Query 032003
Match_columns 149
No_of_seqs 128 out of 1068
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d1s_A Luciferase, luciferin 4 99.9 2.6E-20 8.8E-25 143.2 16.5 122 9-131 231-353 (548)
2 3rix_A Luciferase, luciferin 4 99.8 3.9E-20 1.3E-24 142.2 16.0 123 10-133 230-353 (550)
3 3ni2_A 4-coumarate:COA ligase; 99.8 2E-20 6.9E-25 143.4 13.7 121 9-129 218-339 (536)
4 3fce_A D-alanine--poly(phospho 99.8 1.4E-19 4.7E-24 138.0 12.2 122 8-130 179-304 (512)
5 1pg4_A Acetyl-COA synthetase; 99.8 2.8E-19 9.5E-24 140.0 13.2 123 8-130 292-423 (652)
6 1mdb_A 2,3-dihydroxybenzoate-A 99.8 1.5E-19 5E-24 138.7 11.3 120 8-128 217-338 (539)
7 3e7w_A D-alanine--poly(phospho 99.8 2.3E-19 8E-24 136.7 12.2 122 8-130 178-303 (511)
8 1ry2_A Acetyl-coenzyme A synth 99.8 6.4E-19 2.2E-23 138.2 13.1 123 8-130 298-429 (663)
9 3etc_A AMP-binding protein; ad 99.8 8.7E-19 3E-23 135.6 13.7 123 8-132 260-385 (580)
10 3c5e_A Acyl-coenzyme A synthet 99.8 9E-19 3.1E-23 135.3 13.8 122 8-131 241-365 (570)
11 3o83_A Peptide arylation enzym 99.8 2.5E-19 8.6E-24 137.6 9.5 122 8-130 226-349 (544)
12 1v25_A Long-chain-fatty-acid-C 99.8 6.6E-19 2.2E-23 135.2 11.7 119 9-130 214-334 (541)
13 3tsy_A Fusion protein 4-coumar 99.8 6E-19 2E-23 143.4 12.0 122 9-130 265-387 (979)
14 3hgu_A EHPF; phenazine, antibi 99.8 6.5E-19 2.2E-23 129.3 10.7 122 8-131 129-276 (369)
15 4fuq_A Malonyl COA synthetase; 99.8 7.8E-19 2.7E-23 133.7 11.5 123 8-133 190-313 (503)
16 1t5h_X 4-chlorobenzoyl COA lig 99.8 1.1E-18 3.7E-23 132.9 12.0 117 9-126 189-310 (504)
17 2v7b_A Benzoate-coenzyme A lig 99.8 2.5E-18 8.6E-23 131.5 14.0 121 8-129 219-341 (529)
18 3r44_A Fatty acyl COA syntheta 99.8 1.5E-18 5.1E-23 132.6 11.8 120 8-130 205-325 (517)
19 4gs5_A Acyl-COA synthetase (AM 99.8 5.2E-19 1.8E-23 129.7 8.2 118 7-131 71-190 (358)
20 3ipl_A 2-succinylbenzoate--COA 99.8 5.4E-18 1.9E-22 128.8 13.4 116 8-129 198-314 (501)
21 3qov_A Phenylacetate-coenzyme 99.8 2E-18 6.7E-23 129.3 10.5 117 9-126 125-244 (436)
22 4dg8_A PA1221; ANL superfamily 99.8 7.7E-18 2.6E-22 131.2 14.2 119 8-130 198-319 (620)
23 3t5a_A Long-chain-fatty-acid-- 99.8 2.1E-18 7.3E-23 130.2 8.9 118 13-131 230-360 (480)
24 3g7s_A Long-chain-fatty-acid-- 99.8 5.1E-18 1.7E-22 130.4 10.9 122 8-130 215-345 (549)
25 3l8c_A D-alanine--poly(phospho 99.8 2.4E-17 8.1E-22 125.8 14.0 121 9-130 183-307 (521)
26 2y27_A Phenylacetate-coenzyme 99.7 1.2E-17 4E-22 125.1 11.6 117 8-126 128-248 (437)
27 4gr5_A Non-ribosomal peptide s 99.7 2.1E-17 7.1E-22 127.6 13.2 118 9-130 249-369 (570)
28 3kxw_A Saframycin MX1 syntheta 99.7 4.5E-18 1.5E-22 131.4 8.9 124 8-131 202-338 (590)
29 3rg2_A Enterobactin synthase c 99.7 1.7E-17 5.7E-22 129.2 11.4 122 8-130 219-344 (617)
30 2y4o_A Phenylacetate-coenzyme 99.7 1.8E-17 6E-22 124.4 10.6 117 8-126 130-250 (443)
31 3nyq_A Malonyl-COA ligase; A/B 99.7 3E-18 1E-22 130.6 6.4 123 8-132 190-316 (505)
32 3gqw_A Fatty acid AMP ligase; 99.7 9.8E-17 3.4E-21 123.5 10.6 122 9-130 213-347 (576)
33 3ivr_A Putative long-chain-fat 99.7 1.4E-16 4.8E-21 121.3 10.3 117 8-130 195-312 (509)
34 1amu_A GRSA, gramicidin synthe 99.7 4.1E-16 1.4E-20 120.3 11.1 113 8-130 217-333 (563)
35 2vsq_A Surfactin synthetase su 99.7 6.7E-16 2.3E-20 128.6 11.1 119 8-130 641-763 (1304)
36 3ite_A SIDN siderophore synthe 99.6 1.8E-15 6E-20 116.5 10.3 115 10-130 220-336 (562)
37 3ezx_A MMCP 1, monomethylamine 84.3 7.3 0.00025 26.1 9.5 82 23-107 104-195 (215)
38 3g7s_A Long-chain-fatty-acid-- 65.5 35 0.0012 25.8 8.0 66 9-76 72-139 (549)
39 1v25_A Long-chain-fatty-acid-C 63.0 40 0.0014 25.4 7.9 65 9-75 67-133 (541)
40 3ni2_A 4-coumarate:COA ligase; 59.2 38 0.0013 25.5 7.1 64 9-74 69-134 (536)
41 1uzb_A 1-pyrroline-5-carboxyla 59.0 55 0.0019 24.9 7.9 47 14-60 175-226 (516)
42 3ivr_A Putative long-chain-fat 58.6 46 0.0016 24.8 7.4 64 9-74 51-116 (509)
43 2v7b_A Benzoate-coenzyme A lig 58.6 37 0.0013 25.4 7.0 65 9-75 68-134 (529)
44 1t90_A MMSDH, probable methylm 56.9 61 0.0021 24.4 9.3 75 14-96 143-227 (486)
45 3c5e_A Acyl-coenzyme A synthet 56.8 40 0.0014 25.7 7.0 64 10-75 95-160 (570)
46 3rix_A Luciferase, luciferin 4 56.3 34 0.0012 25.9 6.4 65 9-75 70-136 (550)
47 1amu_A GRSA, gramicidin synthe 53.4 67 0.0023 24.4 7.7 64 9-74 84-149 (563)
48 1uxt_A Glyceraldehyde-3-phosph 52.7 73 0.0025 24.1 9.2 47 14-60 159-210 (501)
49 2d1s_A Luciferase, luciferin 4 52.7 34 0.0012 25.9 5.9 65 9-75 72-138 (548)
50 1ry2_A Acetyl-coenzyme A synth 52.5 56 0.0019 25.5 7.2 61 8-70 133-195 (663)
51 4fuq_A Malonyl COA synthetase; 52.4 68 0.0023 23.9 7.5 60 9-70 48-109 (503)
52 3r44_A Fatty acyl COA syntheta 52.3 65 0.0022 24.1 7.4 62 9-72 63-126 (517)
53 1wnd_A Putative betaine aldehy 52.1 75 0.0026 24.1 7.7 46 14-59 161-211 (495)
54 1t5h_X 4-chlorobenzoyl COA lig 50.5 69 0.0024 23.8 7.3 65 9-75 49-117 (504)
55 4f9i_A Proline dehydrogenase/d 50.5 96 0.0033 26.1 8.4 84 14-108 668-762 (1026)
56 3qan_A 1-pyrroline-5-carboxyla 48.8 86 0.003 24.0 7.6 46 14-59 174-224 (538)
57 4e4g_A Methylmalonate-semialde 48.3 89 0.003 23.8 9.2 66 14-79 164-239 (521)
58 2ve5_A BADH, betaine aldehyde 47.6 88 0.003 23.6 8.5 47 14-60 144-195 (490)
59 1bxs_A Aldehyde dehydrogenase; 46.6 93 0.0032 23.6 8.5 47 14-60 161-212 (501)
60 1pg4_A Acetyl-COA synthetase; 46.4 71 0.0024 24.9 6.9 59 9-69 127-187 (652)
61 1o04_A Aldehyde dehydrogenase, 45.5 97 0.0033 23.5 8.6 47 14-60 160-211 (500)
62 2d4e_A 5-carboxymethyl-2-hydro 45.4 98 0.0034 23.5 8.1 47 14-60 164-215 (515)
63 4gr5_A Non-ribosomal peptide s 45.1 95 0.0032 23.5 7.4 60 9-70 120-181 (570)
64 3k2w_A Betaine-aldehyde dehydr 43.9 1E+02 0.0035 23.3 8.8 47 14-60 150-201 (497)
65 3b4w_A Aldehyde dehydrogenase; 43.8 1E+02 0.0035 23.3 9.4 47 14-60 148-199 (495)
66 2o2p_A Formyltetrahydrofolate 43.1 1.1E+02 0.0037 23.3 9.3 47 14-60 180-231 (517)
67 3ju8_A Succinylglutamic semial 41.4 1.1E+02 0.0038 23.0 8.1 85 14-109 141-235 (490)
68 3ifg_A Succinate-semialdehyde 40.8 1.1E+02 0.0039 23.0 7.5 85 14-109 150-245 (484)
69 4e3x_A Delta-1-pyrroline-5-car 40.7 1.2E+02 0.0043 23.3 7.9 47 14-60 202-252 (563)
70 3r31_A BADH, betaine aldehyde 40.2 1.2E+02 0.0042 23.1 9.6 65 14-78 152-226 (517)
71 3l8c_A D-alanine--poly(phospho 40.1 84 0.0029 23.4 6.4 59 9-69 49-109 (521)
72 2w8n_A Succinate-semialdehyde 39.3 1.2E+02 0.0042 22.8 7.3 47 14-60 148-199 (487)
73 3etc_A AMP-binding protein; ad 39.2 1.1E+02 0.0036 23.5 6.8 59 9-69 106-166 (580)
74 3ed6_A Betaine aldehyde dehydr 38.9 1.3E+02 0.0044 23.0 8.0 47 14-60 172-223 (520)
75 3qbx_A Anhydro-N-acetylmuramic 38.8 33 0.0011 25.1 3.7 29 89-117 285-313 (371)
76 3o83_A Peptide arylation enzym 38.5 1.1E+02 0.0037 23.0 6.8 59 9-69 75-135 (544)
77 1mdb_A 2,3-dihydroxybenzoate-A 37.5 1.3E+02 0.0044 22.6 7.0 59 9-69 70-130 (539)
78 3rh9_A Succinate-semialdehyde 37.0 1.4E+02 0.0047 22.7 7.4 66 14-79 149-225 (506)
79 3ipl_A 2-succinylbenzoate--COA 36.2 1.3E+02 0.0044 22.2 7.2 55 13-69 48-103 (501)
80 3i44_A Aldehyde dehydrogenase; 35.8 1.4E+02 0.0048 22.6 8.3 47 14-60 163-214 (497)
81 2imp_A Lactaldehyde dehydrogen 35.7 1.4E+02 0.0047 22.4 8.6 47 14-60 144-195 (479)
82 3ros_A NAD-dependent aldehyde 35.1 1.4E+02 0.0049 22.4 8.3 87 14-108 125-222 (484)
83 3cqy_A Anhydro-N-acetylmuramic 34.5 36 0.0012 24.9 3.3 27 90-116 292-318 (370)
84 3fce_A D-alanine--poly(phospho 34.1 1.2E+02 0.0041 22.5 6.3 57 10-68 47-105 (512)
85 3ek1_A Aldehyde dehydrogenase; 33.2 1.6E+02 0.0054 22.4 8.5 66 14-79 170-246 (504)
86 3etf_A Putative succinate-semi 33.2 1.5E+02 0.0051 22.1 8.6 66 14-79 128-203 (462)
87 3u4j_A NAD-dependent aldehyde 32.9 1.6E+02 0.0056 22.4 8.5 47 14-60 163-214 (528)
88 3iwj_A Putative aminoaldehyde 32.7 1.6E+02 0.0055 22.3 8.6 47 14-60 153-204 (503)
89 1y80_A Predicted cobalamin bin 32.4 1E+02 0.0035 20.0 7.8 79 23-104 100-186 (210)
90 1a4s_A ALDH, betaine aldehyde 31.8 1.7E+02 0.0057 22.2 9.6 47 14-60 157-208 (503)
91 3tsy_A Fusion protein 4-coumar 31.0 1.6E+02 0.0056 24.1 7.0 61 9-71 108-170 (979)
92 2i2x_B MTAC, methyltransferase 30.2 1E+02 0.0035 20.9 5.0 78 23-104 135-219 (258)
93 3kxw_A Saframycin MX1 syntheta 29.5 1.8E+02 0.0062 21.9 7.9 66 9-76 60-130 (590)
94 3jz4_A Succinate-semialdehyde 28.5 1.9E+02 0.0064 21.7 8.9 75 14-96 147-232 (481)
95 3gqw_A Fatty acid AMP ligase; 28.3 1.9E+02 0.0064 21.7 7.7 65 9-75 69-142 (576)
96 3t5a_A Long-chain-fatty-acid-- 27.4 1.3E+02 0.0043 22.0 5.4 66 10-77 79-148 (480)
97 2j6l_A Aldehyde dehydrogenase 26.5 2.1E+02 0.0072 21.6 9.0 33 14-46 159-192 (500)
98 4eql_A 4-substituted benzoates 25.8 26 0.0009 27.3 1.4 35 89-126 302-337 (581)
99 3haz_A Proline dehydrogenase; 25.8 3E+02 0.01 23.1 8.4 47 14-60 651-702 (1001)
100 3rg2_A Enterobactin synthase c 25.4 2.3E+02 0.0078 21.7 6.9 58 10-69 71-130 (617)
101 3e7w_A D-alanine--poly(phospho 24.7 1.7E+02 0.0059 21.7 5.8 56 10-67 48-105 (511)
102 3ite_A SIDN siderophore synthe 24.0 2.3E+02 0.0079 21.3 6.9 58 10-69 76-134 (562)
103 4f3x_A Putative aldehyde dehyd 23.4 2.4E+02 0.0083 21.3 8.3 46 14-59 163-213 (498)
104 2wme_A BADH, betaine aldehyde 22.3 2.6E+02 0.0087 21.1 8.5 47 14-60 144-195 (490)
105 1zxx_A 6-phosphofructokinase; 21.8 74 0.0025 22.7 3.0 43 16-59 163-207 (319)
106 1euh_A NADP dependent non phos 21.8 2.5E+02 0.0087 20.9 9.6 86 14-110 145-241 (475)
107 3nyq_A Malonyl-COA ligase; A/B 21.4 2E+02 0.0069 21.3 5.6 54 14-69 69-123 (505)
108 1pfk_A Phosphofructokinase; tr 21.4 76 0.0026 22.7 3.0 40 19-59 167-208 (320)
109 2ioj_A Hypothetical protein AF 20.9 1.4E+02 0.0048 17.9 3.9 34 91-126 78-112 (139)
110 4dg8_A PA1221; ANL superfamily 20.7 2.9E+02 0.01 21.2 7.4 56 10-67 73-130 (620)
111 3bul_A Methionine synthase; tr 20.3 3.1E+02 0.011 21.4 8.1 78 23-104 110-194 (579)
No 1
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.85 E-value=2.6e-20 Score=143.23 Aligned_cols=122 Identities=30% Similarity=0.399 Sum_probs=108.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++++ |++++.+|++|++|+...++.++ .|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus 231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 309 (548)
T 2d1s_A 231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS 309 (548)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc
Confidence 45566 99999999999999855567777 99999999989999999999999999999999999999987765566789
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
++|.+.+||+++++++.+++++.+|+.++++.||+||++..++.
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 353 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII 353 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence 99999999999999999999999977889999999999865543
