Query 032004
Match_columns 149
No_of_seqs 105 out of 1468
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02378 glutathione S-transfe 100.0 6.8E-33 1.5E-37 196.7 15.6 149 1-149 1-149 (213)
2 PLN02817 glutathione dehydroge 100.0 1.5E-29 3.2E-34 184.4 14.6 146 3-149 56-201 (265)
3 TIGR00862 O-ClC intracellular 100.0 5.4E-28 1.2E-32 173.1 14.4 146 2-149 2-170 (236)
4 PRK09481 sspA stringent starva 99.9 1.8E-26 3.9E-31 163.5 13.8 132 16-149 15-156 (211)
5 cd03061 GST_N_CLIC GST_N famil 99.9 1.2E-26 2.5E-31 142.7 9.4 85 2-87 5-89 (91)
6 KOG1422 Intracellular Cl- chan 99.9 2.2E-25 4.8E-30 152.9 14.0 149 1-149 2-155 (221)
7 PLN02473 glutathione S-transfe 99.9 2.4E-24 5.2E-29 152.8 13.8 138 1-149 1-164 (214)
8 PRK15113 glutathione S-transfe 99.9 6.1E-24 1.3E-28 150.9 13.9 129 19-149 15-166 (214)
9 KOG0406 Glutathione S-transfer 99.9 3.4E-24 7.3E-29 151.0 11.6 134 14-148 12-158 (231)
10 KOG0868 Glutathione S-transfer 99.9 5.7E-24 1.2E-28 142.6 11.5 127 23-149 17-163 (217)
11 TIGR01262 maiA maleylacetoacet 99.9 1.4E-23 3.1E-28 148.3 11.7 133 17-149 5-160 (210)
12 COG0625 Gst Glutathione S-tran 99.9 1.3E-23 2.8E-28 148.8 10.2 129 19-149 8-160 (211)
13 PLN02395 glutathione S-transfe 99.9 4.1E-23 8.8E-28 146.5 11.8 137 1-149 1-163 (215)
14 PRK13972 GSH-dependent disulfi 99.9 5.8E-23 1.3E-27 145.9 11.5 126 20-149 9-161 (215)
15 PRK10542 glutathionine S-trans 99.9 7.2E-23 1.6E-27 143.8 11.4 127 21-149 9-153 (201)
16 PRK10357 putative glutathione 99.9 1.4E-21 3E-26 137.5 13.1 129 18-149 7-153 (202)
17 PRK11752 putative S-transferas 99.9 3.2E-21 6.9E-26 140.9 12.8 126 20-149 52-207 (264)
18 PRK10387 glutaredoxin 2; Provi 99.9 3.1E-21 6.7E-26 136.3 11.4 127 18-149 7-170 (210)
19 PTZ00057 glutathione s-transfe 99.9 1.8E-21 3.9E-26 137.4 10.1 129 16-149 9-154 (205)
20 TIGR02182 GRXB Glutaredoxin, G 99.8 3E-20 6.5E-25 131.5 12.6 129 16-149 4-169 (209)
21 KOG0867 Glutathione S-transfer 99.8 2.6E-20 5.6E-25 133.2 11.5 138 1-149 1-162 (226)
22 PF13417 GST_N_3: Glutathione 99.8 1.6E-20 3.5E-25 112.4 6.7 71 17-87 4-74 (75)
23 cd03059 GST_N_SspA GST_N famil 99.8 3E-19 6.6E-24 106.1 8.6 67 18-84 7-73 (73)
24 PF13409 GST_N_2: Glutathione 99.8 4.5E-19 9.7E-24 104.7 7.8 65 19-83 1-70 (70)
25 cd03052 GST_N_GDAP1 GST_N fami 99.8 4.4E-19 9.6E-24 105.6 7.6 64 18-81 7-73 (73)
26 cd03058 GST_N_Tau GST_N family 99.8 6.7E-19 1.5E-23 105.0 8.4 67 18-84 7-74 (74)
27 cd03041 GST_N_2GST_N GST_N fam 99.8 8.5E-19 1.8E-23 105.4 8.0 66 19-84 9-77 (77)
28 cd03060 GST_N_Omega_like GST_N 99.8 6.8E-19 1.5E-23 104.2 7.3 65 16-80 5-70 (71)
29 cd03053 GST_N_Phi GST_N family 99.8 2E-18 4.4E-23 103.4 8.1 65 19-83 9-76 (76)
30 cd03038 GST_N_etherase_LigE GS 99.8 3E-18 6.6E-23 104.6 8.1 80 3-85 1-84 (84)
31 cd03045 GST_N_Delta_Epsilon GS 99.8 2.5E-18 5.4E-23 102.4 7.5 65 18-82 7-74 (74)
32 cd03055 GST_N_Omega GST_N fami 99.8 5.2E-18 1.1E-22 104.7 7.4 65 17-81 24-89 (89)
33 cd03048 GST_N_Ure2p_like GST_N 99.7 8.7E-18 1.9E-22 101.9 8.2 67 20-86 9-81 (81)
34 cd03043 GST_N_1 GST_N family, 99.7 8.9E-18 1.9E-22 99.9 8.0 67 15-81 5-73 (73)
35 cd03050 GST_N_Theta GST_N fami 99.7 1.2E-17 2.6E-22 100.0 8.1 68 17-84 6-76 (76)
36 cd03076 GST_N_Pi GST_N family, 99.7 5.8E-18 1.2E-22 100.8 6.2 64 19-82 9-72 (73)
37 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.4E-17 3.1E-22 99.5 7.3 68 15-82 4-74 (75)
38 cd03056 GST_N_4 GST_N family, 99.7 1.5E-17 3.2E-22 98.7 7.2 65 17-81 6-73 (73)
39 cd03049 GST_N_3 GST_N family, 99.7 1.7E-17 3.8E-22 98.6 7.1 64 18-81 7-73 (73)
40 cd03046 GST_N_GTT1_like GST_N 99.7 3.1E-17 6.7E-22 98.1 7.9 65 21-85 9-76 (76)
41 cd03080 GST_N_Metaxin_like GST 99.7 5.5E-17 1.2E-21 97.0 8.9 74 3-85 2-75 (75)
42 KOG1695 Glutathione S-transfer 99.7 9.8E-17 2.1E-21 112.3 11.2 132 15-149 7-154 (206)
43 cd03057 GST_N_Beta GST_N famil 99.7 3.8E-17 8.2E-22 98.1 7.6 64 22-85 10-77 (77)
44 cd03037 GST_N_GRX2 GST_N famil 99.7 3.6E-17 7.7E-22 96.7 7.3 65 17-82 6-71 (71)
45 cd03051 GST_N_GTT2_like GST_N 99.7 2.8E-17 6.1E-22 97.6 6.5 64 18-81 7-74 (74)
46 cd03047 GST_N_2 GST_N family, 99.7 5E-17 1.1E-21 96.6 7.5 63 19-81 8-73 (73)
47 cd03039 GST_N_Sigma_like GST_N 99.7 2E-17 4.3E-22 98.1 5.1 65 18-82 7-72 (72)
48 PF02798 GST_N: Glutathione S- 99.7 7.4E-17 1.6E-21 96.7 7.3 61 22-82 11-76 (76)
49 cd03040 GST_N_mPGES2 GST_N fam 99.7 9.5E-17 2.1E-21 96.3 7.0 63 20-84 10-76 (77)
50 cd03075 GST_N_Mu GST_N family, 99.7 9.2E-17 2E-21 97.6 6.5 69 16-84 5-82 (82)
51 cd03042 GST_N_Zeta GST_N famil 99.7 1.4E-16 3E-21 94.5 7.0 63 19-81 8-73 (73)
52 cd03054 GST_N_Metaxin GST_N fa 99.7 6.8E-16 1.5E-20 91.5 8.2 72 3-83 1-72 (72)
53 KOG4420 Uncharacterized conser 99.6 3.5E-16 7.6E-21 110.9 6.6 79 13-91 28-110 (325)
54 cd03077 GST_N_Alpha GST_N fami 99.6 9.8E-16 2.1E-20 92.5 6.9 64 19-85 9-77 (79)
55 cd00570 GST_N_family Glutathio 99.6 1.6E-15 3.4E-20 88.5 7.2 63 19-81 8-71 (71)
56 PLN02907 glutamate-tRNA ligase 99.6 5.9E-15 1.3E-19 120.0 10.8 116 1-149 1-119 (722)
57 cd03079 GST_N_Metaxin2 GST_N f 99.5 4E-13 8.7E-18 79.5 7.1 61 17-83 14-74 (74)
58 KOG4244 Failed axon connection 99.4 4.3E-12 9.4E-17 90.6 10.5 124 16-148 57-231 (281)
59 TIGR02190 GlrX-dom Glutaredoxi 99.3 7.9E-12 1.7E-16 75.3 6.7 72 1-81 8-79 (79)
60 COG2999 GrxB Glutaredoxin 2 [P 99.3 2.6E-11 5.7E-16 81.9 7.8 70 17-87 6-76 (215)
61 cd03078 GST_N_Metaxin1_like GS 99.2 1.1E-10 2.3E-15 69.2 7.9 72 3-83 1-72 (73)
62 COG0435 ECM4 Predicted glutath 99.2 1.9E-10 4.2E-15 82.7 8.5 128 19-148 59-233 (324)
63 PRK10638 glutaredoxin 3; Provi 99.2 2E-10 4.4E-15 69.7 7.0 71 2-81 3-74 (83)
64 cd03029 GRX_hybridPRX5 Glutare 99.1 3.1E-10 6.7E-15 67.0 7.0 71 2-81 2-72 (72)
65 KOG2903 Predicted glutathione 99.1 2.2E-09 4.8E-14 76.7 9.6 130 19-148 45-233 (319)
66 PRK10329 glutaredoxin-like pro 99.0 1.5E-09 3.3E-14 65.6 5.7 62 1-71 1-62 (81)
67 cd03027 GRX_DEP Glutaredoxin ( 98.9 5.3E-09 1.1E-13 61.9 6.3 68 2-78 2-70 (73)
68 KOG3027 Mitochondrial outer me 98.9 3.2E-08 6.9E-13 68.6 10.7 124 17-148 31-205 (257)
69 COG0695 GrxC Glutaredoxin and 98.8 2.1E-08 4.6E-13 60.4 6.7 70 1-79 1-73 (80)
70 cd02066 GRX_family Glutaredoxi 98.8 2.3E-08 5E-13 58.2 6.5 60 20-79 10-70 (72)
71 cd03418 GRX_GRXb_1_3_like Glut 98.7 5.7E-08 1.2E-12 57.5 6.6 70 3-81 2-73 (75)
72 PRK11200 grxA glutaredoxin 1; 98.7 7.9E-08 1.7E-12 58.5 7.2 76 1-85 1-84 (85)
73 TIGR02196 GlrX_YruB Glutaredox 98.7 1.1E-07 2.4E-12 55.6 6.3 61 20-80 10-73 (74)
74 TIGR02181 GRX_bact Glutaredoxi 98.7 1.2E-07 2.7E-12 56.7 6.3 64 19-82 8-72 (79)
75 TIGR02194 GlrX_NrdH Glutaredox 98.6 7.5E-08 1.6E-12 56.7 5.1 49 20-68 9-57 (72)
76 cd02976 NrdH NrdH-redoxin (Nrd 98.6 1.2E-07 2.6E-12 55.4 5.5 54 19-72 9-63 (73)
77 KOG3029 Glutathione S-transfer 98.5 2.2E-07 4.7E-12 67.4 5.7 63 17-81 96-158 (370)
78 PF00462 Glutaredoxin: Glutare 98.5 1.5E-07 3.2E-12 53.4 3.4 51 20-70 9-60 (60)
79 TIGR02183 GRXA Glutaredoxin, G 98.5 8.3E-07 1.8E-11 54.2 6.9 66 20-85 10-83 (86)
80 TIGR02189 GlrX-like_plant Glut 98.4 2E-06 4.4E-11 53.8 8.0 62 18-79 16-81 (99)
81 cd03419 GRX_GRXh_1_2_like Glut 98.4 2.8E-06 6E-11 50.9 7.5 63 20-82 10-76 (82)
82 PHA03050 glutaredoxin; Provisi 98.4 3.1E-06 6.8E-11 53.8 7.5 62 17-78 20-88 (108)
83 TIGR02200 GlrX_actino Glutared 98.3 4.2E-06 9E-11 49.4 6.3 61 20-80 10-75 (77)
84 TIGR00365 monothiol glutaredox 98.2 6.4E-06 1.4E-10 51.4 6.9 64 17-80 24-88 (97)
85 TIGR02180 GRX_euk Glutaredoxin 98.2 1.3E-05 2.8E-10 48.1 7.5 64 19-82 8-77 (84)
86 cd03028 GRX_PICOT_like Glutare 98.2 1E-05 2.2E-10 49.8 6.7 64 18-81 21-85 (90)
87 PF10568 Tom37: Outer mitochon 98.2 1.2E-05 2.6E-10 47.3 6.5 55 19-80 13-71 (72)
88 KOG3028 Translocase of outer m 97.9 0.00056 1.2E-08 50.6 12.8 75 3-86 2-77 (313)
89 cd03031 GRX_GRX_like Glutaredo 97.8 0.00015 3.2E-09 48.6 7.6 76 3-81 2-82 (147)
90 PRK10824 glutaredoxin-4; Provi 97.8 0.00011 2.4E-09 47.1 6.6 64 17-80 27-91 (115)
91 PRK12759 bifunctional gluaredo 97.7 0.00012 2.6E-09 57.1 7.0 68 2-78 3-79 (410)
92 cd03201 GST_C_DHAR GST_C famil 97.5 0.00024 5.2E-09 46.0 4.8 57 92-149 4-60 (121)
93 PTZ00062 glutaredoxin; Provisi 97.4 0.00068 1.5E-08 47.9 6.7 63 18-80 126-189 (204)
94 cd03198 GST_C_CLIC GST_C famil 97.4 0.00035 7.5E-09 46.1 4.7 54 96-149 5-74 (134)
95 KOG1752 Glutaredoxin and relat 97.3 0.0027 5.9E-08 40.0 7.7 64 18-81 22-89 (104)
96 PF13410 GST_C_2: Glutathione 97.2 0.00042 9.1E-09 40.0 3.1 31 117-149 5-35 (69)
97 cd03200 GST_C_JTV1 GST_C famil 97.2 0.00077 1.7E-08 41.8 4.1 62 77-149 1-64 (96)
98 PF14497 GST_C_3: Glutathione 96.9 0.0011 2.4E-08 41.1 3.4 34 116-149 33-66 (99)
99 cd03184 GST_C_Omega GST_C fami 96.9 0.0027 5.8E-08 41.0 5.1 37 113-149 27-63 (124)
100 cd03190 GST_C_ECM4_like GST_C 96.9 0.0019 4.1E-08 42.9 4.2 31 117-149 36-66 (142)
101 PRK01655 spxA transcriptional 96.8 0.0018 4E-08 42.5 3.9 33 3-44 2-34 (131)
102 cd03030 GRX_SH3BGR Glutaredoxi 96.8 0.0071 1.5E-07 37.3 6.0 74 3-79 2-80 (92)
103 cd03036 ArsC_like Arsenate Red 96.8 0.0015 3.2E-08 41.7 2.9 26 20-45 9-34 (111)
104 cd03186 GST_C_SspA GST_N famil 96.7 0.0017 3.7E-08 40.6 3.0 31 117-149 34-64 (107)
105 cd03196 GST_C_5 GST_C family, 96.7 0.0038 8.2E-08 39.9 4.5 31 117-149 40-70 (115)
106 cd03210 GST_C_Pi GST_C family, 96.6 0.003 6.6E-08 40.9 3.8 32 118-149 35-67 (126)
107 PF04908 SH3BGR: SH3-binding, 96.6 0.011 2.3E-07 37.0 5.9 76 1-79 1-86 (99)
108 cd02977 ArsC_family Arsenate R 96.6 0.0026 5.5E-08 40.0 3.1 25 20-44 9-33 (105)
109 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0042 9.2E-08 39.8 4.0 33 3-44 2-34 (115)
110 COG0278 Glutaredoxin-related p 96.5 0.019 4.1E-07 35.7 6.3 76 3-82 17-94 (105)
111 PF00043 GST_C: Glutathione S- 96.4 0.0038 8.3E-08 38.0 3.2 31 117-149 27-57 (95)
112 cd03193 GST_C_Metaxin GST_C fa 96.4 0.0044 9.6E-08 37.4 3.2 30 118-149 19-48 (88)
113 PRK13344 spxA transcriptional 96.4 0.0074 1.6E-07 39.7 4.4 34 3-45 2-35 (132)
114 cd03180 GST_C_2 GST_C family, 96.3 0.005 1.1E-07 38.4 3.1 30 118-149 43-72 (110)
115 cd03209 GST_C_Mu GST_C family, 96.3 0.008 1.7E-07 38.6 4.1 30 118-149 35-64 (121)
116 cd03188 GST_C_Beta GST_C famil 96.3 0.0055 1.2E-07 38.5 3.3 30 118-149 43-72 (114)
117 cd02973 TRX_GRX_like Thioredox 96.3 0.014 3.1E-07 33.2 4.8 49 20-71 11-64 (67)
118 cd03189 GST_C_GTT1_like GST_C 96.2 0.005 1.1E-07 39.2 3.1 29 119-149 55-83 (119)
119 PRK12559 transcriptional regul 96.2 0.0083 1.8E-07 39.4 4.1 34 3-45 2-35 (131)
120 cd03191 GST_C_Zeta GST_C famil 96.2 0.0065 1.4E-07 38.8 3.5 30 120-149 46-75 (121)
121 cd03206 GST_C_7 GST_C family, 96.2 0.0068 1.5E-07 37.5 3.2 31 117-149 32-62 (100)
122 cd03177 GST_C_Delta_Epsilon GS 96.1 0.007 1.5E-07 38.6 3.1 33 115-149 35-67 (118)
123 cd03187 GST_C_Phi GST_C family 96.1 0.0063 1.4E-07 38.5 2.8 30 118-149 45-74 (118)
124 cd03208 GST_C_Alpha GST_C fami 96.1 0.0071 1.5E-07 39.9 3.1 28 122-149 43-70 (137)
125 cd03182 GST_C_GTT2_like GST_C 96.0 0.008 1.7E-07 38.0 3.2 31 117-149 48-78 (117)
126 cd03179 GST_C_1 GST_C family, 96.0 0.0097 2.1E-07 36.8 3.4 31 117-149 42-72 (105)
127 TIGR01617 arsC_related transcr 95.9 0.0093 2E-07 38.3 3.2 25 20-44 9-33 (117)
128 cd03185 GST_C_Tau GST_C family 95.9 0.011 2.4E-07 37.9 3.5 31 117-149 34-64 (126)
129 PF05768 DUF836: Glutaredoxin- 95.9 0.032 7E-07 33.3 5.2 55 2-67 1-57 (81)
130 cd03207 GST_C_8 GST_C family, 95.9 0.0086 1.9E-07 37.1 2.8 31 117-149 29-59 (103)
131 cd03178 GST_C_Ure2p_like GST_C 95.8 0.014 3E-07 36.7 3.6 31 117-149 39-69 (113)
132 cd00299 GST_C_family Glutathio 95.8 0.012 2.6E-07 35.7 3.3 31 117-149 35-65 (100)
133 cd03211 GST_C_Metaxin2 GST_C f 95.8 0.018 3.8E-07 37.5 4.1 33 115-149 54-86 (126)
134 cd03202 GST_C_etherase_LigE GS 95.7 0.017 3.6E-07 37.4 3.6 32 116-149 56-87 (124)
135 cd03204 GST_C_GDAP1 GST_C fami 95.6 0.017 3.7E-07 36.9 3.3 33 117-149 28-68 (111)
136 cd03194 GST_C_3 GST_C family, 95.5 0.028 6E-07 35.8 4.0 33 116-149 39-72 (114)
137 cd03181 GST_C_EFB1gamma GST_C 95.5 0.017 3.7E-07 36.9 3.0 31 117-149 39-69 (123)
138 TIGR00412 redox_disulf_2 small 95.4 0.099 2.1E-06 30.8 6.0 56 1-70 1-60 (76)
139 PF13192 Thioredoxin_3: Thiore 95.3 0.066 1.4E-06 31.5 5.0 49 20-72 10-62 (76)
140 cd03192 GST_C_Sigma_like GST_C 95.2 0.023 4.9E-07 35.2 3.0 32 118-149 39-70 (104)
141 cd03035 ArsC_Yffb Arsenate Red 95.2 0.036 7.9E-07 34.9 3.8 27 18-44 7-33 (105)
142 cd03033 ArsC_15kD Arsenate Red 95.2 0.025 5.5E-07 36.2 3.1 26 19-44 9-34 (113)
143 PF11287 DUF3088: Protein of u 95.0 0.15 3.2E-06 32.4 6.1 70 17-86 21-109 (112)
144 cd03212 GST_C_Metaxin1_3 GST_C 94.8 0.038 8.1E-07 36.6 3.3 31 117-149 63-93 (137)
145 cd03203 GST_C_Lambda GST_C fam 94.8 0.034 7.3E-07 35.7 2.9 56 93-149 3-61 (120)
146 COG1393 ArsC Arsenate reductas 94.3 0.1 2.2E-06 33.7 4.3 35 1-44 1-35 (117)
147 PRK10853 putative reductase; P 94.3 0.067 1.4E-06 34.5 3.4 24 20-43 10-33 (118)
148 PRK10026 arsenate reductase; P 94.3 0.061 1.3E-06 35.8 3.3 34 2-44 3-36 (141)
149 cd03183 GST_C_Theta GST_C fami 93.9 0.076 1.6E-06 34.1 3.2 31 118-149 45-75 (126)
150 cd01659 TRX_superfamily Thiore 93.9 0.14 3.1E-06 27.3 3.9 47 19-65 8-59 (69)
151 cd03195 GST_C_4 GST_C family, 93.8 0.11 2.3E-06 33.0 3.7 31 117-149 41-71 (114)
152 TIGR01616 nitro_assoc nitrogen 93.6 0.095 2.1E-06 34.2 3.3 25 19-43 10-34 (126)
153 TIGR00014 arsC arsenate reduct 92.8 0.14 3E-06 32.7 3.0 25 20-44 9-33 (114)
154 KOG0911 Glutaredoxin-related p 92.1 0.54 1.2E-05 33.6 5.4 66 16-81 150-216 (227)
155 cd03034 ArsC_ArsC Arsenate Red 92.0 0.2 4.3E-06 31.9 3.0 25 19-43 8-32 (112)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 91.1 0.82 1.8E-05 27.8 5.0 49 20-71 24-77 (89)
157 COG4545 Glutaredoxin-related p 90.2 1.1 2.4E-05 26.5 4.5 53 18-70 10-76 (85)
158 TIGR00411 redox_disulf_1 small 89.3 1.9 4.1E-05 25.0 5.5 48 20-68 11-62 (82)
159 PF14834 GST_C_4: Glutathione 86.6 0.87 1.9E-05 29.2 2.8 48 97-145 10-69 (117)
160 PF09635 MetRS-N: MetRS-N bind 82.9 2.9 6.3E-05 27.1 4.0 28 59-86 35-64 (122)
161 PHA02125 thioredoxin-like prot 82.8 5.2 0.00011 23.1 4.9 45 19-66 9-53 (75)
162 cd03205 GST_C_6 GST_C family, 81.9 2.1 4.5E-05 26.1 3.1 28 117-149 36-63 (98)
163 PF03960 ArsC: ArsC family; I 81.1 2.2 4.8E-05 26.8 3.1 26 18-43 4-29 (110)
164 PRK15317 alkyl hydroperoxide r 75.3 2.1 4.5E-05 34.6 2.0 63 20-83 128-197 (517)
165 TIGR03140 AhpF alkyl hydropero 74.4 2.1 4.5E-05 34.6 1.8 63 20-83 129-198 (515)
166 TIGR03143 AhpF_homolog putativ 74.1 8.3 0.00018 31.5 5.2 48 20-70 488-540 (555)
167 cd03197 GST_C_mPGES2 GST_C fam 73.9 10 0.00022 25.6 4.7 32 117-149 78-109 (149)
168 KOG2824 Glutaredoxin-related p 71.4 8.3 0.00018 28.6 4.1 58 23-80 150-212 (281)
169 TIGR02681 phage_pRha phage reg 55.8 14 0.00031 23.3 2.6 26 60-85 2-28 (108)
170 PHA03158 hypothetical protein; 54.4 75 0.0016 22.5 7.0 65 68-136 208-272 (273)
171 COG5515 Uncharacterized conser 52.3 11 0.00025 21.2 1.5 27 1-32 1-27 (70)
172 PF06110 DUF953: Eukaryotic pr 50.4 15 0.00033 23.7 2.1 65 10-74 28-106 (119)
