BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032005
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
 pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
 pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
 pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
           Coenzyme A
 pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
           Coenzyme A
 pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
           Coenzyme A
 pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
           Coenzyme A
 pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
           Coenzyme A
 pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
           Coenzyme A
 pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
           Beta-Gal
 pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
           Beta-Gal
 pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
           Beta-Gal
          Length = 203

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 52  ATFNISAVTGQAVYGGKVV-----INVAYFGVPVHQETRDVCEEVSCPIAAGD--FVLSH 104
           A FN++ V    V  G  V     + ++  G PVH E R   E  S PI  G+  ++ SH
Sbjct: 84  ANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSH 143

Query: 105 TQTLPSFT 112
               P  T
Sbjct: 144 VVINPGVT 151


>pdb|3UCP|A Chain A, Outer Membrane Endecaheme Cytochrome Unda From Shewanella
           Sp. Hrcr-6
 pdb|3UFH|A Chain A, Crystal Structure Of Unda With Iron Citrate Bound
 pdb|3UFK|A Chain A, Crystal Structure Of Unda Complexed With Iron
           Nitrilotriacetate
          Length = 874

 Score = 27.7 bits (60), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 52  ATFNISAVTGQAV-YGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHT 105
            T+ +   +G A  + G +    A  G P ++E +DV E V+ P++ G+    H+
Sbjct: 313 GTYAMVGYSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSCHS 367


>pdb|3U0O|A Chain A, The Crystal Structure Of Selenophosphate Synthetase From
           E. Coli
 pdb|3U0O|B Chain B, The Crystal Structure Of Selenophosphate Synthetase From
           E. Coli
          Length = 347

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 41  IIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVS 92
           I+ +P   G+ A  N  A++     GGK ++ +A  G P+++ + ++  EV+
Sbjct: 73  IVDNPFDFGRIAATN--AISDIFAMGGKPIMAIAILGWPINKLSPEIAREVT 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,400,482
Number of Sequences: 62578
Number of extensions: 174392
Number of successful extensions: 349
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 12
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)