Query 032003
Match_columns 149
No_of_seqs 128 out of 1068
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176 Acyl-CoA synthetase [L 99.9 1.7E-21 3.6E-26 149.3 15.0 131 14-144 226-357 (537)
2 COG0365 Acs Acyl-coenzyme A sy 99.9 2.7E-21 5.8E-26 147.6 12.9 122 8-130 207-332 (528)
3 KOG1177 Long chain fatty acid 99.9 5.7E-21 1.2E-25 141.2 11.1 126 8-133 269-396 (596)
4 COG0318 CaiC Acyl-CoA syntheta 99.8 5.8E-19 1.2E-23 136.6 14.5 122 11-132 211-336 (534)
5 PRK06334 long chain fatty acid 99.8 8.3E-19 1.8E-23 135.8 13.9 122 9-130 219-342 (539)
6 PRK07788 acyl-CoA synthetase; 99.8 4.1E-18 8.8E-23 132.0 13.4 120 9-130 243-365 (549)
7 PRK08314 long-chain-fatty-acid 99.8 8.3E-18 1.8E-22 130.0 14.0 121 9-130 226-347 (546)
8 PRK07656 long-chain-fatty-acid 99.8 1.5E-17 3.2E-22 127.5 13.9 123 8-130 201-324 (513)
9 PLN02246 4-coumarate--CoA liga 99.8 1.7E-17 3.7E-22 128.2 14.2 121 9-129 219-340 (537)
10 PLN02654 acetate-CoA ligase 99.8 1.5E-17 3.2E-22 131.7 14.0 123 8-130 311-442 (666)
11 PLN02860 o-succinylbenzoate-Co 99.8 9E-18 2E-22 130.5 12.3 119 9-128 208-329 (563)
12 PRK13295 cyclohexanecarboxylat 99.8 3.8E-17 8.2E-22 126.6 14.7 121 9-130 233-354 (547)
13 PLN02574 4-coumarate--CoA liga 99.8 3.1E-17 6.6E-22 127.5 14.1 117 14-130 245-362 (560)
14 PF00501 AMP-binding: AMP-bind 99.7 1E-17 2.2E-22 125.5 9.9 117 14-130 197-320 (417)
15 PLN03051 acyl-activating enzym 99.7 2.8E-17 6.1E-22 126.2 12.5 118 9-127 155-277 (499)
16 PRK07529 AMP-binding domain pr 99.7 6.4E-17 1.4E-21 127.4 14.7 120 9-130 249-375 (632)
17 TIGR03208 cyc_hxne_CoA_lg cycl 99.7 7.5E-17 1.6E-21 124.7 14.4 121 9-130 231-352 (538)
18 PRK06839 acyl-CoA synthetase; 99.7 8.7E-17 1.9E-21 122.8 14.2 118 10-129 186-304 (496)
19 TIGR02316 propion_prpE propion 99.7 4.8E-17 1E-21 128.0 13.1 119 8-127 268-393 (628)
20 PRK08633 2-acyl-glycerophospho 99.7 7.8E-17 1.7E-21 133.6 14.1 121 9-130 818-940 (1146)
21 PRK06145 acyl-CoA synthetase; 99.7 1.4E-16 3E-21 121.9 14.4 121 9-129 185-306 (497)
22 PRK08316 acyl-CoA synthetase; 99.7 1.4E-16 3.1E-21 122.3 14.1 122 9-130 207-329 (523)
23 TIGR02188 Ac_CoA_lig_AcsA acet 99.7 1.1E-16 2.5E-21 125.7 13.9 123 8-130 272-403 (625)
24 PRK08043 bifunctional acyl-[ac 99.7 6.3E-17 1.4E-21 129.1 12.4 120 8-130 400-521 (718)
25 PRK13382 acyl-CoA synthetase; 99.7 1.4E-16 3E-21 123.3 13.9 119 10-130 233-354 (537)
26 PRK07868 acyl-CoA synthetase; 99.7 1.9E-16 4.1E-21 130.1 14.1 120 9-130 641-761 (994)
27 PRK08315 AMP-binding domain pr 99.7 2.8E-16 6.1E-21 121.8 14.4 123 8-130 234-358 (559)
28 PTZ00342 acyl-CoA synthetase; 99.7 1E-16 2.2E-21 128.1 12.1 116 12-130 346-503 (746)
29 PRK04319 acetyl-CoA synthetase 99.7 2.6E-16 5.6E-21 122.5 14.0 120 9-129 241-364 (570)
30 PRK12583 acyl-CoA synthetase; 99.7 2.4E-16 5.3E-21 122.1 13.8 123 9-131 237-361 (558)
31 PRK05605 long-chain-fatty-acid 99.7 2.2E-16 4.8E-21 122.9 13.6 117 13-130 262-378 (573)
32 TIGR03098 ligase_PEP_1 acyl-Co 99.7 3.7E-16 8.1E-21 119.8 14.6 120 9-130 197-317 (515)
33 PRK06187 long-chain-fatty-acid 99.7 2.9E-16 6.2E-21 120.4 13.6 121 8-130 202-323 (521)
34 TIGR02275 DHB_AMP_lig 2,3-dihy 99.7 3.2E-16 6.9E-21 120.9 13.8 117 9-126 219-337 (527)
35 PLN03052 acetate--CoA ligase; 99.7 2.6E-16 5.6E-21 125.7 13.4 118 9-127 392-511 (728)
36 PRK00174 acetyl-CoA synthetase 99.7 4.4E-16 9.6E-21 122.7 14.3 122 9-130 282-412 (637)
37 PRK13383 acyl-CoA synthetase; 99.7 4.5E-16 9.7E-21 119.8 13.2 119 10-130 213-334 (516)
38 PRK08180 feruloyl-CoA synthase 99.7 3.4E-16 7.4E-21 122.9 12.8 117 14-130 253-382 (614)
39 PLN02736 long-chain acyl-CoA s 99.7 4E-16 8.7E-21 123.3 13.1 119 9-130 257-418 (651)
40 PRK07008 long-chain-fatty-acid 99.7 4.8E-16 1E-20 120.3 13.2 120 8-129 213-334 (539)
41 PRK10524 prpE propionyl-CoA sy 99.7 3.7E-16 7.9E-21 123.0 12.7 119 8-127 269-394 (629)
42 PRK07787 acyl-CoA synthetase; 99.7 4.8E-16 1E-20 118.4 12.9 119 9-130 164-283 (471)
43 PRK06188 acyl-CoA synthetase; 99.7 4E-16 8.7E-21 120.2 12.5 117 9-128 204-321 (524)
44 PRK06087 short chain acyl-CoA 99.7 1.2E-15 2.6E-20 118.1 14.8 119 10-130 224-343 (547)
45 PTZ00237 acetyl-CoA synthetase 99.7 4.5E-16 9.7E-21 123.0 12.1 118 10-129 292-421 (647)
46 PRK03640 O-succinylbenzoic aci 99.7 1.3E-15 2.8E-20 116.1 14.2 116 9-128 177-293 (483)
47 PRK07638 acyl-CoA synthetase; 99.7 1.3E-15 2.7E-20 116.5 14.1 118 9-131 179-297 (487)
48 PLN02330 4-coumarate--CoA liga 99.7 1.1E-15 2.3E-20 118.5 13.2 116 14-129 228-345 (546)
49 TIGR01733 AA-adenyl-dom amino 99.7 1.1E-15 2.4E-20 114.0 12.9 119 8-130 155-277 (408)
50 PRK13391 acyl-CoA synthetase; 99.7 1.4E-15 3.1E-20 116.8 13.8 120 9-130 195-317 (511)
51 TIGR02262 benz_CoA_lig benzoat 99.7 1.3E-15 2.7E-20 117.0 13.3 122 8-130 197-320 (508)
52 PRK06710 long-chain-fatty-acid 99.7 8.9E-16 1.9E-20 119.3 12.5 116 14-130 250-365 (563)
53 PRK12406 long-chain-fatty-acid 99.7 1.4E-15 3E-20 116.8 13.3 121 8-130 190-313 (509)
54 TIGR03205 pimA dicarboxylate-- 99.7 2.1E-15 4.6E-20 116.7 14.2 116 14-130 239-354 (541)
55 PRK06018 putative acyl-CoA syn 99.7 1.4E-15 2.9E-20 117.8 13.0 119 8-129 214-334 (542)
56 PRK05852 acyl-CoA synthetase; 99.7 1.3E-15 2.8E-20 117.7 12.8 121 9-130 212-337 (534)
57 PRK07786 long-chain-fatty-acid 99.7 2.4E-15 5.3E-20 116.4 14.4 115 14-130 217-333 (542)
58 PRK06060 acyl-CoA synthetase; 99.7 1.7E-15 3.6E-20 120.7 13.7 119 9-129 182-302 (705)
59 PRK07514 malonyl-CoA synthase; 99.7 1.9E-15 4.2E-20 115.7 13.6 119 9-130 192-311 (504)
60 KOG1179 Very long-chain acyl-C 99.7 9.7E-16 2.1E-20 115.6 11.3 125 6-132 275-400 (649)
61 PRK06814 acylglycerophosphoeth 99.7 3.4E-15 7.4E-20 124.2 14.5 119 9-130 829-949 (1140)
62 PRK05620 long-chain-fatty-acid 99.7 2.3E-15 5E-20 117.4 12.7 119 9-129 219-339 (576)
63 PRK12467 peptide synthase; Pro 99.7 1.6E-15 3.4E-20 136.9 13.2 121 7-130 3271-3394(3956)
64 PRK08276 long-chain-fatty-acid 99.7 2.8E-15 6.1E-20 114.9 12.7 115 14-130 188-304 (502)
65 PRK08279 long-chain-acyl-CoA s 99.7 4.2E-15 9.2E-20 116.4 13.9 118 9-128 235-353 (600)
66 PRK05677 long-chain-fatty-acid 99.6 4.2E-15 9E-20 115.6 13.6 116 14-130 252-368 (562)
67 PRK10252 entF enterobactin syn 99.6 2E-15 4.3E-20 126.8 12.6 121 8-130 633-759 (1296)
68 KOG1175 Acyl-CoA synthetase [L 99.6 8E-16 1.7E-20 118.9 9.3 132 5-136 272-408 (626)
69 PRK06155 crotonobetaine/carnit 99.6 8.5E-15 1.9E-19 113.5 15.0 118 9-130 216-334 (542)
70 PRK13390 acyl-CoA synthetase; 99.6 3.6E-15 7.8E-20 114.3 12.6 120 9-130 190-312 (501)
71 PRK08308 acyl-CoA synthetase; 99.6 2.9E-15 6.3E-20 112.5 11.9 116 9-130 137-253 (414)
72 TIGR01734 D-ala-DACP-lig D-ala 99.6 3.8E-15 8.3E-20 114.0 12.8 118 9-127 177-298 (502)
73 TIGR02372 4_coum_CoA_lig 4-cou 99.6 3.5E-15 7.7E-20 111.4 11.9 109 14-130 139-247 (386)
74 PLN02614 long-chain acyl-CoA s 99.6 3E-15 6.4E-20 118.7 11.5 117 10-129 265-427 (666)
75 PRK04813 D-alanine--poly(phosp 99.6 7.2E-15 1.6E-19 112.4 13.0 118 9-127 179-300 (503)
76 PRK09088 acyl-CoA synthetase; 99.6 1.1E-14 2.4E-19 111.3 13.9 116 11-128 173-291 (488)
77 PRK12467 peptide synthase; Pro 99.6 3.8E-15 8.2E-20 134.5 12.9 122 7-130 1752-1877(3956)
78 PRK10946 entE enterobactin syn 99.6 5.2E-15 1.1E-19 114.5 11.8 119 8-127 217-339 (536)
79 PRK12492 long-chain-fatty-acid 99.6 1.2E-14 2.7E-19 113.0 13.9 116 14-130 259-375 (562)
80 PRK12316 peptide synthase; Pro 99.6 4.8E-15 1E-19 135.7 13.0 121 8-130 4729-4852(5163)
81 PRK07470 acyl-CoA synthetase; 99.6 6.7E-15 1.4E-19 113.5 12.1 117 10-129 202-321 (528)
82 PRK12316 peptide synthase; Pro 99.6 4.3E-15 9.4E-20 136.0 12.6 117 8-127 690-810 (5163)
83 PLN02861 long-chain-fatty-acid 99.6 3.2E-15 6.9E-20 118.4 10.4 114 14-130 267-425 (660)
84 PRK12582 acyl-CoA synthetase; 99.6 3.5E-15 7.7E-20 117.4 10.6 117 14-130 265-394 (624)
85 COG1022 FAA1 Long-chain acyl-C 99.6 4.3E-15 9.4E-20 115.4 10.8 128 11-142 230-406 (613)
86 PRK07798 acyl-CoA synthetase; 99.6 1.7E-14 3.6E-19 111.0 14.0 115 14-129 220-338 (533)
87 TIGR01923 menE O-succinylbenzo 99.6 8.6E-15 1.9E-19 110.2 12.1 114 8-130 146-260 (436)
88 PRK05857 acyl-CoA synthetase; 99.6 7.6E-15 1.6E-19 113.7 11.8 111 14-128 215-325 (540)
89 PRK09274 peptide synthase; Pro 99.6 3.8E-15 8.3E-20 115.5 10.1 115 8-130 209-332 (552)
90 PLN03102 acyl-activating enzym 99.6 1.3E-14 2.9E-19 113.3 12.4 112 14-128 228-339 (579)
91 TIGR03443 alpha_am_amid L-amin 99.6 9.2E-15 2E-19 123.6 12.0 118 8-129 450-571 (1389)
92 PRK06164 acyl-CoA synthetase; 99.6 2.3E-14 4.9E-19 110.9 13.1 118 9-130 217-336 (540)
93 PRK07867 acyl-CoA synthetase; 99.6 5.2E-14 1.1E-18 108.9 14.5 120 8-130 187-307 (529)
94 PRK05691 peptide synthase; Val 99.6 1.4E-14 3E-19 131.7 12.7 120 8-130 1308-1431(4334)
95 PRK08751 putative long-chain f 99.6 3.7E-14 8.1E-19 110.1 13.3 116 14-130 255-371 (560)
96 PRK07445 O-succinylbenzoic aci 99.6 1.3E-14 2.7E-19 110.5 9.8 113 10-128 157-269 (452)
97 PRK05851 long-chain-fatty-acid 99.6 9.1E-15 2E-19 112.9 9.1 122 8-130 187-320 (525)
98 PRK03584 acetoacetyl-CoA synth 99.6 8.3E-14 1.8E-18 110.2 14.1 118 8-127 299-424 (655)
99 PRK07059 Long-chain-fatty-acid 99.6 7.5E-14 1.6E-18 108.4 13.4 116 14-130 253-369 (557)
100 PRK08974 long-chain-fatty-acid 99.6 9.3E-14 2E-18 108.0 14.0 116 14-130 251-367 (560)
101 PRK13388 acyl-CoA synthetase; 99.6 8.2E-14 1.8E-18 108.0 13.6 120 8-130 185-305 (540)
102 PRK08008 caiC putative crotono 99.6 9.8E-14 2.1E-18 106.8 14.0 118 11-130 211-329 (517)
103 COG1021 EntE Peptide arylation 99.6 3.4E-15 7.3E-20 109.0 5.4 123 2-125 218-342 (542)
104 TIGR02155 PA_CoA_ligase phenyl 99.6 9.2E-14 2E-18 104.8 12.1 117 9-126 114-233 (422)
105 PRK05691 peptide synthase; Val 99.6 7.8E-14 1.7E-18 126.9 13.6 118 8-129 3904-4025(4334)
106 PRK07769 long-chain-fatty-acid 99.5 3.9E-14 8.6E-19 111.6 9.7 121 9-130 216-354 (631)
107 PLN02479 acetate-CoA ligase 99.5 1.7E-13 3.8E-18 106.7 12.8 115 10-127 232-348 (567)
108 PRK06178 acyl-CoA synthetase; 99.5 3E-13 6.6E-18 105.3 13.3 117 11-128 248-368 (567)
109 PRK08162 acyl-CoA synthetase; 99.5 4.9E-13 1.1E-17 103.5 13.7 115 10-127 219-334 (545)
110 PLN02430 long-chain-fatty-acid 99.5 2.3E-13 5E-18 107.9 11.7 116 11-129 263-424 (660)
111 PLN02387 long-chain-fatty-acid 99.5 1.6E-13 3.4E-18 109.4 10.5 119 10-130 288-462 (696)
112 TIGR01217 ac_ac_CoA_syn acetoa 99.5 4.5E-13 9.7E-18 106.2 13.0 117 8-126 300-424 (652)
113 PRK07824 O-succinylbenzoic aci 99.5 8.7E-13 1.9E-17 97.4 13.6 112 14-129 75-191 (358)
114 PTZ00216 acyl-CoA synthetase; 99.5 6.4E-13 1.4E-17 106.0 10.3 111 14-130 311-469 (700)
115 PRK12476 putative fatty-acid-- 99.4 5.5E-13 1.2E-17 104.9 8.8 117 11-129 232-364 (612)
116 PRK09029 O-succinylbenzoic aci 99.4 3.9E-12 8.4E-17 96.7 12.4 110 9-130 171-281 (458)
117 PRK05850 acyl-CoA synthetase; 99.4 1.1E-12 2.5E-17 102.3 9.2 114 14-128 208-334 (578)
118 KOG1256 Long-chain acyl-CoA sy 99.4 6.5E-12 1.4E-16 97.8 13.0 115 14-131 303-462 (691)
119 PRK07768 long-chain-fatty-acid 99.4 5.8E-12 1.3E-16 97.7 10.8 116 14-129 195-323 (545)
120 TIGR03335 F390_ftsA coenzyme F 99.4 7.9E-12 1.7E-16 95.1 10.6 115 9-126 125-242 (445)
121 PRK09192 acyl-CoA synthetase; 99.4 5.6E-12 1.2E-16 98.6 9.5 123 8-130 212-347 (579)
122 COG1541 PaaK Coenzyme F390 syn 99.0 2.6E-09 5.7E-14 80.0 9.0 119 8-128 128-250 (438)
123 COG1020 EntF Non-ribosomal pep 99.0 7.2E-09 1.6E-13 82.1 11.6 119 8-127 401-526 (642)
124 KOG1180 Acyl-CoA synthetase [L 99.0 4.6E-10 1E-14 85.4 4.3 119 10-130 275-444 (678)
125 TIGR02304 aden_form_hyp probab 98.9 6.6E-09 1.4E-13 78.7 7.5 80 48-130 174-253 (430)
126 TIGR03089 conserved hypothetic 98.9 4.1E-09 8.9E-14 73.6 5.9 55 8-63 172-227 (227)
127 PTZ00297 pantothenate kinase; 98.4 1.5E-06 3.2E-11 74.3 8.9 60 14-77 646-705 (1452)
128 PF04443 LuxE: Acyl-protein sy 94.8 0.3 6.6E-06 36.8 8.4 96 35-130 161-274 (365)
129 KOG1178 Non-ribosomal peptide 87.3 3.2 6.9E-05 35.6 7.1 98 32-129 255-369 (1032)
130 TIGR02370 pyl_corrinoid methyl 80.6 16 0.00034 25.0 7.5 88 14-104 85-182 (197)
131 PRK02261 methylaspartate mutas 79.3 7.5 0.00016 25.0 5.1 46 23-68 15-61 (137)
132 PF06543 Lac_bphage_repr: Lact 77.1 2 4.4E-05 22.1 1.5 23 90-112 22-44 (49)
133 cd02070 corrinoid_protein_B12- 75.8 23 0.00049 24.3 7.0 88 15-103 85-179 (201)
134 cd02069 methionine_synthase_B1 73.8 27 0.00059 24.3 7.0 90 15-106 91-186 (213)
135 PF00818 Ice_nucleation: Ice n 73.7 1.2 2.7E-05 17.4 0.2 8 119-126 1-8 (16)
136 PF00501 AMP-binding: AMP-bind 67.4 34 0.00075 25.6 7.0 57 9-67 41-99 (417)
137 PF03808 Glyco_tran_WecB: Glyc 66.5 14 0.00031 24.6 4.2 14 62-75 51-64 (172)
138 PRK07788 acyl-CoA synthetase; 65.4 59 0.0013 25.6 8.1 65 10-76 95-161 (549)
139 PRK11904 bifunctional proline 63.8 78 0.0017 27.8 8.8 56 14-69 686-748 (1038)
140 TIGR01733 AA-adenyl-dom amino 63.0 46 0.001 24.7 6.9 65 9-75 20-86 (408)
141 PLN03102 acyl-activating enzym 62.6 65 0.0014 25.7 7.9 62 10-73 60-123 (579)
142 KOG1177 Long chain fatty acid 61.5 66 0.0014 25.8 7.3 88 7-96 95-198 (596)
143 cd07085 ALDH_F6_MMSDH Methylma 61.3 78 0.0017 24.8 10.3 47 14-60 138-189 (478)
144 PRK08316 acyl-CoA synthetase; 60.8 66 0.0014 24.9 7.6 64 10-75 57-122 (523)
145 cd07100 ALDH_SSADH1_GabD1 Myco 59.7 79 0.0017 24.4 8.8 47 14-60 98-149 (429)
146 PLN02736 long-chain acyl-CoA s 59.6 91 0.002 25.4 8.3 67 9-77 98-166 (651)
147 PRK08314 long-chain-fatty-acid 59.0 83 0.0018 24.6 7.9 65 10-76 57-123 (546)
148 TIGR01722 MMSDH methylmalonic 58.8 87 0.0019 24.6 10.3 65 14-78 138-212 (477)
149 PRK11809 putA trifunctional tr 57.8 1.2E+02 0.0026 27.5 9.0 56 14-69 770-832 (1318)
150 PRK07514 malonyl-CoA synthase; 56.8 89 0.0019 24.1 7.7 64 10-75 49-114 (504)
151 PRK13383 acyl-CoA synthetase; 56.8 93 0.002 24.3 8.0 64 10-75 81-146 (516)
152 PLN02620 indole-3-acetic acid- 56.3 36 0.00077 27.8 5.4 41 86-126 303-344 (612)
153 KOG1256 Long-chain acyl-CoA sy 54.8 1.3E+02 0.0027 25.2 11.5 95 9-107 128-224 (691)
154 PTZ00237 acetyl-CoA synthetase 53.8 81 0.0017 25.7 7.2 59 9-69 112-172 (647)
155 PRK11905 bifunctional proline 53.5 1.4E+02 0.0031 26.7 8.9 47 14-60 678-729 (1208)
156 cd07109 ALDH_AAS00426 Uncharac 53.2 1.1E+02 0.0023 23.9 10.2 47 14-60 119-170 (454)
157 PLN02574 4-coumarate--CoA liga 52.8 1.1E+02 0.0023 24.3 7.6 66 9-76 87-154 (560)
158 TIGR01501 MthylAspMutase methy 52.6 60 0.0013 20.9 5.9 95 23-124 13-119 (134)
159 PF03321 GH3: GH3 auxin-respon 52.4 14 0.00031 29.4 2.7 41 86-126 266-307 (528)
160 TIGR03098 ligase_PEP_1 acyl-Co 52.3 1.1E+02 0.0023 23.7 7.7 64 10-75 46-111 (515)
161 TIGR01780 SSADH succinate-semi 51.0 1.2E+02 0.0025 23.7 9.9 48 14-61 119-171 (448)
162 cd07131 ALDH_AldH-CAJ73105 Unc 50.8 1.2E+02 0.0026 23.8 10.0 47 14-60 137-188 (478)
163 PLN02654 acetate-CoA ligase 50.8 1E+02 0.0022 25.2 7.4 60 9-70 140-201 (666)
164 PF02310 B12-binding: B12 bind 50.6 55 0.0012 19.8 6.2 88 20-109 9-101 (121)
165 PLN02246 4-coumarate--CoA liga 50.1 1.1E+02 0.0024 23.9 7.3 65 9-75 70-136 (537)
166 cd07078 ALDH NAD(P)+ dependent 49.7 1.2E+02 0.0025 23.3 8.8 48 14-61 98-150 (432)
167 TIGR02316 propion_prpE propion 49.2 1.1E+02 0.0024 24.7 7.3 59 9-69 103-163 (628)
168 PRK05605 long-chain-fatty-acid 48.9 1.3E+02 0.0029 23.8 8.0 64 10-75 78-143 (573)
169 PRK06155 crotonobetaine/carnit 48.4 1.3E+02 0.0029 23.7 8.2 66 10-77 67-134 (542)
170 TIGR01217 ac_ac_CoA_syn acetoa 48.0 1.1E+02 0.0024 24.9 7.1 59 9-69 134-194 (652)
171 PRK08751 putative long-chain f 47.6 1.3E+02 0.0029 23.6 7.4 63 9-73 71-135 (560)
172 COG5012 Predicted cobalamin bi 47.3 1E+02 0.0022 21.9 7.7 85 21-107 114-205 (227)
173 PRK09274 peptide synthase; Pro 47.2 1.2E+02 0.0026 23.9 7.1 58 10-69 62-121 (552)
174 PLN02247 indole-3-acetic acid- 47.1 59 0.0013 26.6 5.3 45 87-131 293-339 (606)
175 PRK06087 short chain acyl-CoA 47.0 1.1E+02 0.0025 23.9 7.0 58 9-68 69-128 (547)
176 cd07102 ALDH_EDX86601 Uncharac 46.7 1.4E+02 0.003 23.2 9.8 47 14-60 118-169 (452)
177 PLN02419 methylmalonate-semial 46.5 1.7E+02 0.0036 24.1 10.5 47 14-60 251-302 (604)
178 PRK08276 long-chain-fatty-acid 46.2 1.4E+02 0.003 23.1 7.5 64 10-75 32-97 (502)
179 PRK05620 long-chain-fatty-acid 46.1 1.5E+02 0.0033 23.5 7.9 65 9-75 59-125 (576)
180 TIGR02082 metH 5-methyltetrahy 45.9 1.6E+02 0.0034 26.4 7.9 82 23-106 744-830 (1178)
181 PLN03052 acetate--CoA ligase; 45.8 1.4E+02 0.0029 25.0 7.4 60 9-70 228-289 (728)
182 PRK04319 acetyl-CoA synthetase 45.8 1.2E+02 0.0027 24.0 7.0 65 9-75 93-159 (570)
183 cd07083 ALDH_P5CDH ALDH subfam 45.7 1.5E+02 0.0033 23.5 9.7 47 14-60 156-207 (500)
184 PRK09490 metH B12-dependent me 45.6 1.7E+02 0.0036 26.5 8.0 79 23-103 763-846 (1229)
185 cd07124 ALDH_PutA-P5CDH-RocA D 45.6 1.5E+02 0.0033 23.5 9.7 47 14-60 168-219 (512)
186 TIGR02188 Ac_CoA_lig_AcsA acet 45.5 1.2E+02 0.0026 24.4 7.0 60 9-70 108-169 (625)
187 PRK08162 acyl-CoA synthetase; 45.4 1.4E+02 0.0031 23.3 7.3 64 10-75 64-129 (545)
188 cd07103 ALDH_F5_SSADH_GabD Mit 45.2 1.4E+02 0.0031 23.1 9.4 47 14-60 119-170 (451)
189 PRK07059 Long-chain-fatty-acid 44.8 1.5E+02 0.0033 23.3 8.0 62 10-73 69-132 (557)
190 PRK07656 long-chain-fatty-acid 44.7 1.4E+02 0.0031 22.9 7.9 63 10-74 51-115 (513)
191 PRK03584 acetoacetyl-CoA synth 44.5 1.4E+02 0.0031 24.2 7.3 60 9-70 134-195 (655)
192 PLN02278 succinic semialdehyde 44.3 1.6E+02 0.0035 23.4 9.3 46 14-59 162-212 (498)
193 PF00171 Aldedh: Aldehyde dehy 44.2 1.5E+02 0.0033 23.1 7.4 75 14-96 128-213 (462)
194 PRK06187 long-chain-fatty-acid 44.1 1.5E+02 0.0032 22.9 8.1 64 10-75 52-117 (521)
195 PRK05852 acyl-CoA synthetase; 44.1 1.4E+02 0.003 23.4 7.0 56 10-67 64-121 (534)
196 cd07141 ALDH_F1AB_F2_RALDH1 NA 44.0 1.6E+02 0.0034 23.2 10.5 47 14-60 147-198 (481)
197 PRK00174 acetyl-CoA synthetase 43.7 1.5E+02 0.0032 24.0 7.3 59 9-69 118-178 (637)
198 cd07110 ALDH_F10_BADH Arabidop 43.5 1.6E+02 0.0034 23.0 10.1 47 14-60 122-173 (456)
199 PRK05857 acyl-CoA synthetase; 43.1 1.4E+02 0.003 23.6 6.8 61 9-71 61-123 (540)
200 cd06534 ALDH-SF NAD(P)+-depend 42.9 1.4E+02 0.003 22.3 9.1 48 14-61 94-146 (367)
201 PRK05677 long-chain-fatty-acid 42.7 1.7E+02 0.0037 23.2 7.6 62 10-73 71-134 (562)
202 PTZ00342 acyl-CoA synthetase; 42.6 2.1E+02 0.0045 24.1 9.7 77 14-96 131-208 (746)
203 cd07118 ALDH_SNDH Gluconobacte 42.6 1.6E+02 0.0035 22.9 8.7 47 14-60 121-172 (454)
204 TIGR01923 menE O-succinylbenzo 42.2 1.5E+02 0.0032 22.3 7.3 59 10-70 20-80 (436)
205 PLN02860 o-succinylbenzoate-Co 42.1 1.5E+02 0.0033 23.4 7.0 60 9-70 52-113 (563)
206 KOG3628 Predicted AMP-binding 42.0 51 0.0011 29.1 4.3 92 14-105 311-416 (1363)
207 PF06200 tify: tify domain; I 42.0 43 0.00093 16.2 2.5 24 35-58 9-32 (36)
208 PRK06839 acyl-CoA synthetase; 41.9 1.6E+02 0.0034 22.6 8.6 65 9-75 48-114 (496)
209 cd07147 ALDH_F21_RNP123 Aldehy 41.0 1.7E+02 0.0037 22.7 10.2 47 14-60 125-176 (452)
210 cd02071 MM_CoA_mut_B12_BD meth 40.3 90 0.002 19.3 7.8 84 23-110 11-101 (122)
211 PRK10524 prpE propionyl-CoA sy 40.0 1.8E+02 0.0038 23.5 7.1 59 9-69 104-164 (629)
212 cd07138 ALDH_CddD_SSP0762 Rhod 40.0 1.8E+02 0.0039 22.7 10.1 47 14-60 132-183 (466)
213 PRK13252 betaine aldehyde dehy 39.9 1.9E+02 0.004 22.8 10.2 47 14-60 144-195 (488)
214 PLN02466 aldehyde dehydrogenas 39.5 2E+02 0.0044 23.1 10.0 47 14-60 197-248 (538)
215 PRK12583 acyl-CoA synthetase; 39.5 1.9E+02 0.004 22.7 7.1 59 10-70 66-126 (558)
216 cd07097 ALDH_KGSADH-YcbD Bacil 39.4 1.9E+02 0.004 22.7 9.4 47 14-60 137-188 (473)
217 PRK12492 long-chain-fatty-acid 39.4 1.6E+02 0.0035 23.3 6.8 60 10-71 71-132 (562)
218 PRK03137 1-pyrroline-5-carboxy 39.1 2E+02 0.0043 22.9 10.0 47 14-60 173-224 (514)
219 PRK06334 long chain fatty acid 39.0 1.9E+02 0.0042 22.8 7.5 60 14-75 68-128 (539)
220 PLN02614 long-chain acyl-CoA s 39.0 2.2E+02 0.0047 23.4 8.6 66 9-76 99-166 (666)
221 cd07142 ALDH_F2BC Arabidosis a 39.0 1.9E+02 0.0041 22.7 9.9 47 14-60 143-194 (476)
222 PF04915 DltD_N: DltD N-termin 38.2 23 0.00051 19.5 1.4 15 112-126 26-40 (62)
223 TIGR01237 D1pyr5carbox2 delta- 38.2 2.1E+02 0.0044 22.8 9.3 46 14-59 169-219 (511)
224 cd07111 ALDH_F16 Aldehyde dehy 38.1 2E+02 0.0043 22.7 9.9 49 12-60 146-200 (480)
225 TIGR03240 arg_catab_astD succi 37.9 2E+02 0.0044 22.7 10.4 47 14-60 134-185 (484)
226 cd07092 ALDH_ABALDH-YdcW Esche 37.8 1.9E+02 0.0042 22.4 8.7 46 14-59 120-170 (450)
227 PF06871 TraH_2: TraH_2; Inte 37.8 37 0.00079 23.2 2.4 28 34-61 35-63 (206)
228 cd07148 ALDH_RL0313 Uncharacte 37.8 2E+02 0.0042 22.5 9.9 47 14-60 126-177 (455)
229 PRK08008 caiC putative crotono 37.6 1.9E+02 0.0042 22.4 7.9 63 10-74 58-122 (517)
230 COG1922 WecG Teichoic acid bio 37.5 1.6E+02 0.0034 21.3 6.7 81 32-117 57-138 (253)
231 cd07088 ALDH_LactADH-AldA Esch 37.3 2E+02 0.0043 22.5 9.0 47 14-60 135-186 (468)
232 PRK08974 long-chain-fatty-acid 37.3 2E+02 0.0043 22.7 7.0 60 10-71 70-131 (560)
233 PLN02861 long-chain-fatty-acid 36.9 2.4E+02 0.0051 23.1 8.6 66 9-76 97-164 (660)
234 PLN02387 long-chain-fatty-acid 36.7 2.4E+02 0.0053 23.3 9.8 82 9-96 126-209 (696)
235 cd07094 ALDH_F21_LactADH-like 36.6 2E+02 0.0044 22.3 10.1 47 14-60 125-176 (453)
236 cd07143 ALDH_AldA_AN0554 Asper 35.8 2.2E+02 0.0047 22.5 9.9 47 14-60 146-197 (481)
237 cd07089 ALDH_CddD-AldA-like Rh 35.8 2.1E+02 0.0046 22.3 10.0 47 14-60 125-176 (459)
238 PRK06164 acyl-CoA synthetase; 35.3 2E+02 0.0044 22.5 6.7 59 10-70 56-116 (540)
239 PRK08315 AMP-binding domain pr 35.2 2.2E+02 0.0048 22.4 7.1 59 10-70 64-124 (559)
240 PRK12406 long-chain-fatty-acid 35.2 2.1E+02 0.0046 22.1 7.6 64 10-75 32-97 (509)
241 PRK13388 acyl-CoA synthetase; 35.1 2.3E+02 0.0049 22.4 7.9 64 10-75 47-113 (540)
242 COG4126 Hydantoin racemase [Am 35.0 1.3E+02 0.0028 21.3 4.8 88 32-121 102-205 (230)
243 PRK07529 AMP-binding domain pr 34.8 2E+02 0.0044 23.3 6.7 57 9-68 78-136 (632)
244 KOG4449 Translocase of outer m 34.7 63 0.0014 17.0 2.5 26 98-123 2-27 (53)
245 PLN02766 coniferyl-aldehyde de 34.6 2.4E+02 0.0051 22.5 10.4 47 14-60 160-211 (501)
246 PRK05850 acyl-CoA synthetase; 34.6 2.3E+02 0.005 22.5 7.0 60 14-75 60-123 (578)
247 PLN02479 acetate-CoA ligase 34.3 2.4E+02 0.0051 22.4 8.4 62 10-73 66-129 (567)
248 PRK07867 acyl-CoA synthetase; 34.3 2.3E+02 0.005 22.3 8.4 62 11-74 51-114 (529)
249 PRK09088 acyl-CoA synthetase; 34.0 2.2E+02 0.0047 21.9 7.2 58 10-69 43-102 (488)
250 cd07105 ALDH_SaliADH Salicylal 34.0 2.2E+02 0.0048 22.0 9.5 47 14-60 100-151 (432)
251 cd07125 ALDH_PutA-P5CDH Delta( 33.9 2.4E+02 0.0053 22.5 9.8 47 14-60 169-220 (518)
252 cd07140 ALDH_F1L_FTFDH 10-form 33.9 2.4E+02 0.0052 22.3 10.1 47 14-60 149-200 (486)
253 PLN02249 indole-3-acetic acid- 33.8 2.7E+02 0.0058 22.9 7.5 35 89-126 307-342 (597)
254 TIGR03250 PhnAcAld_DH putative 33.7 2.4E+02 0.0051 22.2 10.0 47 14-60 141-192 (472)
255 cd07144 ALDH_ALD2-YMR170C Sacc 33.5 2.4E+02 0.0052 22.2 9.6 47 14-60 146-197 (484)
256 PRK07798 acyl-CoA synthetase; 33.4 2.3E+02 0.005 22.0 8.3 65 10-76 49-115 (533)
257 cd07113 ALDH_PADH_NahF Escheri 32.3 2.5E+02 0.0054 22.1 10.0 47 14-60 144-195 (477)
258 PRK10090 aldehyde dehydrogenas 32.1 2.4E+02 0.0052 21.8 10.1 47 14-60 73-124 (409)
259 PRK09457 astD succinylglutamic 32.0 2.6E+02 0.0056 22.1 10.6 47 14-60 136-187 (487)
260 cd07090 ALDH_F9_TMBADH NAD+-de 31.8 2.5E+02 0.0054 21.9 8.9 47 14-60 118-169 (457)
261 PLN02330 4-coumarate--CoA liga 31.0 2.6E+02 0.0057 22.0 6.9 63 10-74 76-140 (546)
262 PF03702 UPF0075: Uncharacteri 30.9 73 0.0016 24.3 3.4 28 89-116 286-313 (364)
263 PRK13295 cyclohexanecarboxylat 30.9 2.7E+02 0.0058 22.0 7.1 59 10-70 76-136 (547)
264 TIGR02262 benz_CoA_lig benzoat 30.9 2.5E+02 0.0055 21.7 8.2 64 10-75 51-116 (508)
265 PRK08279 long-chain-acyl-CoA s 30.7 2.8E+02 0.0061 22.2 8.4 64 10-75 83-148 (600)
266 cd07139 ALDH_AldA-Rv0768 Mycob 30.5 2.7E+02 0.0057 21.8 10.5 47 14-60 139-190 (471)
267 PRK06710 long-chain-fatty-acid 30.3 2.7E+02 0.006 21.9 6.7 61 10-72 70-132 (563)
268 PRK11121 nrdG anaerobic ribonu 30.2 1.2E+02 0.0026 19.8 4.0 34 91-124 69-111 (154)
269 PRK06178 acyl-CoA synthetase; 29.9 2.8E+02 0.0061 21.9 7.7 65 10-76 79-145 (567)
270 PRK09406 gabD1 succinic semial 29.9 2.7E+02 0.0059 21.8 9.7 47 14-60 125-176 (457)
271 PRK06018 putative acyl-CoA syn 29.8 2.8E+02 0.006 21.8 7.0 64 10-75 60-125 (542)
272 PF00389 2-Hacid_dh: D-isomer 29.6 1.1E+02 0.0024 19.1 3.7 74 39-121 18-91 (133)
273 cd07116 ALDH_ACDHII-AcoD Ralst 29.3 2.8E+02 0.0062 21.8 10.0 33 14-46 138-171 (479)
274 cd07095 ALDH_SGSD_AstD N-succi 29.3 2.7E+02 0.0059 21.6 10.2 47 14-60 99-150 (431)
275 PF06183 DinI: DinI-like famil 29.2 30 0.00064 19.2 0.9 25 99-123 9-33 (65)
276 cd07114 ALDH_DhaS Uncharacteri 29.1 2.8E+02 0.006 21.6 8.8 47 14-60 121-172 (457)
277 cd07119 ALDH_BADH-GbsA Bacillu 29.0 2.9E+02 0.0062 21.7 10.0 47 14-60 136-187 (482)
278 PRK07470 acyl-CoA synthetase; 28.9 2.8E+02 0.0061 21.6 8.3 62 10-73 53-116 (528)
279 PRK13968 putative succinate se 28.1 3E+02 0.0064 21.6 9.6 47 14-60 128-179 (462)
280 cd07123 ALDH_F4-17_P5CDH Delta 27.9 3.2E+02 0.0069 21.9 10.1 47 14-60 172-222 (522)
281 COG4026 Uncharacterized protei 27.9 2.3E+02 0.0049 20.2 6.1 61 47-111 16-82 (290)
282 TIGR02299 HpaE 5-carboxymethyl 27.7 3.1E+02 0.0066 21.6 9.8 47 14-60 137-188 (488)
283 COG0365 Acs Acyl-coenzyme A sy 27.7 2.2E+02 0.0047 23.1 5.6 65 9-75 61-126 (528)
284 PF07085 DRTGG: DRTGG domain; 27.4 1E+02 0.0022 18.4 3.1 25 91-117 65-89 (105)
285 PLN02467 betaine aldehyde dehy 27.3 3.2E+02 0.007 21.8 10.6 47 14-60 153-204 (503)
286 cd07120 ALDH_PsfA-ACA09737 Pse 27.2 3.1E+02 0.0067 21.5 9.4 46 14-59 119-169 (455)
287 PRK13509 transcriptional repre 27.1 2.3E+02 0.0051 20.1 5.6 54 36-97 91-144 (251)
288 PRK11241 gabD succinate-semial 26.9 3.2E+02 0.007 21.6 9.5 47 14-60 148-199 (482)
289 TIGR00696 wecB_tagA_cpsF bacte 26.8 1E+02 0.0022 20.8 3.3 58 61-123 50-111 (177)
290 PRK15398 aldehyde dehydrogenas 26.6 3.2E+02 0.007 21.5 9.2 45 14-58 131-180 (465)
291 PRK12582 acyl-CoA synthetase; 26.4 3.5E+02 0.0075 21.9 6.7 58 9-68 100-164 (624)
292 KOG2531 Sugar (pentulose and h 26.0 2.5E+02 0.0054 22.5 5.4 37 87-125 442-478 (545)
293 TIGR03208 cyc_hxne_CoA_lg cycl 25.9 3.3E+02 0.0071 21.4 7.0 59 10-70 74-134 (538)
294 cd07091 ALDH_F1-2_Ald2-like AL 25.9 3.3E+02 0.0071 21.4 9.9 47 14-60 143-194 (476)
295 cd06533 Glyco_transf_WecG_TagA 25.5 1.8E+02 0.0038 19.3 4.2 68 51-122 36-109 (171)
296 PRK13382 acyl-CoA synthetase; 25.3 3.4E+02 0.0074 21.4 8.4 62 10-73 89-152 (537)
297 PRK10411 DNA-binding transcrip 25.3 2.5E+02 0.0054 19.8 7.9 85 34-126 88-180 (240)
298 PRK09192 acyl-CoA synthetase; 25.2 3.5E+02 0.0076 21.5 8.2 64 10-75 70-142 (579)
299 PRK07445 O-succinylbenzoic aci 24.7 3.3E+02 0.0071 21.0 6.5 54 14-69 46-100 (452)
300 PRK13391 acyl-CoA synthetase; 24.6 3.4E+02 0.0073 21.1 7.9 64 10-75 45-110 (511)
301 cd07126 ALDH_F12_P5CDH Delta(1 24.6 3.6E+02 0.0079 21.5 10.8 47 14-60 144-195 (489)
302 cd07149 ALDH_y4uC Uncharacteri 24.4 3.4E+02 0.0073 21.0 10.0 47 14-60 125-176 (453)
303 PRK07188 nicotinate phosphorib 24.4 1.8E+02 0.0039 22.1 4.4 49 68-123 262-310 (352)
304 cd07082 ALDH_F11_NP-GAPDH NADP 24.3 3.5E+02 0.0076 21.2 10.6 47 14-60 143-194 (473)
305 PF02776 TPP_enzyme_N: Thiamin 24.0 86 0.0019 20.6 2.5 29 50-78 4-37 (172)
306 PRK10597 DNA damage-inducible 24.0 58 0.0013 19.0 1.5 26 98-123 20-47 (81)
307 TIGR03845 sulfopyru_alph sulfo 24.0 76 0.0016 20.8 2.2 19 51-69 2-20 (157)
308 PRK06188 acyl-CoA synthetase; 23.9 3.5E+02 0.0076 21.0 7.1 59 10-70 58-118 (524)
309 PF10006 DUF2249: Uncharacteri 23.9 1.4E+02 0.003 16.3 4.2 34 29-62 16-50 (69)
310 PRK07787 acyl-CoA synthetase; 23.5 3.4E+02 0.0075 20.8 6.7 54 14-69 46-100 (471)
311 COG0743 Dxr 1-deoxy-D-xylulose 23.3 3.5E+02 0.0077 20.9 5.7 87 14-107 91-184 (385)
312 PRK03640 O-succinylbenzoic aci 23.2 3.5E+02 0.0075 20.7 8.0 61 10-72 48-110 (483)
313 PF13213 DUF4021: Protein of u 23.1 33 0.00072 17.4 0.3 10 117-126 27-36 (46)
314 TIGR02278 PaaN-DH phenylacetic 23.1 4.5E+02 0.0097 21.9 8.3 47 14-60 146-197 (663)
315 KOG1176 Acyl-CoA synthetase [L 23.0 4.1E+02 0.009 21.5 6.8 65 11-77 69-135 (537)
316 PRK11563 bifunctional aldehyde 22.9 4.5E+02 0.0097 21.9 8.7 47 14-60 150-201 (675)
317 PRK09407 gabD2 succinic semial 22.9 1.9E+02 0.0042 23.1 4.6 47 14-60 156-207 (524)
318 KOG3628 Predicted AMP-binding 22.8 4.7E+02 0.01 23.7 6.8 96 16-111 987-1092(1363)
319 TIGR01734 D-ala-DACP-lig D-ala 22.7 3.6E+02 0.0078 20.7 6.5 59 10-70 46-106 (502)
320 TIGR01238 D1pyr5carbox3 delta- 22.7 4E+02 0.0086 21.2 10.1 47 14-60 162-213 (500)
321 PRK09847 gamma-glutamyl-gamma- 22.7 3.9E+02 0.0085 21.2 9.9 47 14-60 159-210 (494)
322 PRK07008 long-chain-fatty-acid 22.4 3.9E+02 0.0084 21.0 7.7 62 10-73 60-123 (539)
323 cd07145 ALDH_LactADH_F420-Bios 22.3 3.8E+02 0.0082 20.9 9.0 47 14-60 125-176 (456)
324 cd07101 ALDH_SSADH2_GabD2 Myco 22.2 2.3E+02 0.0051 22.0 4.9 47 14-60 120-171 (454)
325 PRK07638 acyl-CoA synthetase; 22.0 3.7E+02 0.0081 20.7 6.8 56 12-69 49-105 (487)
326 TIGR01236 D1pyr5carbox1 delta- 21.9 4.3E+02 0.0093 21.3 10.1 47 14-60 172-222 (533)
327 TIGR02482 PFKA_ATP 6-phosphofr 21.7 2.1E+02 0.0045 21.2 4.3 45 14-59 160-206 (301)
328 cd07086 ALDH_F7_AASADH-like NA 21.3 4.1E+02 0.009 20.9 8.4 47 14-60 135-186 (478)
329 cd07150 ALDH_VaniDH_like Pseud 21.2 4E+02 0.0086 20.7 8.9 47 14-60 121-172 (451)
330 PLN02430 long-chain-fatty-acid 21.2 4.7E+02 0.01 21.5 8.5 65 10-76 97-163 (660)
331 COG4820 EutJ Ethanolamine util 21.2 3E+02 0.0064 19.5 4.6 72 48-120 185-258 (277)
332 cd07128 ALDH_MaoC-N N-terminal 21.1 4.4E+02 0.0096 21.1 8.4 47 14-60 146-197 (513)
333 PRK04813 D-alanine--poly(phosp 20.9 3.9E+02 0.0085 20.5 6.7 58 10-69 48-107 (503)
334 PRK08633 2-acyl-glycerophospho 20.9 5.7E+02 0.012 22.4 7.9 61 14-76 666-727 (1146)
335 PRK13390 acyl-CoA synthetase; 20.7 4E+02 0.0088 20.6 7.0 59 10-70 45-105 (501)
336 COG1167 ARO8 Transcriptional r 20.7 3.1E+02 0.0068 21.5 5.3 23 48-70 213-235 (459)
337 cd00763 Bacterial_PFK Phosphof 20.6 2.2E+02 0.0048 21.2 4.3 44 15-59 161-206 (317)
338 PRK13805 bifunctional acetalde 20.6 5.6E+02 0.012 22.1 7.1 45 14-58 110-159 (862)