173 TIGR01295 PedC_BrcD bacterioci 47.2 74 0.0016 20.3 5.7 50 18-67 33-100 (122)
174 cd02975 PfPDO_like_N Pyrococcu 44.5 46 0.001 20.8 3.7 46 19-65 33-81 (113)
175 KOG4023 Uncharacterized conser 43.4 38 0.00082 21.2 3.0 43 1-46 2-44 (108)
176 cd04911 ACT_AKiii-YclM-BS_1 AC 43.3 37 0.00081 20.0 2.9 23 20-42 15-37 (76)
177 PF13961 DUF4219: Domain of un 42.6 23 0.0005 16.3 1.6 19 17-35 4-22 (27)
178 PF04134 DUF393: Protein of un 39.7 91 0.002 19.2 6.6 65 18-83 5-77 (114)
179 KOG3425 Uncharacterized conser 35.4 1E+02 0.0022 20.1 4.1 70 13-82 38-121 (128)
180 PF09314 DUF1972: Domain of un 34.8 38 0.00082 23.7 2.3 20 66-85 154-173 (185)
181 KOG3029 Glutathione S-transfer 34.4 2.1E+02 0.0045 21.8 6.6 80 69-149 236-318 (370)
182 PRK09266 hypothetical protein; 34.2 59 0.0013 23.7 3.4 57 29-85 200-259 (266)
183 PF00731 AIRC: AIR carboxylase 31.4 67 0.0014 21.7 3.0 30 20-49 13-42 (150)
184 PF13344 Hydrolase_6: Haloacid 27.8 70 0.0015 19.6 2.5 66 21-88 17-82 (101)
185 cd02953 DsbDgamma DsbD gamma f 27.7 1.4E+02 0.0031 17.8 4.3 45 19-64 22-77 (104)
186 COG2176 PolC DNA polymerase II 26.4 1.6E+02 0.0036 27.0 5.1 82 68-149 797-894 (1444)
187 cd02947 TRX_family TRX family; 25.7 1.3E+02 0.0028 16.7 4.6 47 19-68 21-74 (93)
188 TIGR01764 excise DNA binding d 24.6 1E+02 0.0023 15.2 3.4 25 57-81 24-48 (49)
189 PF06953 ArsD: Arsenical resis 23.9 2E+02 0.0043 18.7 4.1 39 30-70 36-83 (123)
190 KOG1147 Glutamyl-tRNA syntheta 23.2 40 0.00086 27.9 0.9 71 67-149 45-117 (712)
191 PF11801 Tom37_C: Tom37 C-term 23.1 1.5E+02 0.0033 20.2 3.7 26 123-148 113-140 (168)
192 TIGR01162 purE phosphoribosyla 21.6 1.7E+02 0.0038 19.9 3.6 29 20-48 11-39 (156)
193 cd02951 SoxW SoxW family; SoxW 20.7 2.3E+02 0.0049 17.6 4.1 10 19-28 25-34 (125)
194 PF08159 NUC153: NUC153 domain 20.5 65 0.0014 15.3 1.0 19 40-58 11-29 (30)
195 cd05295 MDH_like Malate dehydr 20.4 2.2E+02 0.0049 23.0 4.5 70 18-87 2-88 (452)
196 COG3011 Predicted thiol-disulf 20.3 2.8E+02 0.006 18.5 5.6 67 18-84 16-87 (137)
197 cd00449 PLPDE_IV PyridoxaL 5'- 20.1 1.2E+02 0.0027 21.7 2.9 54 29-82 196-254 (256)
198 TIGR03412 iscX_yfhJ FeS assemb 20.0 1.2E+02 0.0025 17.3 2.1 17 70-86 2-18 (63)
No 1
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=6.8e-33 Score=196.71 Aligned_cols=149 Identities=75% Similarity=1.240 Sum_probs=128.9
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
|++|||||+|-++.+.++.||||+|++++|+++|++|+.+.+++..++++|++.||.|+||+|+++|.+|+||.+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CceehhhhccCCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 89999999998889999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HhhCCCCCCCCcHHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 81 EEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++++++..+.++.+++++..+++..+..+.......+...+.+.+.|+.+|++|+.++++|++|+++|+
T Consensus 81 ~~~~~~~~l~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ 149 (213)
T PLN02378 81 EEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSA 149 (213)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCch
Confidence 999987666666778887777776655554443333455567888999999999865568999999985
No 2
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.5e-29 Score=184.44 Aligned_cols=146 Identities=64% Similarity=1.183 Sum_probs=127.7
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
+++++|++......++.||||+|++++|+++|++|+.+.+++.+++++|++.||.|+||+|+++|.+|+||.+|++||++
T Consensus 56 ~~~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e 135 (265)
T PLN02817 56 LEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE 135 (265)
T ss_pred HHHHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 68999998877777999999999999999999999999999988889999999999999999988999999999999999
Q ss_pred hCCCCCCCCcHHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 83 KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 83 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+++++.+.++.+++++..|++..+..++......+...+.+.+.|+.||++|+++ ++||+|+++|+
T Consensus 136 ~~p~~~L~~~~era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~Sl 201 (265)
T PLN02817 136 KYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISA 201 (265)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCH
Confidence 9998777788889999888887776665544444444567888899999999863 58999999985
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.96 E-value=5.4e-28 Score=173.14 Aligned_cols=146 Identities=29% Similarity=0.550 Sum_probs=114.3
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.++||||++ .+...++.||+|+|+|++|+++|++|+.+.+++..++++|++.||.|++|+|+++|.+|+||.+|++||+
T Consensus 2 ~~el~~ka~-~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 2 EIELFVKAG-SDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred ceEEEEecC-CCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 479999997 5678899999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhCCC---CCCCCcH--HHHhhccchhHHHHHhhccCCC--ChhHHHHHHHHHHHHHHHHhhC----------------C
Q 032004 82 EKYPE---PSLTNPP--EFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH----------------G 138 (149)
Q Consensus 82 ~~~~~---~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~le~~L~~~----------------~ 138 (149)
++++. +.+.|.. .++. ...++..+..+...... .++..+.+.+.|+.||+.|++. +
T Consensus 81 e~~~~~~~p~l~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~ 159 (236)
T TIGR00862 81 ETLCPPRYPKLSPKHPESNTA-GLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSR 159 (236)
T ss_pred HHcCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 99975 2343322 2221 12244444444332221 2344556889999999999741 3
Q ss_pred CCcccCCCCCC
Q 032004 139 GPFIAGEKVNA 149 (149)
Q Consensus 139 ~~yl~G~~~sl 149 (149)
++||.|+++|+
T Consensus 160 ~~f~~Gd~~tl 170 (236)
T TIGR00862 160 RKFLDGDELTL 170 (236)
T ss_pred CCcccCCccch
Confidence 59999999985
No 4
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.95 E-value=1.8e-26 Score=163.51 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=105.7
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCCCCCc--H
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNP--P 93 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~l~~~--~ 93 (149)
....||+|+|+|++|+++|++|+.+.++...++++|++.||.|+||+|+++|.+|+||.||++||+++++...|+|. .
T Consensus 15 ~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~ 94 (211)
T PRK09481 15 SGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPV 94 (211)
T ss_pred CCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHH
Confidence 34459999999999999999999999998777889999999999999999999999999999999999998778863 4
Q ss_pred HHHhhccchhHH---HHHhh---ccCC--CChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 94 EFASLGSKIFPS---FVNFL---KSKD--PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 94 ~~~~~~~~~~~~---~~~~~---~~~~--~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+++++..|+... +.... .... ..+...+.+...++.+|++|+++ +||+|+++|+
T Consensus 95 ~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~G~~~t~ 156 (211)
T PRK09481 95 ARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEK--PYFMSEEFSL 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCccH
Confidence 667766665431 22111 1111 12345567888899999999775 9999999985
No 5
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.94 E-value=1.2e-26 Score=142.67 Aligned_cols=85 Identities=26% Similarity=0.525 Sum_probs=80.6
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.+|||+|+|+++.+ ++.||||+|+|++|+++|++|+.+.+++.+++++|++.||.|++|+|+++|.+|+||.+|++||+
T Consensus 5 ~~el~vka~~~~~~-~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGES-IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCC-CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 47999999988777 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCC
Q 032004 82 EKYPEP 87 (149)
Q Consensus 82 ~~~~~~ 87 (149)
++++.+
T Consensus 84 e~~~~~ 89 (91)
T cd03061 84 ETLCPP 89 (91)
T ss_pred HHccCC
Confidence 998754
No 6
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.2e-25 Score=152.86 Aligned_cols=149 Identities=53% Similarity=0.950 Sum_probs=134.3
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
|.++|+|||++..++.+|.||||+|+.+.|.++|++|..+.|++..+++||+++.|.+++|+|..++.+++||..|.++|
T Consensus 2 p~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 2 PEIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCCC--cHHHHhhccchhHHHHHhhccC-C-CChhHHHHHHHHHHHHHHHHhh-CCCCcccCCCCCC
Q 032004 81 EEKYPEPSLTN--PPEFASLGSKIFPSFVNFLKSK-D-PNDGTEQALLEELKALDEHLKT-HGGPFIAGEKVNA 149 (149)
Q Consensus 81 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~l~~le~~L~~-~~~~yl~G~~~sl 149 (149)
+++++.+.+.. +.+.+.+-..++..|..++... + ..+..+..+...|..||++|+. +.++|+.||++|+
T Consensus 82 ee~l~~p~~~~~~~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~ 155 (221)
T KOG1422|consen 82 EEKLPPPKLPTLAPPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTL 155 (221)
T ss_pred HHhcCCCCCcccCCHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeee
Confidence 99999876543 6778888888898988886443 3 4467788899999999999997 5689999999985
No 7
>PLN02473 glutathione S-transferase
Probab=99.92 E-value=2.4e-24 Score=152.76 Aligned_cols=138 Identities=20% Similarity=0.322 Sum_probs=105.2
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~ 77 (149)
|+|+||. +. .||+|+|++++|+++|++|+.+.++..+ ..++|++.||.|+||+|+++|.+|+||.+|+
T Consensus 1 ~~~kLy~--~~-------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~ 71 (214)
T PLN02473 1 MVVKVYG--QI-------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIA 71 (214)
T ss_pred CceEEec--CC-------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHH
Confidence 7899997 32 2788999999999999999999888653 5678999999999999999999999999999
Q ss_pred HHHHhhCCCC--CCCCc--HHHHhhccchhH---HH----H-----Hhhcc--CCC-C----hhHHHHHHHHHHHHHHHH
Q 032004 78 RIIEEKYPEP--SLTNP--PEFASLGSKIFP---SF----V-----NFLKS--KDP-N----DGTEQALLEELKALDEHL 134 (149)
Q Consensus 78 ~yl~~~~~~~--~l~~~--~~~~~~~~~~~~---~~----~-----~~~~~--~~~-~----~~~~~~l~~~l~~le~~L 134 (149)
+||++++++. .|+|. .+++++..|+.. .+ . ..... ... . +.....+.+.++.+|++|
T Consensus 72 ~YL~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 151 (214)
T PLN02473 72 RYYATKYADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRL 151 (214)
T ss_pred HHHHHHcCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999743 57764 456666665421 11 0 11111 111 1 224456788899999999
Q ss_pred hhCCCCcccCCCCCC
Q 032004 135 KTHGGPFIAGEKVNA 149 (149)
Q Consensus 135 ~~~~~~yl~G~~~sl 149 (149)
+++ +|++|+++|+
T Consensus 152 ~~~--~~l~Gd~~t~ 164 (214)
T PLN02473 152 ATN--RYLGGDEFTL 164 (214)
T ss_pred ccC--CcccCCCCCH
Confidence 875 8999999985
No 8
>PRK15113 glutathione S-transferase; Provisional
Probab=99.92 E-value=6.1e-24 Score=150.87 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=101.8
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCC---CCC-
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS---LTN- 91 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~---l~~- 91 (149)
.||+|+|++++|+++|++|+.+.+++.+ ..++|++.||.|+||+|+++|.+|+||.+|++||+++++++. ++|
T Consensus 15 ~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~ 94 (214)
T PRK15113 15 FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPA 94 (214)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCC
Confidence 4999999999999999999999998765 457899999999999999999999999999999999998765 877
Q ss_pred -cHHHHhhccchhH---HHHHh---------hcc---CCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 92 -PPEFASLGSKIFP---SFVNF---------LKS---KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 92 -~~~~~~~~~~~~~---~~~~~---------~~~---~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+.+++++..|+.. .+... ... ....+...+.+.+.++.+|++|++. +.|++|+ +|+
T Consensus 95 ~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~-~Tl 166 (214)
T PRK15113 95 DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGE-WCI 166 (214)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCC-ccH
Confidence 3467777666432 22211 111 1122556677889999999999863 4799996 985
No 9
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-24 Score=150.98 Aligned_cols=134 Identities=27% Similarity=0.399 Sum_probs=108.4
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhC-CCCCccEEEeCCeeeecHHHHHHHHHhhCC-CCCCCC
Q 032004 14 PDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-PEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPSLTN 91 (149)
Q Consensus 14 ~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~-p~~~~P~L~~~~~~i~es~~I~~yl~~~~~-~~~l~~ 91 (149)
+....+|||++|++++|+++||+|+.+..++.++++++++.| +.+++|+|+++|..|+||..|++||++.++ ++.++|
T Consensus 12 L~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP 91 (231)
T KOG0406|consen 12 LLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILP 91 (231)
T ss_pred EEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCC
Confidence 344557999999999999999999999999999999999999 579999999999999999999999999999 588998
Q ss_pred cH--HHHhhccchhH-------HHHHhhc-cC-CCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCC
Q 032004 92 PP--EFASLGSKIFP-------SFVNFLK-SK-DPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVN 148 (149)
Q Consensus 92 ~~--~~~~~~~~~~~-------~~~~~~~-~~-~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~s 148 (149)
.+ +|++..-|... ....+.. .. +..+...+.+.+.|+.||+.|.. +.+||.|++++
T Consensus 92 ~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G 158 (231)
T KOG0406|consen 92 SDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIG 158 (231)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcC
Confidence 54 66665555322 1112222 22 33466778899999999999993 46999999876
No 10
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-24 Score=142.62 Aligned_cols=127 Identities=30% Similarity=0.486 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCC----chhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCCCCCcHH--HH
Q 032004 23 SQRALLTLEEKKVPYKRHLINISDK----PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPE--FA 96 (149)
Q Consensus 23 ~~~vr~~L~~~gi~~~~~~v~~~~~----~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~l~~~~~--~~ 96 (149)
++|||++|+.+||+|+.+.+++.+. ..+|++.||.++||+|++||.+|+||.||++||++.+|++.|+|.+. |+
T Consensus 17 swRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~KRA 96 (217)
T KOG0868|consen 17 SWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHKRA 96 (217)
T ss_pred hHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 7899999999999999999997653 45899999999999999999999999999999999999999998552 32
Q ss_pred hhc-------cchhH----HHHHhhccCCC---ChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 97 SLG-------SKIFP----SFVNFLKSKDP---NDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 97 ~~~-------~~~~~----~~~~~~~~~~~---~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