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.85 E-value=3.9e-20 Score=142.20 Aligned_cols=123 Identities=32% Similarity=0.454 Sum_probs=110.6
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS 88 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 88 (149)
++.+ |++++.+|++|++|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.....++++
T Consensus 230 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~ 308 (550)
T 3rix_A 230 QIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSN 308 (550)
T ss_dssp CCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTT
T ss_pred cCCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCccc
Confidence 4555 999999999999998 67788999999999999999999999999999999999999999999987766778999
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY 133 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 133 (149)
+|.+.+||+++++++.+++++.++...+++.||+||++..++...
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~ 353 (550)
T 3rix_A 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP 353 (550)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC
T ss_pred ccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC
Confidence 999999999999999999999998445999999999986655433
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.85 E-value=2e-20 Score=143.40 Aligned_cols=121 Identities=37% Similarity=0.535 Sum_probs=111.3
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.+ |++++.+|++|++|+...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus 218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 297 (536)
T 3ni2_A 218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS 297 (536)
T ss_dssp SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCT
T ss_pred ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCc
Confidence 34555 99999999999999977788999999999999999999999999999999999999999999998776777899
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
++|.+.+||+++++++.+++++.+|++++++.||+||++.++
T Consensus 298 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~ 339 (536)
T 3ni2_A 298 SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVL 339 (536)
T ss_dssp TCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhh
Confidence 999999999999999999999999779999999999998544
No 4
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.82 E-value=1.4e-19 Score=138.00 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=110.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++.+|++|+.++ ..++.++..|+++++.++ ++++.+++.++++++|.+.++|+++..++.......
T Consensus 179 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 257 (512)
T 3fce_A 179 DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE 257 (512)
T ss_dssp HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST
T ss_pred hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc
Confidence 356666 999999999999998 678999999999999985 689999999999999999999999999988776667
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.+||+++++++.+++.+.++++++++.||+||++..++
T Consensus 258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 304 (512)
T 3fce_A 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304 (512)
T ss_dssp TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhee
Confidence 78899999999999999999999999997799999999999986544
No 5
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.81 E-value=2.8e-19 Score=140.02 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=108.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..|++|+.|+.+.++.++..|+++++.++ ++++.+++.++++++|++.++|++++.+++...
T Consensus 292 ~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 371 (652)
T 1pg4_A 292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371 (652)
T ss_dssp HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG
T ss_pred hcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc
Confidence 456777 9999999999999987778899999999999874 589999999999999999999999999987653
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC 130 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~ 130 (149)
....+++++|.+.+||+++++++++++++.++. +++++.||+||++...+
T Consensus 372 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 423 (652)
T 1pg4_A 372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423 (652)
T ss_dssp TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence 234578999999999999999999999998863 78999999999985544
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.81 E-value=1.5e-19 Score=138.72 Aligned_cols=120 Identities=24% Similarity=0.285 Sum_probs=107.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |++++.+|++|.+++.. .++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.......+
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 296 (539)
T 1mdb_A 217 VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD 296 (539)
T ss_dssp HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC
T ss_pred hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC
Confidence 345666 99999999999999854 6889999999999999899999999999999999999999999998765445567
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 128 (149)
++++|.+.+||+++++++.+++++.++ +++++.||+||++..
T Consensus 297 l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~ 338 (539)
T 1mdb_A 297 LSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVN 338 (539)
T ss_dssp CTTCCEEEEESSCCCHHHHTTHHHHTC-SEEEEEEECTTSCEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHHHhC-CcEEEEEcCCCCccc
Confidence 899999999999999999999999887 999999999997643
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.81 E-value=2.3e-19 Score=136.74 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=110.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++.+|++|+.++ ..++.++..|+++++.+. ++++.+++.++++++|.+.++|+++..+++.+....
T Consensus 178 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 256 (511)
T 3e7w_A 178 DFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ 256 (511)
T ss_dssp HSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST
T ss_pred hcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc
Confidence 345666 999999999999998 678999999999999875 689999999999999999999999999998877667
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.+||+++++++.+++++.++++++++.||+||++..++
T Consensus 257 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 303 (511)
T 3e7w_A 257 DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT 303 (511)
T ss_dssp TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence 77899999999999999999999999997799999999999985544
No 8
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.80 E-value=6.4e-19 Score=138.23 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=107.8
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-- 80 (149)
.+++++ |++++..|++|+.|..+.++.++..|+++++.++ ++++.+++.++++++|+++++|++++.+.+...
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~ 377 (663)
T 1ry2_A 298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY 377 (663)
T ss_dssp HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS
T ss_pred hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc
Confidence 456667 9999999999999987778899999999999864 589999999999999999999999999987654
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC--CCcEEeeecccccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~ 130 (149)
....+++++|.+++||+++++++++++++.++ ++++++.||+||++...+
T Consensus 378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 429 (663)
T 1ry2_A 378 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429 (663)
T ss_dssp SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeee
Confidence 23457899999999999999999999999886 378999999999985443
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.80 E-value=8.7e-19 Score=135.61 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=105.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc--CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
+.++.+ +++++..|++|..+.+..++.++..|+++++. ++++++.+++.++++++|+++++|++++.+.+.. ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~ 338 (580)
T 3etc_A 260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHY 338 (580)
T ss_dssp TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---
T ss_pred hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccC
Confidence 345666 89999999999999866678899999999987 4789999999999999999999999999998763 3556
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND 132 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 132 (149)
+++++|.+.+||+++++++.+++++.++ +++++.||+||++..++..
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECC
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC-CeEecccccccccceeecC
Confidence 7899999999999999999999999887 8999999999998655543
No 10
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.80 E-value=9e-19 Score=135.25 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=107.4
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
.+++++ |++++..|++|+.++...++.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+++.. ....
T Consensus 241 ~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~ 319 (570)
T 3c5e_A 241 WTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSY 319 (570)
T ss_dssp TTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTC
T ss_pred hcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccc
Confidence 345666 999999999999998657889999999999986 689999999999999999999999999998763 3445
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
+++++|.+++||+++++++.+++++.++ +++++.||+||++..++.
T Consensus 320 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 320 KFPHLQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTETGLTCMV 365 (570)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEEC
T ss_pred ccccceEEEEcCCcCCHHHHHHHHHHhC-Cchhhccchhhcccceec
Confidence 6889999999999999999999999886 899999999999865543
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.79 E-value=2.5e-19 Score=137.56 Aligned_cols=122 Identities=22% Similarity=0.324 Sum_probs=108.7
Q ss_pred ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |++++.+|++|.+++.. .++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.......+
T Consensus 226 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 305 (544)
T 3o83_A 226 ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ 305 (544)
T ss_dssp HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH
T ss_pred HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc
Confidence 456666 99999999999999854 5789999999999999999999999999999999999999999998876555567
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||+++++++.+++++.++ +++++.||+||++....