339 PRK07786 long-chain-fatty-acid 20.5 4.3E+02 0.0093 20.8 7.9 62 10-73 63-126 (542)
340 PF04016 DUF364: Domain of unk 20.3 1E+02 0.0022 20.0 2.2 38 86-123 60-97 (147)
341 PF00455 DeoRC: DeoR C termina 20.2 2.7E+02 0.0058 18.2 7.7 83 35-125 16-106 (161)
342 PF14617 CMS1: U3-containing 9 20.1 3.3E+02 0.0072 19.6 4.9 49 49-100 165-213 (252)
No 1
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=149.26 Aligned_cols=131 Identities=40% Similarity=0.574 Sum_probs=112.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
|+.++.+|++|++|+...+...+..|++++..++++++.+++.+++|++|++.++|+++..+++.+....++++++|.+.
T Consensus 226 ~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~ 305 (537)
T KOG1176|consen 226 DVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVL 305 (537)
T ss_pred ceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEE
Confidence 99999999999999966555577777777777889999999999999999999999999999999877778999999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccccCC-CCCceeEE
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK-RFDEFCIF 144 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~~ 144 (149)
+||+++++++.+++++++|...+.++||+||+++..+.+...+ ...+++..
T Consensus 306 ~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~ 357 (537)
T KOG1176|consen 306 SGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGR 357 (537)
T ss_pred ecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCc
Confidence 9999999999999999999889999999999995554433333 35555543
No 2
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.87 E-value=2.7e-21 Score=147.61 Aligned_cols=122 Identities=25% Similarity=0.278 Sum_probs=110.4
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--C-CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~-~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+.+.+ |++++..++.|+.|.++.++++|.+|+++++.+. + +++++++.++++++|.++..|+.++.+.+.....+
T Consensus 207 ~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~ 286 (528)
T COG0365 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEP 286 (528)
T ss_pred hhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccc
Confidence 345556 9999999999999998889999999999999863 2 49999999999999999999999999998876567
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.++++||.+.+.|||++++.++++.+.++ +++.+.||+||++....
T Consensus 287 ~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~ 332 (528)
T COG0365 287 YDLSSLRVLGSAGEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFI 332 (528)
T ss_pred ccchhheeeeccCCCCCHHHHHHHHHHhC-CCEeccccccccCcccc
Confidence 89999999999999999999999999998 99999999999994433
No 3
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=99.86 E-value=5.7e-21 Score=141.22 Aligned_cols=126 Identities=22% Similarity=0.290 Sum_probs=114.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+|+.+ +|++++.|++|++|+....++++..|++++++ +.++++..++.++++++|.++++|+++..+++.+.....+
T Consensus 269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~ 348 (596)
T KOG1177|consen 269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD 348 (596)
T ss_pred HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence 357777 79999999999999889999999999999997 5799999999999999999999999999999999888899
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY 133 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 133 (149)
++++|.+..||+++++++.+.+.+...-..+...||+||++.+.+...
T Consensus 349 ~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~ 396 (596)
T KOG1177|consen 349 LSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSL 396 (596)
T ss_pred hhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeec
Confidence 999999999999999999999988665456888999999996665443
No 4
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=5.8e-19 Score=136.59 Aligned_cols=122 Identities=34% Similarity=0.404 Sum_probs=108.8
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++ |++++++|++|++|+...++.++..|+++++.+ +++++.+++.+.++++|++.++|+++..+++++.....++.
T Consensus 211 ~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~ 290 (534)
T COG0318 211 LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLS 290 (534)
T ss_pred CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccc
Confidence 566 889999999999999777777899999999997 69999999999999999999999999999998776666666
Q ss_pred C-ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003 88 S-LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND 132 (149)
Q Consensus 88 ~-lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 132 (149)
+ +|.+++||+++++++++++++.++..++.++||+||++..++..
T Consensus 291 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 336 (534)
T COG0318 291 SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTIN 336 (534)
T ss_pred cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecC
Confidence 5 99999999999999999999999856799999999998655433
No 5
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.81 E-value=8.3e-19 Score=135.76 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=107.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
++.++ |++++.+|++|++|+...++.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+++.+.....++
T Consensus 219 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 298 (539)
T PRK06334 219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCL 298 (539)
T ss_pred cCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccccc
Confidence 44555 999999999999998666789999999998875 5799999999999999999999999999987665455678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++.+++.++++.||+||++..++
T Consensus 299 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 342 (539)
T PRK06334 299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVIT 342 (539)
T ss_pred ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEE
Confidence 89999999999999999999999997789999999999985544
No 6
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.78 E-value=4.1e-18 Score=131.96 Aligned_cols=120 Identities=24% Similarity=0.318 Sum_probs=105.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~ 85 (149)
+++.+ |+++...|++|++|+ ..++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.... ...+
T Consensus 243 ~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 321 (549)
T PRK07788 243 VPFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD 321 (549)
T ss_pred CCCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC
Confidence 34555 899999999999998 5677899999999999889999999999999999999999999999876543 4456
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||+++++++.+++++.++ .++++.||+||++..+.
T Consensus 322 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~ 365 (549)
T PRK07788 322 TSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATI 365 (549)
T ss_pred CCceeEEEEeCCCCCHHHHHHHHHHhC-ccceeccCcchhchhhc
Confidence 789999999999999999999999987 78999999999885544
No 7
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.78 E-value=8.3e-18 Score=129.99 Aligned_cols=121 Identities=26% Similarity=0.402 Sum_probs=108.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
.+++. |++++.+|++|..|+...++.++..|+++++.+.++++.+++.++++++|++.++|+++..+...+.....+++
T Consensus 226 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~ 305 (546)
T PRK08314 226 SNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLS 305 (546)
T ss_pred hCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCch
Confidence 34555 99999999999999978888999999999999989999999999999999999999999999877655556778
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++.+.++ .++++.||+||++....
T Consensus 306 ~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 347 (546)
T PRK08314 306 SLRYIGGGGAAMPEAVAERLKELTG-LDYVEGYGLTETMAQTH 347 (546)
T ss_pred hhheeeeccccCCHHHHHHHHHHcC-CcEEeccccccccccee
Confidence 9999999999999999999999887 89999999999985443
No 8
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.77 E-value=1.5e-17 Score=127.47 Aligned_cols=123 Identities=27% Similarity=0.341 Sum_probs=109.4
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.++..+ |++++..|++|.+|+...++.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 280 (513)
T PRK07656 201 YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDL 280 (513)
T ss_pred hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCc
Confidence 345556 8999999999999987778999999999999888899999999999999999999999999998876555678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++.++..++++.||+||++++.+
T Consensus 281 ~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 324 (513)
T PRK07656 281 SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTT 324 (513)
T ss_pred cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCcee
Confidence 89999999999999999999999998328999999999975554
No 9
>PLN02246 4-coumarate--CoA ligase
Probab=99.77 E-value=1.7e-17 Score=128.19 Aligned_cols=121 Identities=39% Similarity=0.602 Sum_probs=108.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.+ |+++...|++|++++...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.....+++
T Consensus 219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 298 (537)
T PLN02246 219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS 298 (537)
T ss_pred cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc
Confidence 44556 99999999999999877778899999999999989999999999999999999999999999887655556678
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
++|.+++||+++++++.+++++.+++.++.+.||+||++.++
T Consensus 299 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 340 (537)
T PLN02246 299 SIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVL 340 (537)
T ss_pred ceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCccc
Confidence 999999999999999999999999778899999999998654
No 10
>PLN02654 acetate-CoA ligase
Probab=99.76 E-value=1.5e-17 Score=131.70 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=107.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV- 81 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~- 81 (149)
.+++++ |++++..|++|+.|..+.++.+|..|+++++.++ ++++.+++.++++++|++.++|++++.+.+....
T Consensus 311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 390 (666)
T PLN02654 311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY 390 (666)
T ss_pred hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc
Confidence 456667 9999999999999987888899999999999863 5899999999999999999999999999876532
Q ss_pred -CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003 82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 130 (149)
...+++++|.+.++|+++++++++++.+.+|. +++.+.||+||+++..+
T Consensus 391 ~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~ 442 (666)
T PLN02654 391 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 442 (666)
T ss_pred cccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence 34568899999999999999999999999874 67999999999985443
No 11
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.76 E-value=9e-18 Score=130.51 Aligned_cols=119 Identities=26% Similarity=0.392 Sum_probs=105.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~ 85 (149)
+++.+ |+++...|++|+.|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.... ...+
T Consensus 208 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~ 286 (563)
T PLN02860 208 VGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV 286 (563)
T ss_pred cCCCCCCEEEEecCchhhccH-HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcccc
Confidence 45666 899999999999998 5678999999999999999999999999999999999999999999875432 2245
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++++|.+++||+++++++.+++++.+++.++++.||+||++..
T Consensus 287 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 329 (563)
T PLN02860 287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSS 329 (563)
T ss_pred ccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcc
Confidence 7789999999999999999999999977899999999998743
No 12
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.76 E-value=3.8e-17 Score=126.57 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=108.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.+ |++++..|++|..|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.......+++
T Consensus 233 ~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 312 (547)
T PRK13295 233 LGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVS 312 (547)
T ss_pred hCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcc
Confidence 34555 89999999999999878889999999999999888999999999999999999999999999887655556788
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++++.++ .++++.||+||++..++
T Consensus 313 ~l~~~~~~G~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~ 354 (547)
T PRK13295 313 SLRTFLCAGAPIPGALVERARAALG-AKIVSAWGMTENGAVTL 354 (547)
T ss_pred cceEEEEecCCCCHHHHHHHHHHhC-CCeEEeccCCCCCCeee
Confidence 9999999999999999999999886 89999999999986554
No 13
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.75 E-value=3.1e-17 Score=127.49 Aligned_cols=117 Identities=34% Similarity=0.587 Sum_probs=104.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-CcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~~lr~~ 92 (149)
++++..+|++|++|+...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.. ...+++++|.+
T Consensus 245 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~ 324 (560)
T PLN02574 245 NVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQV 324 (560)
T ss_pred cEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEE
Confidence 78899999999999977777888999999999989999999999999999999999999999887543 34568899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+||+++++++.+++.+.+++.++.+.||+||++.+.+
T Consensus 325 ~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~ 362 (560)
T PLN02574 325 SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGT 362 (560)
T ss_pred EEecccCCHHHHHHHHHHCCCCcEEecccccccCceee
Confidence 99999999999999999987789999999999985443
No 14
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=99.75 E-value=1e-17 Score=125.49 Aligned_cols=117 Identities=32% Similarity=0.408 Sum_probs=100.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCC---HHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC----cCCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL 86 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l 86 (149)
|++++.+|++|.+|+...++.++..|+++++.+..+ ++.+++.++++++|.+.++|+++..+++.++.. ..++
T Consensus 197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l 276 (417)
T PF00501_consen 197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL 276 (417)
T ss_dssp TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence 599999999999999788999999999999998654 578899999999999999999999998743222 3478
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++.++..++++.||+||++.+++
T Consensus 277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 320 (417)
T PF00501_consen 277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIAT 320 (417)
T ss_dssp TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEE
T ss_pred ccccccccccccCChhhccccccccccccceecccccccceeee
Confidence 88999999999999999999999988448999999999997766
No 15
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.74 E-value=2.8e-17 Score=126.16 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=100.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCcC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF 84 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~ 84 (149)
+++++ |++++.+|++|+.|+ ..++.++..|+++++.++ ++++.+++.++++++|++.++|+++..+++.+. ....
T Consensus 155 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~ 233 (499)
T PLN03051 155 MDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGL 233 (499)
T ss_pred cCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccC
Confidence 45566 999999999999997 678899999999999874 789999999999999999999999999987653 2345
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY 127 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~ 127 (149)
+++++|.+.+||++++++..+++++..+ +.++.+.||+||++.
T Consensus 234 ~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~ 277 (499)
T PLN03051 234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELAS 277 (499)
T ss_pred CchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccc
Confidence 6889999999999999999988776332 267999999999863
No 16
>PRK07529 AMP-binding domain protein; Validated
Probab=99.74 E-value=6.4e-17 Score=127.42 Aligned_cols=120 Identities=26% Similarity=0.393 Sum_probs=103.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--C-C---HHHHHHHHHhcCceEEEecHHHHHHHHhCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~ 81 (149)
+++++ |++++.+|++|+.|....++.++..|+++++.+. + + .+.+++.++++++|.+.++|+++..+++.+.
T Consensus 249 ~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~- 327 (632)
T PRK07529 249 LGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV- 327 (632)
T ss_pred cCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-
Confidence 34455 8999999999999987788999999999999753 2 2 4688999999999999999999999988753
Q ss_pred CcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 82 ~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
...+++++|.+++||+++++++.+++++.++ +++++.||+||++..+.
T Consensus 328 ~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g-~~l~~~YG~TE~~~~~~ 375 (632)
T PRK07529 328 DGHDISSLRYALCGAAPLPVEVFRRFEAATG-VRIVEGYGLTEATCVSS 375 (632)
T ss_pred cCCCccceEEEEEcCCCCCHHHHHHHHHHhC-CcEeeeecccccCcccc
Confidence 3457889999999999999999999999886 89999999999986554
No 17
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.74 E-value=7.5e-17 Score=124.66 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=107.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
++++. |++++.+|++|..|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.........+++
T Consensus 231 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 310 (538)
T TIGR03208 231 LELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP 310 (538)
T ss_pred cCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCC
Confidence 35555 89999999999999878889999999999999889999999999999999999999999998765443445678
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++.+.++ +++++.||+||++.+..
T Consensus 311 ~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 352 (538)
T TIGR03208 311 SLFTFLCAGAPIPGILVERAWELLG-ALIVSAWGMTENGAVTV 352 (538)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHcC-CeEEeeeccCcCCCccc
Confidence 9999999999999999999998887 89999999999986554
No 18
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.74 E-value=8.7e-17 Score=122.83 Aligned_cols=118 Identities=28% Similarity=0.312 Sum_probs=105.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS 88 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 88 (149)
+.+. |+++..+|++|.+|+....+.++..|+++++.+.++++.+++.++++++|.+.++|++++.+.+.......++++
T Consensus 186 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 265 (496)
T PRK06839 186 DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQS 265 (496)
T ss_pred CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcc
Confidence 4455 899999999999998777788999999999988899999999999999999999999999999876655667889
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+|.+++||+++++++.+++++. + +++.+.||+||++...
T Consensus 266 lr~~~~gG~~~~~~~~~~~~~~-g-~~~~~~YG~tE~~~~~ 304 (496)
T PRK06839 266 VRWFYNGGAPCPEELMREFIDR-G-FLFGQGFGMTETSPTV 304 (496)
T ss_pred cceEEECCCCCCHHHHHHHHHh-C-CeeEeeccCCCCCcce
Confidence 9999999999999999999886 4 8999999999998543
No 19
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.74 E-value=4.8e-17 Score=128.00 Aligned_cols=119 Identities=21% Similarity=0.229 Sum_probs=104.6
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..|++|+.|+.+.++.++..|+++++.++ ++++.+++.++++++|++.++|++++.+.+.+.
T Consensus 268 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 347 (628)
T TIGR02316 268 IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW 347 (628)
T ss_pred hcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence 356666 9999999999999987788999999999999863 579999999999999999999999999877543
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
....+++++|.+.+||+++++++.+++++.++ .++++.||+||++.
T Consensus 348 ~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG~TE~~~ 393 (628)
T TIGR02316 348 LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYWQTETGW 393 (628)
T ss_pred cccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEecccccccCc
Confidence 23457889999999999999999999998887 88999999999984
No 20
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.73 E-value=7.8e-17 Score=133.62 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=107.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
++.++ |++++.+|++|..|+....+.++..|+++++.+ .++++.+++.++++++|++..+|++++.+.+++...+.++
T Consensus 818 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 897 (1146)
T PRK08633 818 FNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMF 897 (1146)
T ss_pred cCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccC
Confidence 44555 999999999999999776889999999999876 5799999999999999999999999999988766666778
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++.++ .++++.||+||++..++
T Consensus 898 ~~lr~~~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~ 940 (1146)
T PRK08633 898 ASLRLVVAGAEKLKPEVADAFEEKFG-IRILEGYGATETSPVAS 940 (1146)
T ss_pred CCeeeEEEcCCcCCHHHHHHHHHHhC-CCeecccccccCcceEE
Confidence 99999999999999999999999987 89999999999985543
No 21
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.73 E-value=1.4e-16 Score=121.89 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=108.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
++... |+++...|++|.+++....+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.......+++
T Consensus 185 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~ 264 (497)
T PRK06145 185 LGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLD 264 (497)
T ss_pred hCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccc
Confidence 34555 89999999999999876677889999999999989999999999999999999999999999887655556778
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
++|.+.+||+++++++.+++.+.+++.++++.||+||++...
T Consensus 265 ~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~ 306 (497)
T PRK06145 265 SLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGD 306 (497)
T ss_pred cceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcc
Confidence 999999999999999999999999778899999999998543
No 22
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.73 E-value=1.4e-16 Score=122.31 Aligned_cols=122 Identities=25% Similarity=0.306 Sum_probs=108.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
.++.+ |+++..+|++|..|+...++.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......+++
T Consensus 207 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 286 (523)
T PRK08316 207 GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLS 286 (523)
T ss_pred hCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcc
Confidence 34555 89999999999999866667788999999999888999999999999999999999999999987665666788
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+..||++++.++.+++++.+++.++++.||+||++.++.
T Consensus 287 ~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 329 (523)
T PRK08316 287 SLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLAT 329 (523)
T ss_pred cceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCcccc
Confidence 9999999999999999999999987789999999999986554
No 23
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.73 E-value=1.1e-16 Score=125.74 Aligned_cols=123 Identities=28% Similarity=0.320 Sum_probs=106.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV- 81 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~- 81 (149)
.+++++ |++++..|++|+.|..+.++.++..|+++++.++ ++++.+++.++++++|++.++|++++.+.+....
T Consensus 272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 351 (625)
T TIGR02188 272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW 351 (625)
T ss_pred ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence 346666 9999999999999987778999999999999753 4899999999999999999999999999876432
Q ss_pred -CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003 82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 130 (149)
...+++++|.+.+||+++++++++++++.++. +++++.||+||+++..+
T Consensus 352 ~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~ 403 (625)
T TIGR02188 352 VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMI 403 (625)
T ss_pred cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCcee
Confidence 33568899999999999999999999998863 78999999999985543
No 24
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.73 E-value=6.3e-17 Score=129.06 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=103.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |++++.+|++|++|+...++.++..|+++++.+. +++..+.+.++++++|.+.++|+++..+.+.. ...+
T Consensus 400 ~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~ 477 (718)
T PRK08043 400 IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYD 477 (718)
T ss_pred hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Cccc
Confidence 345666 9999999999999987778899999999998874 57888999999999999999999998886642 3356
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||+++++++.+++++.++ +++++.||+||++...+
T Consensus 478 ~~~lr~i~~gg~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~ 521 (718)
T PRK08043 478 FARLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVS 521 (718)
T ss_pred ccceEEEEEeCccCCHHHHHHHHHHcC-CCeecccCcccccceEE
Confidence 789999999999999999999999887 89999999999975443
No 25
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.73 E-value=1.4e-16 Score=123.25 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=104.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDL 86 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l 86 (149)
.++. |+++...|++|.+|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.... ...++
T Consensus 233 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 311 (537)
T PRK13382 233 PWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSG 311 (537)
T ss_pred CCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCc
Confidence 3445 889999999999998 6788999999999999889999999999999999999999999999875422 23356
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||++++++++++|.+.++ .++++.||+||++..++
T Consensus 312 ~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~ 354 (537)
T PRK13382 312 RSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATEAGMIAT 354 (537)
T ss_pred cceeEEEEcCCCCCHHHHHHHHHHcC-CcEEecccccccCccee
Confidence 68999999999999999999999997 78999999999986554
No 26
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.72 E-value=1.9e-16 Score=130.08 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=100.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |++++.+|++|++|+...++..+..|+++++.++++++.+++.++++++|++.++|++++.+++.+.....+++
T Consensus 641 ~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~ 720 (994)
T PRK07868 641 AALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH 720 (994)
T ss_pred cCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC
Confidence 35555 99999999999999966666777777777777889999999999999999999999999999886554445677
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+. | +.+++++.+++.+.+++.++++.||+||++.+..
T Consensus 721 slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~ 761 (994)
T PRK07868 721 PVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA 761 (994)
T ss_pred ceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccc
Confidence 899876 3 3499999999999997788999999999875443
No 27
>PRK08315 AMP-binding domain protein; Validated
Probab=99.72 E-value=2.8e-16 Score=121.80 Aligned_cols=123 Identities=23% Similarity=0.304 Sum_probs=108.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
..++++ |+++...|++|..|+...++.++..|+++++. ..+++..+++.++++++|.+.++|+++..++..+.....+
T Consensus 234 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~ 313 (559)
T PRK08315 234 AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD 313 (559)
T ss_pred hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC
Confidence 345666 89999999999999988889999999999854 5789999999999999999999999999888776555567
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.++.||+++++++.+++.+.++..++++.||+||++.+++
T Consensus 314 ~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 358 (559)
T PRK08315 314 LSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVST 358 (559)
T ss_pred chhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccccee
Confidence 889999999999999999999999988566999999999986554
No 28
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=99.72 E-value=1e-16 Score=128.08 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC--------CCCCc
Q 032003 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVKK 83 (149)
Q Consensus 12 ~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------~~~~~ 83 (149)
.+|+++..+|++|+++.. ..+.++..|+++++.++ +++.+++.++++++|++.++|.++..+.+. +....
T Consensus 346 ~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~ 423 (746)
T PTZ00342 346 NPKTHLSYLPISHIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKR 423 (746)
T ss_pred CCCeEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHH
Confidence 348999999999999984 56778999999998865 899999999999999999999999998642 11000
Q ss_pred ----------------------------------CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 84 ----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 84 ----------------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
...+++|.+.+||+++++++.+++++.++ +++.++||+||+++..