... .-+++ .+..++..+.. ..-+...+.+.|.+||+.|..+.|+|.+||++|+
T Consensus 97 ~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevti 163 (217)
T KOG0868|consen 97 KARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTI 163 (217)
T ss_pred HHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeeh
Confidence 211 11111 22333333333 2445667889999999999999999999999885
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.91 E-value=1.4e-23 Score=148.29 Aligned_cols=133 Identities=23% Similarity=0.407 Sum_probs=102.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCC----CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCCCCC-
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTN- 91 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~l~~- 91 (149)
...||+|+|+|++|+++|++|+.+.++... ..++|++.||.|++|+|+++|.+|+||.+|++||+++++..+++|
T Consensus 5 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~ 84 (210)
T TIGR01262 5 YWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPA 84 (210)
T ss_pred CCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCC
Confidence 445899999999999999999999998632 357899999999999999999999999999999999998777876
Q ss_pred -cHHHHhhccchhHH-----------HHHhhccC-CC--C---hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 92 -PPEFASLGSKIFPS-----------FVNFLKSK-DP--N---DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 92 -~~~~~~~~~~~~~~-----------~~~~~~~~-~~--~---~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
..+++++..|+... +..+.... .. . +...+.+.+.|+.||++|++++++||+|+++|+
T Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 85 DPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 34666666653221 11111111 11 1 223456889999999999976668999999985
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-23 Score=148.79 Aligned_cols=129 Identities=28% Similarity=0.474 Sum_probs=101.1
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC--CchhhhhhCCCCCccEEEeCCe-eeecHHHHHHHHHhhCCCCCCCCcH--
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDK-WVADSDVIVRIIEEKYPEPSLTNPP-- 93 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~P~L~~~~~-~i~es~~I~~yl~~~~~~~~l~~~~-- 93 (149)
.||+|.|++++|.++|++|+.+.++... ..++|++.||.|+||+|+++|. +|+||.+|++||+++||++.++|.+
T Consensus 8 ~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~ 87 (211)
T COG0625 8 TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPL 87 (211)
T ss_pred CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCch
Confidence 3799999999999999999999999874 6789999999999999998765 8999999999999999977677633
Q ss_pred ---HHHhhccchhHH-------HHHhhccC---------CCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 94 ---EFASLGSKIFPS-------FVNFLKSK---------DPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 94 ---~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+++.+..|+... +....... ...+...+.+...++.+|+.|+++ +|++|+++|+
T Consensus 88 ~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~ti 160 (211)
T COG0625 88 ARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG--PYLAGDRFTI 160 (211)
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCCCH
Confidence 555555554322 11111110 011345567888999999999986 9999999985
No 13
>PLN02395 glutathione S-transferase
Probab=99.90 E-value=4.1e-23 Score=146.48 Aligned_cols=137 Identities=26% Similarity=0.356 Sum_probs=104.0
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCC---CCchhhhhhCCCCCccEEEeCCeeeecHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~ 77 (149)
|+++||.-. +++++|++++|+++|++|+.+.++.. ..+++|++.||.|+||+|+++|.+|+||.+|+
T Consensus 1 ~~~~ly~~~----------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~ 70 (215)
T PLN02395 1 MVLKVYGPA----------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIM 70 (215)
T ss_pred CeEEEEcCC----------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHH
Confidence 788888722 23589999999999999999998875 34678999999999999999999999999999
Q ss_pred HHHHhhCCC--CCCCCc--HHHHhhccchhH-------HHHHh----hc-----cCCC---ChhHHHHHHHHHHHHHHHH
Q 032004 78 RIIEEKYPE--PSLTNP--PEFASLGSKIFP-------SFVNF----LK-----SKDP---NDGTEQALLEELKALDEHL 134 (149)
Q Consensus 78 ~yl~~~~~~--~~l~~~--~~~~~~~~~~~~-------~~~~~----~~-----~~~~---~~~~~~~l~~~l~~le~~L 134 (149)
+||+++++. +.++|. .+++++..|+.. .+... .. .+.. .....+.+.+.++.||++|
T Consensus 71 ~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 150 (215)
T PLN02395 71 RYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARL 150 (215)
T ss_pred HHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999975 257763 466666666432 11111 11 0111 1234566788899999999
Q ss_pred hhCCCCcccCCCCCC
Q 032004 135 KTHGGPFIAGEKVNA 149 (149)
Q Consensus 135 ~~~~~~yl~G~~~sl 149 (149)
+++ +|++|+++|+
T Consensus 151 ~~~--~~l~G~~~s~ 163 (215)
T PLN02395 151 SKS--KYLAGDFVSL 163 (215)
T ss_pred cCC--ccccCCCcCH
Confidence 876 8999999985
No 14
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.90 E-value=5.8e-23 Score=145.87 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCC---chhhhhhCCCCCccEEEe-----CC--eeeecHHHHHHHHHhhCCCCCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDK---PQWFMEISPEGKVPVVKF-----DD--KWVADSDVIVRIIEEKYPEPSL 89 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~P~L~~-----~~--~~i~es~~I~~yl~~~~~~~~l 89 (149)
+++|+||+++|+++|++|+.+.+++..+ .++|++.||.|+||+|++ +| .+|+||.||++||+++++ .+
T Consensus 9 ~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~--~l 86 (215)
T PRK13972 9 TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG--LF 86 (215)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcC--CC
Confidence 5779999999999999999999987543 578999999999999997 45 479999999999999986 24
Q ss_pred CC--cHHHHhhccchhHH---HHHhh------cc--CC-C---ChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 90 TN--PPEFASLGSKIFPS---FVNFL------KS--KD-P---NDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 90 ~~--~~~~~~~~~~~~~~---~~~~~------~~--~~-~---~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.| +.+++++..|+... +...+ .. +. . .+.....+.+.++.+|++|+.+ +||+|+++|+
T Consensus 87 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~ 161 (215)
T PRK13972 87 LSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS--PWLGGENYSI 161 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC--ccccCCCCCH
Confidence 44 45778877776432 11111 00 11 1 1234456788899999999876 8999999985
No 15
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.90 E-value=7.2e-23 Score=143.77 Aligned_cols=127 Identities=16% Similarity=0.289 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCCCceEEecCCCC----CchhhhhhCCCCCccEEE-eCCeeeecHHHHHHHHHhhCCCCCCC-C--c
Q 032004 21 PFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLT-N--P 92 (149)
Q Consensus 21 ~~~~~vr~~L~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~P~L~-~~~~~i~es~~I~~yl~~~~~~~~l~-~--~ 92 (149)
++++|++++|+++|++|+.+.+++.+ ..++|++.||.|++|+|+ ++|.+|+||.+|++||++++++..++ | +
T Consensus 9 s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~ 88 (201)
T PRK10542 9 ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGS 88 (201)
T ss_pred HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCc
Confidence 46899999999999999999998754 347899999999999998 57899999999999999999877766 3 3
Q ss_pred HHHHhhccchhHH---HH----HhhccCCCC---hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 93 PEFASLGSKIFPS---FV----NFLKSKDPN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 93 ~~~~~~~~~~~~~---~~----~~~~~~~~~---~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+++++..|+... +. ......... +...+.+.+.|+.+|+.|+.+ +||+|+++|+
T Consensus 89 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~ 153 (201)
T PRK10542 89 LSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE--QWICGQRFTI 153 (201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC--CeeeCCCCcH
Confidence 4676666665432 22 222211111 234567888999999999875 8999999985
No 16
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.88 E-value=1.4e-21 Score=137.47 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEE-eCCeeeecHHHHHHHHHhhCCCCCCCCcH--H
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPP--E 94 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~-~~~~~i~es~~I~~yl~~~~~~~~l~~~~--~ 94 (149)
..||+++|+|++|+++|++|+.+.++...+.+++.+.||.|++|+|+ ++|.+|+||.+|++||++++++..|+|.+ +
T Consensus 7 ~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~ 86 (202)
T PRK10357 7 YTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLA 86 (202)
T ss_pred CCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 34999999999999999999999988877777888999999999998 67899999999999999998876788643 4
Q ss_pred HHhhccchhH---HHHH-------hhccCC-CC----hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 95 FASLGSKIFP---SFVN-------FLKSKD-PN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 95 ~~~~~~~~~~---~~~~-------~~~~~~-~~----~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++++..|..- .+.. ...... .. +...+.+.+.|+.+|++|++. + ++|+++|+
T Consensus 87 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~-l~Gd~~t~ 153 (202)
T PRK10357 87 ALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDG--T-LKTDTVNL 153 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccC--c-ccCCCcCH
Confidence 5555444221 1110 111111 11 234567888899999999864 6 99999985
No 17
>PRK11752 putative S-transferase; Provisional
Probab=99.87 E-value=3.2e-21 Score=140.93 Aligned_cols=126 Identities=24% Similarity=0.321 Sum_probs=97.1
Q ss_pred ChhHHHHHHHHHhc------CCCceEEecCCCC---CchhhhhhCCCCCccEEEeC----CeeeecHHHHHHHHHhhCCC
Q 032004 20 CPFSQRALLTLEEK------KVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKYPE 86 (149)
Q Consensus 20 ~~~~~~vr~~L~~~------gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~----~~~i~es~~I~~yl~~~~~~ 86 (149)
||+|+||+++|+++ |++|+.+.+++.. ..++|++.||.|+||+|+++ |.+|+||.+|++||+++++.
T Consensus 52 s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~ 131 (264)
T PRK11752 52 TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA 131 (264)
T ss_pred CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC
Confidence 89999999999997 8999999988754 35789999999999999984 36999999999999999973
Q ss_pred CCCCC--cHHHHhhccchhHHH----------HHhh-ccCCCC----hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 87 PSLTN--PPEFASLGSKIFPSF----------VNFL-KSKDPN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 87 ~~l~~--~~~~~~~~~~~~~~~----------~~~~-~~~~~~----~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
|+| +.+++++..|+.... .... ..++.. +...+.+.+.|+.||++|+++ +||+|+++|+
T Consensus 132 --L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~--~fl~Gd~~Tl 207 (264)
T PRK11752 132 --FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH--EYIAGDEYTI 207 (264)
T ss_pred --cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCccCH
Confidence 776 346777777754311 0111 112211 233456788899999999875 8999999985
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.86 E-value=3.1e-21 Score=136.31 Aligned_cols=127 Identities=20% Similarity=0.343 Sum_probs=92.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEE-EeCCeeeecHHHHHHHHHhhCCCCCCCCcHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVV-KFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFA 96 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L-~~~~~~i~es~~I~~yl~~~~~~~~l~~~~~~~ 96 (149)
..||+|+|+|++|+++|++|+.+.++...... -.+.+|.++||+| .++|.+|+||.+|++||+++|+++.+. ..+++
T Consensus 7 ~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~-~~~~~ 84 (210)
T PRK10387 7 DHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT-GKRSP 84 (210)
T ss_pred CCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-CcccH
Confidence 44999999999999999999998886543222 2578899999999 578999999999999999999865443 23455
Q ss_pred hhccchhHHH---HHh----hcc---CC--------------------------CChhHHHHHHHHHHHHHHHHhhCCCC
Q 032004 97 SLGSKIFPSF---VNF----LKS---KD--------------------------PNDGTEQALLEELKALDEHLKTHGGP 140 (149)
Q Consensus 97 ~~~~~~~~~~---~~~----~~~---~~--------------------------~~~~~~~~l~~~l~~le~~L~~~~~~ 140 (149)
.+..|+.... ... ... +. ..++..+.+.+.|+.+|++|++ +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~ 161 (210)
T PRK10387 85 AIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK---P 161 (210)
T ss_pred HHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC---c
Confidence 5555543221 100 000 00 0123456788889999999963 8
Q ss_pred cccCCCCCC
Q 032004 141 FIAGEKVNA 149 (149)
Q Consensus 141 yl~G~~~sl 149 (149)
||+|+++|+
T Consensus 162 ~l~G~~~s~ 170 (210)
T PRK10387 162 NAVNGELST 170 (210)
T ss_pred cccCCCCCH
Confidence 999999985
No 19
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.86 E-value=1.8e-21 Score=137.40 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=91.6
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhh--------hhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCC
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFM--------EISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP 87 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~ 87 (149)
.++.++.++++|++|+++|++|+.+.++.. . ++|+ +.||+|++|+|+++|.+|+||.||++||+++++.
T Consensus 9 y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~-~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~~- 85 (205)
T PTZ00057 9 YFDARGKAELIRLIFAYLGIEYTDKRFGEN-G-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYKI- 85 (205)
T ss_pred ecCCCcchHHHHHHHHHcCCCeEEEecccc-c-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcCC-
Confidence 334577899999999999999999977532 1 2332 4799999999999999999999999999999973
Q ss_pred CCCCcHHHHhhccchhHH-HHHh----hc----cCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 88 SLTNPPEFASLGSKIFPS-FVNF----LK----SKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~-~~~~----~~----~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+..+++++..|+... +..+ .. .....+...+.+.+.++.||++|++++++||+|+++|+
T Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~ 154 (205)
T PTZ00057 86 --CGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTY 154 (205)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccH
Confidence 2333444433332221 1111 10 00111334567889999999999876668999999985
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.85 E-value=3e-20 Score=131.55 Aligned_cols=129 Identities=19% Similarity=0.312 Sum_probs=91.3
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEE-eCCeeeecHHHHHHHHHhhCCCCCCCCcHH
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPE 94 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~-~~~~~i~es~~I~~yl~~~~~~~~l~~~~~ 94 (149)
....||+|+|+|++|+++|++|+.+.+..... ....+.||.|++|+|+ ++|.+|+||.+|++||+++|+.+.+ ++..