T Consensus 306 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~ 349 (544)
T 3o83_A 306 IQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYT 349 (544)
T ss_dssp HTTCCEEEEESSCCCHHHHTHHHHHHC-SEEEEEEECTTSCEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEeeeccccccceee
Confidence 889999999999999999999999886 99999999999875443
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.79 E-value=6.6e-19 Score=135.18 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=103.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
+++++ |++++.+|++|++++ ...+.++..|+++++.+ .++++.+++.++++++|++.++|+++..+++.......++
T Consensus 214 ~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 292 (541)
T 1v25_A 214 TALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 292 (541)
T ss_dssp TCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCC
T ss_pred ccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcc
Confidence 35556 999999999999998 56788999999999986 4799999999999999999999999999987544344568
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++ +.++ +++++.||+||++..++
T Consensus 293 ~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~~~~YG~TE~~~~~~ 334 (541)
T 1v25_A 293 KTLRRLVVGGSAAPRSLIARF-ERMG-VEVRQGYGLTETSPVVV 334 (541)
T ss_dssp SSCCEEEECSSCCCHHHHHHH-HHTT-CEEEEEEECGGGSSEEE
T ss_pred hhccEEEECCCCCCHHHHHHH-HHhC-Cceeeccccccccccee
Confidence 899999999999999999999 6665 89999999999985544
No 13
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.79 E-value=6e-19 Score=143.37 Aligned_cols=122 Identities=38% Similarity=0.591 Sum_probs=111.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
+++.+ |++++.+|++|++++...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus 265 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 344 (979)
T 3tsy_A 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS 344 (979)
T ss_dssp SCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCT
T ss_pred ccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCcc
Confidence 44555 99999999999999977788999999999999999999999999999999999999999999988766667889
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++++.+|++++++.||+||++.+++
T Consensus 345 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 387 (979)
T 3tsy_A 345 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLA 387 (979)
T ss_dssp TCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHH
Confidence 9999999999999999999999997799999999999985543
No 14
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.79 E-value=6.5e-19 Score=129.34 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=102.6
Q ss_pred ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHH-----------------------HHHHHHHhcCc
Q 032003 8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHRV 62 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~-----------------------~~~~~l~~~~~ 62 (149)
..++++ |++++..|+ +|+.|+ ...+.++..|+ +++..+++|. .+++.++++++
T Consensus 129 ~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 206 (369)
T 3hgu_A 129 HRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI 206 (369)
T ss_dssp TSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred hhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 345566 899999999 999998 55566688898 6666677887 88889999999
Q ss_pred eEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHH-HhCCCCcEEeeeccccccccccc
Q 032003 63 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 63 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
|.+.++|+++..+++.+.....+++++|.+.+||+++++++.++++ +.+|++++++.||+||+++++..
T Consensus 207 t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~ 276 (369)
T 3hgu_A 207 RFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRS 276 (369)
T ss_dssp EEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE
T ss_pred CEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceec
Confidence 9999999999999876433334567899999999999999999999 89966999999999999865543
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.79 E-value=7.8e-19 Score=133.73 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=109.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |++++.+|++|.+|+....+.++..|+++++.++++++.+++.++ ++|.+.++|+++..+++.+.....++
T Consensus 190 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~ 267 (503)
T 4fuq_A 190 YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETT 267 (503)
T ss_dssp HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTT
T ss_pred HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccch
Confidence 356666 999999999999997566778999999999999999999999998 89999999999999999877667778
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY 133 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 133 (149)
+++|.+.+||+++++++.+++.+.++ .++++.||+||++..+..+.
T Consensus 268 ~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~ 313 (503)
T 4fuq_A 268 GHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETNMNTSNPY 313 (503)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEETTTEECBCCCS
T ss_pred hhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEcccccCcccccCC
Confidence 89999999999999999999999887 89999999999987665443
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.79 E-value=1.1e-18 Score=132.88 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=104.6
Q ss_pred cCC--CC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCc
Q 032003 9 AGE--LD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK 83 (149)
Q Consensus 9 ~~~--~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~ 83 (149)
+++ .+ |++++.+|++|+.|+...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+. ...
T Consensus 189 ~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 268 (504)
T 1t5h_X 189 VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS 268 (504)
T ss_dssp TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCC
T ss_pred hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccc
Confidence 455 44 9999999999999986678899999999999999999999999999999999999999999987542 234
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
.+++++|.+.+||+++++++.+++++.+| .++++.||+||++
T Consensus 269 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 269 LKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAM 310 (504)
T ss_dssp CCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEEEEEEEETTTE
T ss_pred ccCccccEEEEcCCcCCHHHHHHHHHhcC-cceeeeecccccc
Confidence 56889999999999999999999999997 8899999999994
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.79 E-value=2.5e-18 Score=131.49 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=104.4
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++.+ |++++.+|++|+.|+...++.++..|+++++. +.++++.+++.++++++|++.++|+++..+++.+......
T Consensus 219 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 298 (529)
T 2v7b_A 219 ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA 298 (529)
T ss_dssp CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG
T ss_pred ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc
Confidence 345666 99999999999999866677899999999988 5789999999999999999999999999998865443331
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
..++|.+.+||+++++++.+++++.++ +++++.||+||++.+.
T Consensus 299 ~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~ 341 (529)
T 2v7b_A 299 DVAIRICTSAGEALPREIGERFTAHFG-CEILDGIGSTEMLHIF 341 (529)
T ss_dssp GCCCCEEEECSSCCCHHHHHHHHHHHS-CCEEEEEECTTTSSEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhC-CceeeeEchhhcCcee
Confidence 237999999999999999999999886 8999999999996443
No 18
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.78 E-value=1.5e-18 Score=132.56 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=104.6
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |++++.+|++|++|+...+ .++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.....++
T Consensus 205 ~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 283 (517)
T 3r44_A 205 TIDVRYRDRLLLPLPMFHVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDA 283 (517)
T ss_dssp HSCCCTTCEEEECSCTTSHHHHHHHH-HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCC
T ss_pred hcCCCCCCEEEEeCchHHHHHHHHHH-HHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCC
Confidence 346666 9999999999999994444 44449999999999999999999999999999999999999988766556678
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+.+||+++++++.+++++. ++++++.||+||++..++
T Consensus 284 ~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~ 325 (517)
T 3r44_A 284 PDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGT 325 (517)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEE
T ss_pred CcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccccccccee
Confidence 899999999999999999999887 489999999999975443
No 19
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.78 E-value=5.2e-19 Score=129.68 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=100.1
Q ss_pred cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
..+++++ |++++.+|++|++|+ ..++.++..|+++++.++ .+ .++.++++++|++.++|+++..+++.+. ...
T Consensus 71 ~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~ 145 (358)
T 4gs5_A 71 KALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSA-TSG 145 (358)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGG
T ss_pred HHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhcccc-ccc
Confidence 3456777 999999999999998 667888999999988863 33 3567899999999999999999998764 445
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 131 (149)
+++++|.+.+||+++++++.+++++. + +++++.||+||++..++.
T Consensus 146 ~l~~lr~v~~gG~~l~~~~~~~~~~~-~-~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 146 QVDRLGKVLLGGAPVNHALAMQISDL-A-MPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp GGGGGCSEEECSSCCCHHHHHHHHTC-S-SCEEEEEECGGGSSEEEE
T ss_pred cCCcceEEEEcccCCCchheeccccc-C-ceEEeccccccccceeec
Confidence 78999999999999999999999874 4 899999999999865543
No 20
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.77 E-value=5.4e-18 Score=128.82 Aligned_cols=116 Identities=24% Similarity=0.374 Sum_probs=102.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |++++.+|++|++|+ ..++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++......
T Consensus 198 ~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--- 273 (501)
T 3ipl_A 198 SLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP--- 273 (501)
T ss_dssp HTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---
T ss_pred hhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---
Confidence 356666 999999999999999 558899999999999999999999999999999999999999999987654322
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~ 129 (149)
.++|.+.+||+++++++.+++++. + +++++.||+||++...
T Consensus 274 ~~lr~i~~gG~~l~~~~~~~~~~~-~-~~~~~~YG~TE~~~~~ 314 (501)
T 3ipl_A 274 YNLQKILLGGAKLSATMIETALQY-N-LPIYNSFGMTETCSQF 314 (501)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT-T-CCEEEEEEEGGGTEEE
T ss_pred CcccEEEEeCCCCCHHHHHHHHHh-C-CCEeccccccccccce
Confidence 279999999999999999999874 4 8999999999987543
No 21
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.77 E-value=2e-18 Score=129.30 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=102.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~ 85 (149)
.++++ |+++...|++|..+....++.++..|+++++.+..+++.+++.++++++|++.++|+++..+++....... +
T Consensus 125 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 204 (436)
T 3qov_A 125 VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR 204 (436)
T ss_dssp TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence 36666 99999999877666656778899999999999888999999999999999999999999999875433332 3
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
++++|.+++||+++++++.+++++.++ +++++.||+||++
T Consensus 205 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~ 244 (436)
T 3qov_A 205 ETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSFGMTEMN 244 (436)
T ss_dssp SSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEEGGGT
T ss_pred cCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecCcchhhc
Confidence 788999999999999999999999986 9999999999994
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.77 E-value=7.7e-18 Score=131.25 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=105.1
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
.+++.+ |++++..|++|+.++ +.++.++..|+++++.+ .++++.+.+.++++++|.+.++|+++..+++.. ..
T Consensus 198 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~ 273 (620)
T 4dg8_A 198 FLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PD 273 (620)
T ss_dssp GGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GG
T ss_pred hhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hh
Confidence 456666 999999999999998 77899999999999975 579999999999999999999999999998642 34
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++++|.+.+||++++++..+++.+.+++++++|.||+||++..++
T Consensus 274 ~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 319 (620)
T 4dg8_A 274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTC 319 (620)
T ss_dssp GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheE
Confidence 6789999999999999999999888887799999999999985543
No 23
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.76 E-value=2.1e-18 Score=130.18 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=102.0
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhC----CCCCcC
Q 032003 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH----GLVKKF 84 (149)
Q Consensus 13 ~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~----~~~~~~ 84 (149)
.|++++.+|++|++|+...++.++..|+++++.++. +++.+++.++++++| +..+|+++..++.. +.....
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 489999999999999877889999999999998753 899999999999999 78888888887653 333456
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~ 131 (149)
+++++|.+.+||+++++++.+++++.++ +.++.+.||+||++..++.
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 360 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVAT 360 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEE
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEee
Confidence 7899999999999999999999999883 3579999999999866554
No 24
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.75 E-value=5.1e-18 Score=130.42 Aligned_cols=122 Identities=24% Similarity=0.327 Sum_probs=106.3
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc--C
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--F 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~ 84 (149)
.+++++ |++++.+|++|++++. .++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++...... .
T Consensus 215 ~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 293 (549)
T 3g7s_A 215 ATGLSHMDTIVGCMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY 293 (549)
T ss_dssp HHCCCTTCEEECCSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCC
T ss_pred HcCCCCCCEEEEeCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccC
Confidence 346666 9999999999999984 47889999999999999999999999999999999999999999987543333 5
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHh----CC--CCcEEeeecccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKN----VP--SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~----~~--~~~i~~~YG~tE~~~~~~ 130 (149)
+++++|.+.+||+++++++.+++.+. ++ +.++.+.||+||++..++
T Consensus 294 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 345 (549)
T 3g7s_A 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345 (549)
T ss_dssp CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence 68899999999999999999999887 54 378999999999986554
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.75 E-value=2.4e-17 Score=125.84 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=107.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (149)
++..+ +++++..|++|..++ ..++.++..|+++++.++ .+++.+++.++++++|.+.++|+++..+.........