T Consensus 424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~ 502 (746)
T PTZ00342 424 FLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPI 502 (746)
T ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCccccee
Confidence 00257999999999999999999998887 8999999999997543
Q ss_pred c
Q 032003 130 C 130 (149)
Q Consensus 130 ~ 130 (149)
+
T Consensus 503 ~ 503 (746)
T PTZ00342 503 F 503 (746)
T ss_pred e
Confidence 3
No 29
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.71 E-value=2.6e-16 Score=122.51 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=105.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCcC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF 84 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~ 84 (149)
+++++ |++++..|++|..|....++.++..|+++++.+ .++++.+++.++++++|++.++|++++.+.+... ....
T Consensus 241 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 320 (570)
T PRK04319 241 LDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKY 320 (570)
T ss_pred cCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccC
Confidence 45556 899999999999998788899999999999875 6899999999999999999999999999987542 2335
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+++++|.+.+||+++++++.+++++.++ .++++.||+||++...
T Consensus 321 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~ 364 (570)
T PRK04319 321 DLSSLRHILSVGEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIM 364 (570)
T ss_pred CcccceEEEEcccCCCHHHHHHHHHHhC-CCeEeceeecccCCEE
Confidence 6789999999999999999999999887 8899999999998543
No 30
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.71 E-value=2.4e-16 Score=122.07 Aligned_cols=123 Identities=27% Similarity=0.382 Sum_probs=108.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+++.+ |+++...|++|..|....++.++..|+++++.. .++++.+++.++++++|++.++|+++..++........++
T Consensus 237 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 316 (558)
T PRK12583 237 LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDL 316 (558)
T ss_pred hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCc
Confidence 45666 899999999999999888899999999998764 6789999999999999999999999988887665555678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
+++|.+++||+++++++.+++.+.++..++.+.||+||++.+++.
T Consensus 317 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 361 (558)
T PRK12583 317 SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQ 361 (558)
T ss_pred hhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceec
Confidence 899999999999999999999999886679999999999866553
No 31
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.71 E-value=2.2e-16 Score=122.87 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=105.7
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 13 ~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
+|++++.+|++|.+|+...+..++..|+++++.+..+++.+++.++++++|.+.++|++++.+.+.+.....+++++|.+
T Consensus 262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i 341 (573)
T PRK05605 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNA 341 (573)
T ss_pred CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEE
Confidence 38999999999999987777788999999999988899999999999999999999999999988766556678899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++||+++++++.+++.+.++ .++++.||+||+++.++
T Consensus 342 ~~gg~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~ 378 (573)
T PRK05605 342 FSGAMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIV 378 (573)
T ss_pred EECCCcCCHHHHHHHHHHhC-CCeecccccchhchhhh
Confidence 99999999999999988876 88999999999985544
No 32
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.71 E-value=3.7e-16 Score=119.85 Aligned_cols=120 Identities=20% Similarity=0.289 Sum_probs=105.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.. |++++.+|++|..|+ ..++.++..|+++++.+.++++.+.+.++++++|.+.++|+++..+.+... ...+++
T Consensus 197 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~ 274 (515)
T TIGR03098 197 LENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAP 274 (515)
T ss_pred hCCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCcc
Confidence 34555 899999999999998 567899999999999988999999999999999999999999999986532 234677
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++++.+++.++++.||+||++....
T Consensus 275 ~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 317 (515)
T TIGR03098 275 SLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTY 317 (515)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEe
Confidence 8999999999999999999999987688999999999875443
No 33
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.71 E-value=2.9e-16 Score=120.39 Aligned_cols=121 Identities=27% Similarity=0.319 Sum_probs=106.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++.+ |+++...|++|..++... +.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......++
T Consensus 202 ~~~~~~~d~~~~~~~~~~~~~~~~~-~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 280 (521)
T PRK06187 202 WLKLSRDDVYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDF 280 (521)
T ss_pred hhCCCCCCEEEEeCCchHHhhHHHH-HHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCc
Confidence 345666 899999999999998444 459999999999988899999999999999999999999999998876556678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+..||+++++++.+++.+.++ +++++.||+||++....
T Consensus 281 ~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~ 323 (521)
T PRK06187 281 SSLRLVIYGGAALPPALLREFKEKFG-IDLVQGYGMTETSPVVS 323 (521)
T ss_pred chhhEEEEcCcCCCHHHHHHHHHHhC-cchheeeccCccCcccc
Confidence 89999999999999999999999885 89999999999985444
No 34
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.71 E-value=3.2e-16 Score=120.91 Aligned_cols=117 Identities=25% Similarity=0.360 Sum_probs=104.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++. |++++.+|++|.+++.. ..+.++..|+++++.+++++..+++.++++++|++.++|+++..+.+.......++
T Consensus 219 ~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 298 (527)
T TIGR02275 219 CWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDL 298 (527)
T ss_pred cCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCc
Confidence 44555 89999999999999854 47888999999999888899999999999999999999999999887665555678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
+++|.+.+||+++++++.+++.+.++ .++++.||+||++
T Consensus 299 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~ 337 (527)
T TIGR02275 299 SSLKLLQVGGAKFSEAAARRVPAVFG-CQLQQVFGMAEGL 337 (527)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHhC-CeEEeeeccCccC
Confidence 89999999999999999999999887 8999999999965
No 35
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.71 E-value=2.6e-16 Score=125.71 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=103.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+++++ |++++..|++|+.|. +.++.+|..|+++++.++ +++..+++.++++++|++..+|++++.+.+.......++
T Consensus 392 ~~l~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl 470 (728)
T PLN03052 392 LDIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW 470 (728)
T ss_pred cCCCCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence 35566 999999999999998 678899999999999974 567789999999999999999999999987654456688
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
+++|.+.+||++++++...++.+.++..++.+.||+||+++
T Consensus 471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 511 (728)
T PLN03052 471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGG 511 (728)
T ss_pred hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCc
Confidence 99999999999999999988888776467999999999874
No 36
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.70 E-value=4.4e-16 Score=122.70 Aligned_cols=122 Identities=30% Similarity=0.357 Sum_probs=105.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-- 81 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-- 81 (149)
+++++ |++++..|++|+.+..+.++.++..|+++++.++ ++++.+++.++++++|.+.++|++++.+++....
T Consensus 282 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 361 (637)
T PRK00174 282 FDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP 361 (637)
T ss_pred cCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc
Confidence 45666 9999999999999987788999999999999753 4799999999999999999999999999876432
Q ss_pred CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 82 ~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 130 (149)
...+++++|.+.+||+++++++.+++.+.++. +++++.||+||++...+
T Consensus 362 ~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 412 (637)
T PRK00174 362 KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI 412 (637)
T ss_pred ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence 23467899999999999999999999988763 78999999999985443
No 37
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.70 E-value=4.5e-16 Score=119.82 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDL 86 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l 86 (149)
++.+ |+++..+|++|.+|+ ...+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.... ...++
T Consensus 213 ~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 291 (516)
T PRK13383 213 RLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPL 291 (516)
T ss_pred ccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCC
Confidence 4555 899999999999998 5678889999999998889999999999999999999999999999865432 12357
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+++||+++++++.+++.+.++ .++++.||+||++..+.
T Consensus 292 ~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~ 334 (516)
T PRK13383 292 PQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGYGSTEVGIGAL 334 (516)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHcC-chhhhccccccccccee
Confidence 78999999999999999999999997 88999999999985443
No 38
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.70 E-value=3.4e-16 Score=122.92 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=96.8
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCH---HHHHHHHHhcCceEEEecHHHHHHHHhCC----CCCcCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDL---EMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFD 85 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~---~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~ 85 (149)
+++++.+|++|++|+...++.++..|+++++.+ .+++ ..+++.++++++|.+.++|+++..+++.. .....+
T Consensus 253 ~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~ 332 (614)
T PRK08180 253 PVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF 332 (614)
T ss_pred cEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh
Confidence 899999999999998777889999999999976 3444 56788899999999999999999887632 222345
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHh----CC-CCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~----~~-~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||+++++++.+++++. ++ ++++++.||+||++.+++
T Consensus 333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~ 382 (614)
T PRK08180 333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSAT 382 (614)
T ss_pred ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceE
Confidence 7899999999999999999998874 33 267999999999985544
No 39
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.70 E-value=4e-16 Score=123.30 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=98.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC-------
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL------- 80 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~------- 80 (149)
+++.+ |++++.+|++|+++. ..++.++..|+++++.+. +++.+++.++++++|++.++|+++..+.+...
T Consensus 257 ~~~~~~d~~l~~lPl~h~~~~-~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~ 334 (651)
T PLN02736 257 TKFYPSDVHISYLPLAHIYER-VNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESG 334 (651)
T ss_pred cCCCCCCEEEEeCCHHHHHHH-HHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhccc
Confidence 34555 999999999999999 567889999999988764 88999999999999999999999988754210
Q ss_pred ----------------------CCc------------CCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003 81 ----------------------VKK------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL 125 (149)
Q Consensus 81 ----------------------~~~------------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 125 (149)
... ..+ +++|.+.+||+++++++.+++++.++ ++++++||+||+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~ 413 (651)
T PLN02736 335 GLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTET 413 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHh
Confidence 000 011 47999999999999999999998887 889999999999
Q ss_pred ccccc
Q 032003 126 YYESC 130 (149)
Q Consensus 126 ~~~~~ 130 (149)
++..+
T Consensus 414 ~~~~~ 418 (651)
T PLN02736 414 SCVIS 418 (651)
T ss_pred chhee
Confidence 75443
No 40
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.70 E-value=4.8e-16 Score=120.31 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=104.6
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++.+ |+++...|++|.+++ ...+.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+.+.......+
T Consensus 213 ~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 291 (539)
T PRK07008 213 AMGLSARDAVLPVVPMFHVNAW-GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR 291 (539)
T ss_pred ccCCCCCceEEecCchHHhhhH-HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC
Confidence 345555 899999999999887 44578889999999874 679999999999999999999999999998876555567
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
++++|.+.++|+++++++.+++++.++ .++++.||+||++..+
T Consensus 292 ~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~ 334 (539)
T PRK07008 292 FSTLRRTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLG 334 (539)
T ss_pred cccceEEEEcCCCCCHHHHHHHHHHhC-Cceecccccccccccc
Confidence 889999999999999999999998886 8999999999998543
No 41
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.69 E-value=3.7e-16 Score=122.97 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=103.7
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC----CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..|++|+.|..+.++.++..|+++++.+ .++++.+++.++++++|.+.++|++++.+.+...
T Consensus 269 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 348 (629)
T PRK10524 269 IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL 348 (629)
T ss_pred hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc
Confidence 345666 999999999999987778899999999999876 3579999999999999999999999999877542
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
....+++++|.+.+||+++++++.+++++.++ +++++.||+||++.
T Consensus 349 ~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~ 394 (629)
T PRK10524 349 LRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNYWQTETGW 394 (629)
T ss_pred ccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEeccccccccc
Confidence 13456789999999999999999999999887 89999999999973
No 42
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.69 E-value=4.8e-16 Score=118.45 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=104.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
++..+ |+++..+|++|..|+...++.++..|+++++.+.++++.+++.++ +++|++.++|+++..+.+... ...+++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~ 241 (471)
T PRK07787 164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALR 241 (471)
T ss_pred cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-cccccc
Confidence 34555 899999999999999888999999999999998899999999999 999999999999999987543 234578
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+..||+++++++.+++.+.++ .++++.||+||++....
T Consensus 242 ~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 283 (471)
T PRK07787 242 GARLLVSGSAALPVPVFDRLAALTG-HRPVERYGMTETLITLS 283 (471)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHcC-CCeecccCccccCccee
Confidence 8999999999999999999999886 88999999999985443
No 43
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.69 E-value=4e-16 Score=120.17 Aligned_cols=117 Identities=32% Similarity=0.361 Sum_probs=104.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.. |+++...|++|..|+ . ++.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus 204 ~~~~~~~~~l~~~pl~~~~g~-~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~ 281 (524)
T PRK06188 204 WEWPADPRFLMCTPLSHAGGA-F-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLS 281 (524)
T ss_pred cCCCcCcEEEEecCchhhhhH-H-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCc
Confidence 44555 899999999999987 3 57889999999999999999999999999999999999999999987765666788
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++|.+.+||++++++..+++.+.++ ..+.+.||+||++..
T Consensus 282 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~ 321 (524)
T PRK06188 282 SLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMV 321 (524)
T ss_pred ceeEEEEcCCCCCHHHHHHHHHHhC-chhhheeCccccCCc
Confidence 9999999999999999999888887 789999999999643
No 44
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=118.13 Aligned_cols=119 Identities=21% Similarity=0.249 Sum_probs=103.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS 88 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 88 (149)
+.++ |++++..|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+..+|+.+..+++.......++++
T Consensus 224 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~ 303 (547)
T PRK06087 224 NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSA 303 (547)
T ss_pred CCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCC
Confidence 4555 999999999999998788889999999999999899999999999999999998888877777765445567789
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+|.+++||+++++++.+++.+. + +++++.||+||++....
T Consensus 304 lr~i~~gG~~~~~~~~~~~~~~-~-~~l~~~YG~TE~~~~~~ 343 (547)
T PRK06087 304 LRFFLCGGTTIPKKVARECQQR-G-IKLLSVYGSTESSPHAV 343 (547)
T ss_pred eEEEEEcCCCCCHHHHHHHHHc-C-CcEEEEecccccCCccc
Confidence 9999999999999999988765 4 89999999999985544
No 45
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.69 E-value=4.5e-16 Score=123.00 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CC----HHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
..++ |++++..|++|+.+. ..++.++..|+++++.++ .. ++.+++.++++++|.+.++|++++.+++...
T Consensus 292 ~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 370 (647)
T PTZ00237 292 EKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA 370 (647)
T ss_pred CCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence 3444 899999999999876 567899999999999764 12 7899999999999999999999999987432
Q ss_pred ---CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 81 ---VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 81 ---~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
....+++++|.+.+||+++++++.+++++.++ +++.+.||+||++...
T Consensus 371 ~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~yG~TE~~~~~ 421 (647)
T PTZ00237 371 TIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGYGQTEIGITY 421 (647)
T ss_pred cccccccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEeeechHHhChhh
Confidence 13356889999999999999999999999887 8999999999998543
No 46
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.68 E-value=1.3e-15 Score=116.11 Aligned_cols=116 Identities=26% Similarity=0.345 Sum_probs=100.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |+++..+|++|++|+ ..++.++..|+++++.+..+++.+++.++++++|++.++|+++..+....... ....
T Consensus 177 ~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~ 254 (483)
T PRK03640 177 LGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPS 254 (483)
T ss_pred cCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCC
Confidence 45566 999999999999998 56789999999999999899999999999999999999999999998653322 3346
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++|.+..||+++++++.+++++. ++++++.||+||++..
T Consensus 255 ~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~ 293 (483)
T PRK03640 255 SFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQ 293 (483)
T ss_pred cceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCccccc
Confidence 89999999999999999998875 4899999999998743
No 47
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.68 E-value=1.3e-15 Score=116.49 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=102.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
++.++ |+++...|++|..++ ..++.++..|+++++.+.++++.+++.++++++|++.++|+++..+.+... . ..
T Consensus 179 ~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~ 253 (487)
T PRK07638 179 FHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IE 253 (487)
T ss_pred cCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CC
Confidence 34555 899999999999987 778899999999999998999999999999999999999999999987632 2 33
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
+.+.++++|++++++..+++++.+|+.++++.||+||++..+..
T Consensus 254 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 297 (487)
T PRK07638 254 NKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL 297 (487)
T ss_pred ceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence 45567789999999999999999987899999999999865543
No 48
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.68 E-value=1.1e-15 Score=118.50 Aligned_cols=116 Identities=32% Similarity=0.606 Sum_probs=102.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC--CceE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SLKL 91 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~ 91 (149)
++.+...|++|.+|+...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.....+++ ++|.
T Consensus 228 ~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~ 307 (546)
T PLN02330 228 VVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQA 307 (546)
T ss_pred eEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeee
Confidence 57889999999999866778899999999999999999999999999999999999999999886554444444 4789
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+.+||+++++++++++++.+++.++++.||+||++...
T Consensus 308 i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 345 (546)
T PLN02330 308 IMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCIT 345 (546)
T ss_pred EEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccce
Confidence 99999999999999999999769999999999987543
No 49
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.68 E-value=1.1e-15 Score=114.00 Aligned_cols=119 Identities=23% Similarity=0.183 Sum_probs=104.7
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC---CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++.. |++++..|++|..++ ..++.++..|+++++.++. .++.+.+.++++++|.+.++|++++.+.+...
T Consensus 155 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~--- 230 (408)
T TIGR01733 155 RYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP--- 230 (408)
T ss_pred hcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---
Confidence 344555 899999999999998 7789999999999998754 37899999999999999999999999988754
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.+||+++++++.+++.+.+++..+++.||+||++..+.
T Consensus 231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~ 277 (408)
T TIGR01733 231 PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWST 277 (408)
T ss_pred hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEE
Confidence 56789999999999999999999999997788999999999986553
No 50
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.68 E-value=1.4e-15 Score=116.84 Aligned_cols=120 Identities=26% Similarity=0.281 Sum_probs=103.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~ 85 (149)
+++.+ +++++..|++|.+++ ...+.++..|+++++.+.++++.+++.++++++|++.++|+++..+.+.... ...+
T Consensus 195 ~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 273 (511)
T PRK13391 195 WGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD 273 (511)
T ss_pred cCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCC
Confidence 34455 899999999999998 5567889999999999889999999999999999999999999988765322 2345
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+++||+++++++.+++++.++ .++++.||+||++.++.
T Consensus 274 ~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~ 317 (511)
T PRK13391 274 LSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYYAATEGLGFTA 317 (511)
T ss_pred ccceeEEEEccCCCCHHHHHHHHHHcC-CceeeeeccccccceEE
Confidence 789999999999999999999999887 88999999999986543
No 51
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.68 E-value=1.3e-15 Score=117.02 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=105.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |+++...|++|..++...+..++..|+++++.+ .++++.+++.++++++|.+.++|+++..+.+........
T Consensus 197 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~ 276 (508)
T TIGR02262 197 TLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED 276 (508)
T ss_pred hcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccc
Confidence 345666 899999999999998777788899999999876 468999999999999999999999998887765444445
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
..++|.+.+||+++++++.+.|++.++ +++++.||+||++...+
T Consensus 277 ~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~ 320 (508)
T TIGR02262 277 QVRLRLCTSAGEALPAEVGQRWQARFG-VDIVDGIGSTEMLHIFL 320 (508)
T ss_pred cccceeEEEcCCCCCHHHHHHHHHHhC-CchhhCccccccCceee
Confidence 678999999999999999999999887 89999999999985443
No 52
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.68 E-value=8.9e-16 Score=119.29 Aligned_cols=116 Identities=31% Similarity=0.495 Sum_probs=103.3
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
+++++..|++|.+|....++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.+.....+++++|.+.
T Consensus 250 ~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~ 329 (563)
T PRK06710 250 EVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACI 329 (563)
T ss_pred ceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhhee
Confidence 68899999999999866677889999999999888999999999999999999999999999876654555678999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+||+++++++.+++++.++ .++++.||+||++..+.
T Consensus 330 ~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 365 (563)
T PRK06710 330 SGSAPLPVEVQEKFETVTG-GKLVEGYGLTESSPVTH 365 (563)
T ss_pred eCCCcCCHHHHHHHHHhhC-CCEecccccccCccccc
Confidence 9999999999999998886 88999999999986543
No 53
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.67 E-value=1.4e-15 Score=116.81 Aligned_cols=121 Identities=26% Similarity=0.272 Sum_probs=103.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~ 84 (149)
.+++.+ ++++...|++|..+..+. +.++..|+++++.+..+++.+++.++++++|.+.++|+++..+++.+.. ...
T Consensus 190 ~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 268 (509)
T PRK12406 190 IYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268 (509)
T ss_pred hcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccC
Confidence 345566 899999999999887444 5678889999998888999999999999999999999999999875432 334
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++++|.++.||+++++++.+++.+.++ .++++.||+||++.++.
T Consensus 269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 313 (509)
T PRK12406 269 DVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYYGSTESGAVTF 313 (509)
T ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeeccccccCceEe
Confidence 6789999999999999999999999887 88999999999986554
No 54
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.67 E-value=2.1e-15 Score=116.71 Aligned_cols=116 Identities=34% Similarity=0.484 Sum_probs=103.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
+++++..|++|..++...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.+.....+++++|.++
T Consensus 239 ~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~ 318 (541)
T TIGR03205 239 ERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIG 318 (541)
T ss_pred ceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEE
Confidence 78999999999999877788899999999988888999999999999999999999999999876544455678999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.||+++++++.+++.+.++ .++++.||+||++...+
T Consensus 319 ~gg~~~~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~ 354 (541)
T TIGR03205 319 SGGAPLPVEVANFFERKTG-LKLKSGWGMTETCSPGT 354 (541)
T ss_pred EccccCCHHHHHHHHHHhC-CCeecccccccCCcccc
Confidence 9999999999999988876 89999999999985443
No 55
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.67 E-value=1.4e-15 Score=117.83 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=102.6
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |+++...|++|.+++ ...+.++..|+++++.. .++++.+++.++++++|.+.++|+++..+.+.......+
T Consensus 214 ~~~~~~~d~~~~~~p~~h~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 292 (542)
T PRK06018 214 ALGTSAADTMLPVVPLFHANSW-GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK 292 (542)
T ss_pred hcCCCCCCEEEEecCHHHHhhh-HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC
Confidence 345556 899999999999998 44567889999998875 678999999999999999999999999998766545556
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
++++|.+.+||+++++++.+++++ ++ .++++.||+||++...
T Consensus 293 ~~~lr~~~~~G~~l~~~~~~~~~~-~~-~~~~~~YG~tE~~~~~ 334 (542)
T PRK06018 293 LPHLKMVVCGGSAMPRSMIKAFED-MG-VEVRHAWGMTEMSPLG 334 (542)
T ss_pred cccceEEEEcCCCCCHHHHHHHHH-hC-CCeEeeecccccCccc
Confidence 789999999999999999999998 65 8999999999998543
No 56
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.67 E-value=1.3e-15 Score=117.74 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=104.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC--c
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--K 83 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--~ 83 (149)
+++.+ |++++..|++|..|+...++.++..|+++++.+ .+++..+++.++++++|.+.++|+++..+.+..... .
T Consensus 212 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 291 (534)
T PRK05852 212 YRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSG 291 (534)
T ss_pred hCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccccc
Confidence 34555 899999999999999888899999999998865 478999999999999999999999999998765432 2
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.++|+++++++.+++.+.++ .++++.||+||++...+
T Consensus 292 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~ 337 (534)
T PRK05852 292 RKPAALRFIRSCSAPLTAETAQALQTEFA-APVVCAFGMTEATHQVT 337 (534)
T ss_pred ccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChhhccCccccchhhh
Confidence 45678999999999999999999999987 88999999999985444
No 57
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.67 E-value=2.4e-15 Score=116.43 Aligned_cols=115 Identities=25% Similarity=0.397 Sum_probs=101.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~ 91 (149)
++++...|++|.+|+ ..++.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+.........+ .++|.
T Consensus 217 ~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~ 294 (542)
T PRK07786 217 DVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRV 294 (542)
T ss_pred ceEEEecchHHHHHH-HHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEE
Confidence 899999999999998 67889999999999865 579999999999999999999999999998765433333 36999
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+.+||+++++++++++++.+++.++++.||+||++.+.+
T Consensus 295 i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~ 333 (542)
T PRK07786 295 LSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC 333 (542)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceE
Confidence 999999999999999999997799999999999986544
No 58
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.67 E-value=1.7e-15 Score=120.73 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=104.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+++.+ |+++...|++|..++...++.++..|+++++.+ .++++.+.+.++++++|++.++|+++..+++... ..++
T Consensus 182 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~ 259 (705)
T PRK06060 182 LRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSF 259 (705)
T ss_pred hCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccc
Confidence 45556 899999999999988677889999999999986 5789999999999999999999999999987542 3457
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+++|.+++||+++++++.+++.+.+++.++++.||+||++...
T Consensus 260 ~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 302 (705)
T PRK06060 260 RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTF 302 (705)
T ss_pred cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceE
Confidence 8899999999999999999999999778999999999997543
No 59
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.67 E-value=1.9e-15 Score=115.72 Aligned_cols=119 Identities=24% Similarity=0.330 Sum_probs=105.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |++++..|++|..|+...++.++..|+++++.+..+++.+++.++ ++|.+..+|+++..++..+......++
T Consensus 192 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~ 269 (504)
T PRK07514 192 WRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAA 269 (504)
T ss_pred hCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccccc
Confidence 45555 899999999999998777889999999999999899999999994 699999999999999887665566788
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+..||+++++++.+++++.++ .++++.||+||++....
T Consensus 270 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 311 (504)
T PRK07514 270 HMRLFISGSAPLLAETHREFQERTG-HAILERYGMTETNMNTS 311 (504)
T ss_pred ceeeEEecCCCCCHHHHHHHHHHhC-Ccceeeccccccccccc
Confidence 9999999999999999999999887 88999999999986544
No 60
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=99.67 E-value=9.7e-16 Score=115.65 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=111.3
Q ss_pred ccccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 6 QETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 6 ~~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
...++.++ |++..++|++|++|.+.++.+++..|+|+++-++|++..+++...+|++|++-.+..+.+.+++.|.....
T Consensus 275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e 354 (649)
T KOG1179|consen 275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE 354 (649)
T ss_pred HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence 45678888 99999999999999999999999999999999999999999999999999999999999999998876655
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND 132 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 132 (149)
.-..+|..+--| +.++.++.+.++|+..++.+.||+||......+.
T Consensus 355 r~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~ 400 (649)
T KOG1179|consen 355 RQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY 400 (649)
T ss_pred cCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeeee
Confidence 556788776555 8999999999999877799999999987665544
No 61
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.65 E-value=3.4e-15 Score=124.16 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=104.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+.++ |++++.+|++|.+|+...++.++..|+++++.++ .+++.+.+.++++++|.+..+|+++..+.+.. ...++
T Consensus 829 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~ 906 (1140)
T PRK06814 829 IDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDF 906 (1140)
T ss_pred hCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccc
Confidence 45566 9999999999999987788899999999998864 57788999999999999999999999987653 34567
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++.++ .++++.||+||++....
T Consensus 907 ~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~ 949 (1140)
T PRK06814 907 RSLRYVFAGAEKVKEETRQTWMEKFG-IRILEGYGVTETAPVIA 949 (1140)
T ss_pred cceeEEEEcCCcCCHHHHHHHHHHhC-CcEEeccccccccceEE
Confidence 89999999999999999999999886 89999999999986544
No 62
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.65 E-value=2.3e-15 Score=117.37 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=101.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+++.+ |++++.+|++|.+|+ ...+.++..|+++++.+ .++++.+++.++++++|.+.++|+++..++........+.
T Consensus 219 ~~~~~~~~~l~~~pl~h~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 297 (576)
T PRK05620 219 LAVTHGESFLCCVPIYHVLSW-GVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPER 297 (576)
T ss_pred cCCCCCCeEEEeCChHHhhhh-HHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCccc
Confidence 45555 899999999999998 56788999999999875 5799999999999999999999999998876433233344
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
.++|.++.||+++++++.+++++.++ +++++.||+||++..+
T Consensus 298 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~ 339 (576)
T PRK05620 298 MSLQEIYVGGSAVPPILIKAWEERYG-VDVVHVWGMTETSPVG 339 (576)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHhC-Cceeeeccccccccce
Confidence 57999999999999999999998887 8999999999998543
No 63
>PRK12467 peptide synthase; Provisional
Probab=99.65 E-value=1.6e-15 Score=136.93 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=106.9
Q ss_pred cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
..+++++ |+++...|++|+.++ +.++.++..|+++++.++ ++++.+++.++++++|++.++|+++..+.+.. ..
T Consensus 3271 ~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~ 3347 (3956)
T PRK12467 3271 EAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GG 3347 (3956)
T ss_pred HhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cc
Confidence 3456666 999999999999997 788999999999999875 68999999999999999999999999997653 23
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus 3348 ~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467 3348 ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence 46788999999999999999999998887788999999999985544
No 64
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.65 E-value=2.8e-15 Score=114.88 Aligned_cols=115 Identities=27% Similarity=0.321 Sum_probs=101.7
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCCCCceE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKL 91 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~ 91 (149)
+++++..|++|.+++. ..+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.+.. ...+++++|.
T Consensus 188 ~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~ 266 (502)
T PRK08276 188 SVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRV 266 (502)
T ss_pred CEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceE
Confidence 7899999999999984 445799999999999989999999999999999999999999999876542 2346789999
Q ss_pred EEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+.+||+++++++++++++.++ .++++.||+||++.++.
T Consensus 267 i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~ 304 (502)
T PRK08276 267 AIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTV 304 (502)
T ss_pred EEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeE
Confidence 999999999999999999886 78999999999986443
No 65
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.65 E-value=4.2e-15 Score=116.38 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=100.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |+++..+|++|.+|+...++.++..|+++++.++++++.+++.++++++|++.++|++++.+.+..........
T Consensus 235 ~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~ 314 (600)
T PRK08279 235 LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDH 314 (600)
T ss_pred cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCc
Confidence 55666 99999999999999977777888999999999999999999999999999999999999998876544334455
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++|.+ +|+++++++.+++.+.+|..++++.||+||++..
T Consensus 315 ~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~ 353 (600)
T PRK08279 315 RLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVG 353 (600)
T ss_pred ceeEE--ecCCCCHHHHHHHHHHhCcceeeeeeccccccee
Confidence 67654 4778999999999999985569999999998743
No 66
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.65 E-value=4.2e-15 Score=115.63 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=101.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
+++++.+|++|.+|+...++..+..|++.++.+ ..+++.+++.++++++|.+.++|+++..+.+.......+++++|.+
T Consensus 252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v 331 (562)
T PRK05677 252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLT 331 (562)
T ss_pred cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEE
Confidence 688999999999998777788888888877665 5689999999999999999999999999987654444567789999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++||+++++++.+++++.++ +++++.||+||++....
T Consensus 332 ~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~ 368 (562)
T PRK05677 332 LSGGMALQLATAERWKEVTG-CAICEGYGMTETSPVVS 368 (562)
T ss_pred EEcCccCCHHHHHHHHHHcC-CCeeccCCccccCccee
Confidence 99999999999999999886 89999999999885544
No 67
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.65 E-value=2e-15 Score=126.75 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=103.8
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++..|++|..++ +.++.++..|+++++.+ ..+++.+.+.++++++|.+.++|+++..+++......
T Consensus 633 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~ 711 (1296)
T PRK10252 633 HYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG 711 (1296)
T ss_pred hcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc
Confidence 456666 999999999999998 78899999999999986 3589999999999999999999999999886532221
Q ss_pred --CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 --FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 --~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
..++++|.+++||+++++++.++|++.++ .+++|.||+||++..++
T Consensus 712 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~YG~TE~~~~~~ 759 (1296)
T PRK10252 712 ARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNLYGPTEAAVDVS 759 (1296)
T ss_pred ccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeCCCcchhhheee
Confidence 34678999999999999999999998876 89999999999985443
No 68
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.65 E-value=8e-16 Score=118.88 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=112.1
Q ss_pred eccccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC
Q 032003 5 DQETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (149)
Q Consensus 5 ~~~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~ 81 (149)
...++++.+ |+.++...+.|+.|.++..++++.+|+++++.+ ++++..+++.+.++++|.++..|+.++.+.+....
T Consensus 272 ~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~ 351 (626)
T KOG1175|consen 272 SRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQE 351 (626)
T ss_pred cceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccc
Confidence 345566777 999999999999999888999999999999986 35999999999999999999999999977654432
Q ss_pred --CcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccccCC
Q 032003 82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK 136 (149)
Q Consensus 82 --~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 136 (149)
...++++||.+.+.|+|++++..+++.+.++..++.+.||+||+|..++.+..+.
T Consensus 352 ~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~ 408 (626)
T KOG1175|consen 352 DVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGK 408 (626)
T ss_pred cccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCC
Confidence 3344567999999999999999999999987446999999999997776554433
No 69
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.65 E-value=8.5e-15 Score=113.52 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=102.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ +++++..|++|..++ ..++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.......+
T Consensus 216 ~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~ 294 (542)
T PRK06155 216 LEIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAH 294 (542)
T ss_pred cCCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccC
Confidence 45666 899999999999998 5678999999999999889999999999999999999999999999887655555667
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+..|| +++++.+++++.++ .++++.||+||++.++.
T Consensus 295 ~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~ 334 (542)
T PRK06155 295 RVRVALGPG--VPAALHAAFRERFG-VDLLDGYGSTETNFVIA 334 (542)
T ss_pred ceEEEEEcC--CCHHHHHHHHHHcC-CCEEeeecccccCcccc
Confidence 898877665 57889999999887 89999999999986554
No 70
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.64 E-value=3.6e-15 Score=114.34 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=101.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~ 85 (149)
+++.. |+++..+|++|++++.+. +..+..|+++++.++++++.+++.++++++|.+.++|+++..+.+.... ...+
T Consensus 190 ~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 268 (501)
T PRK13390 190 YDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD 268 (501)
T ss_pred hCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC
Confidence 44555 899999999999998443 4456789999999889999999999999999999999999998864322 2345
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.++.||+++++++.+.+++.++ .++++.||+||++.++.
T Consensus 269 ~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 312 (501)
T PRK13390 269 VSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYYSSTEAHGMTF 312 (501)
T ss_pred hhhhheEEEcCCCCCHHHHHHHHHhcC-CceeeeecccccCceEE
Confidence 778999999999999999999998887 88999999999975443
No 71
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.64 E-value=2.9e-15 Score=112.52 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=100.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
++... |+.+...|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.... ..
T Consensus 137 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~ 212 (414)
T PRK08308 137 LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TF 212 (414)
T ss_pred hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cc
Confidence 34455 89999999999999877889999999999999889999999999999999999999999999875432 13
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++.+..||+++++++.+++++. ..++++.||+||++.+..
T Consensus 213 ~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~ 253 (414)
T PRK08308 213 QFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSI 253 (414)
T ss_pred cccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeee
Confidence 58889999999999999999887 368999999999986544
No 72
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.64 E-value=3.8e-15 Score=114.02 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=103.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
++... |+++...|++|..++ ..++.++..|+++++.++ .+++.+++.+++++++.+.++|+++..+.........
T Consensus 177 ~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~ 255 (502)
T TIGR01734 177 FPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQE 255 (502)
T ss_pred CCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccc
Confidence 34455 899999999999998 678899999999999874 5889999999999999999999999877765444455
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
++++++.+.++|+++++++.+++.+.++++++++.||+||++.