T Consensus 4 ~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~-~~~~ 81 (209)
T TIGR02182 4 IYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLL-TGKV 81 (209)
T ss_pred cCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccC-CCCC
Confidence 34569999999999999999999887654332 2347899999999998 7889999999999999999986433 3333
Q ss_pred HHhhccchhH-------HHHHhhcc------------------C--C---------CChhHHHHHHHHHHHHHHHHhhCC
Q 032004 95 FASLGSKIFP-------SFVNFLKS------------------K--D---------PNDGTEQALLEELKALDEHLKTHG 138 (149)
Q Consensus 95 ~~~~~~~~~~-------~~~~~~~~------------------~--~---------~~~~~~~~l~~~l~~le~~L~~~~ 138 (149)
++++..|+.. .+...+.. + . ..++..+.+++.|+.+|++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~- 160 (209)
T TIGR02182 82 SPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGP- 160 (209)
T ss_pred hHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCc-
Confidence 4444444322 11111100 0 0 00244567888999999999887
Q ss_pred CCcccCCCCCC
Q 032004 139 GPFIAGEKVNA 149 (149)
Q Consensus 139 ~~yl~G~~~sl 149 (149)
+|+.| ++|+
T Consensus 161 -~~l~g-~~Ti 169 (209)
T TIGR02182 161 -NAVNG-ELSE 169 (209)
T ss_pred -cccCC-CCCH
Confidence 99854 5885
No 21
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.6e-20 Score=133.25 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=108.3
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~ 77 (149)
|+|.||.-. .++.|+++.+.+.++|++|+.+.+++.. .+++|++.||.++||+|+|+|..++||.||+
T Consensus 1 ~~~~ly~~~---------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~ 71 (226)
T KOG0867|consen 1 MKLKLYGHL---------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAIL 71 (226)
T ss_pred CCceEeecC---------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHH
Confidence 567777732 2788999999999999999999777553 5789999999999999999999999999999
Q ss_pred HHHHhhCC-CCC-CCCc--HHHHhhccchhHHHHHhh--------------cc---CCCChhHHHHHHHHHHHHHHHHhh
Q 032004 78 RIIEEKYP-EPS-LTNP--PEFASLGSKIFPSFVNFL--------------KS---KDPNDGTEQALLEELKALDEHLKT 136 (149)
Q Consensus 78 ~yl~~~~~-~~~-l~~~--~~~~~~~~~~~~~~~~~~--------------~~---~~~~~~~~~~l~~~l~~le~~L~~ 136 (149)
.||.++|+ ... ++|. ..++.+..|++.....+. .. ..........+.+.++.+|+.|.+
T Consensus 72 ~Yl~~ky~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 151 (226)
T KOG0867|consen 72 RYLAEKYGPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT 151 (226)
T ss_pred HHHHHHcCCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc
Confidence 99999997 233 6653 467777777644211111 10 111256678899999999999999
Q ss_pred CCCCcccCCCCCC
Q 032004 137 HGGPFIAGEKVNA 149 (149)
Q Consensus 137 ~~~~yl~G~~~sl 149 (149)
+ .|++|+++|+
T Consensus 152 ~--~yl~g~~~tl 162 (226)
T KOG0867|consen 152 Q--VYLAGDQLTL 162 (226)
T ss_pred C--CcccCCcccH
Confidence 7 9999999985
No 22
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=1.6e-20 Score=112.41 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=66.7
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCC
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP 87 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~ 87 (149)
...||||+|+|++|+++|++|+.+.++...+.+++.+.+|.+++|+|+++|.+++||.+|++||+++|+++
T Consensus 4 ~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 4 FPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp ETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 34599999999999999999999999988888999999999999999999999999999999999999864
No 23
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=3e-19 Score=106.06 Aligned_cols=67 Identities=25% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhC
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~ 84 (149)
..||+|+|++++|+++|++|+.+.++.....++|++.||.|++|+|+++|..++||.+|++||++++
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 7 PDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 3499999999999999999999999987777899999999999999999999999999999999875
No 24
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.79 E-value=4.5e-19 Score=104.73 Aligned_cols=65 Identities=35% Similarity=0.652 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCC----CCCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHHHhh
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINI----SDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEEK 83 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl~~~ 83 (149)
+|||++|++++|+++|++|+...+.. ..++++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 234579999999999999998 789999999999999874
No 25
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.79 E-value=4.4e-19 Score=105.57 Aligned_cols=64 Identities=27% Similarity=0.484 Sum_probs=58.1
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
..|++|+|+|++|+++|++|+.+.++... +.++|++.||.|++|+|+++|.+++||.+|++||+
T Consensus 7 ~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 7 TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 34899999999999999999999988743 46789999999999999999999999999999984
No 26
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.79 E-value=6.7e-19 Score=105.01 Aligned_cols=67 Identities=28% Similarity=0.472 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCC-CCccEEEeCCeeeecHHHHHHHHHhhC
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPE-GKVPVVKFDDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~~P~L~~~~~~i~es~~I~~yl~~~~ 84 (149)
..||+|+|+|++|+++|++|+.+.++...+.++|++.||. +++|+|+++|.+++||.+|++||++++
T Consensus 7 ~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 7 WASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 4599999999999999999999998887777889999996 999999999999999999999999864
No 27
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=8.5e-19 Score=105.40 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEe--CCeeeecHHHHHHHHHhhC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKF--DDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~--~~~~i~es~~I~~yl~~~~ 84 (149)
.||||+|++++|.++|++|+.+.+.... ..+++++.||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 9 ~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 9 GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 4999999999999999999999886443 3578999999999999987 3689999999999999875
No 28
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=6.8e-19 Score=104.20 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=60.0
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeC-CeeeecHHHHHHHH
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRII 80 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~-~~~i~es~~I~~yl 80 (149)
....||||+|++++|+++|++|+.+.++...+.++|++.||.|++|+|+++ |..++||.+|++|+
T Consensus 5 ~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 5 SFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 345699999999999999999999999988777899999999999999985 89999999999996
No 29
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.77 E-value=2e-18 Score=103.36 Aligned_cols=65 Identities=29% Similarity=0.412 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhh
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~ 83 (149)
.||+|+|+|++|+++|++|+.+.++... ..++|.+.||.|++|+|+++|..++||.+|++||+++
T Consensus 9 ~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 9 MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 4999999999999999999999888653 4578999999999999999999999999999999863
No 30
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.77 E-value=3e-18 Score=104.61 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=66.6
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCc---hhhhhhCCCCCccEEEeC-CeeeecHHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKP---QWFMEISPEGKVPVVKFD-DKWVADSDVIVR 78 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~P~L~~~-~~~i~es~~I~~ 78 (149)
++||.+++.. .....||+|+|+|++|.++|++|+.+.++..... +++ +.||.+++|+|+++ |..++||.+|++
T Consensus 1 ~~~~~~~~~~--~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~ 77 (84)
T cd03038 1 ITLYDLAGKD--PVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAE 77 (84)
T ss_pred CeeEeccCCC--CCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHH
Confidence 4677766443 2367899999999999999999999988865432 344 78999999999998 899999999999
Q ss_pred HHHhhCC
Q 032004 79 IIEEKYP 85 (149)
Q Consensus 79 yl~~~~~ 85 (149)
||+++|+
T Consensus 78 yL~~~~p 84 (84)
T cd03038 78 YLEEAYP 84 (84)
T ss_pred HHHHhCc
Confidence 9999875
No 31
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.76 E-value=2.5e-18 Score=102.39 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
+.||+|++++++|+++|++|+.+.+++.. ..++|++.||.|++|+|+++|.+++||.+|++||++
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 7 PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 34999999999999999999999998654 357899999999999999999999999999999974
No 32
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=5.2e-18 Score=104.71 Aligned_cols=65 Identities=42% Similarity=0.780 Sum_probs=59.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeC-CeeeecHHHHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIE 81 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~-~~~i~es~~I~~yl~ 81 (149)
...||||+|++++|+++|++|+.+.++.....++|.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 44599999999999999999999999887766789999999999999976 899999999999985
No 33
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=8.7e-18 Score=101.85 Aligned_cols=67 Identities=31% Similarity=0.525 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCC---CCchhhhhhCCCCCccEEEeC---CeeeecHHHHHHHHHhhCCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFD---DKWVADSDVIVRIIEEKYPE 86 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~P~L~~~---~~~i~es~~I~~yl~~~~~~ 86 (149)
+|+|+|+|++|+++|++|+.+.+++. ...++|++.||.+++|+|+++ |..|+||.+|++||++++++
T Consensus 9 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~~ 81 (81)
T cd03048 9 TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYDK 81 (81)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhCC
Confidence 58899999999999999999999864 246789999999999999987 78999999999999999873
No 34
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=8.9e-18 Score=99.95 Aligned_cols=67 Identities=27% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceEEecCCCC--CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 15 ~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
++.+.||+|+|+|++|+++|++|+.+.++... ..++|++.||.|++|+|+++|.+++||.+|++||.
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 45667999999999999999999999998754 45789999999999999999999999999999983
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.74 E-value=1.2e-17 Score=100.03 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=60.8
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhC
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~ 84 (149)
.+.|++|++++++|+++|++|+.+.++... ..++|.+.||.|++|+|+++|..++||.+|++||+++|
T Consensus 6 ~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 6 DLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 345899999999999999999999998654 34689999999999999999999999999999999865
No 36
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.74 E-value=5.8e-18 Score=100.76 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
.|++|+++|++|+++|++|+.+.++.....+++++.||.|++|+|+++|..++||.+|++||++
T Consensus 9 ~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 9 VRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 3888999999999999999999998755556799999999999999999999999999999976
No 37
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.73 E-value=1.4e-17 Score=99.51 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceEEecCCC--CCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHHHh
Q 032004 15 DILGDCPFSQRALLTLEEKKVPYKRHLINIS--DKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEE 82 (149)
Q Consensus 15 ~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl~~ 82 (149)
...+.|++|+++|++|+++|++|+.+.++.. ...++|++.||.|++|+|++ +|.+|+||.+|++||++
T Consensus 4 y~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 4 YTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred ecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 3445689999999999999999999999875 35688999999999999997 58899999999999975
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.5e-17 Score=98.67 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=58.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.+.||+|+++|++|+++|++|+.+.+++.. ..++|++.||.+++|+|+++|..++||.+|++||+
T Consensus 6 ~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 6 FPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 345999999999999999999999998643 46789999999999999999999999999999983
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.7e-17 Score=98.58 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHHh--cCCCceEEecCCCCCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEE--KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl~ 81 (149)
..||+|+|+|++|++ +|++|+.+.++...+.++|++.||.+++|+|++ +|..++||.+|++||+
T Consensus 7 ~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 7 PTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 459999999999999 889999999987777789999999999999984 7899999999999985
No 40
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.72 E-value=3.1e-17 Score=98.10 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhcCCCceEEecCCC---CCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCC
Q 032004 21 PFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 21 ~~~~~vr~~L~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~ 85 (149)
++++|+|++|+++|++|+.+.++.. .+.++|++.||.+++|+|+++|..++||.+|++||+++++
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 4689999999999999999998864 3568899999999999999999999999999999999875
No 41
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.72 E-value=5.5e-17 Score=96.98 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=61.4
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
++||.... .......||+|+|++++|+++|++|+.+.++. .+.+|.|++|+|+++|.+++||.+|++||++
T Consensus 2 ~~L~~~~~--~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPR--AFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCC--CCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 35666332 22334579999999999999999999987764 2689999999999999999999999999999
Q ss_pred hCC
Q 032004 83 KYP 85 (149)
Q Consensus 83 ~~~ 85 (149)
+|+
T Consensus 73 ~~~ 75 (75)
T cd03080 73 KYG 75 (75)
T ss_pred HcC
Confidence 875
No 42
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.8e-17 Score=112.35 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCCCC--Cc
Q 032004 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLT--NP 92 (149)
Q Consensus 15 ~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~l~--~~ 92 (149)
+.++..-.+.-+|++++.+|++||+++++....-...+...|+||+|+|..||..|.||.||++||+++|+ +. .+
T Consensus 7 ~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g---l~Gkt~ 83 (206)
T KOG1695|consen 7 TYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG---LAGKTE 83 (206)
T ss_pred EecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---cCCCCH
Confidence 33444667999999999999999999998876323345568999999999999999999999999999998 33 23
Q ss_pred HHHHhhcc------chhHH-HHHhhccCCC---Ch----hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 93 PEFASLGS------KIFPS-FVNFLKSKDP---ND----GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 93 ~~~~~~~~------~~~~~-~~~~~~~~~~---~~----~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+.+.+.. .+... +......... .+ -...+..+.+..+++.|..++++||+||++|.
T Consensus 84 ~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~ 154 (206)
T KOG1695|consen 84 EEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTW 154 (206)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccH
Confidence 34433321 22222 2222221111 11 22335678899999999988888999999983
No 43
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=3.8e-17 Score=98.07 Aligned_cols=64 Identities=23% Similarity=0.476 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeC-CeeeecHHHHHHHHHhhCC
Q 032004 22 FSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 22 ~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~-~~~i~es~~I~~yl~~~~~ 85 (149)
+++++|++|+++|++|+.+.++..+ ..++|++.||.+++|+|+++ |..++||.+|++||++++|
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 4889999999999999999888754 36789999999999999986 8999999999999999875
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.72 E-value=3.6e-17 Score=96.74 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=55.5
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeC-CeeeecHHHHHHHHHh
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEE 82 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~-~~~i~es~~I~~yl~~ 82 (149)
...||+|+|+|++|+++|++|+.+.++.... ...++.+|.+++|+|+++ |..++||.+|++||++
T Consensus 6 ~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 6 YEHCPFCVKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred cCCCcHhHHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 3459999999999999999999998875433 345678999999999975 8999999999999974
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.71 E-value=2.8e-17 Score=97.58 Aligned_cols=64 Identities=25% Similarity=0.447 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl~ 81 (149)
+.||+|+|+|++|+++|++|+.+.++... ..++|.+.||.+++|+|++ +|..++||.+|++||+
T Consensus 7 ~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 7 PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 45999999999999999999999988643 4568999999999999984 7789999999999985
No 46
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.71 E-value=5e-17 Score=96.61 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.||+++|+|++|+++|++|+.+.++... ..++|++.||.|++|+|+++|..|+||.+|++||+
T Consensus 8 ~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 8 SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4889999999999999999999887532 35789999999999999999999999999999984
No 47
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.70 E-value=2e-17 Score=98.11 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
..|++|+++|++|+++|++|+.+.++.... ..+|++.||.+++|+|+++|..++||.+|++||++
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 7 NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 458899999999999999999999886543 24588999999999999999999999999999974
No 48
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.70 E-value=7.4e-17 Score=96.69 Aligned_cols=61 Identities=30% Similarity=0.442 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCCceEEecCCCCC---chhhhhhCCC-CCccEEEeC-CeeeecHHHHHHHHHh
Q 032004 22 FSQRALLTLEEKKVPYKRHLINISDK---PQWFMEISPE-GKVPVVKFD-DKWVADSDVIVRIIEE 82 (149)
Q Consensus 22 ~~~~vr~~L~~~gi~~~~~~v~~~~~---~~~~~~~~p~-~~~P~L~~~-~~~i~es~~I~~yl~~ 82 (149)
++.++|++|+++|++|+.+.+++... .++|++.||. |++|+|+++ |..++||.||++||++
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 59999999999999999999997543 4899999999 999999998 9999999999999975
No 49
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.69 E-value=9.5e-17 Score=96.33 Aligned_cols=63 Identities=24% Similarity=0.457 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeC----CeeeecHHHHHHHHHhhC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~----~~~i~es~~I~~yl~~~~ 84 (149)
||+|+|+|++|.++|++|+.+.++.... ++ .+.+|.+++|+|+++ |.+|+||.+|++||++..
T Consensus 10 ~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 10 CPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 9999999999999999999998875433 23 467999999999865 789999999999999864
No 50
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.69 E-value=9.2e-17 Score=97.63 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCC----chhhhh-h----CCCCCccEEEeCCeeeecHHHHHHHHHhhC
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDK----PQWFME-I----SPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~----~~~~~~-~----~p~~~~P~L~~~~~~i~es~~I~~yl~~~~ 84 (149)
.+..++.|+++|++|+++|++|+.+.+++.++ .+++++ . .|+++||+|+++|..|+||.||++||++++
T Consensus 5 y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 5 YWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred EeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 34457789999999999999999999987652 234442 2 299999999999999999999999999864
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.68 E-value=1.4e-16 Score=94.48 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.|++|+++|++|+++|++|+.+.+++.. ..++|++.||.+++|+|+++|..++||.+|++||+
T Consensus 8 ~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 8 RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4788999999999999999999998743 45789999999999999999999999999999984
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.66 E-value=6.8e-16 Score=91.47 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=59.9
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
++||.... +......||+|+|++++|+++|++|+.+.++.. ..+|.|++|+|+++|..+.||.+|++||++
T Consensus 1 ~~L~~~~~--~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~-------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 1 LELYQWGR--AFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP-------WRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CEEEEeCC--CCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc-------ccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 35666332 344556899999999999999999999988753 278999999999999999999999999987
Q ss_pred h
Q 032004 83 K 83 (149)
Q Consensus 83 ~ 83 (149)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 53
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.65 E-value=3.5e-16 Score=110.93 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=67.6
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCC-CC
Q 032004 13 APDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE-PS 88 (149)
Q Consensus 13 ~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~-~~ 88 (149)
.+...+.|-.++|||++++++||+|+...|++.. ..+||...||.|.||+|++++.+|.++..|++|+++.|-+ ..
T Consensus 28 vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger~ 107 (325)
T KOG4420|consen 28 VLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERV 107 (325)
T ss_pred eeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccccc
Confidence 3344455555999999999999999999998765 5789999999999999999999999999999999998854 44
Q ss_pred CCC
Q 032004 89 LTN 91 (149)
Q Consensus 89 l~~ 91 (149)
|.|
T Consensus 108 l~p 110 (325)
T KOG4420|consen 108 LMP 110 (325)
T ss_pred ccc
Confidence 555
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.64 E-value=9.8e-16 Score=92.47 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhC-----CCCCccEEEeCCeeeecHHHHHHHHHhhCC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-----PEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~P~L~~~~~~i~es~~I~~yl~~~~~ 85 (149)
.++.|+++||+|+++|++|+.+.++.. ++|.+.+ |.|++|+|+++|.+|+||.||++||.++++
T Consensus 9 ~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 9 GRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 367799999999999999999988753 3333333 589999999999999999999999999887
No 55
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.63 E-value=1.6e-15 Score=88.46 Aligned_cols=63 Identities=32% Similarity=0.497 Sum_probs=56.6
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCCCch-hhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQ-WFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.||+|+++|++|+++|++|+.+.++...... ++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 8 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 8 GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4999999999999999999999988665433 48889999999999999999999999999984
No 56
>PLN02907 glutamate-tRNA ligase
Probab=99.61 E-value=5.9e-15 Score=120.01 Aligned_cols=116 Identities=14% Similarity=0.191 Sum_probs=91.8
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRI 79 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~y 79 (149)
|.++||.-.++ | +.++.++|++.|++|+.+. .+|.|++|+|++ +|..|+||.||++|
T Consensus 1 ~~~kLy~~~~S--------~--~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~Y 58 (722)
T PLN02907 1 MEAKLSFPPDS--------P--PLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRY 58 (722)
T ss_pred CeEEEEECCCC--------C--hHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHH
Confidence 67888884433 3 6689999999999999874 268999999985 78999999999999
Q ss_pred HHhhCCCCCCCCc--HHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 80 IEEKYPEPSLTNP--PEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 80 l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
|++.++...|+|. .+++++.+|+..... .. . ...+...++.||++|+.+ +||+|+++|+
T Consensus 59 La~~~p~~~L~p~d~~erAqV~qWL~~~~~-~~----~----~~~l~~~L~~LE~~L~~r--tYLvGd~lTL 119 (722)
T PLN02907 59 IARSASLPGFYGQDAFESSQVDEWLDYAPT-FS----S----GSEFENACEYVDGYLASR--TFLVGYSLTI 119 (722)
T ss_pred HHHhCCCcCCCCCCHHHHHHHHHHHHHHhh-cc----c----HHHHHHHHHHHHHHhccC--CeecCCCCCH
Confidence 9999987778763 477888888764321 11 0 124667899999999876 8999999985
No 57
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.46 E-value=4e-13 Score=79.55 Aligned_cols=61 Identities=26% Similarity=0.419 Sum_probs=50.1
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhh
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~ 83 (149)
...+++|.|++++|++.|++|+.+.+ .. .++ .+|.|+||+|+++|.+|+||.+|+.||.++
T Consensus 14 ~~~~~~~~kv~~~L~elglpye~~~~--~~--~~~--~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLPFNVRCR--AN--AEF--MSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCCcEEEec--CC--ccc--cCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 44577899999999999999998742 11 112 667899999999999999999999999763
No 58
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.40 E-value=4.3e-12 Score=90.58 Aligned_cols=124 Identities=20% Similarity=0.354 Sum_probs=91.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCCCCCcHHH
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEF 95 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~l~~~~~~ 95 (149)
.-+.||||+|+.+.|+..+||||.+.- +....++.|++|.++.+|..+.+|.-|..+|.+.++-+..+++.++
T Consensus 57 ~PnLSPfClKvEt~lR~~~IpYE~~~~-------~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~~e~~ 129 (281)
T KOG4244|consen 57 CPNLSPFCLKVETFLRAYDIPYEIVDC-------SLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLSAEQR 129 (281)
T ss_pred CCCCChHHHHHHHHHHHhCCCceeccc-------cceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCCHHHH
Confidence 345799999999999999999997743 2335778999999999999999999999999999986654666555
Q ss_pred Hhhc----------------------cch-------------hHHHHHhh---------c--cC-C----CChhHHHHHH
Q 032004 96 ASLG----------------------SKI-------------FPSFVNFL---------K--SK-D----PNDGTEQALL 124 (149)
Q Consensus 96 ~~~~----------------------~~~-------------~~~~~~~~---------~--~~-~----~~~~~~~~l~ 124 (149)
++.. .|+ .+.+.+++ + .. . ..++..+.+.