T Consensus 183 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 261 (521)
T 3l8c_A 183 FDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA 261 (521)
T ss_dssp TCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred cCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence 44555 899999999999998 678899999999999875 3899999999999999999999999999887766667
Q ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++++|.+.+||+++++++.+++.+.++++++++.||+||++..++
T Consensus 262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 307 (521)
T 3l8c_A 262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS 307 (521)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhc
Confidence 7899999999999999999999999997799999999999986543
No 26
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.75 E-value=1.2e-17 Score=125.12 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=100.5
Q ss_pred ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.+++++ |+++...|+ +|..++ ...+.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.......+
T Consensus 128 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~ 206 (437)
T 2y27_A 128 AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD 206 (437)
T ss_dssp HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC
Confidence 356666 999999998 788887 56788999999999888889999999999999999999999999998653222222
Q ss_pred --CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 86 --LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 86 --l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
++++|.+.+||+++++++.+++++.++ +++++.||+||++
T Consensus 207 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~ 248 (437)
T 2y27_A 207 PVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIYGLSEVM 248 (437)
T ss_dssp GGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEETTTT
T ss_pred cccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecCCchhhc
Confidence 478999999999999999999998886 9999999999973
No 27
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.75 E-value=2.1e-17 Score=127.56 Aligned_cols=118 Identities=16% Similarity=0.063 Sum_probs=104.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 85 (149)
.++++ |++++.+|++|..+. ..++.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+++... .+
T Consensus 249 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~ 324 (570)
T 4gr5_A 249 AGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EA 324 (570)
T ss_dssp SCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GG
T ss_pred cCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hh
Confidence 45666 999999999998776 67889999999999986 4789999999999999999999999999987532 35
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++++|.+.+||++++++..+++.+.++++++++.||+||++..++
T Consensus 325 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence 789999999999999999999999987799999999999975544
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.74 E-value=4.5e-18 Score=131.41 Aligned_cols=124 Identities=20% Similarity=0.143 Sum_probs=106.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhC---C
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH---G 79 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~---~ 79 (149)
.+++++ |++++.+|++|+.|+...++.++..|+++++.+++ +++.+++.++++++|.+.++|+++..+++. .
T Consensus 202 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 281 (590)
T 3kxw_A 202 SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE 281 (590)
T ss_dssp HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence 356666 99999999999999955588999999999999764 899999999999999999999999988764 2
Q ss_pred CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccccc
Q 032003 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESCN 131 (149)
Q Consensus 80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~ 131 (149)
.....+++++|.+.+||+++++++.+++++.++ +.++++.||+||++..++.
T Consensus 282 ~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~ 338 (590)
T 3kxw_A 282 KKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTG 338 (590)
T ss_dssp GGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred hccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeec
Confidence 234567899999999999999999999998873 3579999999999866553
No 29
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.74 E-value=1.7e-17 Score=129.20 Aligned_cols=122 Identities=22% Similarity=0.317 Sum_probs=105.8
Q ss_pred ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--Cc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~ 83 (149)
.+++++ |++++.+|++|.+++.. .++.++..|+++++.++.++..+++.++++++|++.++|+++..+++.... ..
T Consensus 219 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 298 (617)
T 3rg2_A 219 ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR 298 (617)
T ss_dssp HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT
T ss_pred hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc
Confidence 346666 99999999999998843 588999999999999889999999999999999999999999998764322 22
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.+||+++++++.+++.+.++ ++++|.||+||++..++
T Consensus 299 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~ 344 (617)
T 3rg2_A 299 AQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYT 344 (617)
T ss_dssp TTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEEEEETTEEEEEC
T ss_pred ccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEEeccCcceeecc
Confidence 36889999999999999999999999987 99999999999875444
No 30
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.73 E-value=1.8e-17 Score=124.35 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=100.3
Q ss_pred ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC-
Q 032003 8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF- 84 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~- 84 (149)
.+++++ |+++...|+ +|..++ ...+.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.......
T Consensus 130 ~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~ 208 (443)
T 2y4o_A 130 AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD 208 (443)
T ss_dssp HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC
Confidence 356666 999999998 577776 5678899999999998888999999999999999999999999999865322222
Q ss_pred -CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003 85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126 (149)
Q Consensus 85 -~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~ 126 (149)
+++++|.+++||+++++++.+++++.++ +++++.||+||++
T Consensus 209 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~ 250 (443)
T 2y4o_A 209 PAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIYGLSEVM 250 (443)
T ss_dssp GGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEEEETTTT
T ss_pred cccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEeccCchhhc
Confidence 2478999999999999999999999886 9999999999973
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.73 E-value=3e-18 Score=130.57 Aligned_cols=123 Identities=24% Similarity=0.267 Sum_probs=105.8
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC---Cc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV---KK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---~~ 83 (149)
.+++++ |++++.+|++|..|+...++.++..|+++++.++++++.+++.+ ++++|++.++|+++..+++.... ..
T Consensus 190 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 268 (505)
T 3nyq_A 190 AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELA 268 (505)
T ss_dssp HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHH
T ss_pred HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhh
Confidence 346666 99999999999999877789999999999999999999999999 88999999999999999873211 12
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND 132 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 132 (149)
.+++++|.+.+||+++++++.+++++.++ .+++|.||+||++..++..
T Consensus 269 ~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 269 KALAGARLLVSGSAALPVHDHERIAAATG-RRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp HHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECC
T ss_pred cccccceEEEECCCCCCHHHHHHHHHhcC-CeeecccchhhcccccccC
Confidence 34678999999999999999999998886 8999999999998665543
No 32
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.70 E-value=9.8e-17 Score=123.51 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=104.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC---
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--- 80 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--- 80 (149)
+++++ |++++.+|++|+.|+...++.++..|+++++.+. ++++.+++.++++++|++.++|+++..+.+...
T Consensus 213 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 292 (576)
T 3gqw_A 213 IKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD 292 (576)
T ss_dssp SCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH
T ss_pred cCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc
Confidence 56666 9999999999999996667788999999998863 588999999999999999999999988765432
Q ss_pred CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeecccccccccc
Q 032003 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESC 130 (149)
Q Consensus 81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~ 130 (149)
....+++++|.+.+||+++++++.+++.+.++ +.++++.||+||++..++
T Consensus 293 ~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 347 (576)
T 3gqw_A 293 LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVS 347 (576)
T ss_dssp HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEE
T ss_pred cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceee
Confidence 23456889999999999999999999998874 478999999999986554
No 33
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.69 E-value=1.4e-16 Score=121.33 Aligned_cols=117 Identities=29% Similarity=0.328 Sum_probs=97.5
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (149)
.+++++ |++++.+|++|++|+.. .+..+..|++.++..+++++.+++.++++++|.+.++|+++..+++.. ...++
T Consensus 195 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l 271 (509)
T 3ivr_A 195 AWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQL 271 (509)
T ss_dssp HTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGG
T ss_pred hhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccch
Confidence 456666 99999999999999944 445455555555555889999999999999999999999999998865 34568
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
+++|.+..+|++ +..+++.+.++++++++.||+||++..++
T Consensus 272 ~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 312 (509)
T 3ivr_A 272 ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST 312 (509)
T ss_dssp TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEE
T ss_pred hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccc
Confidence 899999999987 88889999997799999999999986554
No 34
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.67 E-value=4.1e-16 Score=120.29 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=98.2
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |++++..|++|..++ +.++.++..|+++++.++ .+++.+++.++++++|++.++|+++..+..
T Consensus 217 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------ 289 (563)
T 1amu_A 217 SLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ 289 (563)
T ss_dssp TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------
T ss_pred hcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------
Confidence 356666 999999999999998 678899999999999875 689999999999999999999999876643
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
.+++++|.+.+||+++++++.+++++. +++++.||+||++..++
T Consensus 290 ~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~ 333 (563)
T 1amu_A 290 ERILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICAT 333 (563)
T ss_dssp TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSE
T ss_pred cccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhhe
Confidence 246789999999999999999998764 78999999999986544
No 35
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.65 E-value=6.7e-16 Score=128.64 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=104.0
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++++ |+++...|++|+.+. +.++.++..|+++++.+. .+++.+.+.++++++|++.++|+++..+.+.. .
T Consensus 641 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~ 716 (1304)
T 2vsq_A 641 YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---E 716 (1304)
T ss_dssp SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---S
T ss_pred hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---h
Confidence 345566 999999999999998 789999999999999873 68999999999999999999999999997642 2
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
..++++|.+++||+++++++.+++.+.+++.+++|.||+||++..++
T Consensus 717 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 763 (1304)
T 2vsq_A 717 DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT 763 (1304)
T ss_dssp HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence 24678999999999999999999998887688999999999986544
No 36
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.63 E-value=1.8e-15 Score=116.51 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=98.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC-CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (149)
.+.. +++++..|++|..++ ..++.++..|+++++.++. .++.+.+.++++++|++.++|+++..+... ..+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~ 294 (562)
T 3ite_A 220 ELGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAP 294 (562)
T ss_dssp GCTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGST
T ss_pred ccCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccC
Confidence 3445 899999999999987 6788999999999998754 367889999999999999999999887543 34688
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130 (149)
Q Consensus 88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 130 (149)
++|.+.+||+++++++.+++++.++ +++++.||+||++..++
T Consensus 295 ~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~ 336 (562)
T 3ite_A 295 HLVYLGVGGEKMTPRTQQIWSSSDR-VALVNVYGPTEVTIGCS 336 (562)
T ss_dssp TCCEEEEESSCCCHHHHHHHTTCSS-CEEEEEECCGGGCSCSE
T ss_pred ceEEEEEecCCCCHHHHHHHhhCCC-cEEEEeeccchheeeee
Confidence 9999999999999999999988765 89999999999986544
No 37
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=84.28 E-value=7.3 Score=26.07 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEe------cHHH--HHHHHhCCCCCcCCC-CCceEE
Q 032003 23 FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWV------VPPL--ILALAKHGLVKKFDL-SSLKLV 92 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~------~P~~--~~~l~~~~~~~~~~l-~~lr~~ 92 (149)
.|.-|.......--.+|-.++-. ....++.+.+.++++++..+.. +++. +.++.+.- +...+ ..+ .+
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l--~~~~~~~~v-~v 180 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL--NEEKLRDSV-KC 180 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH--HHTTCGGGS-EE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH--HHcCCCCCC-EE
Confidence 68888855544555677777665 4568999999999999987666 2221 12221111 11112 134 36
Q ss_pred EEecCCCCHHHHHHH
Q 032003 93 GSGAAPLGKELMEEC 107 (149)
Q Consensus 93 ~~gg~~~~~~~~~~~ 107 (149)
+.||.+++++..+++
T Consensus 181 ~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 181 MFGGAPVSDKWIEEI 195 (215)
T ss_dssp EEESSSCCHHHHHHH
T ss_pred EEECCCCCHHHHHHh
Confidence 789999998765443
No 38
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=65.48 E-value=35 Score=25.77 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=50.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
.|..+ |++...++-.... + ..+++.+..|+..+..+ ....+++...+++.++..++..+.....+.