T Consensus 256 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~ 298 (502)
T TIGR01734 256 NYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATV 298 (502)
T ss_pred cCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceE
Confidence 6789999999999999999999999998799999999999874
No 73
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.64 E-value=3.5e-15 Score=111.37 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=91.6
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
|++++.+|++|++|..+.++.++..|+++++.+++++..+++.++.+ |++.++|+++..+.+.+ .++++++. +
T Consensus 139 dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i 211 (386)
T TIGR02372 139 RRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-V 211 (386)
T ss_pred CeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-E
Confidence 68999999999999877888899999999998888998888888754 78899999999997643 34667876 5
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+||+++++++++++++. +..++++.||+||++++.+
T Consensus 212 ~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~ 247 (386)
T TIGR02372 212 SSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGL 247 (386)
T ss_pred ecCCCCCHHHHHHHHHh-cccchhheecccccccccc
Confidence 78999999999999876 4246899999999986554
No 74
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.63 E-value=3e-15 Score=118.71 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=92.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-------
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV------- 81 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------- 81 (149)
++++ |++++.+|++|+++.. .....+..|+++++.+ .+++.+++.++++++|+++++|+++..+.+....
T Consensus 265 ~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 342 (666)
T PLN02614 265 ALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF 342 (666)
T ss_pred CCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence 3455 9999999999999984 4566788999998875 5899999999999999999999999987641100
Q ss_pred --------------------------Cc-----------CCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccc
Q 032003 82 --------------------------KK-----------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 82 --------------------------~~-----------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~t 123 (149)
.. ..+ +++|.+.+||+++++++ +++.+.+++++++++||+|
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~T 421 (666)
T PLN02614 343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLT 421 (666)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchH
Confidence 00 011 57999999999999875 5566666658999999999
Q ss_pred cccccc
Q 032003 124 HLYYES 129 (149)
Q Consensus 124 E~~~~~ 129 (149)
|++...
T Consensus 422 E~~~~~ 427 (666)
T PLN02614 422 ESCAGT 427 (666)
T ss_pred hhhhhe
Confidence 987543
No 75
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.63 E-value=7.2e-15 Score=112.42 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=103.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
+++.. ++++...|++|..+. ..++.++..|+++++.++ .+++.+++.++++++|.+..+|++++.+.........
T Consensus 179 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~ 257 (503)
T PRK04813 179 FALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEE 257 (503)
T ss_pred cCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcc
Confidence 34455 899999999999998 677899999999998874 5899999999999999999999999887665544556
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
+++++|.+.++|+++++++.+++.+.+++.++++.||+||++.
T Consensus 258 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~ 300 (503)
T PRK04813 258 HLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATV 300 (503)
T ss_pred cCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchhee
Confidence 7889999999999999999999999997789999999999874
No 76
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.63 E-value=1.1e-14 Score=111.25 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=100.7
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHH--hcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~--~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
..+ |++++.+|++|+.|+...+..++..|+++++.++++++..+..+. ++++|++..+|+++..+.+.+.....+++
T Consensus 173 ~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 252 (488)
T PRK09088 173 VDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR 252 (488)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc
Confidence 444 899999999999999777888999999999998889999998886 48899999999999999876654455678
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++|.+.+||++++.+..+++.+. + +++++.||+||++.+
T Consensus 253 ~l~~~~~gG~~~~~~~~~~~~~~-g-~~v~~~YG~TE~~~~ 291 (488)
T PRK09088 253 HLTALFTGGAPHAAEDILGWLDD-G-IPMVDGFGMSEAGTV 291 (488)
T ss_pred cceEEEecCCCCCHHHHHHHHHh-C-Cceeeeecccccccc
Confidence 99999999999999998888765 4 889999999999854
No 77
>PRK12467 peptide synthase; Provisional
Probab=99.63 E-value=3.8e-15 Score=134.51 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=106.0
Q ss_pred cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC
Q 032003 7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (149)
Q Consensus 7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~ 82 (149)
..+++++ |++++..|++|+.++ +.++.++..|+++++.+. .+++.+++.++++++|++.++|+++..+.+... .
T Consensus 1752 ~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~ 1829 (3956)
T PRK12467 1752 EAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-Q 1829 (3956)
T ss_pred HhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-c
Confidence 3456666 999999999999998 788999999999999863 579999999999999999999999999987432 2
Q ss_pred cCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 83 ~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
..+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus 1830 ~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t 1877 (3956)
T PRK12467 1830 VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVT 1877 (3956)
T ss_pred cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEE
Confidence 345788999999999999999999999887788999999999985443
No 78
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.63 E-value=5.2e-15 Score=114.50 Aligned_cols=119 Identities=24% Similarity=0.312 Sum_probs=102.3
Q ss_pred ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC--CCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~--~~~~ 83 (149)
.+++++ |++++.+|++|.+++.. ..+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++.. ....
T Consensus 217 ~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 296 (536)
T PRK10946 217 ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR 296 (536)
T ss_pred hcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc
Confidence 445666 89999999999988743 5678899999999988889999999999999999999999999987652 2233
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
..++++|.+.+||+++++++.+++.+.++ +++++.||+||+..
T Consensus 297 ~~~~~l~~v~~gg~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~~ 339 (536)
T PRK10946 297 AQLASLKLLQVGGARLSETLARRIPAELG-CQLQQVFGMAEGLV 339 (536)
T ss_pred ccccceeEEEECCCCCCHHHHHHHHHhcC-CeEEEeecccccce
Confidence 45678999999999999999999998887 89999999999753
No 79
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.63 E-value=1.2e-14 Score=113.01 Aligned_cols=116 Identities=23% Similarity=0.360 Sum_probs=101.6
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
++++..+|++|++|.....+..+..|++.++.. ..++..+++.++++++|.+..+|+++..+.+.+.....+++++|.+
T Consensus 259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~ 338 (562)
T PRK12492 259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT 338 (562)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEE
Confidence 577889999999998777777888888877664 5689999999999999999999999999988766556678899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+||+++++++.+++++.++ +++.+.||+||++..++
T Consensus 339 ~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 375 (562)
T PRK12492 339 NSGGTALVKATAERWEQLTG-CTIVEGYGLTETSPVAS 375 (562)
T ss_pred EeccccCCHHHHHHHHHHhC-CceeeccCccccCceee
Confidence 99999999999999998876 89999999999986554
No 80
>PRK12316 peptide synthase; Provisional
Probab=99.62 E-value=4.8e-15 Score=135.68 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=106.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
.+++++ |++++..|++|+.+. +.++.++..|+++++.+. ++++.+++.++++++|++.++|++++.+.+..... .
T Consensus 4729 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-~ 4806 (5163)
T PRK12316 4729 RYELTPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD-G 4806 (5163)
T ss_pred hcCCCcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc-c
Confidence 456666 999999999999998 788999999999999863 38999999999999999999999999998765432 3
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++++|.+++||+++++++.+++.+.+++++++|.||+||++..++
T Consensus 4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 4852 (5163)
T PRK12316 4807 EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVL 4852 (5163)
T ss_pred CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEE
Confidence 6789999999999999999988888777789999999999986543
No 81
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.62 E-value=6.7e-15 Score=113.52 Aligned_cols=117 Identities=26% Similarity=0.444 Sum_probs=99.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+... |+.+..+|++|+.++ ..++ .+..|++.++.+ .++++.+++.++++++|.+.++|++++.+.+.+.....++
T Consensus 202 ~~~~~d~~l~~~p~~~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 279 (528)
T PRK07470 202 GTTEQDASLVVAPLSHGAGI-HQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH 279 (528)
T ss_pred CCCcccEEEEeccchhHHHH-HHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence 3444 899999999999998 4444 567777777664 5789999999999999999999999999988776555678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+++|.+++||++++++..+++.+.++ .++++.||+||++...
T Consensus 280 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~ 321 (528)
T PRK07470 280 SSLRYVIYAGAPMYRADQKRALAKLG-KVLVQYFGLGEVTGNI 321 (528)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHhC-cHHHHhCCCcccCCce
Confidence 89999999999999999999988887 8899999999987543
No 82
>PRK12316 peptide synthase; Provisional
Probab=99.62 E-value=4.3e-15 Score=135.97 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=104.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++..|++|+.++ +.++.++..|+++++.+ .++++.+.+.++++++|++.++|++++.+.+.+. .
T Consensus 690 ~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~ 766 (5163)
T PRK12316 690 AYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--V 766 (5163)
T ss_pred hcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--c
Confidence 456666 999999999999998 78899999999999985 4789999999999999999999999999987543 3
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
.+++++|.+.+||+++++++.+++.+.+++.+++|.||+||++.
T Consensus 767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 810 (5163)
T PRK12316 767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAI 810 (5163)
T ss_pred ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChhee
Confidence 45789999999999999999999988887789999999999984
No 83
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.62 E-value=3.2e-15 Score=118.42 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=90.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC---------------
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------------- 78 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------------- 78 (149)
|++++.+|++|+++... .+.++..|+++++.+ .+++.+++.++++++|+++++|+++..+.+.
T Consensus 267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l 344 (660)
T PLN02861 267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKL 344 (660)
T ss_pred CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999999854 456899999998874 6899999999999999999999999988631
Q ss_pred ----------------------CCCCcC-------CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 79 ----------------------GLVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 79 ----------------------~~~~~~-------~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
+..... .+ .++|.+.+||+++++++.+ +.+.++..+++++||+||+++.
T Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~ 423 (660)
T PLN02861 345 FDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGG 423 (660)
T ss_pred HHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhc
Confidence 000000 11 4789999999999999855 5566664579999999998754
Q ss_pred cc
Q 032003 129 SC 130 (149)
Q Consensus 129 ~~ 130 (149)
++
T Consensus 424 ~~ 425 (660)
T PLN02861 424 CF 425 (660)
T ss_pred ee
Confidence 43
No 84
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.62 E-value=3.5e-15 Score=117.42 Aligned_cols=117 Identities=20% Similarity=0.092 Sum_probs=95.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCH---HHHHHHHHhcCceEEEecHHHHHHHHhCCCC----CcCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KKFD 85 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~---~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~~ 85 (149)
++.+..+|++|++|+...++.++..|+++++.+ .+++ ..+++.++++++|++.++|+++..+++.... ...+
T Consensus 265 ~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~ 344 (624)
T PRK12582 265 PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF 344 (624)
T ss_pred ceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH
Confidence 789999999999998677778999999999976 3443 4567778899999999999999888753211 2234
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhC----C-CCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~----~-~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||+++++++.+++++.+ + ++++++.||+||++.+..
T Consensus 345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~ 394 (624)
T PRK12582 345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT 394 (624)
T ss_pred hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceee
Confidence 67899999999999999999998863 2 267999999999986554
No 85
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.62 E-value=4.3e-15 Score=115.41 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=95.2
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC--------CCC
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLV 81 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------~~~ 81 (149)
.++ |+.++.+|+.|++...+.....+..| +......++..+.+.+++.++|.++++|.+|+.+.+. +..
T Consensus 230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g--~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~ 307 (613)
T COG1022 230 IGPGDRVLSFLPLAHIFERAFEGGLALYGG--VTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV 307 (613)
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHHHhhcc--eEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence 555 99999999999999965433334444 4444456999999999999999999999999887531 100
Q ss_pred C---------------------------------------cCCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeec
Q 032003 82 K---------------------------------------KFDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ 121 (149)
Q Consensus 82 ~---------------------------------------~~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG 121 (149)
+ +..+ .++|++.+||+++++++..+++.. ++++.++||
T Consensus 308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYG 385 (613)
T COG1022 308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYG 385 (613)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEec
Confidence 0 0011 268999999999999999999877 599999999
Q ss_pred cccccccccccccCCCCCcee
Q 032003 122 FEHLYYESCNDYKLKRFDEFC 142 (149)
Q Consensus 122 ~tE~~~~~~~~~~~~~~~~~~ 142 (149)
+||++++.+..++.....+++
T Consensus 386 lTEts~~~~v~~~~~~~~gtv 406 (613)
T COG1022 386 LTETSAVVSVNPPDRFVLGTV 406 (613)
T ss_pred ccccccceEEccccCcccCCc
Confidence 999986665544444444444
No 86
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.62 E-value=1.7e-14 Score=111.03 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=98.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHH-HHhCCC-CCcCCCCCc
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA-LAKHGL-VKKFDLSSL 89 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~-l~~~~~-~~~~~l~~l 89 (149)
++++..+|++|..++ +.++.++..|+++++.+ .+++..+++.++++++|.+..+|..+.. +.+... ....+++++
T Consensus 220 ~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l 298 (533)
T PRK07798 220 MRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSL 298 (533)
T ss_pred ceEEEecchhhhhhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCce
Confidence 789999999999999 68889999999999998 7899999999999999999999865533 333222 233567899
Q ss_pred eEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
|.+.+||+++++++.+++++.+++.++++.||+||++...
T Consensus 299 ~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 338 (533)
T PRK07798 299 FAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGG 338 (533)
T ss_pred EEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccccc
Confidence 9999999999999999999998768999999999986443
No 87
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.62 E-value=8.6e-15 Score=110.24 Aligned_cols=114 Identities=25% Similarity=0.363 Sum_probs=98.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.++.++ |+++...|++|++|+ ..++.++..|+++++.+.+ ..+++.++++++|.+.++|+++..+++.... .
T Consensus 146 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~----~ 218 (436)
T TIGR01923 146 NLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGH----N 218 (436)
T ss_pred hcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC----C
Confidence 345666 999999999999998 6788999999999998755 3899999999999999999999999876432 2
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++. +.++++.||+||++...+
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~ 260 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVT 260 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhcc
Confidence 679999999999999999988764 489999999999986544
No 88
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.62 E-value=7.6e-15 Score=113.72 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=95.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
++.+..+|++|..++ +..+.++..|+++++. +.++..+++.++++++|.+.++|+++..+.+.......+++++|.+.
T Consensus 215 ~~~~~~~p~~h~~~l-~~~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~ 292 (540)
T PRK05857 215 ETTYSPLPATHIGGL-WWILTCLMHGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVG 292 (540)
T ss_pred ceeeecCCccccchH-HHHHHHhhcceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEE
Confidence 789999999999998 4677889999988764 46889999999999999999999999999887655556788999999
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
+||++++....++ .+.++ .++.+.||+||++..
T Consensus 293 ~gG~~~~~~~~~~-~~~~g-~~i~~~YG~TE~~~~ 325 (540)
T PRK05857 293 YGGSRAIAADVRF-IEATG-VRTAQVYGLSETGCT 325 (540)
T ss_pred EcCccCCchhHHH-HHHhC-CeeecccCCCcCCce
Confidence 9999998888754 45665 899999999999754
No 89
>PRK09274 peptide synthase; Provisional
Probab=99.62 E-value=3.8e-15 Score=115.47 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=96.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-------CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-------~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 79 (149)
.+++.+ |+.+...|++|..++ ..|+++++.+ .++++.+++.++++++|+++++|+++..+.+..
T Consensus 209 ~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 280 (552)
T PRK09274 209 DYGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG 280 (552)
T ss_pred HhCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHh
Confidence 345666 899999999887654 3477777754 468999999999999999999999999998765
Q ss_pred CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-CcEEeeecccccccccc
Q 032003 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~ 130 (149)
.....+++++|.+.+||+++++++.+++++.++. +++++.||+||++.++.
T Consensus 281 ~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 332 (552)
T PRK09274 281 EANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS 332 (552)
T ss_pred hhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence 5455678899999999999999999999999963 79999999999985543
No 90
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.61 E-value=1.3e-14 Score=113.29 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=96.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~ 93 (149)
++.+..+|++|..|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.........++++.+.
T Consensus 228 ~~~l~~~pl~h~~g~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 306 (579)
T PLN03102 228 PVYLWTLPMFHCNGW-TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVL 306 (579)
T ss_pred CeEEecCChhhhcch-hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEE
Confidence 788899999999998 5567788999999998888999999999999999999999999999876543333456788899
Q ss_pred EecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
+||+++++++.+++++ ++ .++++.||+||+++.
T Consensus 307 ~gg~~~~~~~~~~~~~-~g-~~i~~~YG~tE~~~~ 339 (579)
T PLN03102 307 TGGSPPPAALVKKVQR-LG-FQVMHAYGLTEATGP 339 (579)
T ss_pred ECCCCCCHHHHHHHHH-cC-CeEEeecCccccCcc
Confidence 9999999999999865 55 899999999998743
No 91
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.60 E-value=9.2e-15 Score=123.60 Aligned_cols=118 Identities=11% Similarity=-0.050 Sum_probs=102.4
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |+++...|++|+.++ +.++.++..|+++++.+. .++..+.+.++++++|++.++|+++..+.... .
T Consensus 450 ~~~~~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~ 525 (1389)
T TIGR03443 450 RFGLSENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---T 525 (1389)
T ss_pred hcCCCCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---c
Confidence 445666 899999999999988 788999999999999863 36899999999999999999999999887532 2
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
.+++++|.+++||++++++..+++++..++.+++|.||+||++..+
T Consensus 526 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 571 (1389)
T TIGR03443 526 TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV 571 (1389)
T ss_pred ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence 4578899999999999999999998887779999999999997543
No 92
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.60 E-value=2.3e-14 Score=110.86 Aligned_cols=118 Identities=24% Similarity=0.297 Sum_probs=99.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.. ....+++
T Consensus 217 ~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~ 294 (540)
T PRK06164 217 YGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFP 294 (540)
T ss_pred cCCCCCCEEEEcCCchhHHHH-HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCc
Confidence 45556 899999999999999 67899999999999999899999999999999999999999999998763 2445688
Q ss_pred CceEEEEec-CCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGA-APLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg-~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+..+| .+...+..+++.+. + +++++.||+||++...+
T Consensus 295 ~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~YG~tE~~~~~~ 336 (540)
T PRK06164 295 SARLFGFASFAPALGELAALARAR-G-VPLTGLYGSSEVQALVA 336 (540)
T ss_pred ceeeeeeccCCcchHHHHHHHhhc-C-Cceecceeeccccceee
Confidence 899887765 55666777776655 4 88999999999985543
No 93
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.59 E-value=5.2e-14 Score=108.92 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=98.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |+++..+|++|..++...++.++..|+++++.++++++.+++.++++++|.+.++|+.+..+++.++......
T Consensus 187 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~ 266 (529)
T PRK07867 187 RFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDAD 266 (529)
T ss_pred hhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccc
Confidence 345566 9999999999999997777789999999999988999999999999999999999999999887654333334
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|. .+||+++++.. +++.+.++ .++++.||+||++....
T Consensus 267 ~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~~YG~TE~~~~~~ 307 (529)
T PRK07867 267 NPLRI-VYGNEGAPGDI-ARFARRFG-CVVVDGFGSTEGGVAIT 307 (529)
T ss_pred cceEE-EecCCCChHHH-HHHHHHhC-CcEEEeecccccccccc
Confidence 56774 46888877664 67777776 89999999999985443
No 94
>PRK05691 peptide synthase; Validated
Probab=99.59 E-value=1.4e-14 Score=131.72 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=105.8
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++..|++|+.++ +.++.++..|+++++.+ ..+++.+.+.++++++|++.++|++++.+.+.+. .
T Consensus 1308 ~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~ 1384 (4334)
T PRK05691 1308 TYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--A 1384 (4334)
T ss_pred hcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--c
Confidence 456666 999999999999998 78999999999999985 4689999999999999999999999999986532 3
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus 1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 1431 (4334)
T PRK05691 1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVT 1431 (4334)
T ss_pred ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeee
Confidence 45789999999999999999999999988789999999999985443
No 95
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.59 E-value=3.7e-14 Score=110.14 Aligned_cols=116 Identities=23% Similarity=0.360 Sum_probs=99.7
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
+++++..|++|.+|+....+.++..|++.++.+ ..++..+++.++++++|.+..+|+++..+.+.+...+.+++++|.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v 334 (560)
T PRK08751 255 EVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMT 334 (560)
T ss_pred ceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheee
Confidence 577888999999998655667777787776654 6789999999999999999999999999988765555678899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+||+++++++.+++++.++ .++++.||+||++..++
T Consensus 335 ~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 371 (560)
T PRK08751 335 LGGGMAVQRSVAERWKQVTG-LTLVEAYGLTETSPAAC 371 (560)
T ss_pred eeCCCCCCHHHHHHHHHHhC-CeEEEeeccccCCCcee
Confidence 99999999999999999886 88999999999985544
No 96
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.58 E-value=1.3e-14 Score=110.48 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=90.0
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL 89 (149)
Q Consensus 10 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 89 (149)
+..+++.++.+|++|.+|+ ..++.++..|+++++.+..+.+.......++++|++.++|+++..+.+.. ..+++++
T Consensus 157 ~~~~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~~l 232 (452)
T PRK07445 157 QLQQVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLAQF 232 (452)
T ss_pred cCCCCceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhhcc
Confidence 4445667889999999998 67789999999999987432222233445788999999999999987632 2357889
Q ss_pred eEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
|.+.+||+++++++.+++++. + .++++.||+||++..
T Consensus 233 ~~i~~gG~~l~~~~~~~~~~~-~-~~l~~~YG~TE~~~~ 269 (452)
T PRK07445 233 RTILLGGAPAWPSLLEQARQL-Q-LRLAPTYGMTETASQ 269 (452)
T ss_pred eEEEECCccCCHHHHHHHHhc-C-CeEecCcchhhhccc
Confidence 999999999999999988764 4 899999999998743
No 97
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.58 E-value=9.1e-15 Score=112.93 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=95.2
Q ss_pred ccCCC-C-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHHhcCceEEEecHHHHHHHHhCCC-
Q 032003 8 TAGEL-D-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (149)
Q Consensus 8 ~~~~~-~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~- 80 (149)
.++.+ + |++++.+|++|++|+ ..++.++..|+++++.+ .+ ++..+++.++++++|.+..+|.++..+.+...
T Consensus 187 ~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~ 265 (525)
T PRK05851 187 RVGLDAATDVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR 265 (525)
T ss_pred HhCCCCCCCeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc
Confidence 34555 4 999999999999999 56789999999999986 34 68899999999999987666655555543221
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHh---CC--CCcEEeeecccccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKN---VP--SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~---~~--~~~i~~~YG~tE~~~~~~ 130 (149)
....+++++|.+.+||+++++++.++|.+. ++ ..++++.||+||++...+
T Consensus 266 ~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~ 320 (525)
T PRK05851 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVT 320 (525)
T ss_pred ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEE
Confidence 233457899999999999999999998774 33 235999999999975443
No 98
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.57 E-value=8.3e-14 Score=110.24 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=99.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..++.|+.+. .++.++..|+++++.++ ++++.+++.++++++|++..+|++++.+.+...
T Consensus 299 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 376 (655)
T PRK03584 299 HCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP 376 (655)
T ss_pred hcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc
Confidence 345666 999999999998654 35689999999999752 589999999999999999999999999876432
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY 127 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~ 127 (149)
....+++++|.+.+||+++++++.+++++.++ +.++.+.||+||++.
T Consensus 377 ~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~ 424 (655)
T PRK03584 377 GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICS 424 (655)
T ss_pred cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhc
Confidence 13357889999999999999999999999884 478999999999753
No 99
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.57 E-value=7.5e-14 Score=108.44 Aligned_cols=116 Identities=22% Similarity=0.333 Sum_probs=100.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
+.+++.+|++|.++.....+.++..|++.++.+ ..+++.+++.++++++|.+.++|+++..+.+.......+++++|.+
T Consensus 253 ~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~ 332 (557)
T PRK07059 253 LNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVA 332 (557)
T ss_pred cEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEE
Confidence 567888999999987667778888888877765 4589999999999999999999999999988766555677899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
..||+++++.+.++|++.++ .++++.||+||++.+++
T Consensus 333 ~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 369 (557)
T PRK07059 333 NGGGMAVQRPVAERWLEMTG-CPITEGYGLSETSPVAT 369 (557)
T ss_pred EeccccCCHHHHHHHHHHhC-CCeeeccccccccchhh
Confidence 99999999999999998886 89999999999986544
No 100
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.57 E-value=9.3e-14 Score=107.98 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=100.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
++++..+|++|.+++....+..+..|+++++.. ..++..+++.++++++|.+.++|+++..+.+.+.....+++++|.+
T Consensus 251 ~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~ 330 (560)
T PRK08974 251 ELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLS 330 (560)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEE
Confidence 678889999999998677778888899877764 5688999999999999999999999999988765555667899999
Q ss_pred EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+||+++++++.++|++.++ .++++.||+||++....
T Consensus 331 ~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~ 367 (560)
T PRK08974 331 VGGGMAVQQAVAERWVKLTG-QYLLEGYGLTECSPLVS 367 (560)
T ss_pred EecCccCCHHHHHHHHHHhC-CcEEeeecccccCceee
Confidence 99999999999999998876 89999999999985544
No 101
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.57 E-value=8.2e-14 Score=108.01 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=98.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |+++..+|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+..+|+.+..++..+.......
T Consensus 185 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~ 264 (540)
T PRK13388 185 RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDAD 264 (540)
T ss_pred HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccc
Confidence 455666 8999999999999986666678999999999888899999999999999999999999999987654322223
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++.+ . |++++++..+++.+.++ .++++.||+||++.++.
T Consensus 265 ~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~ 305 (540)
T PRK13388 265 NPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGYGSSEGAVIVV 305 (540)
T ss_pred cceEEE-E-CCCCCHHHHHHHHHHhC-Cceecccccccccceee
Confidence 456643 3 56778888899988886 89999999999986554
No 102
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.57 E-value=9.8e-14 Score=106.76 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL 89 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 89 (149)
+.. +++++.+|++|..+....++.++..|+++++.++++++.+++.++++++|.+.++|++++.+...+........++
T Consensus 211 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l 290 (517)
T PRK08008 211 LRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCL 290 (517)
T ss_pred CCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccc
Confidence 344 8999999999998887888999999999999999999999999999999999999999999987654433344568
Q ss_pred eEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+.+..+ .+++++..+++.+.++ .++++.||+||++...+
T Consensus 291 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 329 (517)
T PRK08008 291 REVMFY-LNLSDQEKDAFEERFG-VRLLTSYGMTETIVGII 329 (517)
T ss_pred eeeEEe-cCCCHHHHHHHHHHhC-CeEEeeccccccccccc
Confidence 877765 4789999999998887 89999999999975433
No 103
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=3.4e-15 Score=109.04 Aligned_cols=123 Identities=29% Similarity=0.373 Sum_probs=110.2
Q ss_pred ceeeccccCCCC-cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC
Q 032003 2 VTMDQETAGELD-YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79 (149)
Q Consensus 2 ~~~~~~~~~~~~-~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 79 (149)
+.++....+++. .+.++.+|..|-+.+. -+.++.++.|+++|+.+..+|+..+.++++|++|+..++|.....++...
T Consensus 218 v~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~ 297 (542)
T COG1021 218 VRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAA 297 (542)
T ss_pred eeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhh
Confidence 345666678888 8999999999966542 35678999999999999999999999999999999999999998888887
Q ss_pred CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL 125 (149)
Q Consensus 80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 125 (149)
+....+++|||.+..||+.++++..++....++ +.+.+.|||.|.
T Consensus 298 e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQQVFGMAEG 342 (542)
T COG1021 298 EWERADLSSLRLLQVGGARLSATLARRVPAVLG-CQLQQVFGMAEG 342 (542)
T ss_pred hcccCCchheeEEeecCcccCHHHHhhchhhhC-chHHHHhhhhhh
Confidence 778899999999999999999999999999998 999999999994
No 104
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.55 E-value=9.2e-14 Score=104.85 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=94.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~ 85 (149)
.+.++ |++++..++.+..+.....+.....|++++..+..+++.+++.++++++|++.++|+++..+++....... .
T Consensus 114 ~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~ 193 (422)
T TIGR02155 114 AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA 193 (422)
T ss_pred cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc
Confidence 46666 88887776655444334456678889999888777889999999999999999999999998764322222 2
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
..++|.+++||+++++++.+.+++.++ +++++.||+||++
T Consensus 194 ~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~tE~~ 233 (422)
T TIGR02155 194 QTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLSEVI 233 (422)
T ss_pred cCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccchhhc
Confidence 357999999999999999999999997 8999999999984
No 105
>PRK05691 peptide synthase; Validated
Probab=99.55 E-value=7.8e-14 Score=126.95 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=104.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |+++...|++|+.++ +.++.++..|+++++.+. .++..+.+.++++++|++..+|+++..++... .
T Consensus 3904 ~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~ 3979 (4334)
T PRK05691 3904 YLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---R 3979 (4334)
T ss_pred hcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---c
Confidence 456677 999999999999998 889999999999999863 57999999999999999999999999887542 2
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
..++++|.+.+||+++++++.++|.+.+++.+++|.||+||++..+
T Consensus 3980 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691 3980 QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDV 4025 (4334)
T ss_pred ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEE
Confidence 3477899999999999999999999988889999999999998544
No 106
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.54 E-value=3.9e-14 Score=111.60 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=96.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHHhcCc---eEEEecHHHHHHHHhC--
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIEKHRV---THIWVVPPLILALAKH-- 78 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~~~~~---t~~~~~P~~~~~l~~~-- 78 (149)
+++.+ |+++..+|++|+.|+. ..+.++..|+++++.+ .+ ++..+++.++++++ +.+..+|+++..+...
T Consensus 216 ~~~~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~ 294 (631)
T PRK07769 216 LEGQEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG 294 (631)
T ss_pred cCCCCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence 45555 8999999999999994 5566777899988875 34 89999999999886 7888999988776642
Q ss_pred -CCC--CcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeecccccccccc
Q 032003 79 -GLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 79 -~~~--~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~ 130 (149)
+.. ...+++++|.+.+||+++++++.+++.+.++ ...+++.||+||++...+
T Consensus 295 ~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 354 (631)
T PRK07769 295 LPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVS 354 (631)
T ss_pred cchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEe
Confidence 111 1356889999999999999999999998873 235999999999875444
No 107
>PLN02479 acetate-CoA ligase
Probab=99.54 E-value=1.7e-13 Score=106.75 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=93.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc-CCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FDLS 87 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~ 87 (149)
++.+ |+.+..+|++|+.++.......+..|.+++ ...++++.+++.++++++|++.++|+++..+.+...... .+++
T Consensus 232 ~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 310 (567)
T PLN02479 232 GMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLP 310 (567)
T ss_pred CCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccccc
Confidence 4455 899999999999998554444566665554 456899999999999999999999999999987543222 2568
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
+++.+.++|+++++++.+++.+. + .++++.||+||+++
T Consensus 311 ~l~~~~~~G~~~~~~~~~~~~~~-~-~~~~~~yG~tE~~~ 348 (567)
T PLN02479 311 RVVHVMTAGAAPPPSVLFAMSEK-G-FRVTHTYGLSETYG 348 (567)
T ss_pred ceeEEEEcCCCCCHHHHHHHHhc-C-Cceecccccccccc
Confidence 89999999999999999999875 4 88999999999853
No 108
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.52 E-value=3e-13 Score=105.26 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=99.3
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL 89 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 89 (149)
..+ |+++..+|++|++|+...++.++..|+++++.++++++.+++.++++++|.+..+|..+..+.+.+.....+++++
T Consensus 248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l 327 (567)
T PRK06178 248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSL 327 (567)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchh
Confidence 444 8999999999999987778899999999999998999999999999999999999999999987665555567788
Q ss_pred eEEEE--ecCCCCHHHHHHHHHhCCCCcEE-eeecccccccc
Q 032003 90 KLVGS--GAAPLGKELMEECAKNVPSATVI-QVVQFEHLYYE 128 (149)
Q Consensus 90 r~~~~--gg~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~ 128 (149)
+.+.. .+++++++..+++++.++ ..++ +.||+||++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~ 368 (567)
T PRK06178 328 RQVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTC 368 (567)
T ss_pred eeeeeccccccCCHHHHHHHHHHhC-Cccccccccccccccc
Confidence 87644 458999999999999887 5445 57999998743
No 109
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.51 E-value=4.9e-13 Score=103.54 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=91.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS 88 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 88 (149)
++.. ++.++.+|++|..|+...++..+ .|++.+..++++++.+++.++++++|++.++|+++..+++.+......+.+
T Consensus 219 ~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 297 (545)
T PRK08162 219 GMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDH 297 (545)
T ss_pred CCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCcc
Confidence 3444 88999999999999855444444 555655666789999999999999999999999999998765443334555
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
.+.+..+|++++++..+++++. + .++++.||+||+++
T Consensus 298 ~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~YG~tE~~~ 334 (545)
T PRK08162 298 PVHAMVAGAAPPAAVIAKMEEI-G-FDLTHVYGLTETYG 334 (545)
T ss_pred ceEEEECCCCCCHHHHHHHHHh-C-CceeecccccccCc
Confidence 6677899999999999998775 4 89999999999853
No 110
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.51 E-value=2.3e-13 Score=107.93 Aligned_cols=116 Identities=24% Similarity=0.248 Sum_probs=90.5
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC---------
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--------- 80 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--------- 80 (149)
+++ |++++.+|++|+++... ...++..|+++++.+. +++.+.+.++++++|++.++|.++..+.+...
T Consensus 263 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~ 340 (660)
T PLN02430 263 MTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR 340 (660)
T ss_pred CCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 445 99999999999999854 4567889999987754 78899999999999999999999988764100
Q ss_pred ----------------------CCcC---C----------C-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccc
Q 032003 81 ----------------------VKKF---D----------L-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEH 124 (149)
Q Consensus 81 ----------------------~~~~---~----------l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE 124 (149)
.... + + .++|.+.+||+++++++.++++. +++.+++++||+||
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~-~~~~~i~~~YG~TE 419 (660)
T PLN02430 341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLTE 419 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH-hcCCCeeeecchhh
Confidence 0000 0 1 57999999999999998766654 44478999999999
Q ss_pred ccccc
Q 032003 125 LYYES 129 (149)
Q Consensus 125 ~~~~~ 129 (149)
+++..
T Consensus 420 ~~~~~ 424 (660)
T PLN02430 420 TLGPT 424 (660)
T ss_pred hhhce
Confidence 87543
No 111
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.51 E-value=1.6e-13 Score=109.45 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=87.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC------CC--HHHHHHHHHhcCceEEEecHHHHHHHHhCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK------FD--LEMFLRAIEKHRVTHIWVVPPLILALAKHGL 80 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~------~~--~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~ 80 (149)
++.+ |+++..+|++|+++... ....+..|+++..... ++ ++.+++.++++++|++.++|.++..+.+...
T Consensus 288 ~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~ 366 (696)
T PLN02387 288 KLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR 366 (696)
T ss_pred CCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence 4455 99999999999999844 3445666666655332 11 2445678999999999999999998864210
Q ss_pred CC-------------------------------c---------------CCC-CCceEEEEecCCCCHHHHHHHHHhCCC
Q 032003 81 VK-------------------------------K---------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPS 113 (149)
Q Consensus 81 ~~-------------------------------~---------------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~ 113 (149)
.. . ..+ +++|.+.+||+++++++.++++..++
T Consensus 367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g- 445 (696)
T PLN02387 367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG- 445 (696)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-
Confidence 00 0 001 57999999999999999988887776
Q ss_pred CcEEeeecccccccccc
Q 032003 114 ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 114 ~~i~~~YG~tE~~~~~~ 130 (149)
++++++||+||++..++
T Consensus 446 ~~v~~~YG~TEt~~~~~ 462 (696)
T PLN02387 446 APIGQGYGLTETCAGAT 462 (696)
T ss_pred CCeeEeechhhccccee
Confidence 89999999999975443
No 112
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.50 E-value=4.5e-13 Score=106.16 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..|++|+.+. + ++.++..|+++++.++ .+++.+++.++++++|++..+|++++.+.+...