T Consensus 130 a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~ 209 (281)
T KOG4244|consen 130 AQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLH 209 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHH
Confidence 4310 010 00111111 0 00 0 1245777889
Q ss_pred HHHHHHHHHHhhCCCCcccCCCCC
Q 032004 125 EELKALDEHLKTHGGPFIAGEKVN 148 (149)
Q Consensus 125 ~~l~~le~~L~~~~~~yl~G~~~s 148 (149)
+.|..+++.|.++ +||+||++|
T Consensus 210 rDlr~i~~~Lg~K--kflfGdkit 231 (281)
T KOG4244|consen 210 RDLRAISDYLGDK--KFLFGDKIT 231 (281)
T ss_pred HHHHHHHHHhCCC--ccccCCCCC
Confidence 9999999999998 999999987
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.32 E-value=7.9e-12 Score=75.28 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=60.9
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
+.|+||.+.+ ||+|.+++.+|+..|++|+.+.++-.....++...++..++|++..+|..|+++..|.+||
T Consensus 8 ~~V~ly~~~~---------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 8 ESVVVFTKPG---------CPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCEEEEECCC---------CHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3567777544 9999999999999999999988875544456777788899999999999999999999998
Q ss_pred H
Q 032004 81 E 81 (149)
Q Consensus 81 ~ 81 (149)
.
T Consensus 79 ~ 79 (79)
T TIGR02190 79 A 79 (79)
T ss_pred C
Confidence 4
No 60
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.6e-11 Score=81.88 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=55.6
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEE-eCCeeeecHHHHHHHHHhhCCCC
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEP 87 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~-~~~~~i~es~~I~~yl~~~~~~~ 87 (149)
..+||||.|+|+++-.++||++.+...-.+. +--...-...+||+|+ ++|..+.||..|.+|+++..+++
T Consensus 6 YdHCPfcvrarmi~Gl~nipve~~vL~nDDe-~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 6 YDHCPFCVRARMIFGLKNIPVELHVLLNDDE-ETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred eccChHHHHHHHHhhccCCChhhheeccCcc-cChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 4579999999999999999999887654321 1112334457899997 57899999999999999998865
No 61
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.22 E-value=1.1e-10 Score=69.24 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=56.1
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
++||+-. +....-..||+|.|+.++|+.+|++|+.+...- -..+|.|++|+|+++|..+.+|..|++||.+
T Consensus 1 ~~L~~~~--~~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 1 MELHVWG--GDWGLPSVDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CEEEEEC--CCCCCCcCCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 3566532 223344578999999999999999998774321 1256899999999999999999999999986
Q ss_pred h
Q 032004 83 K 83 (149)
Q Consensus 83 ~ 83 (149)
+
T Consensus 72 ~ 72 (73)
T cd03078 72 Q 72 (73)
T ss_pred c
Confidence 4
No 62
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.9e-10 Score=82.71 Aligned_cols=128 Identities=19% Similarity=0.312 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHhcCCC-c---eEEecCCCCC-----ch-----------------hhhhhCCC----CCccEEEeCC-
Q 032004 19 DCPFSQRALLTLEEKKVP-Y---KRHLINISDK-----PQ-----------------WFMEISPE----GKVPVVKFDD- 67 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~-~---~~~~v~~~~~-----~~-----------------~~~~~~p~----~~~P~L~~~~- 67 (149)
.|||++|..+.-+.+|+. . ..+...+.++ ++ -|....|. -+||+|.|..
T Consensus 59 aCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~ 138 (324)
T COG0435 59 ACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVPVLWDKKT 138 (324)
T ss_pred cCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEEEEEecCC
Confidence 399999999999999972 2 2222222211 00 13333443 4799999853
Q ss_pred --eeeecHHHHHHHHHhhCCC-----CCCCCcHHHHh---hccchhHHHHHhhccCCC------ChhHHHHHHHHHHHHH
Q 032004 68 --KWVADSDVIVRIIEEKYPE-----PSLTNPPEFAS---LGSKIFPSFVNFLKSKDP------NDGTEQALLEELKALD 131 (149)
Q Consensus 68 --~~i~es~~I~~yl~~~~~~-----~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~le 131 (149)
.+-.||..|++-+...|++ .+|+|++-+.+ ++.|+++.+.+=++..+- -++.-..+-+.|+.||
T Consensus 139 ~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE 218 (324)
T COG0435 139 QTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLE 218 (324)
T ss_pred CeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHH
Confidence 3558999999999876642 36788775544 566777765543332221 1444556777889999
Q ss_pred HHHhhCCCCcccCCCCC
Q 032004 132 EHLKTHGGPFIAGEKVN 148 (149)
Q Consensus 132 ~~L~~~~~~yl~G~~~s 148 (149)
++|+++ .||+||++|
T Consensus 219 ~~L~~~--ryl~Gd~lT 233 (324)
T COG0435 219 QILSER--RYLTGDQLT 233 (324)
T ss_pred HHhhcC--eeeccccch
Confidence 999998 999999987
No 63
>PRK10638 glutaredoxin 3; Provisional
Probab=99.15 E-value=2e-10 Score=69.71 Aligned_cols=71 Identities=28% Similarity=0.402 Sum_probs=60.3
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
.|++|.+.. ||||.+++.+|+++|++|+.+.++... ..+++.+.++..++|++..+|..|+....+..+-
T Consensus 3 ~v~ly~~~~---------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 3 NVEIYTKAT---------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred cEEEEECCC---------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHH
Confidence 367777544 999999999999999999999987654 4567888999999999999999999998888775
Q ss_pred H
Q 032004 81 E 81 (149)
Q Consensus 81 ~ 81 (149)
.
T Consensus 74 ~ 74 (83)
T PRK10638 74 A 74 (83)
T ss_pred H
Confidence 4
No 64
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.13 E-value=3.1e-10 Score=67.02 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=58.2
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.+++|.+.+ ||+|.+++.+|...|++|+.+.++.......+.......++|.+..+|..++++..|.+||+
T Consensus 2 ~v~lys~~~---------Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPG---------CPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCC---------CHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 356777543 99999999999999999999988754433445556677899999999999999999999974
No 65
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.2e-09 Score=76.73 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHhcCCC----ceEEecCCCC------C-----ch-------------------hhhhhCCC----CCc
Q 032004 19 DCPFSQRALLTLEEKKVP----YKRHLINISD------K-----PQ-------------------WFMEISPE----GKV 60 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~----~~~~~v~~~~------~-----~~-------------------~~~~~~p~----~~~ 60 (149)
.|||++|..+.++.+|++ +..+..-+.. . ++ =|....|. .+|
T Consensus 45 aCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTV 124 (319)
T KOG2903|consen 45 ACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNYTGRFTV 124 (319)
T ss_pred cCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCCCceEEE
Confidence 499999999999999973 3322220000 0 00 02233343 379
Q ss_pred cEEEeCC---eeeecHHHHHHHHHhhCC---------CCCCCCcHHHHhh---ccchhHHHHHhhccC------CCChhH
Q 032004 61 PVVKFDD---KWVADSDVIVRIIEEKYP---------EPSLTNPPEFASL---GSKIFPSFVNFLKSK------DPNDGT 119 (149)
Q Consensus 61 P~L~~~~---~~i~es~~I~~yl~~~~~---------~~~l~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~ 119 (149)
|+|.|-. .+-.||..|++.+...|. .-.|.|+.-++++ .+|+++.+..-++.. +.-+..
T Consensus 125 PVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~ 204 (319)
T KOG2903|consen 125 PVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEE 204 (319)
T ss_pred EEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeeccccccchHHHH
Confidence 9998853 456999999999983332 2357787766665 567887665433221 222455
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccCCCCC
Q 032004 120 EQALLEELKALDEHLKTHGGPFIAGEKVN 148 (149)
Q Consensus 120 ~~~l~~~l~~le~~L~~~~~~yl~G~~~s 148 (149)
-.++-+.|+.+|++|+++.+.|++|+++|
T Consensus 205 V~~lfe~LDr~E~vL~~~~~~f~~G~~LT 233 (319)
T KOG2903|consen 205 VNQLFEALDRCEDVLGKNRKYFLCGDTLT 233 (319)
T ss_pred HHHHHHHHHHHHHHHhcccceEeeccccc
Confidence 56677889999999999855599999987
No 66
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.98 E-value=1.5e-09 Score=65.57 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=48.9
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeee
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~ 71 (149)
|.+++|.+.+ ||+|.+++-+|+++|++|+.+.++-.....+.....+..++|+++.++..+.
T Consensus 1 ~~v~lYt~~~---------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYTRND---------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEeCCC---------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 6788888654 9999999999999999999998875433333344568889999998876553
No 67
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.92 E-value=5.3e-09 Score=61.87 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=55.0
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeeeecHHHHHH
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~ 78 (149)
.++||.+.+ ||+|.+++.+|+..|++|+.+.+.... ..+++.+.++..++|++..+|..|+.-....+
T Consensus 2 ~v~ly~~~~---------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLG---------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCC---------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 356677443 999999999999999999999887543 34578888999999999999999887766543
No 68
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.2e-08 Score=68.64 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCC-CCCCcHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP-SLTNPPEF 95 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~-~l~~~~~~ 95 (149)
++...-|..|...|++.++||..+- ..+.+| .+|.|+||.|-.|...++|-.+|..+...+...- ..++++++
T Consensus 31 l~d~ascLAVqtfLrMcnLPf~v~~----~~Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qk 104 (257)
T KOG3027|consen 31 LPDNASCLAVQTFLRMCNLPFNVRQ----RANAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQK 104 (257)
T ss_pred cccchhHHHHHHHHHHcCCCceeee----cCCccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHH
Confidence 3444559999999999999999874 345666 7899999999999999999999999999876431 23456666
Q ss_pred Hhhcc-------------------------------------chhHHHHHhhcc-------------CCCChhHHHHHHH
Q 032004 96 ASLGS-------------------------------------KIFPSFVNFLKS-------------KDPNDGTEQALLE 125 (149)
Q Consensus 96 ~~~~~-------------------------------------~~~~~~~~~~~~-------------~~~~~~~~~~l~~ 125 (149)
+++.. |-.+.+.++... ....+++.+++.+
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 55321 111122222111 1122677888899
Q ss_pred HHHHHHHHHhhCCCCcccCCCCC
Q 032004 126 ELKALDEHLKTHGGPFIAGEKVN 148 (149)
Q Consensus 126 ~l~~le~~L~~~~~~yl~G~~~s 148 (149)
.++.|+..|+.. +||.|+++|
T Consensus 185 c~~aLsa~L~~q--~yf~g~~P~ 205 (257)
T KOG3027|consen 185 CCRALSAQLGSQ--PYFTGDQPT 205 (257)
T ss_pred HHHHHHHHhcCC--CccCCCCcc
Confidence 999999999976 999999986
No 69
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-08 Score=60.42 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=54.0
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC--Cchhhhhh-CCCCCccEEEeCCeeeecHHHHH
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEI-SPEGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~--~~~~~~~~-~p~~~~P~L~~~~~~i~es~~I~ 77 (149)
|.+++|.|++ ||||.+++-+|..+|++|+.+.++... ...++.+. ++..++|++..+|..++....+.
T Consensus 1 ~~v~iyt~~~---------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~ 71 (80)
T COG0695 1 ANVTIYTKPG---------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLD 71 (80)
T ss_pred CCEEEEECCC---------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHH
Confidence 4577777665 999999999999999999999888766 34455544 48899999999987776544444
Q ss_pred HH
Q 032004 78 RI 79 (149)
Q Consensus 78 ~y 79 (149)
++
T Consensus 72 ~~ 73 (80)
T COG0695 72 AL 73 (80)
T ss_pred HH
Confidence 43
No 70
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.81 E-value=2.3e-08 Score=58.17 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeeeecHHHHHHH
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~y 79 (149)
||+|++++.+|+.++++|+.+.+.... ...++.+.++..++|++..+|..++++..|.+.
T Consensus 10 Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 10 CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 999999999999999999988876544 345677788999999999999999999887654
No 71
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.74 E-value=5.7e-08 Score=57.48 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=54.5
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCC-CccEEEeCCeeeecHHHHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEG-KVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~-~~P~L~~~~~~i~es~~I~~yl 80 (149)
|+||.+.. ||+|.+++-+|+..|++|+.+.++... ..+++.+..+.. ++|++..+|..++....+.++-
T Consensus 2 i~ly~~~~---------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTKPN---------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeCCC---------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 56676433 999999999999999999999887542 223455555555 8999999999999999888774
Q ss_pred H
Q 032004 81 E 81 (149)
Q Consensus 81 ~ 81 (149)
.
T Consensus 73 ~ 73 (75)
T cd03418 73 R 73 (75)
T ss_pred h
Confidence 3
No 72
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.73 E-value=7.9e-08 Score=58.47 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=60.5
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHh-----cCCCceEEecCCCC-CchhhhhhCC--CCCccEEEeCCeeeec
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE-----KKVPYKRHLINISD-KPQWFMEISP--EGKVPVVKFDDKWVAD 72 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~-----~gi~~~~~~v~~~~-~~~~~~~~~p--~~~~P~L~~~~~~i~e 72 (149)
|.|++|.+.+ ||+|.+++-+|+. .|++|+.+.++-.. ..+++.+... ..++|.+..+|..++.
T Consensus 1 m~v~iy~~~~---------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 1 MFVVIFGRPG---------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred CEEEEEeCCC---------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 7888998654 9999999999999 89999988887432 1234444333 3689999999999999
Q ss_pred HHHHHHHHHhhCC
Q 032004 73 SDVIVRIIEEKYP 85 (149)
Q Consensus 73 s~~I~~yl~~~~~ 85 (149)
...|..++...++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T PRK11200 72 CTDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 73
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.67 E-value=1.1e-07 Score=55.57 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeee--ecHHHHHHHH
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRII 80 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i--~es~~I~~yl 80 (149)
||+|++++.+|++.|++|..+.++.... .+++.+.++...+|+++.+|..+ .++..|.+++
T Consensus 10 C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 10 CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 9999999999999999999887764332 34577888999999999888777 6666666654
No 74
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.65 E-value=1.2e-07 Score=56.73 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
.||+|.+++-+|+..|++|+.+.++... ..+++.+..+...+|++..+|..|+....+..+..+
T Consensus 8 ~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 8 YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 3999999999999999999999887543 234566667788999999999999998888776544
No 75
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=7.5e-08 Score=56.75 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCe
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~ 68 (149)
||+|.+++-+|++.|++|+.+.++-.....+..+..+..++|+++.+|.
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 9999999999999999999998875443333344456779999988553
No 76
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.62 E-value=1.2e-07 Score=55.36 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeeeec
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVAD 72 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i~e 72 (149)
.||+|.+++.+|.+++++|+.+.++... ..+++.+.+|.+++|+++++|..+..
T Consensus 9 ~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 9 DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 3999999999999999999988886543 24567888899999999998876644
No 77
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=67.44 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=51.9
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
+-.||||-|||..|...|++|+.++|+.-...+ .+.+...+||+|...|..+.||.+|+.-|.
T Consensus 96 yetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 96 YETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHH
Confidence 447999999999999999999999998654332 444567899999887777999999988774
No 78
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.49 E-value=1.5e-07 Score=53.45 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCC-CchhhhhhCCCCCccEEEeCCeee
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV 70 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~P~L~~~~~~i 70 (149)
||+|.+++-+|+..|++|+.+.++... ..+++.+.....++|.+..+|..|
T Consensus 9 C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 9 CPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred CcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 999999999999999999999988663 345566666788999999888764
No 79
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.49 E-value=8.3e-07 Score=54.16 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHhcC-----CCceEEecCCCC-CchhhhhhCCC--CCccEEEeCCeeeecHHHHHHHHHhhCC
Q 032004 20 CPFSQRALLTLEEKK-----VPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 20 ~~~~~~vr~~L~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~--~~~P~L~~~~~~i~es~~I~~yl~~~~~ 85 (149)
||+|.+++-+|...+ ++|+.+.++... ...++...... .++|++..+|..++.+..|..++.+.++
T Consensus 10 Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 10 CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 999999999999984 567777765322 12344444433 6899999999999999999999888665
No 80
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.44 E-value=2e-06 Score=53.85 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCch----hhhhhCCCCCccEEEeCCeeeecHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~P~L~~~~~~i~es~~I~~y 79 (149)
..||||.+++-+|...|++|+.+.++...... .+.+.+...++|.+..+|..|+....+...
T Consensus 16 ~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 34999999999999999999999988544322 345556778999999999999888877664
No 81
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.40 E-value=2.8e-06 Score=50.94 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCCc----hhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDKP----QWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
||+|.+++-+|...+++|+...++..... ..+.+.+...++|.+..+|..++++..+.++..+
T Consensus 10 Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 10 CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 99999999999999999999988876542 2344566678999999999999999999888654
No 82
>PHA03050 glutaredoxin; Provisional
Probab=98.37 E-value=3.1e-06 Score=53.84 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCCChhHHHHHHHHHhcCC---CceEEecCCCCC----chhhhhhCCCCCccEEEeCCeeeecHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKV---PYKRHLINISDK----PQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~ 78 (149)
...||||.+++-+|...|+ +|+.+.++-... .+++.+.+...+||.+..+|..|+....+..
T Consensus 20 ~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 20 KFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 3449999999999999999 888888874322 3456777778899999999999988877665
No 83
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.28 E-value=4.2e-06 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.375 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhC-CCCCccEEEe-CCeeeecH--HHHHHHH
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS-PEGKVPVVKF-DDKWVADS--DVIVRII 80 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~P~L~~-~~~~i~es--~~I~~yl 80 (149)
||+|++++-.|+..|++|+.+.++-... ...+.+.+ +...+|+++. +|..+.++ ..++.+|
T Consensus 10 C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 10 CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 9999999999999999999877764432 34556666 8899999964 66666554 3444444
No 84
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.25 E-value=6.4e-06 Score=51.38 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=50.2
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
.+.||||.+++-+|..+|++|+.+.+.-... ..++.+.+...++|.+..+|..|+....+....
T Consensus 24 ~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 24 FPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 3569999999999999999999887753221 234555677789999999999998888776654
No 85
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.21 E-value=1.3e-05 Score=48.11 Aligned_cols=64 Identities=17% Similarity=0.378 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHhcCCC--ceEEecCCCCCch----hhhhhCCCCCccEEEeCCeeeecHHHHHHHHHh
Q 032004 19 DCPFSQRALLTLEEKKVP--YKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~ 82 (149)
.||+|.+++-+|...+++ |+...++..+... .+.+.....++|.+..+|..++.+..+.++..+
T Consensus 8 ~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 8 YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 399999999999999999 8888887654332 244556677999999999999999888877654
No 86
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.18 E-value=1e-05 Score=49.77 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=51.3
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
+.||||.+++-+|...|++|+.+.+..... ..++.+.....++|.+..+|..|+....+.....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 459999999999999999999998864322 2345566677899999999999999988877543
No 87
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.17 E-value=1.2e-05 Score=47.32 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHhcCCC---ceEEecCCCCCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHH
Q 032004 19 DCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRII 80 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl 80 (149)
.+|.|.++.++|+..+.+ |+.+..+ .+ ..+|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~---n~----~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN---NP----WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC---CC----CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 589999999999999999 6666432 11 2688999999999 889999999999997
No 88
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00056 Score=50.62 Aligned_cols=75 Identities=24% Similarity=0.242 Sum_probs=54.5
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEe-CCeeeecHHHHHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~-~~~~i~es~~I~~yl~ 81 (149)
++|++ =++....-..|+-|.++.++++.++.+.+.+..+ .+ ...|.|++|+|+. +|..++.-..|..+|.