T Consensus 72 ~Gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 72 KGVRKGEHVGVCIPNSIDY-V-MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCTTCEEEEECCSSHHH-H-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred cCCCCCCEEEEECCCCHHH-H-HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 36666 8888777744333 3 56789999999999886 578899999999999999998876665543
No 39
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.04 E-value=40 Score=25.42 Aligned_cols=65 Identities=8% Similarity=-0.078 Sum_probs=49.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...++-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++..+.....+
T Consensus 67 ~Gv~~gd~V~i~~~n~-~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 67 LGVGVGDRVATLGFNH-FRHL-EAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTCCTTCEEEEECCSS-HHHH-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCCCCCCEEEEEcCCc-HHHH-HHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 46666 8887777743 3333 56789999999999885 56889999999999999999887665444
No 40
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=59.23 E-value=38 Score=25.51 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=48.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
.|..+ |++...+|-.... + ..+++.+..|+..+..+ ...++++...+++.++..++..+.....
T Consensus 69 ~Gv~~gd~V~i~~~~~~~~-~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 69 IGIQQGDVIMLFLPSSPEF-V-LAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TTCCTTCEEEEECCSSHHH-H-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred cCCCCCCEEEEEcCCcHHH-H-HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 46666 8887777744333 3 56789999999998875 5789999999999999999887654443
No 41
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=58.95 E-value=55 Score=24.90 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=32.6
Q ss_pred cEEEEecchhhHH-HHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVF-GLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~-g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-. -..+.+..+|..|.++++=+. . ....+.+++++.
T Consensus 175 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~ea 226 (516)
T 1uzb_A 175 GAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEA 226 (516)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHH
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7888999998752 223567799999999998653 2 345566666654
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=58.59 E-value=46 Score=24.81 Aligned_cols=64 Identities=3% Similarity=-0.087 Sum_probs=49.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
.|..+ |++...+|-... .+ ..+++.+..|+..+..+ ...++++...+++.++..++..+.....
T Consensus 51 ~Gv~~gd~V~i~~~~~~~-~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 51 DGVHTGDRVAILSQNCSE-MI-ELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TTCCTTCEEEEECCSCHH-HH-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred cCCCCCCEEEEEcCCCHH-HH-HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 36666 888777774433 33 56789999999999886 5788999999999999999987765544
No 43
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=58.59 E-value=37 Score=25.43 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...++-.... + ..+++.+..|+..+..+ ...++++...+++.++..++..+.....+
T Consensus 68 ~Gv~~gd~V~i~~~n~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 68 LGVHPEERILLVMLDTVAL-P-VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TTCCTTCEEEEECCSSTHH-H-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred cCCCCCCEEEEEcCCcHHH-H-HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 36666 8887777744333 3 45689999999998875 56889999999999999998877655443
No 44
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=56.86 E-value=61 Score=24.44 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=46.5
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcC-----ceEEEecHHHHHHHHhCCCCCc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.+++...|+++-..+ .+.+..+|..|.++++=+. .....+.+++++.+ ++++..-+..-..|.+++
T Consensus 143 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~---- 218 (486)
T 1t90_A 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHP---- 218 (486)
T ss_dssp SEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCT----
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhCC----
Confidence 788888998864322 3567789999999998652 24567777777653 233333334445555543
Q ss_pred CCCCCceEEEEec
Q 032003 84 FDLSSLKLVGSGA 96 (149)
Q Consensus 84 ~~l~~lr~~~~gg 96 (149)
.++.+...|
T Consensus 219 ----~v~~I~fTG 227 (486)
T 1t90_A 219 ----EIKAISFVG 227 (486)
T ss_dssp ----TEEEEEEES
T ss_pred ----CCCEEEEeC
Confidence 255665555
No 45
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=56.84 E-value=40 Score=25.72 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
|..+ |++...+|-.... + ..+++.+..|+..+..+ ...++++...+++.++..++..+.....+
T Consensus 95 Gv~~gd~V~i~~~n~~e~-~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 95 GLQRGDRVAVVLPRVPEW-W-LVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CCCTTCEEEEECCSCHHH-H-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCCCEEEEEcCCCHHH-H-HHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 6666 8887777744333 3 56689999999998875 56889999999999999999877665554
No 46
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=56.32 E-value=34 Score=25.88 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=49.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...++-. .-.+ ..+++.+..|+..+..+ ...++.+...+++.++..++........+
T Consensus 70 ~Gv~~gd~V~i~~~n~-~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 70 YGLNTNHRIVVCSENS-LQFF-MPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp HTCCTTCEEEEECSSC-TTTH-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred hCCCCCCEEEEEcCCc-ccHH-HHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 36666 8887777743 3333 56689999999999875 67899999999999999999877665554
No 47
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=53.36 E-value=67 Score=24.44 Aligned_cols=64 Identities=8% Similarity=0.058 Sum_probs=48.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 74 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++..+.....
T Consensus 84 ~Gv~~gd~V~i~~~n~-~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 84 KGIGKDTLVGIMMEKS-IDLF-IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TTCCTTCEEEEECCSS-HHHH-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred cCCCCCCEEEEEeCCC-HHHH-HHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 36666 8887777743 3333 56789999999999886 5688999999999999999887765443
No 48
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=52.73 E-value=73 Score=24.14 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. .....+.+++++.
T Consensus 159 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 210 (501)
T 1uxt_A 159 GVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDA 210 (501)
T ss_dssp SEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHh
Confidence 788899999885333 3667799999999998652 2456677777764
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=52.68 E-value=34 Score=25.91 Aligned_cols=65 Identities=8% Similarity=-0.052 Sum_probs=48.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...++-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++..+.....+
T Consensus 72 ~Gv~~gd~V~i~~~n~-~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 138 (548)
T 2d1s_A 72 YGLVVDGRIALCSENC-EEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKV 138 (548)
T ss_dssp HTCCTTCEEEEECSSC-TTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHH
T ss_pred cCCCCCCEEEEEeCCc-hhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 46666 8877777633 3333 45688899999998775 56889999999999999999877655443
No 50
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=52.55 E-value=56 Score=25.54 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=47.9
Q ss_pred ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
..|..+ |++...+|-.--. + ..+++.+..|+..+..+ .+.++.+...+++-++..++....
T Consensus 133 ~~Gv~~Gd~V~i~~~~~~e~-v-~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 133 SMGVRKGDTVAVYMPMVPEA-I-ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TSCCCTTCEEEECCCSSHHH-H-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred hcCCCCCCEEEEEcCCCHHH-H-HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 346666 8998888855444 3 56789999999988875 678999999999999998887543
No 51
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=52.37 E-value=68 Score=23.91 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=46.5
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+|-.... + ..+++.+..|+..+..+ ...++++...+++.++..++..+.
T Consensus 48 ~Gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 109 (503)
T 4fuq_A 48 RGLQVGDRVAAQTEKSVEA-L-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPS 109 (503)
T ss_dssp TTCCTTCEEEEECCSCHHH-H-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGG
T ss_pred cCCCCCCEEEEECCCCHHH-H-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECch
Confidence 36666 8888777744333 3 56789999999999886 578899999999999999887654
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=52.33 E-value=65 Score=24.11 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=47.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~ 72 (149)
.|..+ |++...+|-..-. + ..+++.+..|+..+..+ ...++++...+++.++..++..+...
T Consensus 63 ~Gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 63 LGIAKGDRVALLMPNSVEF-C-CLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TTCCTTCEEEEECCSSHHH-H-HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred cCCCCcCEEEEEcCCCHHH-H-HHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH
Confidence 36666 8888777744333 3 56789999999999885 56889999999999999888765443
No 53
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=52.14 E-value=75 Score=24.07 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=32.5
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~ 59 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++
T Consensus 161 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e 211 (495)
T 1wnd_A 161 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKD 211 (495)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHTT
T ss_pred CeEEEECCCcchHHHHHHHHHHHHHcCCeeEeeCCCCChHHHHHHHHHHHH
Confidence 788899999875333 3567789999999998652 2 34566666655
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=50.52 E-value=69 Score=23.80 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=46.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEe--cHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV--VPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~--~P~~~~~l 75 (149)
.|..+ |++...+|-.... + ..+++.+..|+..+..+ ...++++...+++.++..++. .+.....+
T Consensus 49 ~Gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 49 DGLRPQQRVAVVAPNSADV-V-IAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TTCCTTCEEEEECCSCHHH-H-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cCCCCCCEEEEEcCCCHHH-H-HHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 36666 8887777744333 3 56789999999998775 568899999999999998887 55544443
No 55
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=50.45 E-value=96 Score=26.08 Aligned_cols=84 Identities=10% Similarity=-0.026 Sum_probs=49.8
Q ss_pred cEEEEecchhhH-HHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEecH-HHHHHHHhCCCCC
Q 032003 14 YVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGLVK 82 (149)
Q Consensus 14 ~~~l~~~p~~h~-~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~P-~~~~~l~~~~~~~ 82 (149)
.++.+..|+++- .-....+..+|..|.++++=+. . ....+.+++++-+ ++++.+.. ..-..+.+++.
T Consensus 668 GVV~~I~PwNfPl~i~~~~~a~ALaaGNtVVlKPse~tplsa~~l~ell~eAGlP~gvvnvV~G~g~~vg~~L~~hp~-- 745 (1026)
T 4f9i_A 668 GVAAVIAPWNFPLAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDYLVDHPD-- 745 (1026)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHHCTT--
T ss_pred ceEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEcCccchHHHHHHHHHHHHhCcCCCeEEEEecCcHHHHHHHHhCCC--
Confidence 789999999883 3333566789999999988653 2 3456666776642 23333322 34455555432
Q ss_pred cCCCCCceEEEEecCCCCHHHHHHHH
Q 032003 83 KFDLSSLKLVGSGAAPLGKELMEECA 108 (149)
Q Consensus 83 ~~~l~~lr~~~~gg~~~~~~~~~~~~ 108 (149)
++.+...| +.++.+.+.
T Consensus 746 ------v~~V~FTG---St~vg~~I~ 762 (1026)
T 4f9i_A 746 ------ISLIAFTG---SMETGLRII 762 (1026)
T ss_dssp ------EEEEEEES---CHHHHHHHH
T ss_pred ------CCEEEeCC---CHHHHHHHH
Confidence 55665655 344444443
No 56
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=48.82 E-value=86 Score=24.03 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=31.4
Q ss_pred cEEEEecchhhH-HHHHHHHHhHhcCCceEEEcC-CCC---HHHHHHHHHh
Q 032003 14 YVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMA-KFD---LEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~-~g~~~~~~~~l~~G~~~v~~~-~~~---~~~~~~~l~~ 59 (149)
.++....|+++- .-..+.+..+|..|.++++=+ ... ...+.+++++
T Consensus 174 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e 224 (538)
T 3qan_A 174 GVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLED 224 (538)
T ss_dssp CEEEEECCSTTTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHH
Confidence 688899999874 233356778999999999865 333 3455555555
No 57
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=48.35 E-value=89 Score=23.85 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=41.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEecHHHHHHHHhCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHG 79 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~~ 79 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.+ ++++.........|.+++
T Consensus 164 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~p 239 (521)
T 4e4g_A 164 GIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTHP 239 (521)
T ss_dssp CEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTCT
T ss_pred cEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhCC
Confidence 678888888775433 2456688999999998652 2 3566777777652 334444445556666554
No 58
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=47.59 E-value=88 Score=23.56 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++-+. . ....+.+++++.
T Consensus 144 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~a 195 (490)
T 2ve5_A 144 GVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEA 195 (490)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 6888889998866553 556789999999998652 2 356666666654
No 59
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=46.58 E-value=93 Score=23.58 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=33.6
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcC-CC---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMA-KF---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~-~~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+ .. ....+.+++++.