T Consensus 300 ~~~~~~~d~~~~~~~~~~~~~~-~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~ 377 (652)
T TIGR01217 300 HCDLGPGDRLFYYTTTGWMMWN-W-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP 377 (652)
T ss_pred ccCCCCCcEEEEeCCcchhhhH-H-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc
Confidence 346666 999999999998653 3 4589999999999852 378999999999999999888888877755321
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-CcEEeeecccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVVQFEHLY 126 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~i~~~YG~tE~~ 126 (149)
....+++++|.+.+||+++++++.+++++.++. ..+.+.||+||++
T Consensus 378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~ 424 (652)
T TIGR01217 378 ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDIC 424 (652)
T ss_pred cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHh
Confidence 234578999999999999999999999888752 4677899999974
No 113
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.50 E-value=8.7e-13 Score=97.38 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=93.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEc---CCCCHHHHHHHHHhcC--ceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDLSS 88 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~---~~~~~~~~~~~l~~~~--~t~~~~~P~~~~~l~~~~~~~~~~l~~ 88 (149)
++.+...|++|+.|+ ..++.++..|+++++. +.++++.+++.+++++ .++...+|..+..++..+. ...++++
T Consensus 75 ~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~ 152 (358)
T PRK07824 75 GQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAE 152 (358)
T ss_pred CeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCccc
Confidence 778899999999998 6678899999998873 3678999999999998 5666778988888776543 2346789
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+|.+.+||+++++++.+++.+. + +++++.||+||++..+
T Consensus 153 l~~i~~gG~~l~~~~~~~~~~~-~-~~v~~~YG~TE~~~~~ 191 (358)
T PRK07824 153 LDAVLVGGGPAPAPVLDAAAAA-G-INVVRTYGMSETSGGC 191 (358)
T ss_pred ceEEEECCCCCCHHHHHHHHhc-C-CcEEecccCCccCCCc
Confidence 9999999999999999998764 4 8999999999987544
No 114
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.45 E-value=6.4e-13 Score=106.05 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=83.7
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHH-------HHHhcCceEEEecHHHHHHHHhCCCC-----
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV----- 81 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~l~~~~~t~~~~~P~~~~~l~~~~~~----- 81 (149)
|++++.+|++|+++.. .....+..|+++++. +++.+.+ .++++++|++.++|.+++.+.+....
T Consensus 311 d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~ 386 (700)
T PTZ00216 311 ETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPV 386 (700)
T ss_pred CEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhcc
Confidence 8999999999999974 445567778877663 4555554 68899999999999999887542100
Q ss_pred --------------------CcC----------------CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003 82 --------------------KKF----------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL 125 (149)
Q Consensus 82 --------------------~~~----------------~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 125 (149)
... .-+++|.+.+||+++++++.++++..++ +++++||+||+
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TEt 464 (700)
T PTZ00216 387 GSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTET 464 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCcccc
Confidence 000 0157999999999999999988877654 89999999999
Q ss_pred ccccc
Q 032003 126 YYESC 130 (149)
Q Consensus 126 ~~~~~ 130 (149)
++..+
T Consensus 465 ~~~~~ 469 (700)
T PTZ00216 465 VCCGG 469 (700)
T ss_pred ccccc
Confidence 75443
No 115
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.44 E-value=5.5e-13 Score=104.87 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=89.2
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHH--hcCceEEEecHHHHHHHHhCCC---
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL--- 80 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~--~~~~t~~~~~P~~~~~l~~~~~--- 80 (149)
+.+ ++.++.+|++|..|+.. .+.++..|+++++.. .+ +|..+++.++ +++++.+..+|+++..+.....
T Consensus 232 ~~~~~~~l~~~Pl~h~~g~~~-~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~ 310 (612)
T PRK12476 232 LDRNTHGVSWLPLYHDMGLSM-IGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA 310 (612)
T ss_pred CCCCceEEEeCCcccccchHH-HHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh
Confidence 444 89999999999999844 444444555555543 23 8999999994 5889999999998888765321
Q ss_pred -CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccc
Q 032003 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYES 129 (149)
Q Consensus 81 -~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~ 129 (149)
....+++++| +.+||+++++++.+++++.++ ..++.+.||+||++...
T Consensus 311 ~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 364 (612)
T PRK12476 311 EGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFV 364 (612)
T ss_pred hhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheee
Confidence 1234678899 999999999999999998772 23589999999987443
No 116
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.42 E-value=3.9e-12 Score=96.73 Aligned_cols=110 Identities=25% Similarity=0.262 Sum_probs=90.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.+ |+++...|++|.+|+ ..++.++..|+++++.+. ..+.+.+ .++|.+..+|+++..+...... ..
T Consensus 171 ~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~ 240 (458)
T PRK09029 171 MPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PL 240 (458)
T ss_pred CCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc----CC
Confidence 44555 899999999999998 566788999999998874 4466666 3789999999999999876432 34
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++.+. + .++++.||+||++...+
T Consensus 241 ~l~~i~~gG~~~~~~~~~~~~~~-g-~~~~~~YG~tE~~~~~~ 281 (458)
T PRK09029 241 SLKAVLLGGAAIPVELTEQAEQQ-G-IRCWCGYGLTEMASTVC 281 (458)
T ss_pred cceEEEECCCCCCHHHHHHHHHc-C-CcEeccccccccCccee
Confidence 69999999999999999998765 4 89999999999986544
No 117
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.41 E-value=1.1e-12 Score=102.28 Aligned_cols=114 Identities=13% Similarity=0.231 Sum_probs=90.5
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHH-HhC---CCCCcCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILAL-AKH---GLVKKFD 85 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l-~~~---~~~~~~~ 85 (149)
+++++..|++|..|+...++.++..|+++++.++ .+|+.+++.+++++++.. .+|.++..+ ... ......+
T Consensus 208 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 286 (578)
T PRK05850 208 TTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLD 286 (578)
T ss_pred ceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcc
Confidence 7899999999999987788999999999998864 279999999999999865 555554333 321 1112345
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeecccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYE 128 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~ 128 (149)
++++|.+.+||+++++++.+++.+.++ +.++++.||+||++..
T Consensus 287 ~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 334 (578)
T PRK05850 287 LGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY 334 (578)
T ss_pred hhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence 778999999999999999999988763 2468999999998743
No 118
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=99.41 E-value=6.5e-12 Score=97.78 Aligned_cols=115 Identities=22% Similarity=0.225 Sum_probs=92.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC-------C-------
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-------G------- 79 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~-------~------- 79 (149)
|+++..+|++|++--... ...+..|+++-+.. -|+..+.+.+++.++|.+.++|.++.++.+. .
T Consensus 303 dv~lSyLPLAHi~er~~~-~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l 380 (691)
T KOG1256|consen 303 DVYLSYLPLAHIFERVVE-LYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKL 380 (691)
T ss_pred ceEEEeCcHHHHHHHHHH-HhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHH
Confidence 899999999999998554 45568899998887 4889999999999999999999998887541 0
Q ss_pred --------C---C-CcCCC-------------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 80 --------L---V-KKFDL-------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 80 --------~---~-~~~~l-------------------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
. . ..... ..+|.+.+|++|+++++...++..++ +++.++||+|||++.
T Consensus 381 ~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~g 459 (691)
T KOG1256|consen 381 FNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSAG 459 (691)
T ss_pred HHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCCc
Confidence 0 0 00011 14889999999999999999999987 999999999999854
Q ss_pred ccc
Q 032003 129 SCN 131 (149)
Q Consensus 129 ~~~ 131 (149)
++.
T Consensus 460 ~~~ 462 (691)
T KOG1256|consen 460 TTL 462 (691)
T ss_pred eEe
Confidence 443
No 119
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.37 E-value=5.8e-12 Score=97.67 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=93.8
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCC----CCCcCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFD 85 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~ 85 (149)
|++++.+|++|..|+...+..++..|+++++.+. .++..+.+.+++++++.+..+|..+..+.+.. .....+
T Consensus 195 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (545)
T PRK07768 195 DVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD 274 (545)
T ss_pred ceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC
Confidence 7999999999999987677788999999988763 37888999999999999888888776665421 112356
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHh---CCC--CcEEeeeccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKN---VPS--ATVIQVVQFEHLYYES 129 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~---~~~--~~i~~~YG~tE~~~~~ 129 (149)
++++|.+..||+++++++.+++.+. ++. .++++.||+||++..+
T Consensus 275 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~ 323 (545)
T PRK07768 275 LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAV 323 (545)
T ss_pred chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEE
Confidence 7899999999999999999998774 431 3599999999998544
No 120
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.36 E-value=7.9e-12 Score=95.12 Aligned_cols=115 Identities=17% Similarity=0.060 Sum_probs=90.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~ 85 (149)
.++++ |+++...|..+..|......++...|++++... ..+..++.++++++|.+.++|+.+..+++....... .
T Consensus 125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~--~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~ 202 (445)
T TIGR03335 125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG--KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA 202 (445)
T ss_pred cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC--chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence 36677 899999898887665344466778888876443 235678999999999999999988877654322221 2
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
..++|.+++||+++++++.+++.+.++ +++++.||+||++
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~YG~TE~~ 242 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELWG-CEVYNTYGSTEGT 242 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecCChhhhh
Confidence 357999999999999999999999887 9999999999986
No 121
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.35 E-value=5.6e-12 Score=98.57 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=95.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++.+ |+++..+|++|+.|+...++.++..|+++++.+. .++..+++.+++++++....+|..+..+.....
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~ 291 (579)
T PRK09192 212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK 291 (579)
T ss_pred cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence 456666 9999999999999997677788999999977652 368999999999999987776665554443221
Q ss_pred -CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-----CcEEeeecccccccccc
Q 032003 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 81 -~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-----~~i~~~YG~tE~~~~~~ 130 (149)
....+++++|.+.+||+++++++.+++.+.++. ..+++.||+||++...+
T Consensus 292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~ 347 (579)
T PRK09192 292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVS 347 (579)
T ss_pred cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEe
Confidence 123567899999999999999999999887641 35899999999975443
No 122
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.01 E-value=2.6e-09 Score=80.04 Aligned_cols=119 Identities=19% Similarity=0.162 Sum_probs=88.4
Q ss_pred ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc--
Q 032003 8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-- 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-- 83 (149)
..|... |++..+... .+..|+ ....++-..|++++-..+-+.+..+++++++++|.+.++|+.+..+++..+...
T Consensus 128 ~~g~~~gd~v~~~~~yGl~tgg~-~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~ 206 (438)
T COG1541 128 SAGVRKGDKVQNAYGYGLFTGGL-GLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID 206 (438)
T ss_pred HccCCCCCEEEEEeeeccccCCc-hhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC
Confidence 345555 655554432 122222 223445556777765555678999999999999999999999999987655442
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
.+-.++|.+++|+|+.++++.+.+.++++ ++.++.||.||..+.
T Consensus 207 ~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYGltE~~g~ 250 (438)
T COG1541 207 PDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYGLTEGFGP 250 (438)
T ss_pred hhhcceeEEEEecccCCHHHHHHHHHHhC-CceeeccccccccCC
Confidence 23357999999999999999999999998 999999999998543
No 123
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=7.2e-09 Score=82.06 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.6
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.++.+. |+++...++.++.+. +.++.++..|+++++.+. .+++.+.+.++++++|.+..+|..+..++.......
T Consensus 401 ~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~ 479 (642)
T COG1020 401 RFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD 479 (642)
T ss_pred hcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc
Confidence 356666 899999999999988 899999999999999873 589999999999999999999999999987622211
Q ss_pred --CCCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003 84 --FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY 127 (149)
Q Consensus 84 --~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~ 127 (149)
.....+|.+.+||++++.++.+.+.+..+ ...+.+.||+||+..
T Consensus 480 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~ 526 (642)
T COG1020 480 LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATL 526 (642)
T ss_pred ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhh
Confidence 22234899999999999999998887754 368999999999653
No 124
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=98.99 E-value=4.6e-10 Score=85.38 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=84.6
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC-----C---HHHHHHHHHhcCceEEEecHHHHHHHHhCC-
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF-----D---LEMFLRAIEKHRVTHIWVVPPLILALAKHG- 79 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~-----~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~- 79 (149)
.+.+ |+++..+|+.|++-+... +.++..|+++=-.+.. + .+.----+.+.++|.+.++|..+.++.+.-
T Consensus 275 ~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl 353 (678)
T KOG1180|consen 275 ELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL 353 (678)
T ss_pred ccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence 4455 999999999999999776 4667777776544321 1 011112346789999999999998875410
Q ss_pred -----------------------CCCcCCC------------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEe
Q 032003 80 -----------------------LVKKFDL------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118 (149)
Q Consensus 80 -----------------------~~~~~~l------------------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~ 118 (149)
......+ -.+|++++||+|+++++.+.+.-.+. +++.+
T Consensus 354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~q 432 (678)
T KOG1180|consen 354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQ 432 (678)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccc
Confidence 0000000 15999999999999999988877765 79999
Q ss_pred eecccccccccc
Q 032003 119 VVQFEHLYYESC 130 (149)
Q Consensus 119 ~YG~tE~~~~~~ 130 (149)
+||.||++..++
T Consensus 433 GYGLTEtca~~t 444 (678)
T KOG1180|consen 433 GYGLTETCAAAT 444 (678)
T ss_pred cccccchhcccE
Confidence 999999975554
No 125
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=98.89 E-value=6.6e-09 Score=78.67 Aligned_cols=80 Identities=19% Similarity=0.116 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003 48 FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY 127 (149)
Q Consensus 48 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 127 (149)
.+.+..++.+++++++.+.+.|+.+..+++..+....+ .+++.++++||+++++..+.+++.|| +++++.||+|| |.
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~ 250 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GF 250 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hh
Confidence 35788999999999999999999999998754333323 36889999999999999999999998 99999999999 54
Q ss_pred ccc
Q 032003 128 ESC 130 (149)
Q Consensus 128 ~~~ 130 (149)
+++
T Consensus 251 la~ 253 (430)
T TIGR02304 251 LAS 253 (430)
T ss_pred eEE
Confidence 443
No 126
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.89 E-value=4.1e-09 Score=73.58 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=50.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCce
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t 63 (149)
..++++ |+++ .+|++|++|+...++.++..|+++++.++|+++.+++.++++|+|
T Consensus 172 ~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 172 AAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred hcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 456676 9999 999999999988899999999999999999999999999999987
No 127
>PTZ00297 pantothenate kinase; Provisional
Probab=98.42 E-value=1.5e-06 Score=74.26 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=53.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 77 (149)
|+++..+|++|+++. ...+..+..|+++.. ++++.+++.++++++|++.++|.++..+.+
T Consensus 646 D~~Ls~LPLaHI~er-~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~ 705 (1452)
T PTZ00297 646 HLMVHFTPFAMLFNR-VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRL 705 (1452)
T ss_pred CEEEEechHHHHHHH-HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHH
Confidence 999999999999996 456778899999863 478999999999999999999999998754
No 128
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=94.82 E-value=0.3 Score=36.75 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=57.4
Q ss_pred HhcCCceEEEcC-CCCHHHHHHHH----HhcCceEEEecHHHHHHHHhCCCCCc--CCCC-CceEEEEecC------CCC
Q 032003 35 QLQKGSCIILMA-KFDLEMFLRAI----EKHRVTHIWVVPPLILALAKHGLVKK--FDLS-SLKLVGSGAA------PLG 100 (149)
Q Consensus 35 ~l~~G~~~v~~~-~~~~~~~~~~l----~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~-~lr~~~~gg~------~~~ 100 (149)
....+..-.+-+ .++.+.+.+.+ ++.++..++++|.++-.++...+..+ ..++ ..+.+..||- .++
T Consensus 161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~ 240 (365)
T PF04443_consen 161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS 240 (365)
T ss_pred hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence 344555544432 46777666655 45668889998887766654322222 2333 3445555653 354
Q ss_pred H-HHHHHHHHhCCC---CcEEeeecccccccccc
Q 032003 101 K-ELMEECAKNVPS---ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 101 ~-~~~~~~~~~~~~---~~i~~~YG~tE~~~~~~ 130 (149)
+ +..+.+.+.+|. -++++.|||||.....+
T Consensus 241 r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~ 274 (365)
T PF04443_consen 241 REEFYARLQEVFGVIPIENIYDMYGMTELNSQAY 274 (365)
T ss_pred HHHHHHHHHHHHCCCCHHHeeeeeeccccchhhe
Confidence 4 555667777873 37999999999765444
No 129
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.31 E-value=3.2 Score=35.63 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=63.7
Q ss_pred HHhHh-cCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC-------------cCCCCCceEEEE
Q 032003 32 TCGQL-QKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-------------KFDLSSLKLVGS 94 (149)
Q Consensus 32 ~~~~l-~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-------------~~~l~~lr~~~~ 94 (149)
.+.++ .+|..+..+.. -++.++.+.+++++++..+.+|++.+.++...... ....+.++....
T Consensus 255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~ 334 (1032)
T KOG1178|consen 255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVL 334 (1032)
T ss_pred HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeee
Confidence 34444 44544444432 24899999999999999999999987776533220 111236899999
Q ss_pred ecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 95 GAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 95 gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
+|++...++...+...+...-...-|+.+|..+-.
T Consensus 335 ~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~ 369 (1032)
T KOG1178|consen 335 GGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLV 369 (1032)
T ss_pred cCCccchhhhhhhhhcccceeeeecccCCCCccce
Confidence 99999998887554444322233347777765433
No 130
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.61 E-value=16 Score=25.04 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=53.6
Q ss_pred cEEEEecch--hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHH------HHHHHhCCCCCcC
Q 032003 14 YVFLCVLPL--FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKF 84 (149)
Q Consensus 14 ~~~l~~~p~--~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~------~~~l~~~~~~~~~ 84 (149)
.+++..++- .|..|.......--..|-.++.. ....++.+.+.++++++..+...-++ +.++.+.- +..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l--~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKL--KEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHH--HHc
Confidence 344445444 78888854444444667777755 46688999999999999887764321 12222211 111
Q ss_pred CC-CCceEEEEecCCCCHHHH
Q 032003 85 DL-SSLKLVGSGAAPLGKELM 104 (149)
Q Consensus 85 ~l-~~lr~~~~gg~~~~~~~~ 104 (149)
.+ +++ .++.||.+++++..
T Consensus 163 ~~~~~v-~i~vGG~~~~~~~~ 182 (197)
T TIGR02370 163 GYRDSV-KFMVGGAPVTQDWA 182 (197)
T ss_pred CCCCCC-EEEEEChhcCHHHH
Confidence 12 234 47789999987543
No 131
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.31 E-value=7.5 Score=25.01 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~ 68 (149)
.|..|........-..|-.++-.- ...++.+.+.+.++++..+...
T Consensus 15 ~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 15 CHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 688887544444446777777664 5679999999999999887764
No 132
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=77.06 E-value=2 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.2
Q ss_pred eEEEEecCCCCHHHHHHHHHhCC
Q 032003 90 KLVGSGAAPLGKELMEECAKNVP 112 (149)
Q Consensus 90 r~~~~gg~~~~~~~~~~~~~~~~ 112 (149)
+++-++|.|++.+..+.++..++
T Consensus 22 ~wvSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 22 KWVSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred HheeeCCeeCCHHHHHHHHHHHh
Confidence 36789999999999999988876
No 133
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=75.80 E-value=23 Score=24.26 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=50.7
Q ss_pred EEEEecc-hhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHH---HHHHHHhCCC-CCcCCC-C
Q 032003 15 VFLCVLP-LFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP---LILALAKHGL-VKKFDL-S 87 (149)
Q Consensus 15 ~~l~~~p-~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~---~~~~l~~~~~-~~~~~l-~ 87 (149)
+++.+.| =.|..|.......--..|-.++-. ....++.+.+.++++++..+...-+ .+..+.+.-+ .+.... .
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~ 164 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRD 164 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCc
Confidence 3444444 378888744433334677777654 4568999999999999988776432 2222211100 011111 1
Q ss_pred CceEEEEecCCCCHHH
Q 032003 88 SLKLVGSGAAPLGKEL 103 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~ 103 (149)
.+ .++.||.+++++.
T Consensus 165 ~~-~i~vGG~~~~~~~ 179 (201)
T cd02070 165 KV-KVMVGGAPVNQEF 179 (201)
T ss_pred CC-eEEEECCcCCHHH
Confidence 34 4778888888764
No 134
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.85 E-value=27 Score=24.27 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=54.8
Q ss_pred EEEEecc-hhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHH---HHHHHhCCC-CCcCCCCC
Q 032003 15 VFLCVLP-LFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL---ILALAKHGL-VKKFDLSS 88 (149)
Q Consensus 15 ~~l~~~p-~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~---~~~l~~~~~-~~~~~l~~ 88 (149)
+++.+.+ =.|.-|.......--..|-.++-.- ...++.+.+.++++++..+...-.+ ...+.+.-+ .+...+ .
T Consensus 91 vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~-~ 169 (213)
T cd02069 91 IVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGI-K 169 (213)
T ss_pred EEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCC-C
Confidence 3443333 3788887554444446777777664 5789999999999999887764322 222211100 011112 3
Q ss_pred ceEEEEecCCCCHHHHHH
Q 032003 89 LKLVGSGAAPLGKELMEE 106 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~ 106 (149)
++ ++.||.+++++..+.
T Consensus 170 ~~-i~vGG~~~~~~~~~~ 186 (213)
T cd02069 170 IP-LLIGGAATSRKHTAV 186 (213)
T ss_pred Ce-EEEEChhcCHHHHhh
Confidence 43 678999999888765
No 135
>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]. These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane
Probab=73.72 E-value=1.2 Score=17.37 Aligned_cols=8 Identities=0% Similarity=-0.438 Sum_probs=6.4
Q ss_pred eecccccc
Q 032003 119 VVQFEHLY 126 (149)
Q Consensus 119 ~YG~tE~~ 126 (149)
+||+|++.
T Consensus 1 GYGSTqTA 8 (16)
T PF00818_consen 1 GYGSTQTA 8 (16)
T ss_pred CCCccccc
Confidence 59999874
No 136
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=67.40 E-value=34 Score=25.57 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=43.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~ 67 (149)
.|++. |++....|- +...+ ..+++.+..|+..+..+ ..+.+.+.+.+++.++..++.
T Consensus 41 ~g~~~~~~V~i~~~n-~~~~~-~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 41 LGVKKGDRVAILLPN-SIEFV-VAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp TTSSTTSEEEEEESS-SHHHH-HHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEE
T ss_pred hCCCccccccccCCc-cceee-eeecccccccccccccccccccccccccccccceeEEEE
Confidence 36665 766666663 34434 56789999999999885 678999999999999999996
No 137
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.49 E-value=14 Score=24.57 Aligned_cols=14 Identities=0% Similarity=-0.171 Sum_probs=5.7
Q ss_pred ceEEEecHHHHHHH
Q 032003 62 VTHIWVVPPLILAL 75 (149)
Q Consensus 62 ~t~~~~~P~~~~~l 75 (149)
+-.+...|..+..+
T Consensus 51 ifllG~~~~~~~~~ 64 (172)
T PF03808_consen 51 IFLLGGSEEVLEKA 64 (172)
T ss_pred EEEEeCCHHHHHHH
Confidence 33333344444433
No 138
>PRK07788 acyl-CoA synthetase; Validated
Probab=65.39 E-value=59 Score=25.59 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=49.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
|+.+ |++...++ +..-.+ ..+++.+..|+.++..+ ...++.+...+++.++..++..+.....+.
T Consensus 95 gi~~gd~V~i~~~-n~~~~~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 161 (549)
T PRK07788 95 GVRAGDGVAVLAR-NHRGFV-LALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLS 161 (549)
T ss_pred CCCCCCEEEEEcC-CCHHHH-HHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHH
Confidence 5665 77776665 444444 56789999999999885 578899999999999999998877665553
No 139
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=63.78 E-value=78 Score=27.79 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=37.1
Q ss_pred cEEEEecchhhH-HHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc--CceEEEecH
Q 032003 14 YVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP 69 (149)
Q Consensus 14 ~~~l~~~p~~h~-~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~--~~t~~~~~P 69 (149)
.++++..|+++- .-....+..++..|.++++-|. . ....+.+.+++- ....+..+|
T Consensus 686 GVv~~IsPwNfPlai~~~~i~aALaaGNtVIlKPse~tpl~a~~l~~ll~eAGlP~gvl~lv~ 748 (1038)
T PRK11904 686 GVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKDVLQLLP 748 (1038)
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHcCCEEEeeCCCcCHHHHHHHHHHHHHhCcCcceEEEee
Confidence 789999999884 3334667799999999988653 2 345566666663 333444443
No 140
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=63.03 E-value=46 Score=24.72 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=48.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.+.+. |++....|-. .... ..+++.+..|..++..+ ....+.+...+++.++..++..+.....+
T Consensus 20 ~g~~~gd~v~l~~~n~-~~~~-~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 86 (408)
T TIGR01733 20 GGVGPGDRVAVLLERS-AELV-VAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRL 86 (408)
T ss_pred hCCCCCCEEEEEeCCC-HHHH-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhc
Confidence 35566 7777777744 3333 55788899999998775 56889999999999999998887655544
No 141
>PLN03102 acyl-activating enzyme; Provisional
Probab=62.56 E-value=65 Score=25.71 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=47.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
|+.. |++...+| +..-.. ..+++.+..|+.++..+ ..+++.+...+++.++..++..+....
T Consensus 60 Gl~~gd~Vai~~~-n~~e~~-~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 123 (579)
T PLN03102 60 NITKNDVVSVLAP-NTPAMY-EMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEP 123 (579)
T ss_pred CCCCCCEEEEEcC-CcHHHH-HHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHH
Confidence 5666 77777777 444444 56789999999988775 678999999999999999988765543
No 142
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=61.50 E-value=66 Score=25.77 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=60.1
Q ss_pred cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH-----HHh--
Q 032003 7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA-----LAK-- 77 (149)
Q Consensus 7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~-----l~~-- 77 (149)
..+|+.+ ||+..+.| ++...+ ...+++-.+|..++..+ ..-.+.+.=.+++.++-.++.+|.+-.+ +.+
T Consensus 95 l~lGL~kGDrVgvwgp-N~~~w~-l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~ic 172 (596)
T KOG1177|consen 95 LSLGLKKGDRVGVWGP-NSYEWV-LCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEIC 172 (596)
T ss_pred HhhcCCCCCEEEEecC-ChHHHH-HHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhh
Confidence 4568888 99998888 777766 44568888888888775 3344555567899999999998865444 211
Q ss_pred ----C---CCCCcCCCCCceEEEEec
Q 032003 78 ----H---GLVKKFDLSSLKLVGSGA 96 (149)
Q Consensus 78 ----~---~~~~~~~l~~lr~~~~gg 96 (149)
+ +..+...++.++.+...+
T Consensus 173 PEv~~~~~G~lkS~~lp~lthvi~~~ 198 (596)
T KOG1177|consen 173 PEVMRGDPGQLKSELLPELTHVILAD 198 (596)
T ss_pred HHhhcCCCccccccccccceEEEecC
Confidence 1 112334567788877777
No 143
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=61.28 E-value=78 Score=24.82 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 138 GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~a 189 (478)
T cd07085 138 GVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEA 189 (478)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHh
Confidence 688889998886544 3556789999999988753 2 356667777664
No 144
>PRK08316 acyl-CoA synthetase; Validated
Probab=60.83 E-value=66 Score=24.89 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=47.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+..+ |++....|-.. -.+ ..+++.+..|+..+..+ ...++.+...+++.++..++........+
T Consensus 57 gi~~~~~V~l~~~~~~-~~~-~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~ 122 (523)
T PRK08316 57 GLKKGDRVAALGHNSD-AYA-LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTA 122 (523)
T ss_pred CCCCCCEEEEECCCCH-HHH-HHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHH
Confidence 5555 77776666443 334 45789999999988775 56889999999999999988877665554
No 145
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=59.69 E-value=79 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 98 GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~l~~a 149 (429)
T cd07100 98 GVVLGIMPWNFPFWQVFRFAAPNLMAGNTVLLKHASNVPGCALAIEELFREA 149 (429)
T ss_pred eEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 788889999886532 2466789999999998653 2 345667777664
No 146
>PLN02736 long-chain acyl-CoA synthetase
Probab=59.60 E-value=91 Score=25.35 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=50.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 77 (149)
.|..+ |++...++- ..-.+ ...++.+..|+.++.. +..+++.+...+++.++..++..+..+..+..
T Consensus 98 ~Gv~~gd~Vai~~~n-~~e~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~ 166 (651)
T PLN02736 98 HGIPKGACVGLYFIN-RPEWL-IVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLS 166 (651)
T ss_pred hCCCCCCEEEEEcCC-CHHHH-HHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHH
Confidence 46666 777766663 33333 4567888899998866 46789999999999999999998887766543
No 147
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=59.00 E-value=83 Score=24.65 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=49.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
++.. |++....+ +..-.+ ..+++.+..|+..+..+ ...++.+.+.+++.++..++..+.....+.
T Consensus 57 g~~~g~~V~i~~~-~~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 123 (546)
T PRK08314 57 GVRKGDRVLLYMQ-NSPQFV-IAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVA 123 (546)
T ss_pred CCCCCCEEEEECC-CChHHH-HHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHH
Confidence 5666 77766666 444444 56789999999999775 568899999999999999888776655543
No 148
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=58.78 E-value=87 Score=24.57 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=41.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEecHHHHHHHHhC
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVPPLILALAKH 78 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~ 78 (149)
.++....|+++-..+. +.+..+|..|.++++-+. . ....+.+.+++.+ ++++.........+.++
T Consensus 138 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~v~g~~~~~~~L~~~ 212 (477)
T TIGR01722 138 GVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEAVDRLLEH 212 (477)
T ss_pred ceEEEEccCChHHHHHHHHHHHHHhcCCEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEEEeCCHHHHHHHHcC
Confidence 7888999988866443 445688999999988652 2 3556667776653 33343333444555544
No 149
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=57.76 E-value=1.2e+02 Score=27.52 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=37.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-CC---HHHHHHHHHhc--CceEEEecH
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVVP 69 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~~--~~t~~~~~P 69 (149)
.++.+..|+++-..+ ...+..+|..|.++++=|. .. ...+.+++++- ....+..+|
T Consensus 770 GVV~~IsPWNFPlai~~g~iaaALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~ 832 (1318)
T PRK11809 770 GPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLP 832 (1318)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEee
Confidence 899999999985544 3456688999999988652 23 45556666653 334444443
No 150
>PRK07514 malonyl-CoA synthase; Validated
Probab=56.84 E-value=89 Score=24.09 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=47.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|..+ |++....+-. .-.. ..+++.+..|+..+..+ ...++.+...+++.++..++..+.....+
T Consensus 49 g~~~gd~v~i~~~~~-~e~~-v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 114 (504)
T PRK07514 49 GVKPGDRVAVQVEKS-PEAL-ALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWL 114 (504)
T ss_pred CCCCCCEEEEECCCC-HHHH-HHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHH
Confidence 5555 7777676633 3333 56789999999998775 56889999999999999988877665443
No 151
>PRK13383 acyl-CoA synthetase; Provisional
Probab=56.79 E-value=93 Score=24.26 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=47.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+..+ |++...++ .....+ ..+++.+..|+..+..+ ...++.+...+++.++..++..+.....+
T Consensus 81 gi~~g~~V~i~~~-~~~~~~-~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 146 (516)
T PRK13383 81 GVAPGRAVGVMCR-NGRGFV-TAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERI 146 (516)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHH
Confidence 5666 77766665 333333 55678899999999875 56889999999999999999877765544
No 152
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=56.33 E-value=36 Score=27.84 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=27.7
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEE-eeecccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QVVQFEHLY 126 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~ 126 (149)
.+.+++|.+-...-...-...++..+|+.++. .+|++||+-
T Consensus 303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~ 344 (612)
T PLN02620 303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECY 344 (612)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceE
Confidence 35677766644444556667777777777644 499999975
No 153
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=54.84 E-value=1.3e+02 Score=25.22 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=63.5
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhcCCceEE-EcCCCCHHHHHHHHHhcCceEEEec-HHHHHHHHhCCCCCcCCC
Q 032003 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCII-LMAKFDLEMFLRAIEKHRVTHIWVV-PPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v-~~~~~~~~~~~~~l~~~~~t~~~~~-P~~~~~l~~~~~~~~~~l 86 (149)
.|.+++-.......+--=.+ ....++...|..++ +.+...++.....+.+-.+..++.- +..+..+++... ...+
T Consensus 128 lG~~~~~~VGIy~~N~pEWi-is~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~--~~~~ 204 (691)
T KOG1256|consen 128 LGVKEDSKVGIYAFNRPEWI-ISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKE--NDSL 204 (691)
T ss_pred hCCCCCceEEEeccCChhhH-HhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcc--cccC
Confidence 45555333444444444444 44456666666665 5688999999999999999999887 999999987532 2246
Q ss_pred CCceEEEEecCCCCHHHHHHH
Q 032003 87 SSLKLVGSGAAPLGKELMEEC 107 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~ 107 (149)
++||.+..-.++ +.++.++.
T Consensus 205 ~~LK~iI~~~~~-~~~~~~~~ 224 (691)
T KOG1256|consen 205 PSLKAIIQLDEP-SDELKEKA 224 (691)
T ss_pred ccceeEEEecCC-chhhhhhh
Confidence 788888877766 44444443
No 154
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=53.77 E-value=81 Score=25.72 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=46.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|... |++...+|-.--. + ..+++....|+..+.. +.+.++.+...+++.++..++...
T Consensus 112 ~Gv~~GDrV~i~~~n~~e~-~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 112 LNISKNDNVLIYMANTLEP-L-IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred cCCCCCCEEEEECCCCHHH-H-HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcc
Confidence 46777 8888888844333 3 4678999999998876 478999999999999999988754
No 155
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=53.55 E-value=1.4e+02 Score=26.73 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=33.4
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++.+..|+++-..+ ...+..++..|.++++-|. . ....+.+.+++.
T Consensus 678 GVv~~IsPwNfPlai~~g~i~aALaaGN~VV~KPse~tpl~a~~l~~ll~eA 729 (1208)
T PRK11905 678 GPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEA 729 (1208)
T ss_pred cEEEEEcCCcCHHHHHHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHHc
Confidence 889999999884333 3566789999999988652 2 345556666664
No 156
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=53.16 E-value=1.1e+02 Score=23.86 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=34.3
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 119 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 170 (454)
T cd07109 119 GVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEA 170 (454)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 688899999887544 3466789999999998763 2 356667777764
No 157
>PLN02574 4-coumarate--CoA ligase-like
Probab=52.81 E-value=1.1e+02 Score=24.28 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=49.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
.|+.+ |++....+ ++.-.+ ..+++.+..|+..+..+ ...++.+...+++.++..++..+.....+.