T Consensus 2 ~~L~~--~~~~~glptid~~sL~~l~y~kl~~~~l~v~~ss----N~---~~s~sg~LP~l~~~ng~~va~~~~iv~~L~ 72 (313)
T KOG3028|consen 2 LELHI--WSGGYGLPTIDPDSLAALIYLKLAGAPLKVVVSS----NP---WRSPSGKLPYLITDNGTKVAGPVKIVQFLK 72 (313)
T ss_pred ceEEE--ecCCCCCCCcChhHHHHHHHHHHhCCCceeEeec----CC---CCCCCCCCCeEEecCCceeccHHHHHHHHH
Confidence 45555 3344455567999999999999999666554322 11 1467899999986 5699999999999999
Q ss_pred hhCCC
Q 032004 82 EKYPE 86 (149)
Q Consensus 82 ~~~~~ 86 (149)
....+
T Consensus 73 k~~~k 77 (313)
T KOG3028|consen 73 KNTKK 77 (313)
T ss_pred Hhccc
Confidence 85433
No 89
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.83 E-value=0.00015 Score=48.63 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=56.3
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCC----CCCccEEEeCCeeeecHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISP----EGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p----~~~~P~L~~~~~~i~es~~I~ 77 (149)
|.||.+.. ......||+|.+++-+|+.++++|+++.+++... .+++.+... ..++|.+..+|..|+....+.
T Consensus 2 VvlYttsl---~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~ 78 (147)
T cd03031 2 VVLYTTSL---RGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78 (147)
T ss_pred EEEEEcCC---cCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHH
Confidence 56776322 1234569999999999999999999998886532 344545433 379999999999999998887
Q ss_pred HHHH
Q 032004 78 RIIE 81 (149)
Q Consensus 78 ~yl~ 81 (149)
+.-+
T Consensus 79 ~L~e 82 (147)
T cd03031 79 RLNE 82 (147)
T ss_pred HHHH
Confidence 7543
No 90
>PRK10824 glutaredoxin-4; Provisional
Probab=97.81 E-value=0.00011 Score=47.14 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
.+.||||.++.-+|...|++|....+.-... ...+.+.+...++|.+-.+|..|+....+....
T Consensus 27 ~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 27 LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 3579999999999999999999887754322 234556677889999999999999998877754
No 91
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.74 E-value=0.00012 Score=57.06 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=50.7
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCCchhhhh---------hCCCCCccEEEeCCeeeec
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFME---------ISPEGKVPVVKFDDKWVAD 72 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~---------~~p~~~~P~L~~~~~~i~e 72 (149)
.|++|.+.+ ||+|.++.-+|...||+|+.+.++-.....++.+ .....+||.+..+|..|+.
T Consensus 3 ~V~vys~~~---------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igG 73 (410)
T PRK12759 3 EVRIYTKTN---------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGG 73 (410)
T ss_pred cEEEEeCCC---------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeC
Confidence 477777554 9999999999999999999998873322223221 2456789999999988877
Q ss_pred HHHHHH
Q 032004 73 SDVIVR 78 (149)
Q Consensus 73 s~~I~~ 78 (149)
-.....
T Consensus 74 f~~l~~ 79 (410)
T PRK12759 74 YDNLMA 79 (410)
T ss_pred chHHHH
Confidence 766655
No 92
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=97.50 E-value=0.00024 Score=46.01 Aligned_cols=57 Identities=74% Similarity=1.162 Sum_probs=44.9
Q ss_pred cHHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 92 PPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+.+.+.+...+...++.+...++..++..+.+.+.|+.||++|++. ++||+||++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~Tl 60 (121)
T cd03201 4 PPEKASVGSKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKEN-GPFINGEKISA 60 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCH
Confidence 3455666777788888888766655677788999999999999862 48999999985
No 93
>PTZ00062 glutaredoxin; Provisional
Probab=97.43 E-value=0.00068 Score=47.91 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
+.||||.++.-+|+..|++|+...+.-... ...+.+.+...++|.+..+|..|+....+.+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 569999999999999999999887764332 234556677789999999999998888777643
No 94
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=97.41 E-value=0.00035 Score=46.13 Aligned_cols=54 Identities=30% Similarity=0.586 Sum_probs=42.1
Q ss_pred HhhccchhHHHHHhhccC--CCChhHHHHHHHHHHHHHHHHhh--------------CCCCcccCCCCCC
Q 032004 96 ASLGSKIFPSFVNFLKSK--DPNDGTEQALLEELKALDEHLKT--------------HGGPFIAGEKVNA 149 (149)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~le~~L~~--------------~~~~yl~G~~~sl 149 (149)
..+-..+++.+..++.+. ...+..++.+.+.|+.||++|++ .+++|++|+++|+
T Consensus 5 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTl 74 (134)
T cd03198 5 NTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTL 74 (134)
T ss_pred hhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCH
Confidence 344556777888888765 34577888999999999999987 2358999999985
No 95
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0027 Score=40.01 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=51.7
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCCchh----hhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQW----FMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~----~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
..||||.+++-+|...++++..++++-.+...+ +.+.....++|.+-.+|..|+....+..+-.
T Consensus 22 s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 22 SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 359999999999999999999999886654332 3445556799999999999999988877743
No 96
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=97.21 E-value=0.00042 Score=39.96 Aligned_cols=31 Identities=29% Similarity=0.570 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++..+.+.+.|+.+|++|+.+ +|++|+++|+
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~--~fl~G~~~s~ 35 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADG--PFLFGDRPSL 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--SBTTBSS--H
T ss_pred HHHHHHHHHHHHHHHHHHhhC--CCCCCCCCCH
Confidence 466788999999999999997 7999999984
No 97
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=97.16 E-value=0.00077 Score=41.81 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=43.0
Q ss_pred HHHHHhhCCCCCCCC--cHHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 77 VRIIEEKYPEPSLTN--PPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 77 ~~yl~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++||++.- ++.| ..+.+++..|+......+.. .....+.+.++.+|++|+++ +|++|+++|+
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~------~~~~~~~~~l~~le~~L~~~--~fl~Gd~~ti 64 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE------GSSKEKAAVLRALNSALGRS--PWLVGSEFTV 64 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCC--CccCCCCCCH
Confidence 37888873 3555 45778888887743322221 23355567888999999876 9999999985
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=96.95 E-value=0.0011 Score=41.11 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 116 ~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+...+.+.+.+..+|++|++++++||+|+++|+
T Consensus 33 ~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~ 66 (99)
T PF14497_consen 33 GDFSREELPKALKILEKHLAERGGDFLVGDKPTL 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--H
T ss_pred HHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCH
Confidence 3567788999999999999999666999999984
No 99
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=96.91 E-value=0.0027 Score=41.01 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=30.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 113 KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 113 ~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++..++..+.+.+.++.+|++|++.+++|++|+++|+
T Consensus 27 ~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~ 63 (124)
T cd03184 27 PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGM 63 (124)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccH
Confidence 3444677788999999999999874569999999985
No 100
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=96.85 E-value=0.0019 Score=42.88 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+.....+.+.|+.||++|+++ +|++|+++|+
T Consensus 36 ~~~~~~l~~~l~~LE~~L~~~--~yl~Gd~~Tl 66 (142)
T cd03190 36 DEAVDELFEALDRLEELLSDR--RYLLGDRLTE 66 (142)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CeeeCCCccH
Confidence 345567888999999999876 9999999985
No 101
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.84 E-value=0.0018 Score=42.53 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=28.8
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCC
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
|++|.+++ |++|++++-+|...|++|+.+.+.-
T Consensus 2 i~iY~~~~---------C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPS---------CTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCC---------ChHHHHHHHHHHHcCCCcEEeeccC
Confidence 67888554 9999999999999999999998753
No 102
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.79 E-value=0.0071 Score=37.27 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=51.3
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCC----CCCccEEEeCCeeeecHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISP----EGKVPVVKFDDKWVADSDVIV 77 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p----~~~~P~L~~~~~~i~es~~I~ 77 (149)
|.+|+ +|..+ ....--.|++++.+|..+||+|+.+.++..+. ..++.+..+ ..++|.+-.++..|+....+.
T Consensus 2 i~vY~--ts~~g-~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYI--ASSSG-STEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEE--ecccc-cHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 56676 44422 11112238999999999999999999987653 344555543 378999988999998887665
Q ss_pred HH
Q 032004 78 RI 79 (149)
Q Consensus 78 ~y 79 (149)
..
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 53
No 103
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.77 E-value=0.0015 Score=41.72 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINIS 45 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~ 45 (149)
||+|.+++-.|+.+|++|+.+.+.-.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCC
Confidence 99999999999999999999987643
No 104
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=96.71 E-value=0.0017 Score=40.63 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.|+.+|++|+++ +|++|+++|+
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ 64 (107)
T cd03186 34 EKARKELRESLLALAPVFAHK--PYFMSEEFSL 64 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CcccCCCCcH
Confidence 445667888999999999875 9999999985
No 105
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.69 E-value=0.0038 Score=39.90 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.+|++|+++ +|++|+++|+
T Consensus 40 ~~~~~~i~~~l~~le~~L~~~--~yl~Gd~~tl 70 (115)
T cd03196 40 EEYRQQAEAFLKDLEARLQQH--SYLLGDKPSL 70 (115)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccCCCCccH
Confidence 456678899999999999876 8999999985
No 106
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=96.63 E-value=0.003 Score=40.92 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhhC-CCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTH-GGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~-~~~yl~G~~~sl 149 (149)
...+.+.+.|..||++|+++ +++||+|+++|+
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ 67 (126)
T cd03210 35 DYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISF 67 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccH
Confidence 44556788999999999875 568999999985
No 107
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=96.61 E-value=0.011 Score=36.99 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=45.7
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhC---------CCCCccEEEeCCeee
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS---------PEGKVPVVKFDDKWV 70 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~---------p~~~~P~L~~~~~~i 70 (149)
|++.+|+ ++..+ ....-...+++..+|+.++|+|+.+.+...+. ..++++.. +..-.|-+..++..+
T Consensus 1 m~I~vy~--ss~sg-~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYI--SSISG-SREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp -SEEEEE---SS-S-SHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred CEEEEEE--ecccC-CHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 8899999 55533 22223348899999999999999998887543 33444444 223456777788888
Q ss_pred ecHHHHHHH
Q 032004 71 ADSDVIVRI 79 (149)
Q Consensus 71 ~es~~I~~y 79 (149)
++-..+-+.
T Consensus 78 Gdye~f~ea 86 (99)
T PF04908_consen 78 GDYEDFEEA 86 (99)
T ss_dssp EEHHHHHHH
T ss_pred eeHHHHHHH
Confidence 877665443
No 108
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.59 E-value=0.0026 Score=40.04 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
||+|++++-+|+.+|++|+.+.+.-
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 9 CSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CHHHHHHHHHHHHcCCCcEEEeecc
Confidence 9999999999999999999998853
No 109
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.56 E-value=0.0042 Score=39.80 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=28.2
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCC
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
+++|..+. |++|.+++-.|+..|++|+.+.+.-
T Consensus 2 i~iY~~~~---------C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPS---------CSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCC---------CHHHHHHHHHHHHCCCceEEEecCC
Confidence 67777444 9999999999999999999998753
No 110
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.019 Score=35.69 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=54.5
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcC-CCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHH
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKK-VPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~g-i~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
|-||.|-+ + ..+.|-||.++--+|...| ++|..+.|-.... ....++.+-+.+.|-|-.+|..++.+..|.+..
T Consensus 17 VvLFMKGt-p---~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 17 VVLFMKGT-P---EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred eEEEecCC-C---CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 44565532 2 3577999999999999999 5666555533221 334556677899999999999999998777765
Q ss_pred Hh
Q 032004 81 EE 82 (149)
Q Consensus 81 ~~ 82 (149)
.+
T Consensus 93 q~ 94 (105)
T COG0278 93 QS 94 (105)
T ss_pred Hc
Confidence 43
No 111
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=96.45 E-value=0.0038 Score=38.01 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+.....+.+.|+.+|+.|+++ +|++||++|+
T Consensus 27 ~~~~~~~~~~l~~le~~l~~~--~~l~G~~~t~ 57 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLKGG--PYLVGDKLTI 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SSSSBSS-CH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CeeeccCCch
Confidence 345667888899999999955 9999999984
No 112
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=96.39 E-value=0.0044 Score=37.41 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.+|+.|+++ +|++|+++|+
T Consensus 19 ~~~~~~~~~l~~le~~L~~~--~yl~Gd~~t~ 48 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK--KFFFGDKPTS 48 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CccCCCCCCH
Confidence 55678889999999999987 8999999984
No 113
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.36 E-value=0.0074 Score=39.72 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=28.9
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCC
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~ 45 (149)
+++|..++ |+.|++++-.|...|++|+.+.+.-.
T Consensus 2 i~iY~~~~---------C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISS---------CTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCC---------CHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 67777544 99999999999999999999988643
No 114
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.28 E-value=0.005 Score=38.42 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.|+.+|++|+++ +|++|+++|+
T Consensus 43 ~~~~~~~~~l~~lE~~L~~~--~~l~g~~~t~ 72 (110)
T cd03180 43 ASLAAWAKLMAILDAQLAGR--PYLAGDRFTL 72 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CcccCCCCCH
Confidence 35667899999999999875 8999999985
No 115
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=96.28 E-value=0.008 Score=38.59 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.||++|+++ +||+|+++|+
T Consensus 35 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~T~ 64 (121)
T cd03209 35 DYLAKLPDKLKLFSDFLGDR--PWFAGDKITY 64 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCcCCCCccH
Confidence 34566788899999999775 8999999985
No 116
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=96.28 E-value=0.0055 Score=38.50 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.+|++|+.+ +||+|+++|+
T Consensus 43 ~~~~~~~~~l~~le~~l~~~--~~l~G~~~t~ 72 (114)
T cd03188 43 AARERLAARLAYLDAQLAGG--PYLLGDRFSV 72 (114)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CeeeCCCcch
Confidence 44567889999999999865 8999999985
No 117
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.28 E-value=0.014 Score=33.21 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHhc-----CCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeee
Q 032004 20 CPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (149)
Q Consensus 20 ~~~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~ 71 (149)
||+|.+++-+|++. +++|....++ +. ++..+......+|++..+|..++
T Consensus 11 C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~-~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 11 CPYCPDAVQAANRIAALNPNISAEMIDAA--EF-PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred CCCcHHHHHHHHHHHHhCCceEEEEEEcc--cC-HhHHHHcCCcccCEEEECCEEEE
Confidence 99999999988865 4555544432 22 34455555678999988886554
No 118
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=96.25 E-value=0.005 Score=39.16 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 119 TEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 119 ~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
....+.+.++.+|++|+++ +|++|+++|+
T Consensus 55 ~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~ 83 (119)
T cd03189 55 INPELKKHLDFLEDRLAKK--GYFVGDKLTA 83 (119)
T ss_pred HhHHHHHHHHHHHHHHccC--CCCCCCCCCH
Confidence 3456888999999999876 8999999985
No 119
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.24 E-value=0.0083 Score=39.44 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=28.6
Q ss_pred eeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCC
Q 032004 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (149)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~ 45 (149)
|++|..++ |+.|++++-.|+.+|++|+.+.+.-.