T Consensus 161 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 212 (501)
T 1bxs_A 161 GVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEA 212 (501)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ceEEEECCCcchHHHHHHHHHHHHHcCCeeeccCCCccHHHHHHHHHHHHHh
Confidence 688899999875332 356778999999999865 22 356667777665
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=46.39 E-value=71 Score=24.85 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=46.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-.--. + ..+++.+..|+..+..+ .+.++.+...+++.++..++...
T Consensus 127 ~Gv~~Gd~V~i~~~~~~e~-v-va~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 127 LGIKKGDVVAIYMPMVPEA-A-VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp HTCCTTCEEEEECCSSHHH-H-HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred cCCCCCCEEEEEeCCCHHH-H-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 46666 8888888855443 3 56789999999988775 67899999999999998887743
No 61
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=45.53 E-value=97 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=33.5
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.
T Consensus 160 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 211 (500)
T 1o04_A 160 GVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEA 211 (500)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHHHHcCCEEEEECCccChHHHHHHHHHHHHh
Confidence 788899999875333 3567789999999998652 2 355666777664
No 62
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=45.45 E-value=98 Score=23.53 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. .+...+.+++++.
T Consensus 164 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 215 (515)
T 2d4e_A 164 GPVGIITPWNAPLMLSTWRIAPALAFGNTVVLKPAEWSPFTATKLAEILKEA 215 (515)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CceEEECCCCchhhhhhhhhhHHHHcCCeeeecCCCCcHHHHHHHHHHHHHh
Confidence 688888998775332 3566789999999998652 2456667777665
No 63
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=45.11 E-value=95 Score=23.55 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~ 70 (149)
.|..+ |++...+|-..-. + ..+++.+..|+..+..+ ...++++...+++.++..++....
T Consensus 120 ~Gv~~gd~V~i~~~n~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 120 LGVAPGTLVGVHLERGFDM-V-VALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp TTCCTTCEEEEECCSSHHH-H-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred cCCCCCCEEEEEeCCCHHH-H-HHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecch
Confidence 36666 8887777744333 3 56789999999999886 568899999999999998887653
No 64
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=43.87 E-value=1e+02 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=33.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . +...+.+++++.
T Consensus 150 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ll~~a 201 (497)
T 3k2w_A 150 GVVVGITAWNFPLALAGRKIGPALITGNTMVLKPTQETPLATTELGRIAKEA 201 (497)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 6788899988864442 566788999999998652 2 356666676665
No 65
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=43.82 E-value=1e+02 Score=23.28 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=33.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcC-C---CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMA-K---FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~-~---~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+ . .....+.+++++.
T Consensus 148 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 199 (495)
T 3b4w_A 148 GVVGAIVAWNVPLFLAVNKIAPALLAGCTIVLKPAAETPLTANALAEVFAEV 199 (495)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECBTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCcchHHHHHHHHHHHHHcCCEEEEecCCccHHHHHHHHHHHHHh
Confidence 6888899988754432 45668899999999865 2 2456777777775
No 66
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=43.14 E-value=1.1e+02 Score=23.35 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=33.7
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . ....+.+++++.
T Consensus 180 GVV~~I~PwN~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~ea 231 (517)
T 2o2p_A 180 GVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKA 231 (517)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ccEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHh
Confidence 6888899988754432 456688999999998652 2 356777777765
No 67
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=41.35 E-value=1.1e+02 Score=23.01 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=50.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-CC---HHHHHHHHHhcC-----ceEEEecHHHHHHHHhCCCCCc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-FD---LEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. .. ...+.+++++.+ ++++..-+..-..+.+++.
T Consensus 141 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~~~--- 217 (490)
T 3ju8_A 141 GVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAHRG--- 217 (490)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTCTT---
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhCCC---
Confidence 788888888775433 2456688999999998653 33 455666666642 2333333455555655432
Q ss_pred CCCCCceEEEEecCCCCHHHHHHHHH
Q 032003 84 FDLSSLKLVGSGAAPLGKELMEECAK 109 (149)
Q Consensus 84 ~~l~~lr~~~~gg~~~~~~~~~~~~~ 109 (149)
++.+...| +.++.+.+.+
T Consensus 218 -----v~~V~fTG---S~~~g~~i~~ 235 (490)
T 3ju8_A 218 -----LDGLFFTG---SSRTGNLLHS 235 (490)
T ss_dssp -----CSEEEEES---CHHHHHHHHH
T ss_pred -----cCEEEEEC---cHHHHHHHHH
Confidence 44555555 4455555444
No 68
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=40.81 E-value=1.1e+02 Score=22.95 Aligned_cols=85 Identities=8% Similarity=-0.005 Sum_probs=49.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEec-HHHHHHHHhCCCCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVK 82 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~-P~~~~~l~~~~~~~ 82 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.+ ++++... +..-..+.+++.
T Consensus 150 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~~p~-- 227 (484)
T 3ifg_A 150 GVCAAITPWNFPAAMIARKVGPALAAGCPIVVKPAESTPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPI-- 227 (484)
T ss_dssp SSEEEECCSSSTTHHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCHHHHHHHHHHCTT--
T ss_pred cEEEEECCCcChHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCCC--
Confidence 677888888774433 2456688999999998652 2 3566666766643 2333332 345556666543
Q ss_pred cCCCCCceEEEEecCCCCHHHHHHHHH
Q 032003 83 KFDLSSLKLVGSGAAPLGKELMEECAK 109 (149)
Q Consensus 83 ~~~l~~lr~~~~gg~~~~~~~~~~~~~ 109 (149)
++.+...| +.++.+.+.+
T Consensus 228 ------v~~v~FTG---S~~~G~~i~~ 245 (484)
T 3ifg_A 228 ------VRKLSFTG---STAVGRLLMA 245 (484)
T ss_dssp ------CCEEEEES---CHHHHHHHHH
T ss_pred ------cCEEEEEC---CHHHHHHHHH
Confidence 44555555 3444444433
No 69
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=40.66 E-value=1.2e+02 Score=23.35 Aligned_cols=47 Identities=6% Similarity=-0.006 Sum_probs=31.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-.........+.+.|.++++=+. . ....+.+++++-
T Consensus 202 GVV~~I~PwNfP~~~~~~~~apALaGNtVVlKPs~~tp~sa~~l~~ll~eA 252 (563)
T 4e3x_A 202 GFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREA 252 (563)
T ss_dssp SEEEEECCSSCHHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHT
T ss_pred eEEEEECCchHHHHHHHHHHHHhhcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 7888999998876443333344447988887653 2 346667777765
No 70
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=40.20 E-value=1.2e+02 Score=23.08 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=41.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcC-----ceEEEecHHHHHHHHhC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHR-----VTHIWVVPPLILALAKH 78 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~ 78 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. .....+.+++++.+ ++++..-+..-..|.++
T Consensus 152 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g~~~~g~~L~~~ 226 (517)
T 3r31_A 152 GVCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNH 226 (517)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCCCTTHHHHHHTC
T ss_pred cEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEECCHHHHHHHHhC
Confidence 688889998875443 2455688899999998652 34677777777653 23333333445555544
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=40.15 E-value=84 Score=23.39 Aligned_cols=59 Identities=17% Similarity=0.020 Sum_probs=43.2
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...++-.. -.+ ..+++.+..|+..+..+ ...++++...+++.++..++...
T Consensus 49 ~g~~~gd~V~i~~~n~~-~~~-~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 49 LALLAKSPVLVFGAQTY-DML-ATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TCCCTTCCEEEEECSSH-HHH-HHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESS
T ss_pred cCCCCCCEEEEEeCCCH-HHH-HHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecC
Confidence 35555 77766666333 333 56689999999988775 67899999999999998887643
No 72
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=39.30 E-value=1.2e+02 Score=22.82 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=33.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. .....+.+.+++.
T Consensus 148 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 199 (487)
T 2w8n_A 148 GVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQA 199 (487)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 688888998774433 2466789999999998652 2456777777775
No 73
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=39.18 E-value=1.1e+02 Score=23.47 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=45.7
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-..-. + ..+++.+..|+..+..+ ...++++...+++.++..++..+
T Consensus 106 ~Gv~~Gd~V~l~~~~~~e~-~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 106 HGIGKGDYVMLTLKSRYDF-W-YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TTCCTTCEEEEECTTCTHH-H-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCCCCEEEEEcCCCHHH-H-HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 36666 8888887744333 3 56789999999998875 57899999999999999888744
No 74
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=38.87 E-value=1.3e+02 Score=22.97 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=32.9
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . ....+.+++++.
T Consensus 172 GVV~~I~PwN~P~~~~~~~~apALaaGNtVVlKPs~~tp~t~~~l~~l~~ea 223 (520)
T 3ed6_A 172 GVVTQITPWNYPLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEV 223 (520)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHHTCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEEcCCcchHHHHHHHHHHHHh
Confidence 6888999998865442 445688999999998652 2 355666666654
No 75
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=38.81 E-value=33 Score=25.10 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.2
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEE
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVI 117 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~ 117 (149)
-+.+++||.+-++.+.+++++.+++.++.
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~ 313 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLMPEARVA 313 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHCTTSEEE
T ss_pred ceEEEECCccCcHHHHHHHHHhCCCCEEe
Confidence 36788999999999999999998755543
No 76
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=38.48 E-value=1.1e+02 Score=23.04 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=45.0
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ ...++.+...+++.++..++..+
T Consensus 75 ~Gv~~gd~V~i~~~n~-~~~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 75 KGLGKGDTALVQLPNV-AEFY-IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TTCCTTCEEEECCCSS-HHHH-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCCCEEEEECCCC-HHHH-HHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 36666 8888777743 3333 56789999999888765 56889999999999999888754
No 77
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=37.48 E-value=1.3e+02 Score=22.64 Aligned_cols=59 Identities=8% Similarity=-0.034 Sum_probs=44.6
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++..+
T Consensus 70 ~Gv~~gd~V~i~~~~~-~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 70 LGIQQKDRVVVQLPNI-KEFF-EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp HTCCTTCEEEECCCSS-HHHH-HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred cCCCCCCEEEEEcCCc-HHHH-HHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecc
Confidence 36666 8887777743 3333 56789999999888775 57889999999999999888754
No 78
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=36.97 E-value=1.4e+02 Score=22.72 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=40.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEe-cHHHHHHHHhCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWV-VPPLILALAKHG 79 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~-~P~~~~~l~~~~ 79 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.+ ++++.. .+..-..+.+++
T Consensus 149 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~~p 225 (506)
T 3rh9_A 149 GVTGLIVPWNFPIGMIAKKLSAALAAGCPSVIKPASETPLTMIAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCEHK 225 (506)
T ss_dssp CSEEEECCSSSTTHHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHTTTTCCTTSEEECCSCHHHHHHHHHHCT
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHHHHHHhCcChhhEEEEeCCChHHHHHHHhCC
Confidence 677788888774332 2456788999999998652 2 3566667776652 233333 224445565554
No 79
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=36.20 E-value=1.3e+02 Score=22.23 Aligned_cols=55 Identities=5% Similarity=0.016 Sum_probs=42.9
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 13 ~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
.|++...+|-. .-.+ ..+++.+..|+..+..+ ...++.+...+++.++..++...
T Consensus 48 gd~V~i~~~n~-~e~~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 48 QSRVGLYIDNS-IQSI-ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp CSEEEEECCSS-HHHH-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESS
T ss_pred CCEEEEEcCCC-HHHH-HHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcc
Confidence 37777777743 3333 56789999999999886 57899999999999999888753
No 80
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=35.79 E-value=1.4e+02 Score=22.56 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.