T Consensus 87 ~G~~~gd~V~i~~~-n~~~~~-~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 154 (560)
T PLN02574 87 MGVRQGDVVLLLLP-NSVYFP-VIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLS 154 (560)
T ss_pred hCCCCCCEEEEECC-CcchHH-HHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 46666 88877776 444434 45689999999998775 567889999999999998888877665553
No 158
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.65 E-value=60 Score=20.86 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH----H--HHHHHHhCCCCCcCCCCCceEEEEe
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP----P--LILALAKHGLVKKFDLSSLKLVGSG 95 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P----~--~~~~l~~~~~~~~~~l~~lr~~~~g 95 (149)
.|+-|.......-=.+|-.++-.. ..+++.+.+..+++++..+.... + .+.++.+.- +...+... .++.|
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l--~~~gl~~~-~vivG 89 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKC--DEAGLEGI-LLYVG 89 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHH--HHCCCCCC-EEEec
Confidence 577777332222234566666553 56899999999999987765532 1 122222211 22234444 37778
Q ss_pred cCC-CCHHHHH----HHHHhCCCCcEEeeecccc
Q 032003 96 AAP-LGKELME----ECAKNVPSATVIQVVQFEH 124 (149)
Q Consensus 96 g~~-~~~~~~~----~~~~~~~~~~i~~~YG~tE 124 (149)
|.+ ++++-.+ ++++ .| +-..||+..
T Consensus 90 G~~vi~~~d~~~~~~~l~~-~G---v~~vF~pgt 119 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKE-MG---FDRVFAPGT 119 (134)
T ss_pred CCcCcChhhhHHHHHHHHH-cC---CCEEECcCC
Confidence 875 4544433 4544 33 445666553
No 159
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=52.36 E-value=14 Score=29.41 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=23.0
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCc-EEeeecccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSAT-VIQVVQFEHLY 126 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~-i~~~YG~tE~~ 126 (149)
.+.++.+.+-+..-...-.+++++.+|+.+ +..+|++||+-
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~ 307 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGF 307 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEE
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceE
Confidence 356775544333334455567777777644 55699999974
No 160
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=52.30 E-value=1.1e+02 Score=23.69 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+... |++...++-.... + ..+++.+..|+..+..+ ...++.+...+++.++..++..+.....+
T Consensus 46 g~~~~~~V~i~~~n~~~~-~-~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 111 (515)
T TIGR03098 46 GLARGERVAIYLDKRLET-V-TAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLL 111 (515)
T ss_pred CCCCCCEEEEEcCCCHHH-H-HHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhh
Confidence 4455 6777676644433 3 45688899999988775 57899999999999999988876655443
No 161
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=51.00 E-value=1.2e+02 Score=23.65 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=34.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR 61 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~ 61 (149)
.++....|+++-.... ..+..+|..|.++++-+. . ....+.+.+++.+
T Consensus 119 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aG 171 (448)
T TIGR01780 119 GVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAG 171 (448)
T ss_pred eEEEEEcCCChHHHHHHHHHHHHHHcCCeEeeECCccchHHHHHHHHHHHHcC
Confidence 7889999998876553 467789999999998763 2 3455666666653
No 162
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=50.79 E-value=1.2e+02 Score=23.77 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=34.5
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-.... +.+..+|..|.++++-+. .....+.+.+++.
T Consensus 137 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~a 188 (478)
T cd07131 137 GVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPACALKLVELFAEA 188 (478)
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHhc
Confidence 7899999998866543 356789999999998763 2456666777664
No 163
>PLN02654 acetate-CoA ligase
Probab=50.76 E-value=1e+02 Score=25.22 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=46.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|.++ |++...+|-.--. + ..+++++..|+..+..+ .+.++.+...+++.++..++....
T Consensus 140 ~Gv~~GdrV~i~~pn~~e~-v-~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~ 201 (666)
T PLN02654 140 VGVKKGDAVVIYLPMLMEL-P-IAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNA 201 (666)
T ss_pred cCCCCCCEEEEEcCCCHHH-H-HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCc
Confidence 46666 8888888744333 3 56789999999988774 788999999999999998887544
No 164
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=50.64 E-value=55 Score=19.84 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=48.1
Q ss_pred cchhhHHHHHHHHHhHhcC-CceEEEcC-CCCHHHHHHHHHhcCceEEEecH---HHHHHHHhCCCCCcCCCCCceEEEE
Q 032003 20 LPLFHVFGLAVITCGQLQK-GSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP---PLILALAKHGLVKKFDLSSLKLVGS 94 (149)
Q Consensus 20 ~p~~h~~g~~~~~~~~l~~-G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P---~~~~~l~~~~~~~~~~l~~lr~~~~ 94 (149)
..-.|..|+ ..+...+.. |-.+.+.+ ..+.+.+.+.++++++..+...- ..+....+..+..+...+.. .+..
T Consensus 9 ~~~~~~lGl-~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~-~iv~ 86 (121)
T PF02310_consen 9 PGEVHPLGL-LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNI-PIVV 86 (121)
T ss_dssp TTSSTSHHH-HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTS-EEEE
T ss_pred CCcchhHHH-HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCC-EEEE
Confidence 334567777 445555555 88887775 45679999999999988776632 12222221111112223444 3556
Q ss_pred ecCCCCHHHHHHHHH
Q 032003 95 GAAPLGKELMEECAK 109 (149)
Q Consensus 95 gg~~~~~~~~~~~~~ 109 (149)
||...+..-.+.+++
T Consensus 87 GG~~~t~~~~~~l~~ 101 (121)
T PF02310_consen 87 GGPHATADPEEILRE 101 (121)
T ss_dssp EESSSGHHHHHHHHH
T ss_pred ECCchhcChHHHhcc
Confidence 666555554444443
No 165
>PLN02246 4-coumarate--CoA ligase
Probab=50.08 E-value=1.1e+02 Score=23.93 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=46.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.+..+ |++....+ +..-.+ ..+++.+..|+..+..+ ....+.+...+++.++..++........+
T Consensus 70 ~g~~~gd~V~i~~~-~~~~~~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 136 (537)
T PLN02246 70 LGIRQGDVVMLLLP-NCPEFV-LAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKL 136 (537)
T ss_pred hCCCCCCEEEEECC-CChHHH-HHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Confidence 35666 77766665 333333 55688899999998775 56789999999999999888766544433
No 166
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=49.69 E-value=1.2e+02 Score=23.30 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred cEEEEecchhhHH-HHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC
Q 032003 14 YVFLCVLPLFHVF-GLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR 61 (149)
Q Consensus 14 ~~~l~~~p~~h~~-g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~ 61 (149)
.+++...|.++.. ...+.+..++..|.++++-+. . .+..+.+.+++..
T Consensus 98 Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~~~l~~~l~~ag 150 (432)
T cd07078 98 GVVGAITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALLLAELLAEAG 150 (432)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 6888888988763 334677899999999988753 2 4567777777654
No 167
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=49.22 E-value=1.1e+02 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=45.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ .+.++.+...+++.++..++...
T Consensus 103 ~Gv~~Gd~V~i~~~n~-~e~v-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 103 LGVGRGDRVLIYMPMI-AEAV-FAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred cCCCCCCEEEEEcCCC-HHHH-HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECC
Confidence 46777 8888888743 4434 56789999999988774 67899999999999999888753
No 168
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=48.93 E-value=1.3e+02 Score=23.76 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|... |++....|-.-- .+ ..+++.+..|+..+..+ ...++.+.+.+++.++..++........+
T Consensus 78 gi~~gd~V~l~~~n~~~-~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 143 (573)
T PRK05605 78 GVRPGDRVAIVLPNCPQ-HI-VAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTV 143 (573)
T ss_pred CCCCCCEEEEECCCCHH-HH-HHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHH
Confidence 4555 777777664333 23 56789999999998774 67899999999999999998877655444
No 169
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=48.44 E-value=1.3e+02 Score=23.66 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 77 (149)
+..+ +++....|-.... + ..+++.+..|+..+..+ ...++.+...+++.+++.++..+.....+.+
T Consensus 67 gi~~g~~V~v~~~n~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~ 134 (542)
T PRK06155 67 GVKRGDRVALMCGNRIEF-L-DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEA 134 (542)
T ss_pred CCCCCCEEEEECCCChHH-H-HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHH
Confidence 5555 6776666644443 3 56789999999998775 6789999999999999999998877666543
No 170
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=47.95 E-value=1.1e+02 Score=24.95 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=46.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-. .-.+ ..+++++..|+..+..+ .+.++.+...+++.++..++...
T Consensus 134 ~Gv~~GdrV~i~~~n~-~e~~-~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~ 194 (652)
T TIGR01217 134 LGVRPGDRVSGYLPNI-PQAV-VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVD 194 (652)
T ss_pred cCCCCCCEEEEEcCCC-HHHH-HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence 46667 8888888854 4434 46689999999888774 67899999999999998888754
No 171
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=47.61 E-value=1.3e+02 Score=23.63 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=46.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
.+..+ |++...+|-. .-.+ ..+++.+..|+..+..+ ...++.+...+++.+++.++.......
T Consensus 71 ~g~~~g~~V~i~~~~~-~~~~-~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~ 135 (560)
T PRK08751 71 LQLKKGDRVALMMPNC-LQYP-IATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGT 135 (560)
T ss_pred hCCCCCCEEEEECCCC-HHHH-HHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHH
Confidence 45666 7777666633 3333 56789999999999764 667899999999999998887665543
No 172
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=47.26 E-value=1e+02 Score=21.86 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHhHhc--CCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC----CCCcCCCCCceEEE
Q 032003 21 PLFHVFGLAVITCGQLQ--KGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFDLSSLKLVG 93 (149)
Q Consensus 21 p~~h~~g~~~~~~~~l~--~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~l~~lr~~~ 93 (149)
.=-|.-|- . +..++. +|-.++=. ....++.+.+..+++++..+..+..+=..+.... ..+...++.--.++
T Consensus 114 GDvHdIGk-~-iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~ 191 (227)
T COG5012 114 GDVHDIGK-N-IVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVM 191 (227)
T ss_pred ccHHHHHH-H-HHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEe
Confidence 33677776 2 334443 34444322 3456899999999999988877554333222110 01122233222567
Q ss_pred EecCCCCHHHHHHH
Q 032003 94 SGAAPLGKELMEEC 107 (149)
Q Consensus 94 ~gg~~~~~~~~~~~ 107 (149)
.||+|++++..++.
T Consensus 192 vGGApvtq~~a~~i 205 (227)
T COG5012 192 VGGAPVTQDWADKI 205 (227)
T ss_pred ecCccccHHHHHHh
Confidence 79999999876654
No 173
>PRK09274 peptide synthase; Provisional
Probab=47.19 E-value=1.2e+02 Score=23.88 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
|..+ |++...++-.... + ..+++.+..|+..+..+ ....+.+...+++.++..++..+
T Consensus 62 g~~~gd~V~~~~~n~~~~-~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 62 GIGRGMRAVLMVTPSLEF-F-ALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred CCCCCCEEEEEeCCcHHH-H-HHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEecc
Confidence 5666 8888777744333 3 45689999999988775 56788999999999998887754
No 174
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=47.06 E-value=59 Score=26.63 Aligned_cols=45 Identities=4% Similarity=-0.078 Sum_probs=30.0
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEe-eecccccc-ccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQ-VVQFEHLY-YESCN 131 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~-~YG~tE~~-~~~~~ 131 (149)
+.+++|.+-...-...-..+++..+|+.++.. +||+||+- ++-..
T Consensus 293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~ 339 (606)
T PLN02247 293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLK 339 (606)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccC
Confidence 56777666444445666677877778777555 99999975 34343
No 175
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=47.04 E-value=1.1e+02 Score=23.94 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=43.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~ 68 (149)
.|..+ |++...+| ++.-.+ ..+++++..|+.++..+ ..+.+.+...+++.++..++..
T Consensus 69 ~G~~~gd~V~i~~~-n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~ 128 (547)
T PRK06087 69 KGIEPGDRVAFQLP-GWCEFT-IIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAP 128 (547)
T ss_pred cCCCCCCEEEEECC-CCHHHH-HHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEe
Confidence 35666 77777776 444444 56789999999988775 5678999999999999887764
No 176
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=46.69 E-value=1.4e+02 Score=23.22 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-.. ....+..+|..|.++++-+. . ....+.+.+++.
T Consensus 118 GVv~~i~p~N~P~~~~~~~l~~ALaaGN~VVlKps~~~~~~~~~l~~~l~~a 169 (452)
T cd07102 118 GVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEA 169 (452)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHhc
Confidence 68888999887642 23567899999999988753 2 345566666664
No 177
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=46.52 E-value=1.7e+02 Score=24.13 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=33.3
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. . ....+.+++++.
T Consensus 251 GVV~~I~PwNfPl~l~~~~iapALaAGNtVVlKPSe~tp~ta~~l~~l~~eA 302 (604)
T PLN02419 251 GVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEA 302 (604)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHh
Confidence 8999999998866653 345578999999998652 2 244556666654
No 178
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=46.21 E-value=1.4e+02 Score=23.12 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=47.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+..+ |++....+-. .-.+ ..+++.+..|+..+..+ ....+.+...+++.++..++..+.....+
T Consensus 32 g~~~~~~V~i~~~~~-~~~~-~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 97 (502)
T PRK08276 32 GLREGDVVAILLENN-PEFF-EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTA 97 (502)
T ss_pred CCCCCCEEEEEeCCC-HHHH-HHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEccchhhHH
Confidence 5555 7777777644 4444 45789999999998775 56789999999999999888877655444
No 179
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=46.07 E-value=1.5e+02 Score=23.54 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=48.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.+..+ |++....+ ++.-.+ ..+++.+..|+..+..+ ...++.+...++..++..++..+.....+
T Consensus 59 ~g~~~gd~V~~~~~-n~~e~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 125 (576)
T PRK05620 59 LGITGDQRVGSMMY-NCAEHL-EVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQL 125 (576)
T ss_pred cCCCCCCEEEEEeC-CCHHHH-HHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHH
Confidence 35656 76666665 444434 45688899999888775 56889999999999999999877665554
No 180
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=45.90 E-value=1.6e+02 Score=26.43 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH---HHHHHHHhCCCC-CcCCCCCceEEEEecC
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP---PLILALAKHGLV-KKFDLSSLKLVGSGAA 97 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P---~~~~~l~~~~~~-~~~~l~~lr~~~~gg~ 97 (149)
-|.-|....-..--.+|-.++-.- ...++.+.+.++++++..+.+.- +.+..+.+..+. +...+ .+ .++.||+
T Consensus 744 vHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~-~v-~v~vGGa 821 (1178)
T TIGR02082 744 VHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGI-TI-PLLIGGA 821 (1178)
T ss_pred ccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCC-Cc-eEEEecc
Confidence 677777554444456677777653 56899999999999999877643 223333221111 11122 23 4778999
Q ss_pred CCCHHHHHH
Q 032003 98 PLGKELMEE 106 (149)
Q Consensus 98 ~~~~~~~~~ 106 (149)
+++++..+.
T Consensus 822 ~~s~~~~~~ 830 (1178)
T TIGR02082 822 ATSKTHTAV 830 (1178)
T ss_pred ccchhHHHh
Confidence 998877653
No 181
>PLN03052 acetate--CoA ligase; Provisional
Probab=45.78 E-value=1.4e+02 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=47.4
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+| +..-.+ ..+++.+..|+..+.. +.+.++.+...+++.++..++....
T Consensus 228 ~Gv~~GdrVai~~p-n~~e~v-ia~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~ 289 (728)
T PLN03052 228 LGFEKGDAIAIDMP-MNVHAV-IIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDV 289 (728)
T ss_pred cCCCCCCEEEEEeC-CCHHHH-HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCc
Confidence 46666 88888888 444444 5678999999998877 4788999999999999999887654
No 182
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=45.77 E-value=1.2e+02 Score=23.99 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=48.4
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...++-... .. ..+++.+..|+.++..+ ...++.+...+++.++..++..+..+...
T Consensus 93 ~gv~~gd~V~i~~~n~~~-~~-~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 159 (570)
T PRK04319 93 LGVEKGDRVFIFMPRIPE-LY-FALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERK 159 (570)
T ss_pred hCCCCCCEEEEECCCCHH-HH-HHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhcc
Confidence 35556 777777764333 33 56789999999988664 67899999999999999998887765443
No 183
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=45.66 E-value=1.5e+02 Score=23.47 Aligned_cols=47 Identities=6% Similarity=-0.016 Sum_probs=34.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 156 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~ea 207 (500)
T cd07083 156 GAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEA 207 (500)
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHcCCeEEEeCCCcchHHHHHHHHHHHHc
Confidence 789999999997554 3566789999999998753 2 345666666654
No 184
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=45.62 E-value=1.7e+02 Score=26.46 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH---HHHHHHHhCCCC-CcCCCCCceEEEEecC
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP---PLILALAKHGLV-KKFDLSSLKLVGSGAA 97 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P---~~~~~l~~~~~~-~~~~l~~lr~~~~gg~ 97 (149)
-|.-|....-..--.+|-.++-.- ...++.+.+.++++++..+.+.- +.+..+.+..+. +...+ .+ .++.||+
T Consensus 763 vHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~-~v-~v~vGGa 840 (1229)
T PRK09490 763 VHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGF-TI-PLLIGGA 840 (1229)
T ss_pred cchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCC-CC-eEEEEee
Confidence 688887454444446777777663 67899999999999998877642 333333221111 11122 34 3778999
Q ss_pred CCCHHH
Q 032003 98 PLGKEL 103 (149)
Q Consensus 98 ~~~~~~ 103 (149)
++++..
T Consensus 841 ~~s~~~ 846 (1229)
T PRK09490 841 TTSKAH 846 (1229)
T ss_pred ccchhh
Confidence 988644
No 185
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=45.62 E-value=1.5e+02 Score=23.52 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=34.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. .....+.+.+++.
T Consensus 168 GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~a 219 (512)
T cd07124 168 GVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAKLVEILEEA 219 (512)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHh
Confidence 789999999885543 3567799999999998753 2355666666653
No 186
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=45.54 E-value=1.2e+02 Score=24.40 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ .+.++.+...+++.++..++....
T Consensus 108 ~Gv~~gd~V~i~~~n~-~e~~-~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 108 LGVKKGDRVAIYMPMI-PEAA-IAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred cCCCCCCEEEEECCCC-HHHH-HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 46666 8888888744 4334 56789999999988764 678999999999999998887653
No 187
>PRK08162 acyl-CoA synthetase; Validated
Probab=45.40 E-value=1.4e+02 Score=23.33 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+... |++....|-.... + ..+++.+..|+..+..+ ....+.+...+++.+++.++..+.....+
T Consensus 64 g~~~g~~v~i~~~~~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 129 (545)
T PRK08162 64 GIGRGDTVAVLLPNIPAM-V-EAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVA 129 (545)
T ss_pred CCCCCCEEEEECCCchHH-H-HHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHH
Confidence 4555 7777777644433 3 46788899998888775 67889999999999999999887765544
No 188
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=45.19 E-value=1.4e+02 Score=23.06 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++.... .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 119 Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~l~~a 170 (451)
T cd07103 119 GVVAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEA 170 (451)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCcHHHHHHHHHHHHc
Confidence 678888898876543 3567899999999998753 2 346677777764
No 189
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=44.78 E-value=1.5e+02 Score=23.30 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
++.+ |++...++ ++.-.. ..+++.+..|+..+..+ ...++.+...+++.++..++.......
T Consensus 69 gi~~gd~V~i~~~-n~~~~~-~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 132 (557)
T PRK07059 69 GLAKGARVAIMMP-NVLQYP-VAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFAT 132 (557)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHH
Confidence 5555 77776666 444444 45689999999999775 567899999999999999887665543
No 190
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=44.72 E-value=1.4e+02 Score=22.95 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
+... |++....|-. .-.+ ..+++.+..|+..+..+ ....+.+.+.+++.++..++..+.....
T Consensus 51 gv~~g~~V~l~~~~~-~~~~-~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 115 (513)
T PRK07656 51 GIGKGDRVAIWAPNS-PHWV-IAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGV 115 (513)
T ss_pred CCCCCCEEEEECCCC-hHHH-HHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHH
Confidence 4555 7777776643 3333 45678899999998775 5678999999999999999887765543
No 191
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=44.49 E-value=1.4e+02 Score=24.18 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=45.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ .+.++.+...+++.++..++....
T Consensus 134 ~Gv~~gd~V~i~~~n~-~e~v-~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (655)
T PRK03584 134 LGVGPGDRVAAYLPNI-PETV-VAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDG 195 (655)
T ss_pred cCCCCCCEEEEEcCCC-HHHH-HHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccc
Confidence 35666 8888888744 3333 56789999999988774 678999999999999988887543
No 192
>PLN02278 succinic semialdehyde dehydrogenase
Probab=44.28 E-value=1.6e+02 Score=23.35 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=32.6
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-CC---HHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~ 59 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. .. ...+.+.+++
T Consensus 162 GvV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~l~e 212 (498)
T PLN02278 162 GVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQ 212 (498)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHH
Confidence 7899999999865542 467788999999998753 22 3445555555
No 193
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=44.15 E-value=1.5e+02 Score=23.07 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=43.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcC-CC---CHHHHHHHHHh----cC-ceEEEe-cHHHHHHHHhCCCCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMA-KF---DLEMFLRAIEK----HR-VTHIWV-VPPLILALAKHGLVK 82 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~-~~---~~~~~~~~l~~----~~-~t~~~~-~P~~~~~l~~~~~~~ 82 (149)
.+++...|+++-... ...+..+|..|.++++-+ .. ....+.+++++ .+ ++++.. -......+..++
T Consensus 128 GVv~~i~p~n~P~~~~~~~~~~ALaaGN~VVlkps~~~~~~~~~l~~~~~~AglP~gvv~vv~g~~~~~~~~l~~~~--- 204 (462)
T PF00171_consen 128 GVVLIITPWNFPLYLAVWKIAPALAAGNTVVLKPSEQAPLTALLLAELLEEAGLPPGVVNVVPGDGSEVGEALVSHP--- 204 (462)
T ss_dssp SEEEEEE-SSSCTHHHHHHHHHHHHTT-EEEEEEBTTSHHHHHHHHHHHHHHTSTTTSEEEECSSTHHHHHHHHHTT---
T ss_pred cceeecccccccccccccchhhhhcccccceeeeccccccccccchhhccccccccccccccccccccccceeeecc---
Confidence 677888887765444 345678999999999854 33 34666666665 11 334444 334555565543
Q ss_pred cCCCCCceEEEEec
Q 032003 83 KFDLSSLKLVGSGA 96 (149)
Q Consensus 83 ~~~l~~lr~~~~gg 96 (149)
.++.+...|
T Consensus 205 -----~v~~v~ftG 213 (462)
T PF00171_consen 205 -----DVDLVSFTG 213 (462)
T ss_dssp -----TEEEEEEES
T ss_pred -----ccceeeecc
Confidence 255565555
No 194
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=44.13 E-value=1.5e+02 Score=22.89 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=48.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+++. +++....|-.... + ..+++.+..|+..+..+ ...++.+...+++.++..++........+
T Consensus 52 g~~~~~~V~l~~~~~~~~-~-~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 117 (521)
T PRK06187 52 GVKKGDRVAVFDWNSHEY-L-EAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLL 117 (521)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHH
Confidence 4555 7777777754433 3 46689999999988876 56789999999999999888877665544
No 195
>PRK05852 acyl-CoA synthetase; Validated
Probab=44.12 E-value=1.4e+02 Score=23.43 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=42.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~ 67 (149)
|..+ |++...+| ++.-.. ..+++.+..|+..+..+ ..+++.+...+++.++..++.
T Consensus 64 gv~~gd~V~i~~~-n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 121 (534)
T PRK05852 64 GLLPGDRVALRMG-SNAEFV-VALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI 121 (534)
T ss_pred CCCCCCEEEEECC-CcHHHH-HHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEE
Confidence 5556 77766666 445444 56789999999999775 567889999999999988874
No 196
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=44.05 E-value=1.6e+02 Score=23.20 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-... .+.+..+|..|.++++-+. .....+.+++++.
T Consensus 147 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~l~~a 198 (481)
T cd07141 147 GVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEA 198 (481)
T ss_pred eEEEEEccChhHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 688999999886655 3566789999999998753 2345566666653
No 197
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=43.73 E-value=1.5e+02 Score=23.98 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=44.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-.- -.+ ..+++.+..|+..+..+ ...++.+...+++.++..++...
T Consensus 118 ~Gv~~gd~V~i~~~n~~-e~~-~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~ 178 (637)
T PRK00174 118 LGVKKGDRVAIYMPMIP-EAA-VAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITAD 178 (637)
T ss_pred cCCCCCCEEEEEcCCCH-HHH-HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcC
Confidence 35666 88877777433 333 45689999999998775 67899999999999999888754
No 198
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=43.45 E-value=1.6e+02 Score=22.97 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=34.3
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-.... +.+..+|..|.++++-+. . ....+.+++++.
T Consensus 122 GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~a 173 (456)
T cd07110 122 GVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEA 173 (456)
T ss_pred eeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECcccchHHHHHHHHHHHHc
Confidence 7899999998876543 356789999999998753 2 345666666665
No 199
>PRK05857 acyl-CoA synthetase; Validated
Probab=43.06 E-value=1.4e+02 Score=23.57 Aligned_cols=61 Identities=8% Similarity=-0.024 Sum_probs=45.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~ 71 (149)
.+..+ |++...++-.... + ..+++.+..|+..+..+ ...++.+.+.++..++..++..+..
T Consensus 61 ~g~~~g~~V~i~~~~~~e~-~-~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 61 QSVSRGSRVLVISDNGPET-Y-LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred hCcCCCCEEEEEcCCCHHH-H-HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccc
Confidence 35555 7777777644444 3 45689999999999876 5688999999999998888876653
No 200
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=42.94 E-value=1.4e+02 Score=22.30 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR 61 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~ 61 (149)
.+++...|.++... ..+.+..++..|.++++-+. . .+..+.+.+++..
T Consensus 94 Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~~~l~~~l~~ag 146 (367)
T cd06534 94 GVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALALAELLQEAG 146 (367)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHhcC
Confidence 68888999888754 44777899999999988753 2 3566667776654
No 201
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=42.71 E-value=1.7e+02 Score=23.17 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=46.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
|... |++...+| +..-.. ..+++.+..|+..+..+ ....+.+...+++.++..++.......
T Consensus 71 gi~~gd~Vai~~~-n~~~~~-~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 134 (562)
T PRK05677 71 DLKPGDRIAVQLP-NVLQYP-VAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAH 134 (562)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhh
Confidence 5566 77777766 344434 45789999999998775 568899999999999998887655433
No 202
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=42.63 E-value=2.1e+02 Score=24.15 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~ 92 (149)
|++...++ +..-.+ ...++++..|+..+.. +.+.++.+...+++-++..++..+..+..+.... .+++.++.+
T Consensus 131 d~V~i~~~-N~~ew~-~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~----~~~~~l~~i 204 (746)
T PTZ00342 131 KLLGLYGS-NSINWL-VADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERK----NELPHLKKL 204 (746)
T ss_pred cEEEEEcC-CCHHHH-HHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhh----ccCCCceEE
Confidence 45555554 444444 5567889999988866 5789999999999999999998877777765431 124556655
Q ss_pred EEec
Q 032003 93 GSGA 96 (149)
Q Consensus 93 ~~gg 96 (149)
..-+
T Consensus 205 i~~~ 208 (746)
T PTZ00342 205 IILD 208 (746)
T ss_pred EEEC
Confidence 5443
No 203
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=42.60 E-value=1.6e+02 Score=22.93 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=34.8
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+. .....+.+.+++.
T Consensus 121 GvV~~I~p~N~P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~~~~~l~~~~~~a 172 (454)
T cd07118 121 GVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEA 172 (454)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHhc
Confidence 789999999887654 3566789999999998652 2356667777764
No 204
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=42.16 E-value=1.5e+02 Score=22.33 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=44.2
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
|... |++....|-. ...+ ..+++.+..|+..+..+ ....+.+...+++.++..++..+.
T Consensus 20 g~~~gd~v~i~~~~~-~~~~-~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 20 GIRSGSRVALVGQNS-IEMV-LLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CCCCCCEEEEEcCCC-HHHH-HHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 5555 7777777644 3333 56789999999998876 567889999999999988876543
No 205
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=42.09 E-value=1.5e+02 Score=23.44 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=45.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+|-.--. + ..+++.+..|+.++..+ ...++.+...+++.++..++..+.
T Consensus 52 ~Gv~~gd~V~v~~~n~~~~-~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~ 113 (563)
T PLN02860 52 LGLRNGDVVAIAALNSDLY-L-EWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDET 113 (563)
T ss_pred hCCCCCCEEEEEcCCCHHH-H-HHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecc
Confidence 35666 8887777643333 3 45678899999998775 578999999999999998887553
No 206
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=42.04 E-value=51 Score=29.11 Aligned_cols=92 Identities=25% Similarity=0.117 Sum_probs=67.1
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHh----CCC------
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAK----HGL------ 80 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~----~~~------ 80 (149)
++++......-..|+.++++.++..|.+-+-.|+ ..|..+.+.+.+++.++...--.-+.+... .+.
T Consensus 311 ~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~ 390 (1363)
T KOG3628|consen 311 DVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFK 390 (1363)
T ss_pred cceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchh
Confidence 6777777777778888889999999999998886 578889999999999877653222222211 111
Q ss_pred -CCcCCCCCceEEEEecCCCCHHHHH
Q 032003 81 -VKKFDLSSLKLVGSGAAPLGKELME 105 (149)
Q Consensus 81 -~~~~~l~~lr~~~~gg~~~~~~~~~ 105 (149)
...-+++++|.++.....+..+..+
T Consensus 391 k~~t~d~sslk~C~Vtc~~vd~~~~~ 416 (1363)
T KOG3628|consen 391 KYKTPDLSSLKGCMVTCTAVDTEFQE 416 (1363)
T ss_pred hccCCCccceeeeEEeeeecchHHHH
Confidence 1124678999999999998877544
No 207
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=41.95 E-value=43 Score=16.24 Aligned_cols=24 Identities=4% Similarity=0.032 Sum_probs=17.2
Q ss_pred HhcCCceEEEcCCCCHHHHHHHHH
Q 032003 35 QLQKGSCIILMAKFDLEMFLRAIE 58 (149)
Q Consensus 35 ~l~~G~~~v~~~~~~~~~~~~~l~ 58 (149)
++..++.+++.+...+++.-+.|.
T Consensus 9 TIfY~G~V~Vfd~v~~~Ka~~im~ 32 (36)
T PF06200_consen 9 TIFYGGQVCVFDDVPPDKAQEIML 32 (36)
T ss_pred EEEECCEEEEeCCCCHHHHHHHHH
Confidence 356678888888888777766553
No 208
>PRK06839 acyl-CoA synthetase; Validated
Probab=41.87 E-value=1.6e+02 Score=22.63 Aligned_cols=65 Identities=5% Similarity=-0.054 Sum_probs=48.4
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|.++ +++...++-... .+ ..+++.+..|...+..+ ..+++.+...+++.++..++..+.....+
T Consensus 48 ~g~~~~~~V~i~~~~~~~-~~-~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 114 (496)
T PRK06839 48 LNVKKGERIAILSQNSLE-YI-VLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMA 114 (496)
T ss_pred cCCCCCCEEEEECCCCHH-HH-HHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHH
Confidence 35666 777766664433 33 56789999999998775 56889999999999999998887765444
No 209
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=41.00 E-value=1.7e+02 Score=22.71 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=33.0
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. ..+..+|..|.++++-+. . ....+.+.+++.
T Consensus 125 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~l~~a 176 (452)
T cd07147 125 GPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAET 176 (452)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHc
Confidence 7788888888865432 346788999999988753 2 355667777664
No 210
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.31 E-value=90 Score=19.33 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH---H---HHHHHhCCCCCcCCCCCceEEEEe
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP---L---ILALAKHGLVKKFDLSSLKLVGSG 95 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~---~---~~~l~~~~~~~~~~l~~lr~~~~g 95 (149)
.|..|.......--..|-.++... ...++.+.+..++.++..+...-. . +..+.+.- +...+..++ ++.|
T Consensus 11 ~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L--~~~~~~~i~-i~~G 87 (122)
T cd02071 11 GHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELL--RELGAGDIL-VVGG 87 (122)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHH--HhcCCCCCE-EEEE
Confidence 677787443333334555555554 457899999999999988777422 1 12222211 112233443 5566
Q ss_pred cCCCCHHHHHHHHHh
Q 032003 96 AAPLGKELMEECAKN 110 (149)
Q Consensus 96 g~~~~~~~~~~~~~~ 110 (149)
|.. +++..+++.+.
T Consensus 88 G~~-~~~~~~~~~~~ 101 (122)
T cd02071 88 GII-PPEDYELLKEM 101 (122)
T ss_pred CCC-CHHHHHHHHHC
Confidence 654 45656666654
No 211
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=40.03 E-value=1.8e+02 Score=23.49 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=45.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-.--. + ..+++.+..|+..+..+ .+.++.+...+++.++..++...
T Consensus 104 ~Gv~~gd~V~i~~~n~~e~-~-~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 104 LGVQRGDRVLIYMPMIAEA-A-FAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred cCCCCCCEEEEECCCCHHH-H-HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence 36666 8888888744333 3 45688999999888764 67899999999999999888654
No 212
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=39.96 E-value=1.8e+02 Score=22.72 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-.. ....+..+|..|.++++-+. .....+.+.+++.
T Consensus 132 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~a 183 (466)
T cd07138 132 GVCGLITPWNWPLNQIVLKVAPALAAGCTVVLKPSEVAPLSAIILAEILDEA 183 (466)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHc
Confidence 78889999887633 33567789999999998653 2356666777665
No 213
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=39.85 E-value=1.9e+02 Score=22.85 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. .....+.+.+++.
T Consensus 144 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~t~~~l~~~~~~a 195 (488)
T PRK13252 144 GVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEA 195 (488)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHhcCCeEEEeCCccCcHHHHHHHHHHHHc
Confidence 7888889998865542 456788999999988652 2456666777664
No 214
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=39.48 E-value=2e+02 Score=23.14 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=33.3
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. . ....+.+++++.
T Consensus 197 GVV~~I~PwN~P~~l~~~~i~pALaaGN~VVlKPs~~tp~~~~~l~~ll~ea 248 (538)
T PLN02466 197 GVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEA 248 (538)
T ss_pred eEEEEECCCchHHHHHHHHHhHHHHcCCEEEeECCCCCcHHHHHHHHHHHhc
Confidence 788899999987654 3456689999999998752 2 345556666654
No 215
>PRK12583 acyl-CoA synthetase; Provisional
Probab=39.45 E-value=1.9e+02 Score=22.74 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=43.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
+..+ |++....|- ..-.. ..+++.+..|+..+..+ ...++.+...+++.++..++..+.
