKTNLNVEQVFFSIARDIKQ 111 (149)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~---------~Sak~~~~i~el~~~l~~~i~~ 111 (149)
...+..+....|+..+++.-+. .+|+||..|++++..|.+.+..
T Consensus 222 ~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~ 274 (306)
T 3tnt_A 222 RFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 274 (306)
T ss_dssp SCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3556778888999998863332 5789999999999999986654
No 257
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.28 E-value=52 Score=21.06 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.0
Q ss_pred CCCeEEEEeeCCCC
Q 032001 51 DNVNKVLVGNKADM 64 (149)
Q Consensus 51 ~~~~iilv~nK~Dl 64 (149)
.++|++.+.+|.+|
T Consensus 83 ~~IP~~~v~sk~eL 96 (135)
T 2aif_A 83 KNTPYVFVRSKVAL 96 (135)
T ss_dssp TTCCEEEESCHHHH
T ss_pred cCCcEEEECCHHHH
Confidence 36898888776654
No 258
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=21.72 E-value=58 Score=20.14 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.1
Q ss_pred CCCeEEEE-eeCCCC
Q 032001 51 DNVNKVLV-GNKADM 64 (149)
Q Consensus 51 ~~~~iilv-~nK~Dl 64 (149)
.++|++.+ +++.+|
T Consensus 67 ~~ipv~~~~~s~~eL 81 (112)
T 3iz5_f 67 AKISVHHFHGNNVDL 81 (112)
T ss_dssp TTCCEECCCCTTCTH
T ss_pred cCCcEEEeCCCHHHH
Confidence 35788877 777765
No 259
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=20.99 E-value=1.6e+02 Score=20.08 Aligned_cols=13 Identities=8% Similarity=-0.189 Sum_probs=10.2
Q ss_pred cCeEEEEEeeCCh
Q 032001 20 LCRFKYCTYKIAS 32 (149)
Q Consensus 20 ~~~~vi~v~~~~~ 32 (149)
..|++++.-|+.+
T Consensus 32 ~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 32 QPDILVVVGNILK 44 (260)
T ss_dssp CCSEEEEESCCCC
T ss_pred CCCEEEECCCCCC
Confidence 4577899988875
No 260
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=20.19 E-value=43 Score=16.76 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=6.9
Q ss_pred CCCCCCccCC
Q 032001 139 AAQKSACCGG 148 (149)
Q Consensus 139 ~~~~~~Cc~~ 148 (149)
.++...|||+
T Consensus 8 C~ktedCCCp 17 (42)
T 1qdp_A 8 CGKNEDCCCP 17 (42)
T ss_dssp CSSTTSCCSS
T ss_pred hccccccCcc
Confidence 4566778876
Done!