T Consensus 163 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 214 (497)
T 3i44_A 163 GVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEA 214 (497)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCcccHHHHHHHHHHHHHh
Confidence 788889998885433 2556688999999998652 2 356666666665
No 81
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=35.73 E-value=1.4e+02 Score=22.42 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=33.8
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. .....+.+.+++.
T Consensus 144 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 195 (479)
T 2imp_A 144 GVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEI 195 (479)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHh
Confidence 6888889988765443 456789999999998652 2456677777764
No 82
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=35.06 E-value=1.4e+02 Score=22.43 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=50.1
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcC-CCC---HHHHHHHHHhcC-----ceEEEecHHHHHHHHhCCCCCc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMA-KFD---LEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~-~~~---~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~~~~~~ 83 (149)
.++....|+++-..+ .+.+..+|..|.++++=+ ... ...+.+++++.+ ++++.........+.+++.
T Consensus 125 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~p~--- 201 (484)
T 3ros_A 125 GVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGSLINLYPSYDQLADIIADPR--- 201 (484)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHTCCTTSEEEECCCHHHHHHHHTSTT---
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCChHHHHHHHhCCC---
Confidence 788888888774333 245668899999999865 333 455666666553 3444444444444655432
Q ss_pred CCCCCceEEEEec-CCCCHHHHHHHH
Q 032003 84 FDLSSLKLVGSGA-APLGKELMEECA 108 (149)
Q Consensus 84 ~~l~~lr~~~~gg-~~~~~~~~~~~~ 108 (149)
++.+...| ......+.+...
T Consensus 202 -----vd~I~fTGS~~~G~~i~~~aa 222 (484)
T 3ros_A 202 -----IQGVALTGSERGGSAVAEAAG 222 (484)
T ss_dssp -----EEEEEEESCHHHHHHHHHHHH
T ss_pred -----cCEEEEECCHHHHHHHHHHHh
Confidence 44555544 333344444433
No 83
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=34.48 E-value=36 Score=24.91 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.6
Q ss_pred eEEEEecCCCCHHHHHHHHHhCCCCcE
Q 032003 90 KLVGSGAAPLGKELMEECAKNVPSATV 116 (149)
Q Consensus 90 r~~~~gg~~~~~~~~~~~~~~~~~~~i 116 (149)
+.+.+||..-++.+.+++++++|+.++
T Consensus 292 ~v~vcGGGa~N~~Lm~~L~~~l~~~~v 318 (370)
T 3cqy_A 292 ELFVCGGGAFNAELMQRLAALLPGYRI 318 (370)
T ss_dssp EEEEESGGGGCHHHHHHHHHHCTTEEE
T ss_pred EEEEECCCcCCHHHHHHHHHhCCCCee
Confidence 689999999999999999999875444
No 84
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=34.07 E-value=1.2e+02 Score=22.50 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=41.7
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~ 68 (149)
+..+ |++...++-.. -.+ ..+++.+..|+..+..+ ...++++...+++.++..++..
T Consensus 47 g~~~gd~V~i~~~n~~-e~~-~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 47 YPDDRSPIMVYGHMQP-EMI-INFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp STTCCCCEEEEESSCH-HHH-HHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEES
T ss_pred CCCCCCEEEEEeCCCH-HHH-HHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEec
Confidence 5555 76666665333 223 56689999999888775 6788999999999998887754
No 85
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=33.25 E-value=1.6e+02 Score=22.36 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=40.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC--ceEEEec----HHHHHHHHhCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR--VTHIWVV----PPLILALAKHG 79 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~--~t~~~~~----P~~~~~l~~~~ 79 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++.+ ...+..+ +..-..+.+++
T Consensus 170 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~t~~~l~~l~~eaGlP~gv~~vv~g~~~~~g~~L~~~p 246 (504)
T 3ek1_A 170 GVTAAITPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSND 246 (504)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTTEEECCSCHHHHHHHHHHCT
T ss_pred eEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhCC
Confidence 688888888875433 2456788999999998652 2 3566667776642 2222222 34455566554
No 86
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=33.18 E-value=1.5e+02 Score=22.06 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=40.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-CC---HHHHHHHHHhcC-----ceEEEecHHHHHHHHhCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-FD---LEMFLRAIEKHR-----VTHIWVVPPLILALAKHG 79 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~~---~~~~~~~l~~~~-----~t~~~~~P~~~~~l~~~~ 79 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. .. ...+.+++++.+ ++++...+.....+.+++
T Consensus 128 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g~~~~~~~l~~~~ 203 (462)
T 3etf_A 128 GVILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMINDP 203 (462)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCCCHHHHHHHHTST
T ss_pred cEEEEECCCchHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEECCHHHHHHHhcCC
Confidence 788888888775433 2456788999999998653 33 455666666532 333333445555565543
No 87
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=32.85 E-value=1.6e+02 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=32.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . ....+.+++++.
T Consensus 163 GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~ea 214 (528)
T 3u4j_A 163 GVVGIITPWNFPFIIASERVPWAIGSGCTVVLKPSEFTSGTSIRLAELAREA 214 (528)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHcCCeEEEEcCCccHHHHHHHHHHHHHh
Confidence 6888889988755442 345678899999988652 2 356666666654
No 88
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=32.68 E-value=1.6e+02 Score=22.26 Aligned_cols=47 Identities=15% Similarity=0.007 Sum_probs=33.4
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . ....+.+++++.
T Consensus 153 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 204 (503)
T 3iwj_A 153 GVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASLTCLELGEICKEV 204 (503)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCchHHHHHHHHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHHh
Confidence 7888999998865543 445688899999998652 2 356666777664
No 89
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=32.39 E-value=1e+02 Score=19.98 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH---H---HHHHHHhCCCCCcCCC-CCceEEEE
Q 032003 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP---P---LILALAKHGLVKKFDL-SSLKLVGS 94 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P---~---~~~~l~~~~~~~~~~l-~~lr~~~~ 94 (149)
.|.-|.......--..|-.++... ...++.+.+.++++++..+...- + .+..+.+.- +...+ +++ .++.
T Consensus 100 ~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l--~~~~~~~~~-~v~v 176 (210)
T 1y80_A 100 LHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDAL--IAAGLRDRV-KVIV 176 (210)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHH--HHTTCGGGC-EEEE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHH--HhcCCCCCC-eEEE
Confidence 778887444434446677777554 56789999999999988776632 1 222222211 11112 234 4678
Q ss_pred ecCCCCHHHH
Q 032003 95 GAAPLGKELM 104 (149)
Q Consensus 95 gg~~~~~~~~ 104 (149)
||.+.+++..
T Consensus 177 GG~~~~~~~~ 186 (210)
T 1y80_A 177 GGAPLSQDFA 186 (210)
T ss_dssp ESTTCCHHHH
T ss_pred ECCCCCHHHH
Confidence 8888887654
No 90
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=31.79 E-value=1.7e+02 Score=22.19 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=34.0
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK----FDLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~ 60 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. .....+.+++++.
T Consensus 157 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta~~l~~l~~~a 208 (503)
T 1a4s_A 157 GVCAGILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEA 208 (503)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 788889998885443 2456789999999998652 2456777777765
No 91
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=31.02 E-value=1.6e+02 Score=24.10 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=47.1
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~ 71 (149)
.|..+ |++...+|-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++..+..
T Consensus 108 ~Gv~~gd~V~i~~~ns-~e~~-v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 170 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNC-PEFV-LSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY 170 (979)
T ss_dssp TTCCTTCEEEEECSSC-HHHH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTT
T ss_pred cCCCCcCEEEEEeCCC-HHHH-HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHH
Confidence 46666 8888777744 3333 56789999999999775 6789999999999999998886543
No 92
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=30.23 E-value=1e+02 Score=20.93 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecH------HHHHHHHhCCCCCcCCCCCceEEEEe
Q 032003 23 FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP------PLILALAKHGLVKKFDLSSLKLVGSG 95 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P------~~~~~l~~~~~~~~~~l~~lr~~~~g 95 (149)
.|.-|.......--..|-.++.. ....++.+.+.++++++..+...- ..+..+.+.-+ ...+. + .++.|
T Consensus 135 ~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~--~~~~~-~-~v~vG 210 (258)
T 2i2x_B 135 VHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLL--ENGIK-I-PFACG 210 (258)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHH--TTTCC-C-CEEEE
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHH--hcCCC-C-cEEEE
Confidence 78888744444444678777644 456789999999999988777632 12222222111 11122 3 46788
Q ss_pred cCCCCHHHH
Q 032003 96 AAPLGKELM 104 (149)
Q Consensus 96 g~~~~~~~~ 104 (149)
|.+.+++..
T Consensus 211 G~~~~~~~~ 219 (258)
T 2i2x_B 211 GGAVNQDFV 219 (258)
T ss_dssp STTCCHHHH
T ss_pred CccCCHHHH
Confidence 888886643
No 93
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=29.54 E-value=1.8e+02 Score=21.91 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=48.8
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcCceEEEecHHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHRVTHIWVVPPLILALA 76 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~ 76 (149)
.|..+ |++...+|-... .+ ..+++.+..|+..+..+. . ..+.+...+++.++..++..+.....+.
T Consensus 60 ~gv~~gd~V~i~~~~~~~-~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 60 EGAKPGDRVLLLFAPGLP-LI-QAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp TTCCTTCEEEEECCSSHH-HH-HHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCCCCEEEEEcCCchh-HH-HHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 36666 888877774433 33 567899999999998764 3 3467888899999999998888776653
No 94
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=28.47 E-value=1.9e+02 Score=21.71 Aligned_cols=75 Identities=9% Similarity=0.004 Sum_probs=45.4
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEe-cHHHHHHHHhCCCCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWV-VPPLILALAKHGLVK 82 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~-~P~~~~~l~~~~~~~ 82 (149)
.++....|+++-..+ .+.+..+|..|.++++-+. . ....+.+++++.+ ++++.. .+..-..+.+++.
T Consensus 147 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~p~-- 224 (481)
T 3jz4_A 147 GVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPL-- 224 (481)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTTEEECCBCTHHHHHHHHHCTT--
T ss_pred cEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCCCeEEEEeCCChHHHHHHHhCCC--
Confidence 678888888774332 2456788999999998652 2 3566666666642 233333 2345556655432
Q ss_pred cCCCCCceEEEEec
Q 032003 83 KFDLSSLKLVGSGA 96 (149)
Q Consensus 83 ~~~l~~lr~~~~gg 96 (149)
++.+...|
T Consensus 225 ------v~~I~fTG 232 (481)
T 3jz4_A 225 ------VRKLSFTG 232 (481)
T ss_dssp ------EEEEEEES
T ss_pred ------cCEEEEEC
Confidence 55555555
No 95
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=28.30 E-value=1.9e+02 Score=21.69 Aligned_cols=65 Identities=6% Similarity=-0.075 Sum_probs=46.9
Q ss_pred cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCC-------HHHHHHHHHhcCceEEEecHHHHHHH
Q 032003 9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFD-------LEMFLRAIEKHRVTHIWVVPPLILAL 75 (149)
Q Consensus 9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~-------~~~~~~~l~~~~~t~~~~~P~~~~~l 75 (149)
.|..+ |++...+|-..-. + ..+++.+..|+..+..+ ... .+++...+++.++..++........+
T Consensus 69 ~Gv~~gd~V~i~~~~~~~~-~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 69 LNLKKGDRVALIAETSSEF-V-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp TCCCTTCEEEEECCSSHHH-H-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred cCCCCCCEEEEEcCCcHHH-H-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHH
Confidence 35666 8888777744333 3 56789999999998775 333 68888899999999888876554443
No 96
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=27.39 E-value=1.3e+02 Score=22.01 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=48.0
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (149)
Q Consensus 10 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 77 (149)
+...|++...++- ..-.+ ..+++.+..|+..+..+. ...+++...+++.++..++..+.....+..