T Consensus 2 i~iY~~~~---------C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTAS---------CASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCC---------ChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 56777544 99999999999999999999987643
No 120
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=96.21 E-value=0.0065 Score=38.82 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 120 EQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 120 ~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+.+.+.|+.+|++|++++++||+|+++|+
T Consensus 46 ~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 75 (121)
T cd03191 46 RHWIARGFAALEKLLAQTAGKFCFGDEPTL 75 (121)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeecCCcCCH
Confidence 355788899999999864357999999985
No 121
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.16 E-value=0.0068 Score=37.48 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++....+.+.++.+|++|+++ +|++|+++|+
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ 62 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGR--DWLAGDRPTI 62 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccCCCCCCH
Confidence 456778999999999999876 8999999985
No 122
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=96.09 E-value=0.007 Score=38.57 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 115 PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 115 ~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
..+...+.+.+.|+.||++|+++ +|++||++|+
T Consensus 35 ~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~ 67 (118)
T cd03177 35 PPEEKLDKLEEALDFLETFLEGS--DYVAGDQLTI 67 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHccC--CeeCCCCcCH
Confidence 34567778999999999999875 8999999985
No 123
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=96.07 E-value=0.0063 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.||++|+.+ +|++||++|+
T Consensus 45 ~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ 74 (118)
T cd03187 45 ENEEKLKKVLDVYEARLSKS--KYLAGDSFTL 74 (118)
T ss_pred HHHHHHHHHHHHHHHHcccC--cccCCCCccH
Confidence 34567888999999999875 9999999985
No 124
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=96.06 E-value=0.0071 Score=39.93 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 122 ALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 122 ~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+.+.|+.||++|+.++++|++|+++|+
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ 70 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSR 70 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCH
Confidence 4578899999999855568999999985
No 125
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=96.02 E-value=0.008 Score=38.05 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++....+.+.|+.||+.|+++ +|++||++|+
T Consensus 48 ~~~~~~l~~~l~~le~~L~~~--~~l~gd~~t~ 78 (117)
T cd03182 48 ERSKARAADFLAYLDTRLAGS--PYVAGDRFTI 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CcccCCCCCH
Confidence 345567889999999999876 8999999985
No 126
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=95.98 E-value=0.0097 Score=36.80 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.||+.|+++ +|++|+++|+
T Consensus 42 ~~~~~~~~~~l~~le~~L~~~--~~l~g~~~sl 72 (105)
T cd03179 42 AFLRERGHAALAVLEAHLAGR--DFLVGDALTI 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHccC--ccccCCCCCH
Confidence 345677888999999999765 8999999985
No 127
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.94 E-value=0.0093 Score=38.31 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
||+|++++-+|+..|++|+.+.+.-
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 9 CTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CHHHHHHHHHHHHcCCceEEEecCC
Confidence 9999999999999999999888753
No 128
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=95.91 E-value=0.011 Score=37.87 Aligned_cols=31 Identities=32% Similarity=0.632 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+.....+.+.++.+|+.|+++ +|++|+++|+
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ 64 (126)
T cd03185 34 EKAKEEALEALKVLEEELGGK--PFFGGDTIGY 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCCCcch
Confidence 445667889999999999875 9999999985
No 129
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.89 E-value=0.032 Score=33.32 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=39.1
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcC--CCceEEecCCCCCchhhhhhCCCCCccEEEeCC
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKK--VPYKRHLINISDKPQWFMEISPEGKVPVVKFDD 67 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~ 67 (149)
++.||.|++ |+-|..+.-+|+... .+++...++..+.+.++.+.. -.+|+|..+|
T Consensus 1 ~l~l~~k~~---------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPG---------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SS---------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCC---------CChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc--CCCCEEEEcC
Confidence 467888776 999999999999644 566777777775555343333 4899998766
No 130
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=95.88 E-value=0.0086 Score=37.11 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.+|++|+.+ +|++|+++|+
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~--~~l~g~~~t~ 59 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKG--PYLLGERFTA 59 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccC--CcccCCccCH
Confidence 445577899999999999876 8999999985
No 131
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=95.83 E-value=0.014 Score=36.71 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.+|+.|+.+ +|++|+++|+
T Consensus 39 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ 69 (113)
T cd03178 39 ERYTNEAKRLYGVLDKRLAGR--DYLAGDEYSI 69 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CcccCCCCCe
Confidence 345677888999999999865 8999999985
No 132
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=95.82 E-value=0.012 Score=35.67 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.||+.|+++ +|++|+++|+
T Consensus 35 ~~~~~~~~~~~~~l~~~L~~~--~~~~g~~~t~ 65 (100)
T cd00299 35 EEAREELAAALAALEKLLAGR--PYLAGDRFSL 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CCCCCCCcCH
Confidence 455677899999999999876 8999999985
No 133
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.79 E-value=0.018 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 115 PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 115 ~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
..++..+...+.|+.|++.|+++ +||+||++|.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~--~~l~Gd~pT~ 86 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQ--PYFFGDQPTE 86 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCcH
Confidence 34677788889999999999997 9999999983
No 134
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.67 E-value=0.017 Score=37.44 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 116 ~~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
.+...+.+.+.|+.+|++|++. +|++|+++|+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~--~fl~Gd~~t~ 87 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQ--PFLGGAAPNY 87 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCC--CccCCCCCch
Confidence 3566778999999999999875 8999999985
No 135
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=95.60 E-value=0.017 Score=36.87 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCC--------CCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHG--------GPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~--------~~yl~G~~~sl 149 (149)
++....+.+.|+.||++|+++. ++||+|+++|+
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~Tl 68 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTL 68 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCH
Confidence 4556778899999999998641 25999999985
No 136
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=95.46 E-value=0.028 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHHHHHHHhhC-CCCcccCCCCCC
Q 032004 116 NDGTEQALLEELKALDEHLKTH-GGPFIAGEKVNA 149 (149)
Q Consensus 116 ~~~~~~~l~~~l~~le~~L~~~-~~~yl~G~~~sl 149 (149)
.+...+.+.+.++.+|..|++. +++||+|| +|+
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ 72 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSI 72 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcH
Confidence 3566778889999999998754 56899999 985
No 137
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=95.45 E-value=0.017 Score=36.86 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.+|+.|+.+ +|++|+++|+
T Consensus 39 ~~~~~~~~~~l~~le~~l~~~--~~l~G~~~si 69 (123)
T cd03181 39 EAALEELDRVLGVLEERLLKR--TYLVGERLTL 69 (123)
T ss_pred HHHHHHHHHHHHHHHHHHccC--ceeccCCccH
Confidence 345667888999999999876 8999999985
No 138
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.40 E-value=0.099 Score=30.75 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=38.5
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHH----HHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeee
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRA----LLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWV 70 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~v----r~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i 70 (149)
|.+++|. + .||.|..+ .-++++.|.+++...++ ..++ ........+|++..+|..+
T Consensus 1 m~i~~~a---~-------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~-a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 1 MKIQIYG---T-------GCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNE-ILEAGVTATPGVAVDGELV 60 (76)
T ss_pred CEEEEEC---C-------CCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHH-HHHcCCCcCCEEEECCEEE
Confidence 5667765 2 29999998 55777888888887776 1222 2334567899998877544
No 139
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.32 E-value=0.066 Score=31.51 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=32.0
Q ss_pred ChhHHHHHHH----HHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeec
Q 032004 20 CPFSQRALLT----LEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD 72 (149)
Q Consensus 20 ~~~~~~vr~~----L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~e 72 (149)
||+|.++.-+ +...|+.++...+ ...++. .......+|+++.||...+.
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 9999977764 4456666655553 334444 56667899999988865433
No 140
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=95.22 E-value=0.023 Score=35.20 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.||+.|++.+++|++|+++|+
T Consensus 39 ~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~ 70 (104)
T cd03192 39 FLKEAIPKYLKKLEKILKENGGGYLVGDKLTW 70 (104)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCeeeCCCccH
Confidence 44566888999999999873348999999985
No 141
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.20 E-value=0.036 Score=34.94 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCC
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
+.|+.|++++-.|++.|++|+.+.+.-
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 349999999999999999999998754
No 142
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.19 E-value=0.025 Score=36.18 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
.|+.|++++-+|++.|++|+++.+.-
T Consensus 9 ~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 9 GCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 49999999999999999999988753
No 143
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.01 E-value=0.15 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHhcC---CCceEEecCCCCCchhhhhhCC--CCCccEEEeC-C-------------eeeecHHHHH
Q 032004 17 LGDCPFSQRALLTLEEKK---VPYKRHLINISDKPQWFMEISP--EGKVPVVKFD-D-------------KWVADSDVIV 77 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~g---i~~~~~~v~~~~~~~~~~~~~p--~~~~P~L~~~-~-------------~~i~es~~I~ 77 (149)
..+||.|..+.=+|...- -..+.+.|+.........+.-. +-.+|+|+.+ | ..|.++..|+
T Consensus 21 ~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~ 100 (112)
T PF11287_consen 21 RFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRIL 100 (112)
T ss_pred eEECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHH
Confidence 357999999998887532 3555667776655555544322 3579999743 2 3799999999
Q ss_pred HHHHhhCCC
Q 032004 78 RIIEEKYPE 86 (149)
Q Consensus 78 ~yl~~~~~~ 86 (149)
+||.++|+-
T Consensus 101 ~~La~r~g~ 109 (112)
T PF11287_consen 101 RYLAERHGF 109 (112)
T ss_pred HHHHHHcCC
Confidence 999999983
No 144
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=94.84 E-value=0.038 Score=36.56 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
++..+...+.++.||+.|+++ +||+||++|+
T Consensus 63 ~~~~~~a~~~l~~l~~~L~~~--~~~~Gd~~t~ 93 (137)
T cd03212 63 AEIYRDAKECLNLLSQRLGES--QFFFGDTPTS 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CcCCCCCCcH
Confidence 456667788999999999987 9999999984
No 145
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=94.78 E-value=0.034 Score=35.71 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHhhccchhH--HHHHhhccCCCChhHHHHHHHHHHHHHHHHhh-CCCCcccCCCCCC
Q 032004 93 PEFASLGSKIFP--SFVNFLKSKDPNDGTEQALLEELKALDEHLKT-HGGPFIAGEKVNA 149 (149)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~-~~~~yl~G~~~sl 149 (149)
..|+.+.++++. .+......+--.....+.+.+.++.||+.|++ .+++|++| ++|+
T Consensus 3 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tl 61 (120)
T cd03203 3 AKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLG-QFSL 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCC-CccH
Confidence 356666666443 33322222110111134567888999999975 13589999 9985
No 146
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.1 Score=33.66 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.7
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCC
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
|.+++|.-++ |.-|++++-.|+..|++|+++.+.-
T Consensus 1 ~~itiy~~p~---------C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 1 MMITIYGNPN---------CSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred CeEEEEeCCC---------ChHHHHHHHHHHHcCCCcEEEEeec
Confidence 4577777333 9999999999999999999887753
No 147
>PRK10853 putative reductase; Provisional
Probab=94.29 E-value=0.067 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHhcCCCceEEecC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLIN 43 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~ 43 (149)
|.-|++++-.|++.|++|+++.+.
T Consensus 10 C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 10 CDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CHHHHHHHHHHHHcCCCcEEeehc
Confidence 999999999999999999988775
No 148
>PRK10026 arsenate reductase; Provisional
Probab=94.27 E-value=0.061 Score=35.82 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=28.6
Q ss_pred ceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCC
Q 032004 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
.|++|+.++ |.-|++++-.|+++|++|+++.+--
T Consensus 3 ~i~iY~~p~---------Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 3 NITIYHNPA---------CGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred EEEEEeCCC---------CHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 477777554 9999999999999999999988743
No 149
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=93.89 E-value=0.076 Score=34.06 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 118 ~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
...+.+.+.++.+|++|.+ +++|++|+++|+
T Consensus 45 ~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ 75 (126)
T cd03183 45 KAEENLEESLDLLENYFLK-DKPFLAGDEISI 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCcccCCCCCH
Confidence 3456688889999998543 248999999985
No 150
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.86 E-value=0.14 Score=27.34 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHH-----hcCCCceEEecCCCCCchhhhhhCCCCCccEEEe
Q 032004 19 DCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (149)
Q Consensus 19 ~~~~~~~vr~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~ 65 (149)
.|++|.+.+..+. ..++.+..+.++...........++...+|+++.
T Consensus 8 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 8 WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 4999999999999 4555665555544333333335677889999975
No 151
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=93.79 E-value=0.11 Score=33.04 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.++.+|..|+. +++||+| ++|+
T Consensus 41 ~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSi 71 (114)
T cd03195 41 EAAQAAAEKLIAVAEALLPP-GAANLFG-EWCI 71 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcccC-CccH
Confidence 56677788999999999973 4589999 5985
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=93.64 E-value=0.095 Score=34.22 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHhcCCCceEEecC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLIN 43 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~ 43 (149)
-|.-|+|++-.|++.|++|+++.+.
T Consensus 10 ~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 10 GCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEecc
Confidence 3999999999999999999999875
No 153
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.78 E-value=0.14 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCC
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINI 44 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~ 44 (149)
|+-|+|++-.|+..|++|+.+.+.-
T Consensus 9 C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 9 CSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeccC
Confidence 9999999999999999999887653
No 154
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.54 Score=33.62 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCCccEEEeCCeeeecHHHHHHHHH
Q 032004 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 16 ~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
..+-|-|++++.-+|...|++|+...|-..+. ....++.+-+.+.|-|-.+|..++....|..-+.
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhh
Confidence 35679999999999999999999887765433 2335566778999999989988887776655544
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=92.02 E-value=0.2 Score=31.87 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHhcCCCceEEecC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLIN 43 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~ 43 (149)
.|+-|++++-.|++.|++|+.+.+.
T Consensus 8 ~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 8 RCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEecc
Confidence 3999999999999999999988764
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=91.10 E-value=0.82 Score=27.78 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHhc-----CCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeee
Q 032004 20 CPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (149)
Q Consensus 20 ~~~~~~vr~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~ 71 (149)
|++|..+.-+++.. ++.++.+.++ .. ++......-..+|.++.+|..+.
T Consensus 24 C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 24 CHNCPDVVQALNLMAVLNPNIEHEMIDGA--LF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCCcHHHHHHHHHHHHHCCCceEEEEEhH--hC-HHHHHHcCCccCCEEEECCEEEE
Confidence 99998888876653 3455544433 22 33445555668999987775543
No 157
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=1.1 Score=26.46 Aligned_cols=53 Identities=28% Similarity=0.199 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCC-----------Cchhhhhh--CCCCCccEEE-eCCeee
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISD-----------KPQWFMEI--SPEGKVPVVK-FDDKWV 70 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~-----------~~~~~~~~--~p~~~~P~L~-~~~~~i 70 (149)
..||-|..+.-.|+..+++|+.+++...- ..++|-.. +..-.+|+|. ++|.++
T Consensus 10 n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vV 76 (85)
T COG4545 10 NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVV 76 (85)
T ss_pred ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEE
Confidence 45999999999999999999999886431 12334332 3334689985 455444
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=89.34 E-value=1.9 Score=24.99 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHh----cCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCe
Q 032004 20 CPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (149)
Q Consensus 20 ~~~~~~vr~~L~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~ 68 (149)
|++|.++.-.|+. .+..+....++..... +..+......+|+++.+|.
T Consensus 11 C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 11 CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred CcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEECCE
Confidence 9999998888764 3444565666654433 3444555678999987764
No 159
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=86.55 E-value=0.87 Score=29.20 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=31.3
Q ss_pred hhccchhHHHHHhhcc------------CCCChhHHHHHHHHHHHHHHHHhhCCCCcccCC
Q 032004 97 SLGSKIFPSFVNFLKS------------KDPNDGTEQALLEELKALDEHLKTHGGPFIAGE 145 (149)
Q Consensus 97 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~ 145 (149)
++..|+++.|..+... ....++......+.+...++.|.. |++||+|+
T Consensus 10 ~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe 69 (117)
T PF14834_consen 10 QVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE 69 (117)
T ss_dssp HHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS
T ss_pred HHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc
Confidence 4677888877664321 112366677788889999988876 78999997
No 160
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=82.92 E-value=2.9 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=13.9
Q ss_pred CccEEEe--CCeeeecHHHHHHHHHhhCCC
Q 032004 59 KVPVVKF--DDKWVADSDVIVRIIEEKYPE 86 (149)
Q Consensus 59 ~~P~L~~--~~~~i~es~~I~~yl~~~~~~ 86 (149)
.-|.|.+ +|..+.|+.||.+|+.+-|.+
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 4478854 578999999999999987653
No 161
>PHA02125 thioredoxin-like protein
Probab=82.75 E-value=5.2 Score=23.13 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeC
Q 032004 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD 66 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~ 66 (149)
.|+.|.++.-.|+. +.+....++... ..+..+.+....+|+++++
T Consensus 9 wC~~Ck~~~~~l~~--~~~~~~~vd~~~-~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 9 WCANCKMVKPMLAN--VEYTYVDVDTDE-GVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred CCHhHHHHHHHHHH--HhheEEeeeCCC-CHHHHHHcCCceeCeEECC
Confidence 49999999888864 456655555433 3456666667889999843
No 162
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=81.86 E-value=2.1 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+...+.+.+.|+.+|++|+++ +| +++|+
T Consensus 36 ~~~~~~~~~~l~~le~~L~~~--~~---d~~Tl 63 (98)
T cd03205 36 ERQRGKIERALDALEAELAKL--PL---DPLDL 63 (98)
T ss_pred HHHHHHHHHHHHHHHHhhhhC--CC---CCCCH
Confidence 455677889999999999875 77 77874
No 163
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=81.10 E-value=2.2 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecC
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLIN 43 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~ 43 (149)
+.|.-|++++-.|++.|++|+.+.+.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 45999999999999999999988774
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.29 E-value=2.1 Score=34.59 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHhcCC---CceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeec----HHHHHHHHHhh
Q 032004 20 CPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD----SDVIVRIIEEK 83 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~e----s~~I~~yl~~~ 83 (149)
||||-.+.-+++...+ .++...++-. ..+++........||.+..++..+.+ -..+++.+.+.
T Consensus 128 Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 128 CHNCPDVVQALNLMAVLNPNITHTMIDGA-LFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEch-hCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 8888877766554332 3333333322 23455555666799999887755443 23455555543
No 165
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.40 E-value=2.1 Score=34.58 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHhcCC---CceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecH----HHHHHHHHhh
Q 032004 20 CPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS----DVIVRIIEEK 83 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es----~~I~~yl~~~ 83 (149)
||||-.+.-+++...+ .++...++-. ..+++........||.+..++..+.+. ..+++.+.+.
T Consensus 129 Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~-~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 129 CQNCPDVVQALNQMALLNPNISHTMIDGA-LFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred CCCCHHHHHHHHHHHHhCCCceEEEEEch-hCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 8888887776654433 2333333322 234455555667999998777554432 3344555443
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=74.07 E-value=8.3 Score=31.52 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=31.2
Q ss_pred ChhHHHHHHHH----Hhc-CCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeee
Q 032004 20 CPFSQRALLTL----EEK-KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWV 70 (149)
Q Consensus 20 ~~~~~~vr~~L----~~~-gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i 70 (149)
||+|-++.-++ .+. ++..+.+.+... ++..+...-..+|.++.||..+
T Consensus 488 C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~---~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 488 CTLCPDVVLAAQRIASLNPNVEAEMIDVSHF---PDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEECccc---HHHHHhCCceecCEEEECCEEE
Confidence 88887766543 333 567666655432 4555556677899998877543
No 167
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=73.94 E-value=10 Score=25.58 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcccCCCCCC
Q 032004 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVNA 149 (149)
Q Consensus 117 ~~~~~~l~~~l~~le~~L~~~~~~yl~G~~~sl 149 (149)
+..++.+-..++.+-+.+.. +++|+.|+++||
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~-~~~FlaGd~ptI 109 (149)
T cd03197 78 DDVREWLYDALNTWVAALGK-DRQFHGGSKPNL 109 (149)
T ss_pred chHHHHHHHHHHHHHHHhcC-CCCccCCCCCCH
Confidence 44456666666655555544 258999999986
No 168
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=8.3 Score=28.61 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCC-chhhhhhC----CCCCccEEEeCCeeeecHHHHHHHH
Q 032004 23 SQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS----PEGKVPVVKFDDKWVADSDVIVRII 80 (149)
Q Consensus 23 ~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~----p~~~~P~L~~~~~~i~es~~I~~yl 80 (149)
|..||.+|+-.++.|+++.|++... ..|+.... -...+|.+-.+|.-|+....|.+.-
T Consensus 150 C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~Ln 212 (281)
T KOG2824|consen 150 CNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLN 212 (281)
T ss_pred HHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhh
Confidence 8999999999999999999998763 33333322 2457997777899998888877653
No 169
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=55.84 E-value=14 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=21.4
Q ss_pred ccEEE-eCCeeeecHHHHHHHHHhhCC
Q 032004 60 VPVVK-FDDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 60 ~P~L~-~~~~~i~es~~I~~yl~~~~~ 85 (149)
.|.+. .+|.+++.|..|++++.++|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45554 588999999999999998776
No 170
>PHA03158 hypothetical protein; Provisional
Probab=54.44 E-value=75 Score=22.49 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=45.1
Q ss_pred eeeecHHHHHHHHHhhCCCCCCCCcHHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhh
Q 032004 68 KWVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKT 136 (149)
Q Consensus 68 ~~i~es~~I~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~ 136 (149)
.+..+|..-.+-|.+.-+...+..+.+++.+...+......... ..+.+..+++.++.||+-++.
T Consensus 208 ~V~y~sLpf~ERl~Rs~pPWCv~t~~EK~~~~kQllka~kkc~~----~s~~~~~leeei~eleks~a~ 272 (273)
T PHA03158 208 HVRFDDLPFMERIKRSGPPWCIKTAKEKAAILKQLLKAAKKCCK----NSEHEKELEEEIEELEKSLAK 272 (273)
T ss_pred EEEeccCcHHHHHhccCCCcEeecHHHhHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHhhcC
Confidence 68899999999888877766677788887776655555444332 234456677777788877653
No 171
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=52.34 E-value=11 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=18.7
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHh
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE 32 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~ 32 (149)
|.|+||-.. +.-..++||+||..+|+.
