BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032003
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L I++ +VT +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
+LA+AK +K+DLSS+++V SGAAPLGKEL + P+A + Q
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 15 VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ L IEK++V+ VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
++AK + K DLSSL+++ SG APLGKEL + P A + Q
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
LAK L+ K+DLS+L + SG APL KE+ E AK
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G I+LM +F+ E+FLR+++ +++ +VP L
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
AK LV K+DLS+L + SG APL KE+ E AK
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKR 364
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
AK L+ K+DLS+L + SG APL KE+ E AK
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
AK L+ K+DLS+L + SG APL KE+ E AK
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
AK L+ K+DLS+L + SG APL KE+ E AK
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 72.0 bits (175), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T++ +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
K L+ K+DLS+L + SG APL KE+ E A+ N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 71.2 bits (173), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
K L+ K+DLS+L + SG APL KE+ E A+ N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 71.2 bits (173), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
K L+ K+DLS+L + SG APL KE+ E A+ N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D +L VLP++H+ GL+V+ ++ G + ++ KF+ E L I+ R+THI +VP +
Sbjct: 204 DTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTL 262
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVP 112
L + GL + ++L + L G A L ++E + N+P
Sbjct: 263 NWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP 300
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L +LPLFHV GL ++ Q Q G ++ AKFD R IE H+VT + P++
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
+ + L+SL+ V P E +E P+AT
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNAT 297
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 42.7 bits (99), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 21 PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
P FH FGL + + G+ ++ F+ E IEK++ T W VPP + L
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78 -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK 136
K +D S LK+ +GA P+ L+E+ K L E CN+ +L+
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLK---------------LAAEKCNNPRLR 330
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
+LC +P H + ++ + G G ++L A + IEKH+V +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75 LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ 121
L L++ + L+SLKL+ G A L L A +P+ Q+ Q
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQ 332
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP+ H + L+ G L G ++L + IE+ +VT +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
++ DLSSL+++ G A E K V T+ QV
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARR-VKAVFGCTLQQV 329
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 37.0 bits (84), Expect = 0.005, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
LC LP H F L+ G L G C+++ + I++H+V +VP ++
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
+ K + SLKL+ G G E A+ VP
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVP 328
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 35.4 bits (80), Expect = 0.013, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130
+ + D + +G AP+ + L++ + +A I+VVQ + ESC
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIK-----IYAAKNIEVVQ-GYALTESC 321
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 35.0 bits (79), Expect = 0.014, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP H + L+ G L G ++L + IE+ +VT +VPPL
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
++ DLSSL+++ G A E K V T+ QV
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARR-VKAVFGCTLQQV 329
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.040, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWE 396
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQVVQFEHLYYESCNDYK 134
+ + D + +G AP+ + L++ AKN I+VVQ L ESC
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN------IEVVQGYAL-TESCGGGT 311
Query: 135 L 135
L
Sbjct: 312 L 312
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 32.7 bits (73), Expect = 0.069, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 20 LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH- 78
LPLFHV GL + G L++G + + +F E R + T ++ VP + +A+
Sbjct: 203 LPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETL 261
Query: 79 ----GLVKKFDLSSLKLVGSGAAPL 99
L K + L + GS A P+
Sbjct: 262 PADPELAKALAGARLLVSGSAALPV 286
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 32.7 bits (73), Expect = 0.077, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 57 IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
I++H+VT +V P + L + G ++ L SL+ +GS P+ E+ E
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWE 402
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 55 RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELME 105
+ ++KH+V ++ P I AL G ++ D SSL+++GS P+ E E
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 31.6 bits (70), Expect = 0.17, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L I + KFD + L R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPL 99
L + + K +L SG+APL
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPL 280
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 30.8 bits (68), Expect = 0.27, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPL 99
L + + ++L SG+APL
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPL 280
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 30.8 bits (68), Expect = 0.27, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPL 99
L + + ++L SG+APL
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPL 280
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 30.8 bits (68), Expect = 0.27, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPL 99
L + + ++L SG+APL
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPL 280
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A + ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 30.4 bits (67), Expect = 0.41, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A + ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A + ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A + ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A + ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV 301
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 101 KELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFF 145
+E++EE AK+ P V+ EH+Y ++ L+R +EF +
Sbjct: 215 REVVEEVAKDYPD------VELEHIYIDNATMQLLRRPNEFDVML 253
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 99 LGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFF 145
L +E++EE AK+ P V+ EH+Y ++ L+R +EF +
Sbjct: 213 LWREVVEEVAKDYPD------VELEHIYIDNATMQLLRRPNEFDVML 253
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 29.3 bits (64), Expect = 0.76, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 90 KLVGSGAAPLGKELMEECAKNVPSATV 116
KL +G+ +G++LME+CAK++ ++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDIKKVSL 253
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 29.3 bits (64), Expect = 0.76, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 90 KLVGSGAAPLGKELMEECAKNVPSATV 116
KL +G+ +G++LME+CAK++ ++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDIKKVSL 253
>pdb|2YYB|A Chain A, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
pdb|2YYB|B Chain B, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
Length = 242
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 21 PLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
PL H GL + L GS L+ K D ++F+ KH V H
Sbjct: 153 PLVHQGGLDHVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFH 196
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 36 LQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
L+ G+ I +A D E E R I ++P ++ +AK G+ ++ ++ L+ +G
Sbjct: 170 LRIGARFIGIAARDWETGEINKENQR-KLISMIPSNVVKVAKEGISERNEIEELRKLGVN 228
Query: 96 AAPLGKELMEECAK 109
A +G LM K
Sbjct: 229 AFLIGSSLMRNPEK 242
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L + PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
LA L SL+ V A ++E +++P V
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV 301
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 101 KELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFF 145
++++EE A + P V+ EH+Y ++ L+R DEF +
Sbjct: 215 RQVVEEVAVDFPD------VELEHIYIDNATMQLLRRPDEFDVML 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,336
Number of Sequences: 62578
Number of extensions: 143462
Number of successful extensions: 489
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 45
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)