T Consensus 66 gi~~g~~V~i~~~~-~~~~~-~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~ 126 (558)
T PRK12583 66 GVQPGDRVGIWAPN-CAEWL-LTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADA 126 (558)
T ss_pred CCCCCCEEEEECCC-ChHHH-HHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 4555 666666653 33333 56789999999998775 678999999999999998887653
No 216
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=39.43 E-value=1.9e+02 Score=22.72 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 137 GVv~~I~P~N~Pl~~~~~~i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~a 188 (473)
T cd07097 137 GVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTPASAWALVEILEEA 188 (473)
T ss_pred eeEEEEcccChHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 6888899998876553 456789999999998753 2 355566666654
No 217
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=39.37 E-value=1.6e+02 Score=23.28 Aligned_cols=60 Identities=7% Similarity=0.052 Sum_probs=44.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~ 71 (149)
|..+ |++...++ ++.-.. ..+++.+..|+..+..+ ....+.+...+++.++..++..+.+
T Consensus 71 gi~~gd~V~i~~~-n~~e~~-~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~ 132 (562)
T PRK12492 71 DLVPGDRIAVQMP-NVLQYP-IAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMF 132 (562)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEecccc
Confidence 5566 77776665 444444 56789999999988775 5688999999999999888876543
No 218
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=39.12 E-value=2e+02 Score=22.94 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=34.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ .+.+..+|..|.++++-+. .....+.+.+++.
T Consensus 173 GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~a~~l~~~l~~a 224 (514)
T PRK03137 173 GVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEA 224 (514)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999885543 3567899999999998753 2345566666654
No 219
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=39.01 E-value=1.9e+02 Score=22.80 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|++...+|-..- .. ..+++.+..|+..+..+ ....+.+...+++.++..++.....+..+
T Consensus 68 d~Val~~~n~~e-~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 128 (539)
T PRK06334 68 QHIGIMMPASAG-AY-IAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHL 128 (539)
T ss_pred CeEEEEcCCchH-HH-HHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHH
Confidence 777777764333 33 45689999999988876 56789999999999999988877766554
No 220
>PLN02614 long-chain acyl-CoA synthetase
Probab=39.01 E-value=2.2e+02 Score=23.40 Aligned_cols=66 Identities=12% Similarity=-0.056 Sum_probs=49.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
.|..+ |++...++ +..-.+ ...++.+..|+..+..+ ...++.+...+++.++..++.....+..+.
T Consensus 99 ~Gv~~Gd~Vai~~~-n~~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 166 (666)
T PLN02614 99 VGVKDEAKCGIYGA-NSPEWI-ISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF 166 (666)
T ss_pred cCCCCCCEEEEEcC-CCHHHH-HHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 46666 77777766 333333 55688899999988774 678999999999999999998777665553
No 221
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=38.97 E-value=1.9e+02 Score=22.71 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 143 GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~a 194 (476)
T cd07142 143 GVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEA 194 (476)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcccHHHHHHHHHHHHc
Confidence 7899999998876542 456789999999998763 2 345566666664
No 222
>PF04915 DltD_N: DltD N-terminal region; InterPro: IPR006999 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the N-terminal region of DltD.; PDB: 3BMA_C.
Probab=38.21 E-value=23 Score=19.50 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=10.6
Q ss_pred CCCcEEeeecccccc
Q 032003 112 PSATVIQVVQFEHLY 126 (149)
Q Consensus 112 ~~~~i~~~YG~tE~~ 126 (149)
.+.+.+-.||+||-.
T Consensus 26 ~~~~yvPfyGSSEl~ 40 (62)
T PF04915_consen 26 KDPKYVPFYGSSELS 40 (62)
T ss_dssp SSS-EEEEE-SSTTT
T ss_pred cCCCeeeecCcHHHh
Confidence 446789999999976
No 223
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=38.17 E-value=2.1e+02 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~ 59 (149)
.++....|+++-.. ....+..+|..|.++++-+. . ....+.+.+++
T Consensus 169 GVV~~I~P~N~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~ 219 (511)
T TIGR01237 169 GVAVVISPWNFPMAIAVGMTVAPIVTGNCVVLKPAETSTVIAAKIVEILIE 219 (511)
T ss_pred eeEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 78899999988543 34677899999999998753 2 34556666655
No 224
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=38.14 E-value=2e+02 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=34.7
Q ss_pred CC-cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 12 LD-YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 12 ~~-~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+ .+++...|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 146 ~P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~a 200 (480)
T cd07111 146 KPVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEA 200 (480)
T ss_pred eecceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 44 788999999887654 2446689999999998763 2 345566666654
No 225
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=37.88 E-value=2e+02 Score=22.66 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|.+|.++++-+. . ....+.+.+++.
T Consensus 134 GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~t~~~l~~~~~~a 185 (484)
T TIGR03240 134 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAEETVKLWEKA 185 (484)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHh
Confidence 789999999976543 2466789999999998763 2 355666666654
No 226
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=37.83 E-value=1.9e+02 Score=22.39 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=32.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~ 59 (149)
.+++...|+++.... ...+..+|..|.++++-+. . ....+.+.+++
T Consensus 120 Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~~~~ 170 (450)
T cd07092 120 GVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAE 170 (450)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHh
Confidence 688889999886544 3556789999999998753 2 34556666655
No 227
>PF06871 TraH_2: TraH_2; InterPro: IPR010680 This family consists of several TraH proteins, which seem to be specific to Agrobacterium and Rhizobium species. This protein is thought to be involved in conjugal transfer but its function is unknown. This family does not appear to be related to IPR010927 from INTERPRO.
Probab=37.76 E-value=37 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=22.7
Q ss_pred hHhcCCceEEEcCC-CCHHHHHHHHHhcC
Q 032003 34 GQLQKGSCIILMAK-FDLEMFLRAIEKHR 61 (149)
Q Consensus 34 ~~l~~G~~~v~~~~-~~~~~~~~~l~~~~ 61 (149)
.+..+|++++++++ .+|+..+.++++|=
T Consensus 35 VTVrsG~R~vLVPkp~tpdeAm~liR~~~ 63 (206)
T PF06871_consen 35 VTVRSGGRLVLVPKPKTPDEAMALIRQYV 63 (206)
T ss_pred EEEEECCEEEEecCCCCHHHHHHHHHHhc
Confidence 34578999999986 48999999998763
No 228
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=37.76 E-value=2e+02 Score=22.49 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+.. ....+.+++++.
T Consensus 126 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 177 (455)
T cd07148 126 GVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEA 177 (455)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHHcCCEEEeeCCCcccHHHHHHHHHHHHc
Confidence 788889998886544 34567889999999986532 345556666653
No 229
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=37.63 E-value=1.9e+02 Score=22.40 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=46.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
|... |++....+-..-.- ..+++.+..|+.++..+ ...++.+...+++.++..++..+.....
T Consensus 58 g~~~~~~v~i~~~n~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 122 (517)
T PRK08008 58 GIRKGDKVALHLDNCPEFI--FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPM 122 (517)
T ss_pred CCCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHH
Confidence 5555 77766666443332 45678899999988774 6789999999999999999887765443
No 230
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=37.50 E-value=1.6e+02 Score=21.31 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCC-CCHHHHHHHHHh
Q 032003 32 TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-LGKELMEECAKN 110 (149)
Q Consensus 32 ~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~-~~~~~~~~~~~~ 110 (149)
-+..++..+.++++++.......+.+-..+...-..-..++..+++.... ...+..+.||.+ +..+..+.+++.
T Consensus 57 e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~-----~~~~vfllGgkp~V~~~a~~~l~~~ 131 (253)
T COG1922 57 EFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAE-----EGKRVFLLGGKPGVAEQAAAKLRAK 131 (253)
T ss_pred HHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCc-----cCceEEEecCCHHHHHHHHHHHHHH
Confidence 34566677777777765544444333322222222333444444443321 136677778766 455666778888
Q ss_pred CCCCcEE
Q 032003 111 VPSATVI 117 (149)
Q Consensus 111 ~~~~~i~ 117 (149)
+|+.++.
T Consensus 132 ~p~l~iv 138 (253)
T COG1922 132 YPGLKIV 138 (253)
T ss_pred CCCceEE
Confidence 8865543
No 231
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=37.28 E-value=2e+02 Score=22.45 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-... ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 135 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VVlKps~~~p~~~~~l~~~~~~a 186 (468)
T cd07088 135 GVVAGILPWNFPFFLIARKLAPALVTGNTIVIKPSEETPLNALEFAELVDEA 186 (468)
T ss_pred eeEEEEccCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 688889998887644 3467899999999998753 2 345666666664
No 232
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=37.25 E-value=2e+02 Score=22.71 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=43.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~ 71 (149)
+... |++....+- ..-.. ..+++.+..|+..+..+ ...++.+.+.+++.++..++..+..
T Consensus 70 g~~~g~~V~i~~~~-~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~ 131 (560)
T PRK08974 70 GLKKGDRVALMMPN-LLQYP-IALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNF 131 (560)
T ss_pred CCCCCCEEEEECCC-CHHHH-HHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccc
Confidence 5555 666666553 33333 45689999999999775 5688999999999999988876543
No 233
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=36.86 E-value=2.4e+02 Score=23.15 Aligned_cols=66 Identities=9% Similarity=-0.084 Sum_probs=49.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
.|..+ |++...++ +..-.+ ...++.+..|+..+..+ ...++.+...+++.++..++........+.
T Consensus 97 ~Gv~~gd~Vai~~~-n~~e~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 97 RGVNPGDRCGIYGS-NCPEWI-IAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred cCCCCCCEEEEEcC-CCHHHH-HHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 36666 77776666 333333 45688999999988764 678999999999999999988776655553
No 234
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=36.66 E-value=2.4e+02 Score=23.28 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=56.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.|..+ |++...++ +..-.+ ...++.+..|+..+.. +...++.+...+++.++..++.....+..+.+.. ..+
T Consensus 126 lG~~~gd~Vai~~~-n~~e~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~----~~~ 199 (696)
T PLN02387 126 LGHNKEERVAIFAD-TRAEWL-IALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS----SQL 199 (696)
T ss_pred hCCCCCCEEEEEcC-CCHHHH-HHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh----hcc
Confidence 35666 77666665 333333 4567888999998866 4678999999999999999999887777665432 123
Q ss_pred CCceEEEEec
Q 032003 87 SSLKLVGSGA 96 (149)
Q Consensus 87 ~~lr~~~~gg 96 (149)
++++.+..-+
T Consensus 200 ~~l~~ii~~~ 209 (696)
T PLN02387 200 ETVKRVIYMD 209 (696)
T ss_pred CCceEEEEEC
Confidence 4455555443
No 235
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=36.55 E-value=2e+02 Score=22.30 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=33.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 125 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VI~Kps~~~p~~~~~l~~~l~~a 176 (453)
T cd07094 125 GVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEA 176 (453)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 678888998886432 3567899999999998753 2 345566666653
No 236
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=35.85 E-value=2.2e+02 Score=22.48 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=34.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 146 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~a 197 (481)
T cd07143 146 GVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPLSALYMTKLIPEA 197 (481)
T ss_pred eeEEEECCCcChHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHhc
Confidence 788999999887655 3567789999999998763 2 345566666654
No 237
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=35.84 E-value=2.1e+02 Score=22.33 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-... ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 125 GVV~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~~~l~~~~~~a 176 (459)
T cd07089 125 GVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAET 176 (459)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 688899998886433 3566799999999998763 2 345666777664
No 238
>PRK06164 acyl-CoA synthetase; Validated
Probab=35.27 E-value=2e+02 Score=22.45 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=44.1
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
+... |++....+-.... + ..+++.+..|+..+..+ ..+.+.+...+++.+++.++..+.
T Consensus 56 g~~~g~~V~i~~~n~~~~-~-~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~ 116 (540)
T PRK06164 56 GVRRGDRVAVWLPNCIEW-V-VLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPG 116 (540)
T ss_pred CCCCCCEEEEEcCCcHHH-H-HHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccc
Confidence 5555 7777676644433 3 45688999999998875 567889999999999998887654
No 239
>PRK08315 AMP-binding domain protein; Validated
Probab=35.20 E-value=2.2e+02 Score=22.35 Aligned_cols=59 Identities=8% Similarity=0.033 Sum_probs=43.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
+..+ |++....|-. ...+ ..+++.+..|+..+..+ ....+.+.+.+++.+++.++....
T Consensus 64 gi~~g~~V~i~~~~~-~~~~-~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~ 124 (559)
T PRK08315 64 GIEKGDRVGIWAPNV-PEWV-LTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADG 124 (559)
T ss_pred CCCCCCEEEEECCCC-hHHH-HHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 4555 7766666533 3333 56789999999999775 567899999999999998877553
No 240
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=35.18 E-value=2.1e+02 Score=22.15 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|..+ |++....| ...-.+ ..+++.+..|+..+..+ ....+.+...+++.++..++........+
T Consensus 32 g~~~g~~V~v~~~-~~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 97 (509)
T PRK12406 32 GVRPGDCVALLMR-NDFAFF-EAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHADLLHGL 97 (509)
T ss_pred CCCCCCEEEEEcC-CCHHHH-HHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEccchhhhh
Confidence 4555 77776666 333333 56789999999998875 56789999999999999998876655544
No 241
>PRK13388 acyl-CoA synthetase; Provisional
Probab=35.08 E-value=2.3e+02 Score=22.39 Aligned_cols=64 Identities=8% Similarity=-0.099 Sum_probs=46.2
Q ss_pred CC-CC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GE-LD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~-~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|. .+ |++...++-..- .+ ..+++.+..|+.++..+ ....+.+...+++.++..++........+
T Consensus 47 g~~~~~~~V~i~~~n~~~-~v-~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 113 (540)
T PRK13388 47 ADPDRPLHVGVLLGNTPE-ML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLL 113 (540)
T ss_pred cCCCCCCEEEEECCCCcH-HH-HHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHH
Confidence 45 34 777777663333 33 45689999999999775 56788999999999999888876554433
No 242
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=35.03 E-value=1.3e+02 Score=21.33 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred HHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEe--------------cHHHHHHHHhCCCCCcCCCCCceEEEEe
Q 032003 32 TCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWV--------------VPPLILALAKHGLVKKFDLSSLKLVGSG 95 (149)
Q Consensus 32 ~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~--------------~P~~~~~l~~~~~~~~~~l~~lr~~~~g 95 (149)
+..++.-|-++-+.. +.+...+-+.++++.++..+- +|.-.+.++........+......+..|
T Consensus 102 v~~A~~vgrrfsViTtt~rs~~il~~lv~~~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLG 181 (230)
T COG4126 102 VLAALFVGRRFSVITTTERSRPILEELVRSYGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILG 181 (230)
T ss_pred HHHHHHhcceEEEEecCcccHHHHHHHHHhcCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEc
Confidence 345666676666553 345666777777776554332 2333333332211111122234567788
Q ss_pred cCCCCHHHHHHHHHhCCCCcEEeeec
Q 032003 96 AAPLGKELMEECAKNVPSATVIQVVQ 121 (149)
Q Consensus 96 g~~~~~~~~~~~~~~~~~~~i~~~YG 121 (149)
++.++. +.+++++.+| ++++.+-.
T Consensus 182 CAGms~-la~~Lq~~~g-vPVIDgv~ 205 (230)
T COG4126 182 CAGMSD-LADQLQKAFG-VPVIDGVA 205 (230)
T ss_pred CccHHH-HHHHHHHHhC-CCcccchH
Confidence 877654 4788999998 88876543
No 243
>PRK07529 AMP-binding domain protein; Validated
Probab=34.77 E-value=2e+02 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=40.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEec
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVV 68 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~ 68 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|. ++.. +..+++.+...+++.++..++..
T Consensus 78 ~Gi~~gd~V~i~~~n~-~e~~-~~~lA~~~~Gi-~~pi~~~~~~~~i~~~l~~~~~~~li~~ 136 (632)
T PRK07529 78 LGVGPGDVVAFLLPNL-PETH-FALWGGEAAGI-ANPINPLLEPEQIAELLRAAGAKVLVTL 136 (632)
T ss_pred cCCCCCCEEEEECCCC-HHHH-HHHHHHHHhCE-EEeCCCcCCHHHHHHHHHhcCCcEEEEe
Confidence 35666 8888777743 3333 45677777774 4433 46789999999999999988875
No 244
>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.71 E-value=63 Score=17.02 Aligned_cols=26 Identities=15% Similarity=0.071 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhCCCCcEEeeeccc
Q 032003 98 PLGKELMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~i~~~YG~t 123 (149)
.++++..+++.+.+........||=-
T Consensus 2 klS~esKerl~k~~~is~~vih~G~I 27 (53)
T KOG4449|consen 2 KLSEESKERLVKVFNISKFVIHYGWI 27 (53)
T ss_pred ccCHHHHHHHHHHeechheeeeechh
Confidence 37889999999998756677777754
No 245
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=34.64 E-value=2.4e+02 Score=22.48 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=33.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. ..+..+|..|.++++-+. . ....+.+++++.
T Consensus 160 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~a 211 (501)
T PLN02766 160 GVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLA 211 (501)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHhc
Confidence 7899999999876543 566788899999998653 2 335566666664
No 246
>PRK05850 acyl-CoA synthetase; Validated
Probab=34.63 E-value=2.3e+02 Score=22.46 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=45.6
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|++...++ ++.-.+ ..+++.+..|+.++..+. .+.+.+...+++.++..++..+.....+
T Consensus 60 d~V~l~~~-n~~~~~-~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~ 123 (578)
T PRK05850 60 DRAVILAP-QGLEYI-VAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDV 123 (578)
T ss_pred CEEEEEcC-CcccHH-HHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHH
Confidence 77777777 444444 567899999999998863 3578899999999999999887766554
No 247
>PLN02479 acetate-CoA ligase
Probab=34.34 E-value=2.4e+02 Score=22.42 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=46.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
|..+ |++....| +..-.+ ..+++.+..|+..+..+ ....+.+...+++.++..++..+..+.
T Consensus 66 g~~~gd~V~i~~~-n~~~~~-~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 129 (567)
T PLN02479 66 SIGPGSTVAVIAP-NIPAMY-EAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFT 129 (567)
T ss_pred CCCCCCEEEEECC-CcHHHH-HHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhh
Confidence 5666 77777666 334333 55688899999888775 568899999999999999998776543
No 248
>PRK07867 acyl-CoA synthetase; Validated
Probab=34.31 E-value=2.3e+02 Score=22.29 Aligned_cols=62 Identities=6% Similarity=-0.146 Sum_probs=45.7
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
..+ +++...+| +..-.. ..+++.+..|+.++..+ ...++.+...+++.++..++........
T Consensus 51 ~~~~~~V~i~~~-n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 114 (529)
T PRK07867 51 PTRPPHVGVLLD-NTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAEL 114 (529)
T ss_pred CCCCCEEEEECC-CCHHHH-HHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHH
Confidence 344 66655555 444444 56789999999999775 5688999999999999999988766543
No 249
>PRK09088 acyl-CoA synthetase; Validated
Probab=34.05 E-value=2.2e+02 Score=21.92 Aligned_cols=58 Identities=5% Similarity=0.010 Sum_probs=42.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
+... |++...++-.... + ..+++.+..|+..+..+ ...++.+...+++.+++.++...
T Consensus 43 g~~~~~~v~i~~~~~~~~-~-~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~ 102 (488)
T PRK09088 43 GCVDGERLAVLARNSVWL-V-ALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDD 102 (488)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcc
Confidence 4555 7777666644443 3 45688999999988775 56889999999999998887654
No 250
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=33.98 E-value=2.2e+02 Score=21.98 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-... ...+..++..|.++++-+. . ....+.+.+++.
T Consensus 100 GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~a 151 (432)
T cd07105 100 GVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEA 151 (432)
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHhcCCEEEEECCccChHHHHHHHHHHHHc
Confidence 788889999886553 2457799999999998753 2 345566666654
No 251
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=33.93 E-value=2.4e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=32.5
Q ss_pred cEEEEecchhhHH-HHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVF-GLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~-g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-. .....+..+|..|.++++-+. . ....+.+.+++.
T Consensus 169 GVV~~I~p~N~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~ll~ea 220 (518)
T cd07125 169 GVFVCISPWNFPLAIFTGQIAAALAAGNTVIAKPAEQTPLIAARAVELLHEA 220 (518)
T ss_pred cEEEEECCcchHHHHHHHHHHHHHHcCCEEEEeCCCcCcHHHHHHHHHHHHc
Confidence 7888899988733 334667789999999988653 2 235566666553
No 252
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=33.86 E-value=2.4e+02 Score=22.33 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=33.3
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-.. ..+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 149 GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~a 200 (486)
T cd07140 149 GVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKA 200 (486)
T ss_pred ceEEEEcCCchHHHHHHHHHHHHHHhCCEEEEECCccCcHHHHHHHHHHHHc
Confidence 78999999988764 33566788999999998652 2 345556666554
No 253
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=33.82 E-value=2.7e+02 Score=22.92 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=24.4
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCC-cEEeeecccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSA-TVIQVVQFEHLY 126 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~-~i~~~YG~tE~~ 126 (149)
+..+..||.. .-.+.++..+|+. .+...|++||+-
T Consensus 307 i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~ 342 (597)
T PLN02249 307 LDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESY 342 (597)
T ss_pred EEEEecCChH---HHHHHHHHHcCCCccccccccccceE
Confidence 6666667744 4556777777764 467899999965
No 254
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=33.66 E-value=2.4e+02 Score=22.21 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=32.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. ..+..+|..|.++++-+. . ....+.+.+++.
T Consensus 141 Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 192 (472)
T TIGR03250 141 GVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEA 192 (472)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 6788889998876332 456788999999998653 2 334556666664
No 255
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=33.54 E-value=2.4e+02 Score=22.22 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 146 GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~a 197 (484)
T cd07144 146 GVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTPLSLLYFANLVKEA 197 (484)
T ss_pred eEEEEECcCCCHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHh
Confidence 788899998886642 3566789999999988753 2 345566666654
No 256
>PRK07798 acyl-CoA synthetase; Validated
Probab=33.36 E-value=2.3e+02 Score=21.95 Aligned_cols=65 Identities=5% Similarity=-0.069 Sum_probs=46.6
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
|.+. |++...++ +..-.+ ..+++.+..|+..+..+ ....+.+...+++.++..++........+.
T Consensus 49 g~~~~~~v~v~~~-n~~~~~-~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 115 (533)
T PRK07798 49 GLGPGDHVGIYAR-NRIEYV-EAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115 (533)
T ss_pred CCCCCCEEEEEcC-CCHHHH-HHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHH
Confidence 5555 66665554 333333 45688899999998775 568899999999999999888776555543
No 257
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=32.27 E-value=2.5e+02 Score=22.07 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=33.2
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. . ....+.+++++.
T Consensus 144 GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~~~l~~~~~~a 195 (477)
T cd07113 144 GVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEA 195 (477)
T ss_pred ceEEEEcCCChHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHc
Confidence 7888899998876542 455688999999998652 2 345566666664
No 258
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=32.06 E-value=2.4e+02 Score=21.77 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+.. ....+.+++++.
T Consensus 73 Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 124 (409)
T PRK10090 73 GVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEI 124 (409)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHc
Confidence 789999999985443 35667888999999987532 356666777654
No 259
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=31.98 E-value=2.6e+02 Score=22.12 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+++++.
T Consensus 136 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKPs~~tp~t~~~l~~l~~~a 187 (487)
T PRK09457 136 GVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAELTVKLWQQA 187 (487)
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999887532 2456789999999998652 2 345566666664
No 260
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=31.80 E-value=2.5e+02 Score=21.88 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++.... .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 118 GVV~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~~~~~l~~~~~~a 169 (457)
T cd07090 118 GVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEA 169 (457)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHhcCCeeeecCCCcCcHHHHHHHHHHHHc
Confidence 788889999886543 2456789999999988753 2 355666676664
No 261
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=30.99 E-value=2.6e+02 Score=21.96 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
|..+ |++...+|-..-.- ..+++.+..|+..+..+ ....+.+...+++.++..++..+.....
T Consensus 76 g~~~g~~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 140 (546)
T PLN02330 76 GLRKGQVVVVVLPNVAEYG--IVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGK 140 (546)
T ss_pred CCCCCCEEEEECCCchHHH--HHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhh
Confidence 5555 77766666444333 45688999999888775 5678899999999999988876655443
No 262
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=30.93 E-value=73 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcE
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATV 116 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i 116 (149)
-+.+.+||++-++.+.+.+++++++.++
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~~~~v 313 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLPGIPV 313 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-TTCEE
T ss_pred ceEEEECCCcCCHHHHHHHHhhCCCCEE
Confidence 4688899999999999999999886454
No 263
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=30.91 E-value=2.7e+02 Score=21.96 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=44.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
|+++ |++...+|-.... . ..+++.+..|+..+..+ ....+.+...++..++..++....
T Consensus 76 g~~~g~~Val~~~n~~e~-~-~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 76 GVGRGDVVSCQLPNWWEF-T-VLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred CCCCCCEEEEECCCChHH-H-HHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEecc
Confidence 5666 7777777644333 3 56789999999998765 567899999999999998887553
No 264
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=30.88 E-value=2.5e+02 Score=21.72 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+..+ +++...++-. . .+...+++.+..|+..+..+ ..+++.+...+++.++..++........+
T Consensus 51 g~~~g~~v~l~~~~~-~-~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 116 (508)
T TIGR02262 51 GVKREERVLLLMLDG-V-DFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVI 116 (508)
T ss_pred CCCCCCEEEEECCCC-H-HHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHH
Confidence 4555 6655555422 2 23356788999999988775 57899999999999999988876655443
No 265
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=30.72 E-value=2.8e+02 Score=22.17 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|... |++....+-.... + ..+++.+..|+..+..+ ....+.+...+++.++..++........+
T Consensus 83 g~~~gd~V~i~~~n~~~~-v-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 148 (600)
T PRK08279 83 GVGKGDVVALLMENRPEY-L-AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAF 148 (600)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 5555 7777776644333 3 56789999999988775 56788999999999999998877655544
No 266
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=30.52 E-value=2.7e+02 Score=21.83 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=33.7
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. .....+.+.+++.
T Consensus 139 Gvv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 190 (471)
T cd07139 139 GVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEA 190 (471)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCCcCCHHHHHHHHHHHHc
Confidence 7888899988876552 346789999999998762 2356666666654
No 267
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=30.32 E-value=2.7e+02 Score=21.95 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=44.2
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~ 72 (149)
+... |++...++-..-. + ..+++.+..|+..+..+ ....+.+...+++.+++.++..+...
T Consensus 70 gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~ 132 (563)
T PRK06710 70 GVEKGDRVAIMLPNCPQA-V-IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVF 132 (563)
T ss_pred CCCCCCEEEEECCCChHH-H-HHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccch
Confidence 4555 7777666643333 3 45688899998888764 56789999999999999988866543
No 268
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=30.23 E-value=1.2e+02 Score=19.81 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=18.6
Q ss_pred EEEEecCCCCHH----H---HHHHHHhCCCCc--EEeeecccc
Q 032003 91 LVGSGAAPLGKE----L---MEECAKNVPSAT--VIQVVQFEH 124 (149)
Q Consensus 91 ~~~~gg~~~~~~----~---~~~~~~~~~~~~--i~~~YG~tE 124 (149)
..++||||+-+. + .+++++.+++.. ++++|--.|
T Consensus 69 vt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~i~~~tGy~~ee 111 (154)
T PRK11121 69 LSLSGGDPLHPQNVPDILKLVQRVKAECPGKDIWVWTGYKLDE 111 (154)
T ss_pred EEEECCCccchhhHHHHHHHHHHHHHHCCCCCEEEecCCCHHH
Confidence 567899998632 2 233444444333 445665444
No 269
>PRK06178 acyl-CoA synthetase; Validated
Probab=29.93 E-value=2.8e+02 Score=21.92 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
+..+ +++...+|-.. -.. ..+++.+..|+..+..+ ....+.+...+++.++..++..+.....+.
T Consensus 79 g~~~g~~V~i~~~n~~-~~~-~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~ 145 (567)
T PRK06178 79 GVGAGDRVAVFLPNCP-QFH-IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVE 145 (567)
T ss_pred CCCCCCEEEEECCCCc-HHH-HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHH
Confidence 4555 66666666333 333 45688899999888665 567899999999999999999887665543
No 270
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=29.86 E-value=2.7e+02 Score=21.77 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=32.1
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++=+. . ....+.+++++.
T Consensus 125 GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~l~~~a 176 (457)
T PRK09406 125 GVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRA 176 (457)
T ss_pred eeEEEECCccchHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHh
Confidence 7888899998865532 355688899999988652 2 344555555554
No 271
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=29.76 E-value=2.8e+02 Score=21.82 Aligned_cols=64 Identities=9% Similarity=-0.117 Sum_probs=45.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|... |++...+|-....- ..+++.+..|+..+..+ ...++.+...+++.++..++........+
T Consensus 60 g~~~gd~v~i~~~~~~~~~--~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 125 (542)
T PRK06018 60 GIKLGDRVATIAWNTWRHL--EAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPIL 125 (542)
T ss_pred CCCCCCEEEEEcCCchHHH--HHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHH
Confidence 5555 77766666444333 34678888999988775 56789999999999999888765544333
No 272
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=29.60 E-value=1.1e+02 Score=19.08 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=36.6
Q ss_pred CceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEe
Q 032003 39 GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118 (149)
Q Consensus 39 G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~ 118 (149)
|-.+.+.+..+.+.+.+.++...+-.....+.+=..+++ .+++||++...|.-.+.=..+.+.++ ++.+.|
T Consensus 18 ~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~-------~~~~Lk~I~~~~~G~d~id~~~a~~~--gI~V~n 88 (133)
T PF00389_consen 18 GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLE-------AAPNLKLISTAGAGVDNIDLEAAKER--GIPVTN 88 (133)
T ss_dssp TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHH-------HHTT-SEEEESSSSCTTB-HHHHHHT--TSEEEE
T ss_pred CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHh-------ccceeEEEEEcccccCcccHHHHhhC--eEEEEE
Confidence 334555555566666666666555433322211112211 12457777777776665555666555 466666
Q ss_pred eec
Q 032003 119 VVQ 121 (149)
Q Consensus 119 ~YG 121 (149)
.=|
T Consensus 89 ~~g 91 (133)
T PF00389_consen 89 VPG 91 (133)
T ss_dssp -TT
T ss_pred eCC
Confidence 533
No 273
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=29.28 E-value=2.8e+02 Score=21.78 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=26.6
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcC
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMA 46 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~ 46 (149)
.++....|+++-..+. +.+..+|..|.++++-+
T Consensus 138 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VV~KP 171 (479)
T cd07116 138 GVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKP 171 (479)
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCEEEEEC
Confidence 7888999998876553 56778999999999876
No 274
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=29.26 E-value=2.7e+02 Score=21.56 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 99 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~~~l~~~~~~a 150 (431)
T cd07095 99 GVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEA 150 (431)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 789999999886643 2466788999999998753 2 345555665553
No 275
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=29.19 E-value=30 Score=19.22 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHhCCCCcEEeeeccc
Q 032003 99 LGKELMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 99 ~~~~~~~~~~~~~~~~~i~~~YG~t 123 (149)
+..++.+++.+.||.+.+.-.+|++
T Consensus 9 L~~EL~kRl~~~yPd~~v~Vr~~s~ 33 (65)
T PF06183_consen 9 LESELTKRLHRQYPDAEVRVRPGSA 33 (65)
T ss_dssp HHHHHHHHHHHH-SS-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCceEeeeeccc
Confidence 4567888899999988888888866
No 276
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=29.10 E-value=2.8e+02 Score=21.61 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=33.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-... ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 121 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~Vilkps~~~p~~~~~l~~~l~~a 172 (457)
T cd07114 121 GVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEA 172 (457)
T ss_pred eEEEEECCCccHHHHHHHHHHHHHhcCCeEEeECCccchHHHHHHHHHHHHc
Confidence 688888898885543 3456788999999998753 2 345666666654
No 277
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=28.97 E-value=2.9e+02 Score=21.73 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-.... +.+..+|..|.++++-+. .....+.+.+++.
T Consensus 136 GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~~~~a 187 (482)
T cd07119 136 GVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIALFELIEEA 187 (482)
T ss_pred eeEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCccccHHHHHHHHHHHHc
Confidence 6888899988765432 346689999999998653 2355666777664
No 278
>PRK07470 acyl-CoA synthetase; Validated
Probab=28.89 E-value=2.8e+02 Score=21.61 Aligned_cols=62 Identities=6% Similarity=-0.076 Sum_probs=45.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
+..+ |++....+-.-.. ...+++.+..|+..+..+ ....+.+...+++.+++.++..+....
T Consensus 53 g~~~g~~v~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 116 (528)
T PRK07470 53 GVRKGDRILVHSRNCNQM--FESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE 116 (528)
T ss_pred CCCCCCEEEEEcCCCHHH--HHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH
Confidence 4555 6776666533333 245689999999988775 568899999999999999888765543
No 279
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=28.14 E-value=3e+02 Score=21.62 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=32.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcC-CC---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMA-KF---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~-~~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. ..+..+|..|.++++-+ .. ....+.+.+++.
T Consensus 128 GvV~~I~PwN~P~~~~~~~~~~ALaaGN~vv~KPs~~tp~~~~~l~~~~~~a 179 (462)
T PRK13968 128 GTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDA 179 (462)
T ss_pred ceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHc
Confidence 7888999998765432 35678899999999855 32 344555566554
No 280
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=27.94 E-value=3.2e+02 Score=21.90 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=29.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++..-+....+.+.+.|.++++-+. . ....+.+.+++.
T Consensus 172 GVv~~I~PwNfP~~~~~~~~~palaGN~VVlKPs~~tp~~~~~l~~~l~~a 222 (522)
T cd07123 172 GFVYAVSPFNFTAIGGNLAGAPALMGNVVLWKPSDTAVLSNYLVYKILEEA 222 (522)
T ss_pred ceEEEECCcccHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHc
Confidence 6777888988875443434444447999887652 2 355666666664
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.87 E-value=2.3e+02 Score=20.21 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHH------hcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhC
Q 032003 47 KFDLEMFLRAIE------KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (149)
Q Consensus 47 ~~~~~~~~~~l~------~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~ 111 (149)
..|.+.+.++++ +|++|.-..+|+.-..+++.... .. .+-.+.+-.+....++.++|++.+
T Consensus 16 AsDvE~iSkalQr~aLG~eYnITisSIiPTT~~eIA~raae-GA---DlvlIATDaD~~GReLA~kf~eeL 82 (290)
T COG4026 16 ASDVEVISKALQRLALGSEYNITISSIIPTTNVEIAKRAAE-GA---DLVLIATDADRVGRELAEKFFEEL 82 (290)
T ss_pred cchHHHHHHHHHHhhhcccceeEEEeeccCchHHHHHHhhc-cC---CEEEEeecCcchhHHHHHHHHHHH
Confidence 356777777764 78899999999999999876432 22 366788888888899988887764
No 282
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=27.71 E-value=3.1e+02 Score=21.65 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. . ....+.+++++.
T Consensus 137 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~a 188 (488)
T TIGR02299 137 GPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEA 188 (488)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECchhchHHHHHHHHHHHHc
Confidence 7888888998876532 456688999999998753 2 345566666665
No 283
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=27.69 E-value=2.2e+02 Score=23.06 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=50.9
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.+.+.||+...+|..--+.. .++++..-|+..... +.+.++.+.+.+.+-++..++.....++..