T Consensus 1 ~~mKLYRfi-----TGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFI-----TGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEee-----cCCchHHHHHHHHHHHhC
Confidence 566776532 122458999999999986
No 172
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=50.44 E-value=15 Score=23.70 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=31.7
Q ss_pred cCCCCCCCCCChhHHHHHHHHH----hcCCCceEEecCCCCCc------hhhhh--hCCCCCccEEEe--CCeeeecHH
Q 032004 10 AVGAPDILGDCPFSQRALLTLE----EKKVPYKRHLINISDKP------QWFME--ISPEGKVPVVKF--DDKWVADSD 74 (149)
Q Consensus 10 ~~~~~~~~~~~~~~~~vr~~L~----~~gi~~~~~~v~~~~~~------~~~~~--~~p~~~~P~L~~--~~~~i~es~ 74 (149)
|+.+.+....||.|.++.-+++ .+.-....+.+..++.+ -.|+. ......+|+|+- ++..+.|..
T Consensus 28 gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 28 GSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp --B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 4544566779999999886544 43334555544444321 23544 222467999973 445666554
No 173
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=47.17 E-value=74 Score=20.30 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=28.0
Q ss_pred CCChhHHHHHHHHHh----cCCCceEEecCCCC----C----chhhhhhCC----CCCccEEEe--CC
Q 032004 18 GDCPFSQRALLTLEE----KKVPYKRHLINISD----K----PQWFMEISP----EGKVPVVKF--DD 67 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~----~gi~~~~~~v~~~~----~----~~~~~~~~p----~~~~P~L~~--~~ 67 (149)
..||+|+++.=.|+. .++++-.+.++... . -.+|.+... ...+|+++. +|
T Consensus 33 ~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 33 KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 359999997666543 34555555555321 0 123444433 345999963 55
No 174
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=44.53 E-value=46 Score=20.81 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHHhcCCC---ceEEecCCCCCchhhhhhCCCCCccEEEe
Q 032004 19 DCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF 65 (149)
Q Consensus 19 ~~~~~~~vr~~L~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~P~L~~ 65 (149)
.|++|+.++-+|++..-. ++...++.. ..++.........+|++..
T Consensus 33 wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 33 GCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred CCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCCCcCCEEEE
Confidence 599999888877654322 233444433 3355666667788999963
No 175
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.42 E-value=38 Score=21.23 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=28.7
Q ss_pred CceeehhhhcCCCCCCCCCChhHHHHHHHHHhcCCCceEEecCCCC
Q 032004 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (149)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~vr~~L~~~gi~~~~~~v~~~~ 46 (149)
|.+..|++-|++.. ..---.+.+.++|....|+|+...+....
T Consensus 2 ~~irvyvasssg~~---eik~kqqevv~~Ld~~ki~fk~~di~~~e 44 (108)
T KOG4023|consen 2 MVIRVYVASSSGST---EIKKKQQEVVRFLDANKIGFKEIDITAYE 44 (108)
T ss_pred CceEEEEecCCCch---HHHhhhhhhhhhhhcccCCcceeeccchh
Confidence 67888886554411 11112567888999999999988876543
No 176
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.32 E-value=37 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHhcCCCceEEec
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLI 42 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v 42 (149)
--|++|+.-+|+..|++|+...-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 45799999999999999997743
No 177
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=42.62 E-value=23 Score=16.27 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCCChhHHHHHHHHHhcCC
Q 032004 17 LGDCPFSQRALLTLEEKKV 35 (149)
Q Consensus 17 ~~~~~~~~~vr~~L~~~gi 35 (149)
-+++.|+.|.++.|...++
T Consensus 4 ~NY~~W~~~M~~~L~~~~l 22 (27)
T PF13961_consen 4 TNYSTWKIRMKAYLESQDL 22 (27)
T ss_pred cCHHHHHHHHHHHHHHcch
Confidence 4567789999999988774
No 178
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=39.72 E-value=91 Score=19.23 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhh---hhCC---CCCccEEEeCCe-eeecHHHHHHHHHhh
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFM---EISP---EGKVPVVKFDDK-WVADSDVIVRIIEEK 83 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~---~~~p---~~~~P~L~~~~~-~i~es~~I~~yl~~~ 83 (149)
+.||+|.+..-.+...+..-....++..+. ..+.. ...+ ...+-+ ..+|. +...+.|+.+-+...
T Consensus 5 g~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 5 GDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 359999999888887765333334443221 11111 1221 223333 45665 899999988876553
No 179
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.36 E-value=1e+02 Score=20.14 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCCCCCCChhHHHHHH----HHHhcCCCceEEecCCCCCchhhhhhCCC-------CCccEEEe-C--CeeeecHHHHHH
Q 032004 13 APDILGDCPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPE-------GKVPVVKF-D--DKWVADSDVIVR 78 (149)
Q Consensus 13 ~~~~~~~~~~~~~vr~----~L~~~gi~~~~~~v~~~~~~~~~~~~~p~-------~~~P~L~~-~--~~~i~es~~I~~ 78 (149)
+-+....||.|.++.= +|+++..+...+.+...+.+.|--..||+ --+|+|.- + ...+.+...-..
T Consensus 38 ~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~ 117 (128)
T KOG3425|consen 38 DTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLND 117 (128)
T ss_pred CCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHH
Confidence 4455678999988654 57777778888877777654443333443 35888853 2 345566555555
Q ss_pred HHHh
Q 032004 79 IIEE 82 (149)
Q Consensus 79 yl~~ 82 (149)
.|.+
T Consensus 118 ~Lve 121 (128)
T KOG3425|consen 118 HLVE 121 (128)
T ss_pred HHHH
Confidence 5443
No 180
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=34.77 E-value=38 Score=23.66 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=18.2
Q ss_pred CCeeeecHHHHHHHHHhhCC
Q 032004 66 DDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 66 ~~~~i~es~~I~~yl~~~~~ 85 (149)
.+..|+||..|.+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45789999999999999998
No 181
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=34.36 E-value=2.1e+02 Score=21.79 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=39.0
Q ss_pred eeecHHHHHHHHHhhCCCCCCCCcHHHHhhccchhHHHH---HhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccCC
Q 032004 69 WVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSFV---NFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGE 145 (149)
Q Consensus 69 ~i~es~~I~~yl~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G~ 145 (149)
..+||..--+|+.....=...+|..++.-+.-.=-..++ ..+..+......++.+-..++.+-..|.. .++|+-|+
T Consensus 236 n~~EsletFewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~ 314 (370)
T KOG3029|consen 236 NMGESLETFEWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGK 314 (370)
T ss_pred ChhhHHHHHHHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCC
Confidence 456666666666554321223455554322111001111 11221222222456666666666666653 36999999
Q ss_pred CCCC
Q 032004 146 KVNA 149 (149)
Q Consensus 146 ~~sl 149 (149)
+++|
T Consensus 315 kPnL 318 (370)
T KOG3029|consen 315 KPNL 318 (370)
T ss_pred CCch
Confidence 9875
No 182
>PRK09266 hypothetical protein; Provisional
Probab=34.24 E-value=59 Score=23.72 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=40.2
Q ss_pred HHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCC
Q 032004 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (149)
Q Consensus 29 ~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~ 85 (149)
.++..|+++++..++..+ ..+-|.-.+..|-+|+-..++..+.....+.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 355678999988887643 233466666679999998888777655677777766654
No 183
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.37 E-value=67 Score=21.67 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCCch
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQ 49 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~~~ 49 (149)
-+.+++++-.|++.|++|+.+..+.-..++
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR~p~ 42 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHRTPE 42 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTSHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHH
Confidence 467999999999999999987766544443
No 184
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.81 E-value=70 Score=19.62 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCCceEEecCCCCCchhhhhhCCCCCccEEEeCCeeeecHHHHHHHHHhhCCCCC
Q 032004 21 PFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS 88 (149)
Q Consensus 21 ~~~~~vr~~L~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~~~~~~i~es~~I~~yl~~~~~~~~ 88 (149)
|-+...--.|+..|.++-...=+....+.++.+.--...+| ++.+.+++-..++.+||.+..+...
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~~~~~~ 82 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEHKGGKK 82 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhcCCCCE
Confidence 44666666788889888776544333445554322222355 3456789999999999999765443
No 185
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=27.65 E-value=1.4e+02 Score=17.82 Aligned_cols=45 Identities=9% Similarity=-0.130 Sum_probs=26.6
Q ss_pred CChhHHHHHHHH-------H-hcCCCceEEecCCCCC---chhhhhhCCCCCccEEE
Q 032004 19 DCPFSQRALLTL-------E-EKKVPYKRHLINISDK---PQWFMEISPEGKVPVVK 64 (149)
Q Consensus 19 ~~~~~~~vr~~L-------~-~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~P~L~ 64 (149)
.|++|++..-.+ + ..+ .+....++.... ..++.+......+|++.
T Consensus 22 wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 22 WCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 599999876433 1 122 455555554332 34566666677899884
No 186
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=26.36 E-value=1.6e+02 Score=27.02 Aligned_cols=82 Identities=15% Similarity=0.244 Sum_probs=42.7
Q ss_pred eeeecHHHHHHHHHhhCC-CCCCCCcH---HHHhhccchhHHHHHhhccCCC---ChhHHHHHHHHHH-------HHHHH
Q 032004 68 KWVADSDVIVRIIEEKYP-EPSLTNPP---EFASLGSKIFPSFVNFLKSKDP---NDGTEQALLEELK-------ALDEH 133 (149)
Q Consensus 68 ~~i~es~~I~~yl~~~~~-~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~-------~le~~ 133 (149)
.++.-+..|+..+++..| +..|+||. .-..+.+..+...+..+..+-+ ..+.+..+...+. -+.+.
T Consensus 797 iVv~Ntn~iad~ie~i~Pik~~LytPkie~a~e~v~~lty~~A~~iYG~pLP~IVe~RiEKEL~sII~nGFaViYlISq~ 876 (1444)
T COG2176 797 IVVENTNKIADMIEDIQPIKDKLYTPKIEGAEEKVRDLTYEKAHKIYGDPLPEIVEQRIEKELNSIIGNGFAVIYLISQK 876 (1444)
T ss_pred HhhcCcHHHHHHhhcceecccCCCCCccCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHcCCeeehhHHHHH
Confidence 467888899999999777 34677642 2222333333333343332211 1334444444321 11233
Q ss_pred HhhC--CCCcccCCCCCC
Q 032004 134 LKTH--GGPFIAGEKVNA 149 (149)
Q Consensus 134 L~~~--~~~yl~G~~~sl 149 (149)
|-++ ..+||+|++-|+
T Consensus 877 LVkkS~~dGYlVGSRGSV 894 (1444)
T COG2176 877 LVKKSLDDGYLVGSRGSV 894 (1444)
T ss_pred HHHhhccCCeEecCCCcc
Confidence 3322 358999998774
No 187
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=25.74 E-value=1.3e+02 Score=16.72 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHh-----cCCCceEEecCCCCCchhhhhhCCCCCccEEE--eCCe
Q 032004 19 DCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDK 68 (149)
Q Consensus 19 ~~~~~~~vr~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~P~L~--~~~~ 68 (149)
.|++|....-.++. .++.+-.+. ... ..++.+......+|++. .+|.
T Consensus 21 ~C~~C~~~~~~~~~~~~~~~~~~~~~i~--~~~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 21 WCGPCKAIAPVLEELAEEYPKVKFVKVD--VDE-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CChhHHHhhHHHHHHHHHCCCceEEEEE--CCC-ChhHHHhcCcccccEEEEEECCE
Confidence 49999988888776 444444333 322 23455555667799875 3554
No 188
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.64 E-value=1e+02 Score=15.23 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.1
Q ss_pred CCCccEEEeCCeeeecHHHHHHHHH
Q 032004 57 EGKVPVVKFDDKWVADSDVIVRIIE 81 (149)
Q Consensus 57 ~~~~P~L~~~~~~i~es~~I~~yl~ 81 (149)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678887667777888888888765
No 189
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=23.90 E-value=2e+02 Score=18.67 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHhcCCCceEEecCCCCCch---------hhhhhCCCCCccEEEeCCeee
Q 032004 30 LEEKKVPYKRHLINISDKPQ---------WFMEISPEGKVPVVKFDDKWV 70 (149)
Q Consensus 30 L~~~gi~~~~~~v~~~~~~~---------~~~~~~p~~~~P~L~~~~~~i 70 (149)
|+..|++++.... ...+. ++++......+|+...||.++
T Consensus 36 Lk~~gv~v~RyNL--~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 36 LKEQGVEVERYNL--AQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIV 83 (123)
T ss_dssp HHHTT-EEEEEET--TT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEE
T ss_pred HHhCCceEEEEcc--ccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEE
Confidence 5667777665554 43333 345555667899998777543
No 190
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.18 E-value=40 Score=27.88 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=41.8
Q ss_pred CeeeecHHHHHHHHHhhCCC-CCCCCc-HHHHhhccchhHHHHHhhccCCCChhHHHHHHHHHHHHHHHHhhCCCCcccC
Q 032004 67 DKWVADSDVIVRIIEEKYPE-PSLTNP-PEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAG 144 (149)
Q Consensus 67 ~~~i~es~~I~~yl~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~yl~G 144 (149)
+..+..+..+..|....... +.+++. .++.++..|...... .....+...+..+++.|.-. .||+|
T Consensus 45 ~~~l~~a~~~~~~~~~~~~~~~~lf~~~~d~~~vd~w~~~s~~----------~~~~~~s~~~~~ld~~l~~~--t~lvg 112 (712)
T KOG1147|consen 45 GRKLNGATEPVVYSAALAKADPKLFGNNIDRSQVDHWVSFSST----------FSFDEISSSLSELDKFLVLR--TFLVG 112 (712)
T ss_pred cccccCCccchhhhhhhcccCHhHcCCcccHHHHHHHHHHhhh----------cchHHHHHHHHHHHhhhhHH--HHhhc
Confidence 34444444555554433222 235543 577777777655432 12345666777888888877 88888
Q ss_pred CCCCC
Q 032004 145 EKVNA 149 (149)
Q Consensus 145 ~~~sl 149 (149)
+++|+
T Consensus 113 ~sls~ 117 (712)
T KOG1147|consen 113 NSLSI 117 (712)
T ss_pred cchhH
Confidence 87764
No 191
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=23.14 E-value=1.5e+02 Score=20.19 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhC-CCCcccCCC-CC
Q 032004 123 LLEELKALDEHLKTH-GGPFIAGEK-VN 148 (149)
Q Consensus 123 l~~~l~~le~~L~~~-~~~yl~G~~-~s 148 (149)
-.+++..|++.|+.. ..+|++|+. +|
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~ps 140 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPS 140 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCC
Confidence 457789999999875 457888886 54
No 192
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=21.57 E-value=1.7e+02 Score=19.88 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHhcCCCceEEecCCCCCc
Q 032004 20 CPFSQRALLTLEEKKVPYKRHLINISDKP 48 (149)
Q Consensus 20 ~~~~~~vr~~L~~~gi~~~~~~v~~~~~~ 48 (149)
-+..+++...|+..|++|+....+.-..+
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp 39 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTP 39 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCH
Confidence 46789999999999999998877654433
No 193
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=20.74 E-value=2.3e+02 Score=17.64 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=7.9
Q ss_pred CChhHHHHHH
Q 032004 19 DCPFSQRALL 28 (149)
Q Consensus 19 ~~~~~~~vr~ 28 (149)
.|++|++..-
T Consensus 25 wC~~C~~~~~ 34 (125)
T cd02951 25 GCPYCDKLKR 34 (125)
T ss_pred CCHHHHHHHH
Confidence 4999998763
No 194
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=20.54 E-value=65 Score=15.34 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=12.0
Q ss_pred EecCCCCCchhhhhhCCCC
Q 032004 40 HLINISDKPQWFMEISPEG 58 (149)
Q Consensus 40 ~~v~~~~~~~~~~~~~p~~ 58 (149)
....+....++|+..+|..
T Consensus 11 ~dF~ID~t~~~yk~~~~~~ 29 (30)
T PF08159_consen 11 PDFAIDPTSPEYKKTNPME 29 (30)
T ss_pred cccccCCCCHHHHhhCccc
Confidence 3344455677888888753
No 195
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=20.43 E-value=2.2e+02 Score=22.96 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHhcCC---CceEEecCCC--CCchhhhh---hCCC--CCccEE----Ee-C--CeeeecHHHHHHHH
Q 032004 18 GDCPFSQRALLTLEEKKV---PYKRHLINIS--DKPQWFME---ISPE--GKVPVV----KF-D--DKWVADSDVIVRII 80 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi---~~~~~~v~~~--~~~~~~~~---~~p~--~~~P~L----~~-~--~~~i~es~~I~~yl 80 (149)
..|||=-|+.++..+... +|..+.+..- ...+|+.+ .|.+ .+.|++ +| + |..|+....-++|+
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 359999999999877654 6777766432 23344433 3433 689998 34 3 47899999999999
Q ss_pred HhhCCCC
Q 032004 81 EEKYPEP 87 (149)
Q Consensus 81 ~~~~~~~ 87 (149)
..-|+-.
T Consensus 82 ~~yyg~~ 88 (452)
T cd05295 82 ESYYGIT 88 (452)
T ss_pred HHHhCcc
Confidence 9999843
No 196
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=20.26 E-value=2.8e+02 Score=18.47 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHHhcCCCceEEecCCCCC-chhhhhhCCCCC-ccE---EEeCCeeeecHHHHHHHHHhhC
Q 032004 18 GDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEISPEGK-VPV---VKFDDKWVADSDVIVRIIEEKY 84 (149)
Q Consensus 18 ~~~~~~~~vr~~L~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~-~P~---L~~~~~~i~es~~I~~yl~~~~ 84 (149)
+.||.|-...-.|..+...-..+..++... ....+...+... .+. ++++|..+.+|.|+++-+...-
T Consensus 16 G~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 16 GVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 358998777777777666555555554432 233444444321 122 2467899999999998887765
No 197
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=20.06 E-value=1.2e+02 Score=21.66 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=35.9
Q ss_pred HHHhcCCCceEEecCCCC---CchhhhhhCCCCCccEEEeCCeee--ecHHHHHHHHHh
Q 032004 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRIIEE 82 (149)
Q Consensus 29 ~L~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~P~L~~~~~~i--~es~~I~~yl~~ 82 (149)
.++..|+++++..++..+ ..+-|.-.+..|-+|+-..++..+ .....|.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHH
Confidence 466789999988887543 233355556568899998777665 344566666644
No 198
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=20.04 E-value=1.2e+02 Score=17.30 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.2
Q ss_pred eecHHHHHHHHHhhCCC
Q 032004 70 VADSDVIVRIIEEKYPE 86 (149)
Q Consensus 70 i~es~~I~~yl~~~~~~ 86 (149)
+++|..|+.-|.++||+
T Consensus 2 W~D~~eIA~~L~e~~pd 18 (63)
T TIGR03412 2 WTDSQEIAIALAEAHPD 18 (63)
T ss_pred ccCHHHHHHHHHHHCCC
Confidence 57899999999999995
Done!