T Consensus 79 g~~gd~V~i~~~n-~~e~~-~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 79 GSTGDRVVISAPQ-GLEYV-VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp SCTTCEEEEECCS-SHHHH-HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCCEEEEEcCC-cHHHH-HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 4433888777763 33333 567899999999987753 356888899999999999988776665543
No 97
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=26.47 E-value=2.1e+02 Score=21.61 Aligned_cols=33 Identities=3% Similarity=-0.106 Sum_probs=25.2
Q ss_pred cEEEEecchhhHHH-HHHHHHhHhcCCceEEEcC
Q 032003 14 YVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMA 46 (149)
Q Consensus 14 ~~~l~~~p~~h~~g-~~~~~~~~l~~G~~~v~~~ 46 (149)
.+++...|+++-.. ..+.+..+|..|.++++=+
T Consensus 159 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKp 192 (500)
T 2j6l_A 159 GLVGIITAFNFPVAVYGWNNAIAMICGNVCLWKG 192 (500)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEECCCcchhhHHHHHHHHHHHhCCEEEEEC
Confidence 68888899987532 2356778999999999865
No 98
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=25.83 E-value=26 Score=27.28 Aligned_cols=35 Identities=6% Similarity=0.018 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEE-eeecccccc
Q 032003 89 LKLVGSGAAPLGKELMEECAKNVPSATVI-QVVQFEHLY 126 (149)
Q Consensus 89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~ 126 (149)
+..+..||. ..=.++++..+|+.++. ..|++||+-
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~ 337 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT 337 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce
Confidence 555666663 33334555656667777 999999964
No 99
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=25.81 E-value=3e+02 Score=23.15 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=31.9
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcC-CCC---HHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMA-KFD---LEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~-~~~---~~~~~~~l~~~ 60 (149)
.++.+..|+++-..+ ...+..+|..|.++++=+ ... ...+.+++++-
T Consensus 651 GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l~ell~eA 702 (1001)
T 3haz_A 651 GVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREAVALLHEA 702 (1001)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHHHHHHHHh
Confidence 788999998875332 355678999999998865 333 34555555553
No 100
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=25.36 E-value=2.3e+02 Score=21.70 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=43.6
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
|..+ |++...++-.... + ..+++.+..|+..+..+ ....+++...+++.++..+....
T Consensus 71 Gv~~gd~V~l~~~~s~~~-v-va~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 71 GIKPGETALVQLGNVAEL-Y-ITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp TCCTTCEEEEECCSSHHH-H-HHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCCEEEEECCCcHHH-H-HHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecc
Confidence 6666 7877777744333 3 56789999999988765 56788999999999998887754
No 101
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=24.71 E-value=1.7e+02 Score=21.67 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=40.2
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~ 67 (149)
+... |++....+-. .-.+ ..+++.+..|+..+..+ ...++++...+++.++..++.
T Consensus 48 ~~~~g~~V~i~~~n~-~~~~-~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~ 105 (511)
T 3e7w_A 48 SGEKKSPILVYGHME-PHMI-VSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH 105 (511)
T ss_dssp CSSSCCCEEEEESSC-HHHH-HHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCeEEEEecCC-HHHH-HHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEe
Confidence 3444 6666555532 2223 45678899999888774 678999999999999998876
No 102
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=24.04 E-value=2.3e+02 Score=21.26 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 10 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
+...|++...++-.... + ..+++.+..|+..+..+ ...++++...+++.++..++...
T Consensus 76 g~~gd~V~i~~~n~~~~-~-~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 76 SLHGRAIAVSLDRSLIA-F-AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp TCSSCEEEEECCSCHHH-H-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCCCCEEEEEeCCCHHH-H-HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 45348887777744333 3 56789999999999875 57889999999999988877643
No 103
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=23.38 E-value=2.4e+02 Score=21.28 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=31.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHh
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~ 59 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+++++
T Consensus 163 GVv~~I~PwN~P~~~~~~~~a~ALaaGNtVVlKPs~~tp~t~~~l~~l~~e 213 (498)
T 4f3x_A 163 GIVGSIAPWNYPLMMMAWKLAPAIGGGNTVVFKPSEQTPLTALKLARLIAD 213 (498)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHT
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCeEEEECCcccHHHHHHHHHHHHH
Confidence 688888998875443 2455688999999998652 2 34555555554
No 104
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=22.28 E-value=2.6e+02 Score=21.14 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=32.6
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhc
Q 032003 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH 60 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~ 60 (149)
.++....|+++-..+. +.+..+|..|.++++=+. . +...+.+++++.
T Consensus 144 GVv~~I~PwNfP~~~~~~~~a~ALaaGNtVVlKPse~tp~ta~~l~~l~~ea 195 (490)
T 2wme_A 144 GVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEA 195 (490)
T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEeccccCcchhhhhhHHHHHHcCCeEEEECCcCCHHHHHHHHHHHHHh
Confidence 6888899998855443 445678889999988652 2 356666666654
No 105
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=21.84 E-value=74 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=30.2
Q ss_pred EEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHh
Q 032003 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEK 59 (149)
Q Consensus 16 ~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~ 59 (149)
+...-=+....|+ ..+.+++..|+.+++.| +++.+.+.+.+++
T Consensus 163 v~iVEvMGR~aG~-lAl~a~lA~ga~~iliPE~~~~~~~i~~~i~~ 207 (319)
T 1zxx_A 163 VFIVNVMGRNCGD-IAMRVGVACGADAIVIPERPYDVEEIANRLKQ 207 (319)
T ss_dssp EEEEEECCTTCCH-HHHHHHHHTTCSEEECTTSCCCHHHHHHHHHH
T ss_pred EEEEEeCCCCHHH-HHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3333334556666 66788899999999987 5788888777643
No 106
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=21.75 E-value=2.5e+02 Score=20.93 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=49.7
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhcCCceEEEcCC-C---CHHHHHHHHHhcC-----ceEEEec-HHHHHHHHhCCCCC
Q 032003 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVK 82 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~-~~~~~~~l~~G~~~v~~~~-~---~~~~~~~~l~~~~-----~t~~~~~-P~~~~~l~~~~~~~ 82 (149)
.++....|+++-..+ .+.+..+|..|.++++=+. . ....+.+.+++.+ ++++... +..-..+.+++
T Consensus 145 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~~~~~~L~~~~--- 221 (475)
T 1euh_A 145 GLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQ--- 221 (475)
T ss_dssp SEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCT---
T ss_pred ceEEEECCCCchHHHHHHHHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHHhCC---
Confidence 788889998875433 2466789999999998653 3 3455666666542 2333332 22344454443
Q ss_pred cCCCCCceEEEEecCCCCHHHHHHHHHh
Q 032003 83 KFDLSSLKLVGSGAAPLGKELMEECAKN 110 (149)
Q Consensus 83 ~~~l~~lr~~~~gg~~~~~~~~~~~~~~ 110 (149)
.++.+...| +.++.+.+.+.
T Consensus 222 -----~v~~V~fTG---S~~~g~~i~~~ 241 (475)
T 1euh_A 222 -----AVNFINFTG---STGIGERIGKM 241 (475)
T ss_dssp -----TCCEEEEES---CHHHHHHHHHH
T ss_pred -----CcCEEEEEC---chHHHHHHHHh
Confidence 244555555 34555555543
No 107
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=21.40 E-value=2e+02 Score=21.33 Aligned_cols=54 Identities=9% Similarity=-0.038 Sum_probs=40.1
Q ss_pred cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecH
Q 032003 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (149)
Q Consensus 14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P 69 (149)
|++...++-.... + ..+++.+..|+..+..+ ...++++...+++-++..++..+
T Consensus 69 ~~V~i~~~~~~~~-~-~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 69 GRVAVWATPAMET-G-VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp -CEEEECCSSHHH-H-HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred CEEEEEcCCCHHH-H-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 5666666533332 3 46688899999999775 67889999999999999988754
No 108
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=21.39 E-value=76 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=29.0
Q ss_pred ecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHh
Q 032003 19 VLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEK 59 (149)
Q Consensus 19 ~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~ 59 (149)
.-=+....|+ ..+.+++..|+.+++.| +++.+.+.+.+++
T Consensus 167 VEvMGR~aG~-lAl~a~lA~ga~~iliPE~~~~~~~i~~~i~~ 208 (320)
T 1pfk_A 167 VEVMGRYCGD-LTLAAAIAGGCEFVVVPEVEFSREDLVNEIKA 208 (320)
T ss_dssp EEECCTTCCH-HHHHHHHHTTCSEEECTTSCCCHHHHHHHHHH
T ss_pred EEeCCcCHHH-HHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3334555666 56788899999999987 5788888777653
No 109
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=20.90 E-value=1.4e+02 Score=17.89 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=24.8
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCCcEE-eeecccccc
Q 032003 91 LVGSGAAPLGKELMEECAKNVPSATVI-QVVQFEHLY 126 (149)
Q Consensus 91 ~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~ 126 (149)
.+++||..+++++.+...+. +++++ ..|.+.|+.
T Consensus 78 iIlt~g~~~~~~i~~~A~~~--~ipvl~t~~~T~~~~ 112 (139)
T 2ioj_A 78 LILTGNLEPVQLVLTKAEER--GVPVILTGHDTLTAV 112 (139)
T ss_dssp EEEETTCCCCHHHHHHHHHH--TCCEEECSSCHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHC--CCeEEEECCCHHHHH
Confidence 47788999999999888766 46654 455666654
No 110
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=20.68 E-value=2.9e+02 Score=21.25 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=42.5
Q ss_pred CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 032003 10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (149)
Q Consensus 10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~ 67 (149)
|..+ |++...++-.... + ..+++.+..|+..+..+ ...++++...+++.++..+..
T Consensus 73 Gv~~g~~V~i~~~~s~~~-v-va~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~ 130 (620)
T 4dg8_A 73 YPQPGVCLGVYGEYSRES-I-TCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD 130 (620)
T ss_dssp CCSSCCEEEEESSSCHHH-H-HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEE
T ss_pred CCCCCCEEEEEeCCCHHH-H-HHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEe
Confidence 5666 7777777644333 3 56789999999999886 567888999999999988774
No 111
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.28 E-value=3.1e+02 Score=21.38 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecH---HHHH---HHHhCCCCCcCCCCCceEEEEe
Q 032003 23 FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP---PLIL---ALAKHGLVKKFDLSSLKLVGSG 95 (149)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P---~~~~---~l~~~~~~~~~~l~~lr~~~~g 95 (149)
.|.-|.......--.+|-.++.. ....++.+.+.++++++..+.+.- .... .+.+.-+ ...+ .++ ++.|
T Consensus 110 ~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr--~~g~-~i~-ViVG 185 (579)
T 3bul_A 110 VHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEME--RQGF-TIP-LLIG 185 (579)
T ss_dssp CCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHH--HTTC-CSC-EEEE
T ss_pred CchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHH--HcCC-CCe-EEEE
Confidence 68888744444444677777655 457899999999999988877632 2222 1221111 1112 343 6788
Q ss_pred cCCCCHHHH
Q 032003 96 AAPLGKELM 104 (149)
Q Consensus 96 g~~~~~~~~ 104 (149)
|.+++.+..
T Consensus 186 Ga~~~~~~a 194 (579)
T 3bul_A 186 GATTSKAHT 194 (579)
T ss_dssp STTCCHHHH
T ss_pred ccccchhhh
Confidence 988888654
Done!