T Consensus 61 ~gvkGDrV~iymp~~pe~~~--a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~g 126 (528)
T COG0365 61 GGVKGDRVAIYMPNSPEAVI--ALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG 126 (528)
T ss_pred CCCCCCEEEEEcCCCHHHHH--HHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEeccccccc
Confidence 34534999999998776654 568888888877765 589999999999999999998776665544
No 284
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=27.44 E-value=1e+02 Score=18.42 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=15.2
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCCcEE
Q 032003 91 LVGSGAAPLGKELMEECAKNVPSATVI 117 (149)
Q Consensus 91 ~~~~gg~~~~~~~~~~~~~~~~~~~i~ 117 (149)
.+.+||.++++++.+..++. +++++
T Consensus 65 iIltg~~~~~~~v~~la~~~--~i~vi 89 (105)
T PF07085_consen 65 IILTGGLEPSEEVLELAKEL--GIPVI 89 (105)
T ss_dssp EEEETT----HHHHHHHHHH--T-EEE
T ss_pred EEEeCCCCCCHHHHHHHHHC--CCEEE
Confidence 46778899999999988877 46644
No 285
>PLN02467 betaine aldehyde dehydrogenase
Probab=27.28 E-value=3.2e+02 Score=21.76 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. .....+.+++++.
T Consensus 153 GVv~~I~PwN~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~~~l~~~~~ea 204 (503)
T PLN02467 153 GVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREV 204 (503)
T ss_pred ceEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHc
Confidence 7899999999865542 455688999999998753 2456666666664
No 286
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=27.18 E-value=3.1e+02 Score=21.48 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~ 59 (149)
.++....|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++
T Consensus 119 Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~~~~~~~l~~~~~~ 169 (455)
T cd07120 119 GVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAE 169 (455)
T ss_pred eeEEEECCCchHHHHHHHHHHHHHHcCCEEEeECCCCChHHHHHHHHHHHH
Confidence 788899999886544 2456688999999998753 2 34556666666
No 287
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=27.13 E-value=2.3e+02 Score=20.11 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=33.1
Q ss_pred hcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecC
Q 032003 36 LQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAA 97 (149)
Q Consensus 36 l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 97 (149)
+-.|.++++-.+.....+.+.+.+.++|.+--.......+.+.+ .++.++.||.
T Consensus 91 I~~g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~--------~~~v~l~GG~ 144 (251)
T PRK13509 91 CNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQE--------HDSVIIMGGQ 144 (251)
T ss_pred CCCCCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCC--------CCEEEEECCe
Confidence 34455555555666777888886666776666666666665432 2445666665
No 288
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=26.85 E-value=3.2e+02 Score=21.62 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=32.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-CC---HHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++-+. .. ...+.+++++.
T Consensus 148 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~a 199 (482)
T PRK11241 148 GVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRA 199 (482)
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHhCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 7899999999876653 346688899999998763 22 34455555553
No 289
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.77 E-value=1e+02 Score=20.77 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=27.2
Q ss_pred CceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHH----HHHHHHHhCCCCcEEeeeccc
Q 032003 61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKE----LMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 61 ~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~----~~~~~~~~~~~~~i~~~YG~t 123 (149)
++-.+-+.|..+....+.-+ .+.+.++.+.. -...+++ +.+.+.+.-+ --++-+.|+.
T Consensus 50 ~vfllG~~~~v~~~~~~~l~---~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~s~~-dil~VglG~P 111 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKVKLI---KEYPKLKIVGA-FGPLEPEERKAALAKIARSGA-GIVFVGLGCP 111 (177)
T ss_pred eEEEECCCHHHHHHHHHHHH---HHCCCCEEEEE-CCCCChHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 45555557777766655321 23455655554 3334433 2334444322 2244455543
No 290
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=26.63 E-value=3.2e+02 Score=21.55 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=29.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-CC---HHHHHHHHH
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAIE 58 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~ 58 (149)
.+++...|+++-.... ..+..+|..|.++++-+. .. ...+.+.++
T Consensus 131 GVV~~I~PwN~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~~~l~~ll~ 180 (465)
T PRK15398 131 GVIGAVTPSTNPTETIINNAISMLAAGNSVVFSPHPGAKKVSLRAIELLN 180 (465)
T ss_pred EEEEEeeCCCCchHHHHHHHHHHHHhCCcEEEECCccchHHHHHHHHHHH
Confidence 7888999987654332 355688999999998763 22 344455544
No 291
>PRK12582 acyl-CoA synthetase; Provisional
Probab=26.42 E-value=3.5e+02 Score=21.90 Aligned_cols=58 Identities=7% Similarity=0.027 Sum_probs=42.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCC-----HHHHHHHHHhcCceEEEec
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFD-----LEMFLRAIEKHRVTHIWVV 68 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~-----~~~~~~~l~~~~~t~~~~~ 68 (149)
.|..+ |++...++ +..-.+ ..+++.+..|+..+..+ ..+ .+.+...+++.++..++..
T Consensus 100 ~Gv~~gd~V~i~~~-n~~e~~-~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~ 164 (624)
T PRK12582 100 LGLDPGRPVMILSG-NSIEHA-LMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQ 164 (624)
T ss_pred cCCCCCCEEEEecC-CCHHHH-HHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEec
Confidence 35666 88877777 555544 56789999999988775 333 3788889999988877764
No 292
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=26.03 E-value=2.5e+02 Score=22.49 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL 125 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~ 125 (149)
+..|.+.+||+.-+.++.+.+.+.|+ +++++. +..|+
T Consensus 442 ~~~rilvtGGAS~N~~Ilq~iadVf~-apVy~~-~~~~s 478 (545)
T KOG2531|consen 442 PPTRILVTGGASRNEAILQIIADVFG-APVYTI-EGPNS 478 (545)
T ss_pred CCceEEEecCccccHHHHHHHHHHhC-CCeEee-cCCch
Confidence 56889999999999999999999998 888888 44443
No 293
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=25.89 E-value=3.3e+02 Score=21.37 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=43.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
+... |++....+ ++.-.+ ..+++.+..|+.++..+ ...++.+...+++.++..++..+.
T Consensus 74 g~~~g~~V~i~~~-~~~~~~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~ 134 (538)
T TIGR03208 74 GVGRGDVVSFQLP-NRWEFT-ALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSV 134 (538)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccc
Confidence 5555 77766666 444444 45688899999888664 567899999999999998887553
No 294
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=25.88 E-value=3.3e+02 Score=21.38 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=33.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+. +.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 143 GVv~~I~p~N~P~~~~~~~~~~AL~aGN~VvlKps~~~p~~~~~l~~~~~~a 194 (476)
T cd07091 143 GVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEA 194 (476)
T ss_pred eEEEEECCCcCHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHc
Confidence 6888999998865543 456689999999988763 2 346666777664
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.50 E-value=1.8e+02 Score=19.31 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHHHHh--cCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHH----HHHHHHHhCCCCcEEeeecc
Q 032003 51 EMFLRAIEK--HRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKE----LMEECAKNVPSATVIQVVQF 122 (149)
Q Consensus 51 ~~~~~~l~~--~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~----~~~~~~~~~~~~~i~~~YG~ 122 (149)
..+++..++ .++-.+.+.|..+....+.- ....+.++.+..--.+...+ ..+.+.+.-| --++-+.|+
T Consensus 36 ~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~p-div~vglG~ 109 (171)
T cd06533 36 PALLELAAQKGLRVFLLGAKPEVLEKAAERL---RARYPGLKIVGYHHGYFGPEEEEEIIERINASGA-DILFVGLGA 109 (171)
T ss_pred HHHHHHHHHcCCeEEEECCCHHHHHHHHHHH---HHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCC-CEEEEECCC
Confidence 344444443 45666666777776665321 12344555554333333322 2444444433 224444444
No 296
>PRK13382 acyl-CoA synthetase; Provisional
Probab=25.31 E-value=3.4e+02 Score=21.36 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=45.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
+..+ |++...++ +....+ ..+++.+..|+.++..+ ....+.+...+++.++..++.......
T Consensus 89 g~~~g~~V~i~~~-n~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 152 (537)
T PRK13382 89 PIGEPRVVGIMCR-NHRGFV-EALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSA 152 (537)
T ss_pred CCCCCCEEEEEec-CcHHHH-HHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHH
Confidence 5555 66666665 333333 56789999999999875 567899999999999999888665443
No 297
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.28 E-value=2.5e+02 Score=19.84 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=52.4
Q ss_pred hHhc-CCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCC-------CCHHHHH
Q 032003 34 GQLQ-KGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-------LGKELME 105 (149)
Q Consensus 34 ~~l~-~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~-------~~~~~~~ 105 (149)
..+. .|.++++-.+.....+.+.+.+.++|.+--.+.....+... +.++.++.||.- ..+...+
T Consensus 88 a~lI~~gd~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~--------~~~~vil~GG~~~~~~~~~~G~~a~~ 159 (240)
T PRK10411 88 LAWIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKR--------ERIQLISSGGTLERKYGCYVNPSLIS 159 (240)
T ss_pred HHhCCCCCEEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcC--------CCCEEEEECCEEeCCCCceECHHHHH
Confidence 3444 45555555566677788888766677777677777666443 235567777753 3355566
Q ss_pred HHHHhCCCCcEEeeecccccc
Q 032003 106 ECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 106 ~~~~~~~~~~i~~~YG~tE~~ 126 (149)
.+++...+.-++..-|-++.+
T Consensus 160 ~l~~~~~d~afis~~gi~~~~ 180 (240)
T PRK10411 160 QLKSLEIDLFIFSCEGIDSSG 180 (240)
T ss_pred HHHhcCCCEEEEeceeECCCC
Confidence 666654445677777776443
No 298
>PRK09192 acyl-CoA synthetase; Validated
Probab=25.23 E-value=3.5e+02 Score=21.52 Aligned_cols=64 Identities=6% Similarity=-0.119 Sum_probs=46.1
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-C-------CHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F-------DLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~-------~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|+.+ |++...++ ++.-.+ ..+++.+..|+..+..+. . ..+++...+++.++..++........+
T Consensus 70 gi~~gd~V~l~~~-n~~~~~-~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~ 142 (579)
T PRK09192 70 GLKPGDRVALIAE-TDGDFV-EAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWV 142 (579)
T ss_pred CCCCCCEEEEEcC-CchhHH-HHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHH
Confidence 5566 77777776 455544 567899999999988752 1 158899999999999888876654433
No 299
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=24.70 E-value=3.3e+02 Score=21.00 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=39.8
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
+++....+ +..-.+ ..+++.+..|+.++..+ ....+.+...+++.++..++...
T Consensus 46 ~~V~i~~~-n~~e~~-~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (452)
T PRK07445 46 PKILLAES-DPLQFL-AAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLD 100 (452)
T ss_pred CeEEEecC-CCHHHH-HHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecC
Confidence 66666655 333333 45688899999999875 56788999999999998877643
No 300
>PRK13391 acyl-CoA synthetase; Provisional
Probab=24.64 E-value=3.4e+02 Score=21.09 Aligned_cols=64 Identities=5% Similarity=-0.050 Sum_probs=47.2
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
+..+ +++....+-.... + ..+++.+..|...+..+ ..+.+.+...+++.++..++..+......
T Consensus 45 g~~~~~~V~v~~~~~~~~-~-~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 110 (511)
T PRK13391 45 GLKRGDHVAIFMENNLRY-L-EVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVA 110 (511)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHH
Confidence 5555 7776666644333 3 45688899999998775 56889999999999999998877665443
No 301
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=24.63 E-value=3.6e+02 Score=21.47 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=33.5
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . ....+.+.+.+.
T Consensus 144 GVV~~I~PwNfP~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~~~l~~~~~~a 195 (489)
T cd07126 144 GPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLC 195 (489)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7889999999876443 346789999999998652 2 345566666554
No 302
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=24.43 E-value=3.4e+02 Score=21.03 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=33.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~ 60 (149)
.+++...|+++-... ...+..+|..|.++++-+.. ....+.+.+++.
T Consensus 125 GVv~~i~p~N~P~~~~~~~~~~ALaaGN~VI~Kps~~~p~~~~~l~~~l~~a 176 (453)
T cd07149 125 GVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEA 176 (453)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 688888888876633 35667899999999987532 345566666654
No 303
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=24.39 E-value=1.8e+02 Score=22.12 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=33.3
Q ss_pred cHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccc
Q 032003 68 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 68 ~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~t 123 (149)
.|..+.++.+. .+...+++++.+.+|| ++++..+.+.+. +.+ .+.||--
T Consensus 262 ~~~l~~~vr~~--Ld~~g~~~vkI~aSgG--ine~~I~~~~~~--g~p-iD~~GVG 310 (352)
T PRK07188 262 NPELIKALRKA--LDENGGKHVKIIVSSG--FDAKKIREFEAQ--NVP-VDIYGVG 310 (352)
T ss_pred cHHHHHHHHHH--HhhCCCCCcEEEEeCC--CCHHHHHHHHHc--CCC-ccEEecC
Confidence 46666666543 2334467899999999 999999888766 344 5777743
No 304
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=24.27 E-value=3.5e+02 Score=21.17 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=33.4
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+.. .+..+.+.+++.
T Consensus 143 GVv~~I~p~N~P~~~~~~~i~~AL~aGN~vilKps~~~~~~~~~l~~~l~~a 194 (473)
T cd07082 143 GVVLAIGPFNYPLNLTVSKLIPALIMGNTVVFKPATQGVLLGIPLAEAFHDA 194 (473)
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHc
Confidence 688888998886542 35667999999999987532 355666666653
No 305
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.04 E-value=86 Score=20.64 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCceEEEecHH-----HHHHHHhC
Q 032003 50 LEMFLRAIEKHRVTHIWVVPP-----LILALAKH 78 (149)
Q Consensus 50 ~~~~~~~l~~~~~t~~~~~P~-----~~~~l~~~ 78 (149)
.+.+.+.++++++++++++|- ++..+.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~ 37 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLPLLDALEKS 37 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhh
Confidence 467899999999999999884 55555554
No 306
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=23.98 E-value=58 Score=19.01 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhCCCCc--EEeeeccc
Q 032003 98 PLGKELMEECAKNVPSAT--VIQVVQFE 123 (149)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--i~~~YG~t 123 (149)
++..++.+++...||.+. +.-.||++
T Consensus 20 AL~~EL~kRl~~~fPd~~~~v~Vr~~s~ 47 (81)
T PRK10597 20 ALAGELSRRIQYAFPDNEGHVSVRYAAA 47 (81)
T ss_pred HHHHHHHHHHHhhCCCCCccEEEeecCC
Confidence 366788888899999877 88899887
No 307
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=23.96 E-value=76 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCceEEEecH
Q 032003 51 EMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 51 ~~~~~~l~~~~~t~~~~~P 69 (149)
+.+.+.+++++++.++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvP 20 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVP 20 (157)
T ss_pred hHHHHHHHHCCCeEEEecC
Confidence 4678999999999999998
No 308
>PRK06188 acyl-CoA synthetase; Validated
Probab=23.89 E-value=3.5e+02 Score=21.04 Aligned_cols=59 Identities=12% Similarity=-0.031 Sum_probs=43.3
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
+..+ +++...++-.-.. + ..+++.+..|...+..+ ..+.+.+...+++.+++.+...+.
T Consensus 58 gv~~~~~V~i~~~~~~~~-~-~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (524)
T PRK06188 58 GLGTGDAVALLSLNRPEV-L-MAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPA 118 (524)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecc
Confidence 4555 6666666533332 3 45688999999999775 567888999999999999888765
No 309
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=23.88 E-value=1.4e+02 Score=16.35 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHhHhcCCceEEEcCCCCHHHHHHHHHhc-Cc
Q 032003 29 AVITCGQLQKGSCIILMAKFDLEMFLRAIEKH-RV 62 (149)
Q Consensus 29 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~-~~ 62 (149)
++..+..|-.|-.+++....+|.-+...+++. +.
T Consensus 16 il~~~~~L~~Ge~l~lv~d~~P~pL~~~l~~~~g~ 50 (69)
T PF10006_consen 16 ILEALDELPPGETLELVNDHDPRPLYPQLEERRGF 50 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCCHHHHHHHHHhCCC
Confidence 36778999999999999999999999999887 44
No 310
>PRK07787 acyl-CoA synthetase; Validated
Probab=23.49 E-value=3.4e+02 Score=20.79 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=39.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
|++....+ .....+ ..+++.+..|+..+..+ ...++.+...+++.++..+...+
T Consensus 46 ~~V~l~~~-~~~~~~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 100 (471)
T PRK07787 46 RRVAVLAT-PTLATV-LAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPA 100 (471)
T ss_pred CEEEEECC-CCHHHH-HHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecC
Confidence 55555554 233333 56789999999998775 56889999999999998888754
No 311
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=23.30 E-value=3.5e+02 Score=20.87 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=54.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhcCceEEEecH---HHHHHHHhCCCCCcCCC
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVP---PLILALAKHGLVKKFDL 86 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P---~~~~~l~~~~~~~~~~l 86 (149)
|.+++ .+.-..|+ ...+.++..|+++.+.++- .-.-+.+.+++++...+-.-. .+++-|.. ......
T Consensus 91 d~Vm~--AivG~aGL-~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L~~---~~~~~v 164 (385)
T COG0743 91 DVVMN--AIVGAAGL-LPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCLQG---ETQKGV 164 (385)
T ss_pred CEEee--hhhhhccc-HHHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHcCc---cccCcc
Confidence 54443 34567777 7788999999999999863 356777889999888766533 33333321 112223
Q ss_pred CCceEEEEecCCCCHHHHHHH
Q 032003 87 SSLKLVGSGAAPLGKELMEEC 107 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~ 107 (149)
.++ .+..+|+|......+.+
T Consensus 165 ~~i-iLTASGGpFR~~~~~~L 184 (385)
T COG0743 165 KKI-ILTASGGPFRDKSLEEL 184 (385)
T ss_pred eEE-EEecCCCCcCCCCHHHH
Confidence 333 44556667665555544
No 312
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=23.20 E-value=3.5e+02 Score=20.71 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~ 72 (149)
+..+ |++....|-.... + ..+++.+..|+..+..+ ..+++.+...+++.++..++......
T Consensus 48 g~~~~~~v~i~~~~~~~~-~-~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 110 (483)
T PRK03640 48 GVKKGDRVALLMKNGMEM-I-LVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFE 110 (483)
T ss_pred CCCCCCEEEEECCCCHHH-H-HHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhh
Confidence 4555 7777777655443 3 56789999999999886 56889999999999888777654433
No 313
>PF13213 DUF4021: Protein of unknown function (DUF4021)
Probab=23.08 E-value=33 Score=17.39 Aligned_cols=10 Identities=0% Similarity=-0.220 Sum_probs=7.5
Q ss_pred Eeeecccccc
Q 032003 117 IQVVQFEHLY 126 (149)
Q Consensus 117 ~~~YG~tE~~ 126 (149)
--.|||.|+.
T Consensus 27 NGlYGMPET~ 36 (46)
T PF13213_consen 27 NGLYGMPETD 36 (46)
T ss_pred ccccCCCccc
Confidence 3479999974
No 314
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=23.07 E-value=4.5e+02 Score=21.94 Aligned_cols=47 Identities=9% Similarity=-0.103 Sum_probs=31.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcC-CC---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMA-KF---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~-~~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++=+ .. ....+.+++++-
T Consensus 146 Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~Vv~KPs~~tp~~~~~l~~~~~~a 197 (663)
T TIGR02278 146 GVAVQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAYVAEALVRTMVES 197 (663)
T ss_pred ceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 677778888875432 356678999999988755 22 345566666663
No 315
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=23.04 E-value=4.1e+02 Score=21.55 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=51.8
Q ss_pred CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003 11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (149)
Q Consensus 11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 77 (149)
.+. |++....|-..-.. ...++++..|+.+.-.+ ..++..+...+++-++..++.....+..+.+
T Consensus 69 i~~gDvV~i~~pNs~~~~--~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~ 135 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFV--ELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISE 135 (537)
T ss_pred CCCCCEEEEEcCCCHHHH--HHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHH
Confidence 455 89988888554443 35678899999888775 6799999999999999999998888877744
No 316
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=22.93 E-value=4.5e+02 Score=21.92 Aligned_cols=47 Identities=13% Similarity=-0.025 Sum_probs=32.4
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++=+. .....+.+.+.+-
T Consensus 150 GVv~~I~PwNfP~~~~~~~i~pALaaGN~VV~KPse~tp~~a~~l~~~~~ea 201 (675)
T PRK11563 150 GVAVHINAFNFPVWGMLEKLAPAFLAGVPAIVKPATATAYLTEAVVRLIVES 201 (675)
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHc
Confidence 677778888875432 3566789999999988652 2356667777663
No 317
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=22.91 E-value=1.9e+02 Score=23.08 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-... .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 156 GVV~~I~P~N~Pl~~~~~~~~~ALaaGN~VIlKPs~~tp~~~~~l~~ll~ea 207 (524)
T PRK09407 156 GVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTPLTALAAVELLYEA 207 (524)
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 788899998887443 3457799999999998753 2 345556666654
No 318
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=22.78 E-value=4.7e+02 Score=23.71 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=56.5
Q ss_pred EEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc--
Q 032003 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL-- 89 (149)
Q Consensus 16 ~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l-- 89 (149)
++...+.+-..|+..-.+...+.|.+-++.+. -+|..+++.++++++.-.+..=..+....+.-.....+++..
T Consensus 987 l~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gn 1066 (1363)
T KOG3628|consen 987 LLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGN 1066 (1363)
T ss_pred eEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhc
Confidence 34444445555555556677788888666653 479999999999998888776666665554322222222211
Q ss_pred ----eEEEEecCCCCHHHHHHHHHhC
Q 032003 90 ----KLVGSGAAPLGKELMEECAKNV 111 (149)
Q Consensus 90 ----r~~~~gg~~~~~~~~~~~~~~~ 111 (149)
..+...-++....+.+-+.+.+
T Consensus 1067 n~s~s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1067 NTSSSIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred ccccceeeecCCccHHHHHHHHHHHH
Confidence 2333344555555555555543
No 319
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=22.75 E-value=3.6e+02 Score=20.75 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=41.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
|... |++....+-.-.. + ..+++.+..|+.++..+ ....+.+...+++.++..++....
T Consensus 46 g~~~~~~V~i~~~~~~~~-~-~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 106 (502)
T TIGR01734 46 ILPKKSPIIVYGHMEPHM-L-VAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAE 106 (502)
T ss_pred CCCCCCeEEEEeCCCHHH-H-HHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccc
Confidence 4445 5555555533333 2 45689999999888776 456788889999999888887553
No 320
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=22.74 E-value=4e+02 Score=21.25 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=33.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 162 GVV~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~a 213 (500)
T TIGR01238 162 GVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEA 213 (500)
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHc
Confidence 789999999886544 3466789999999998763 2 244455555554
No 321
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=22.70 E-value=3.9e+02 Score=21.18 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 159 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~a 210 (494)
T PRK09847 159 GVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEA 210 (494)
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHc
Confidence 789999999886654 2455678999999998753 2 345566666654
No 322
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.40 E-value=3.9e+02 Score=21.01 Aligned_cols=62 Identities=8% Similarity=-0.118 Sum_probs=44.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
|..+ |++...+|-..-. . ..+++.+..|+.++..+ ...++.+...+++.++..+...+.+..
T Consensus 60 g~~~~d~v~i~~~~~~~~-~-~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (539)
T PRK07008 60 GVEPGDRVGTLAWNGYRH-L-EAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLP 123 (539)
T ss_pred CCCCCCEEEEEcCCcHHH-H-HHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHH
Confidence 5556 7777777644333 2 34578888999888775 568899999999999998887765543
No 323
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=22.33 E-value=3.8e+02 Score=20.86 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ ...+..+|..|.++++-+. . ....+.+.+++.
T Consensus 125 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~a 176 (456)
T cd07145 125 GVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEA 176 (456)
T ss_pred eeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHc
Confidence 688889999886644 2466789999999998763 2 345666777663
No 324
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=22.24 E-value=2.3e+02 Score=22.02 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=32.4
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ ...+..+|..|.++++-+. . ....+.+++++.
T Consensus 120 GvV~~I~p~N~P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~~~l~~~~~~a 171 (454)
T cd07101 120 GVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTALTALWAVELLIEA 171 (454)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHc
Confidence 688889998886443 3457789999999998653 2 344555666553
No 325
>PRK07638 acyl-CoA synthetase; Validated
Probab=22.03 E-value=3.7e+02 Score=20.65 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=41.2
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 12 ~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
..+++...++- ..-.+ ..+++.+..|+..+..+ ...++.+.+.+++.++..++...
T Consensus 49 ~~~~v~i~~~~-~~~~~-~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~ 105 (487)
T PRK07638 49 KNKTIAILLEN-RIEFL-QLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTER 105 (487)
T ss_pred CCCEEEEEcCC-CHHHH-HHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEec
Confidence 33666555553 33333 56789999999999875 56889999999999998887765
No 326
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=21.87 E-value=4.3e+02 Score=21.30 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=29.1
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++...+......+.+.|.++++-+. . ....+.+.+++.
T Consensus 172 GVv~~I~PwN~P~~~~~~~~a~ALaGN~VVlKPs~~tp~~~~~l~~~~~~a 222 (533)
T TIGR01236 172 GFVYAISPFNFTAIAGNLPGAPALMGNTVIWKPSITATLSNYLTMRILEEA 222 (533)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHHhCCeEEEECCCcCCHHHHHHHHHHHhc
Confidence 6778888988775543333333337999887652 2 345566666654
No 327
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.69 E-value=2.1e+02 Score=21.22 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=32.4
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~ 59 (149)
.++...-=+..-.|+ ..+..++..|+-+++.| +++.+.+.+.+++
T Consensus 160 ~rv~ivEvMGR~~G~-lAl~~~la~gad~iliPE~~~~~~~l~~~i~~ 206 (301)
T TIGR02482 160 ERAFVIEVMGRHAGD-LALYSGIATGAEIIIIPEFDYDIDELIQRLKE 206 (301)
T ss_pred CCEEEEEeCCCCHHH-HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHH
Confidence 344445445666676 66788999999999887 5788888887753
No 328
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=21.26 E-value=4.1e+02 Score=20.88 Aligned_cols=47 Identities=6% Similarity=-0.031 Sum_probs=32.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ .+.+..+|..|.++++-+. . ....+.+.+++.
T Consensus 135 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~a 186 (478)
T cd07086 135 GVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLTAIAVTKILAEV 186 (478)
T ss_pred eeEEEECCCCcHHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHHHHHHHHh
Confidence 789999998875433 3567899999999998763 2 234555555553
No 329
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=21.23 E-value=4e+02 Score=20.67 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++.... .+.+..+|..|.++++-+. .....+.+.+++.
T Consensus 121 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~t~~~l~~~~~~a 172 (451)
T cd07150 121 GVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEA 172 (451)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHhcCCeEEEECCccCcHHHHHHHHHHHHh
Confidence 688899998886643 2567899999999998753 2345666666664
No 330
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=21.21 E-value=4.7e+02 Score=21.50 Aligned_cols=65 Identities=8% Similarity=-0.070 Sum_probs=46.6
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
|..+ |++...++-. .-.+ ...++.+..|+..+.. +...++.+...+++.++..++.....+...+
T Consensus 97 Gv~~gd~V~i~~~n~-~ew~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 97 GAEPGSRVGIYGSNC-PQWI-VAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred CCCCCCEEEEEcCCC-HHHH-HHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 5666 7766665532 2223 4567889999988866 4678999999999999999998766444443
No 331
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=21.19 E-value=3e+02 Score=19.52 Aligned_cols=72 Identities=18% Similarity=-0.001 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHhc--CceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeee
Q 032003 48 FDLEMFLRAIEKH--RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVV 120 (149)
Q Consensus 48 ~~~~~~~~~l~~~--~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~Y 120 (149)
.+.+..-+.-+.+ .-.++..+-..++.|+.--+..-.+-..-..+..||+-+-+...+.|++.+. .+++.-|
T Consensus 185 i~~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~l~-l~v~~P~ 258 (277)
T COG4820 185 ISLEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQLA-LQVHLPQ 258 (277)
T ss_pred cCHhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEecccccCccHHHHHHHHhc-cccccCC
Confidence 4555555544444 4556677777788887533222222233345677887777777777888774 5555443
No 332
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=21.07 E-value=4.4e+02 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=32.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.+++...|+++-..+ .+.+..+|..|.++++=+. .....+.+.+++-
T Consensus 146 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~ea 197 (513)
T cd07128 146 GVAVHINAFNFPVWGMLEKFAPALLAGVPVIVKPATATAYLTEAVVKDIVES 197 (513)
T ss_pred cEEEEECCcccHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 667778888875432 2556799999999988652 2356667777663
No 333
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=20.91 E-value=3.9e+02 Score=20.48 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=41.2
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
+..+ +++....+-... .+ ..+++.+..|+..+..+ ...++.+...++..++..++...
T Consensus 48 g~~~~~~v~~~~~~~~~-~~-~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (503)
T PRK04813 48 KLPDKSPIIVFGHMSPE-ML-ATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE 107 (503)
T ss_pred CCCCCCEEEEEcCCCHH-HH-HHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecc
Confidence 4454 777666663333 23 55688999999888775 45778888899998888887653
No 334
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=20.89 E-value=5.7e+02 Score=22.37 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=47.2
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
|++...+|-.... . ..+++.+..|+..+..+ ...++++...+++.+++.++..+.....+.
T Consensus 666 ~~V~i~~~n~~~~-~-~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 666 ENVGILLPPSVAG-A-LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred CeEEEECCCchHH-H-HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 7777777644333 3 45689999999888775 567899999999999999999888776664
No 335
>PRK13390 acyl-CoA synthetase; Provisional
Probab=20.72 E-value=4e+02 Score=20.56 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=42.9
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
|..+ |++....+-.. -.+ ..+++.+..|+..+..+ ...++.+...+++.++..+.....
T Consensus 45 gv~~gd~V~i~~~n~~-~~~-~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 105 (501)
T PRK13390 45 GLRTGDVVALLSDNSP-EAL-VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAA 105 (501)
T ss_pred CCCCCCEEEEEeCCCH-HHH-HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcch
Confidence 5555 77766666333 333 46789999999988775 568889999999999888776543
No 336
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=20.70 E-value=3.1e+02 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHhcCceEEEecHH
Q 032003 48 FDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 48 ~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.+++.+-+.++++++..++.+|+
T Consensus 213 ~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 213 IDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred CCHHHHHHHHhhcCCcEEEECCC
Confidence 45555555555555555555553
No 337
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=20.65 E-value=2.2e+02 Score=21.24 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.0
Q ss_pred EEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHh
Q 032003 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEK 59 (149)
Q Consensus 15 ~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~ 59 (149)
++...-=+.-..|+ ..+..++..|+.+++.| +++.+.+.+.+++
T Consensus 161 rv~ivEvMGR~~G~-LA~~~ala~ga~~iliPE~~~~~~~~~~~i~~ 206 (317)
T cd00763 161 RISVVEVMGRHCGD-IALAAGIAGGAEFIVIPEAEFDREEVANRIKA 206 (317)
T ss_pred CEEEEEeCCCChHH-HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 44444445656666 56788899999999887 5788888887753
No 338
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=20.59 E-value=5.6e+02 Score=22.13 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=31.2
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCC----CHHHHHHHHH
Q 032003 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIE 58 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~----~~~~~~~~l~ 58 (149)
.+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+.++
T Consensus 110 GVv~~I~pwn~P~~~~~~~~~~ALaaGN~vVlKps~~a~~t~~~~~~l~~ 159 (862)
T PRK13805 110 GVIAGITPTTNPTSTAIFKALIALKTRNPIIFSFHPRAQKSSIAAAKIVL 159 (862)
T ss_pred eEEEEEeCCCChhHHHHHHHHHHHHhCCcEEEECCcchHHHHHHHHHHHH
Confidence 78888889888665433 667889999999987632 2344455544
No 339
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.46 E-value=4.3e+02 Score=20.76 Aligned_cols=62 Identities=6% Similarity=-0.115 Sum_probs=43.8
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~ 73 (149)
+..+ |++....+ ...-.+ ..+++.+..|+..+..+ ...++.+...+++.++..++..+....
T Consensus 63 g~~~g~~V~i~~~-~~~~~~-~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~ 126 (542)
T PRK07786 63 GVGFGDRVLILML-NRTEFV-ESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAP 126 (542)
T ss_pred CCCCCCEEEEECC-CCHHHH-HHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHH
Confidence 4555 66655555 333333 45788899999998775 567899999999999988877665443
No 340
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=20.33 E-value=1e+02 Score=20.03 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=27.0
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFE 123 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~t 123 (149)
++....+...|..+--.+.+.+.+..+..+..-.||+|
T Consensus 60 l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 60 LPWADVVIITGSTLVNGTIDDILELARNAREVILYGPS 97 (147)
T ss_dssp GGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCC
T ss_pred HccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecC
Confidence 34456777777777777777777776546678899998
No 341
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=20.16 E-value=2.7e+02 Score=18.24 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=54.1
Q ss_pred HhcCCceEEEcCCCCHHHHHHHHHhc-CceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCC-------CHHHHHH
Q 032003 35 QLQKGSCIILMAKFDLEMFLRAIEKH-RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPL-------GKELMEE 106 (149)
Q Consensus 35 ~l~~G~~~v~~~~~~~~~~~~~l~~~-~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~-------~~~~~~~ 106 (149)
-+-.|.++++-.+.....+.+.+.+. ++|.+--.......+.+.+ ..+.++.||.-- .+...+.
T Consensus 16 ~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~--------~~~vi~~GG~~~~~~~~~~G~~a~~~ 87 (161)
T PF00455_consen 16 LIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENP--------NIEVILLGGEVNPKSLSFVGPIALEA 87 (161)
T ss_pred hCCCCCEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcC--------ceEEEEeCCEEEcCCCcEECchHHHH
Confidence 34556666666677888889988887 7887777777777776543 466777777442 3455566
Q ss_pred HHHhCCCCcEEeeeccccc
Q 032003 107 CAKNVPSATVIQVVQFEHL 125 (149)
Q Consensus 107 ~~~~~~~~~i~~~YG~tE~ 125 (149)
+++...+.-++..-|-++-
T Consensus 88 l~~~~~d~afi~~~gi~~~ 106 (161)
T PF00455_consen 88 LRQFRFDKAFIGADGISEE 106 (161)
T ss_pred HHhhccceEEecccEecCC
Confidence 6665444556666666653
No 342
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=20.12 E-value=3.3e+02 Score=19.62 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCC
Q 032003 49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLG 100 (149)
Q Consensus 49 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~ 100 (149)
-.+.-.+.+++.++.+..++|.=+..+++... ..+..++.++.-..-++
T Consensus 165 Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l~~l~~ivlD~s~~D 213 (252)
T PF14617_consen 165 KLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSLSNLKRIVLDWSYLD 213 (252)
T ss_pred cHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCcccCeEEEEcCCccc
Confidence 45555667788899999999999999986543 34677888888776554
Done!