Query 032005
Match_columns 149
No_of_seqs 130 out of 680
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 13:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nep_A EPV20, BNPC2, epididyma 100.0 2.1E-32 7.1E-37 189.9 13.8 123 19-141 1-129 (130)
2 1xwv_A DER F II; beta sheets, 100.0 3.5E-32 1.2E-36 188.5 11.4 122 20-142 2-129 (129)
3 2ag4_A GM2-AP, ganglioside GM2 99.9 1E-22 3.5E-27 146.1 13.3 120 20-141 4-162 (164)
4 3m7o_A Lymphocyte antigen 86; 99.9 8.7E-23 3E-27 144.1 12.3 114 21-139 40-160 (162)
5 3mtx_A Protein MD-1; LY86, RP1 99.8 6.3E-19 2.2E-23 122.3 13.9 117 20-141 18-141 (151)
6 3vq2_C Lymphocyte antigen 96; 99.8 2.1E-17 7.3E-22 114.2 14.0 119 20-142 15-141 (144)
7 2e56_A Lymphocyte antigen 96; 99.5 1.8E-12 6.1E-17 88.5 14.4 119 20-142 15-141 (144)
8 1kmt_A RHO GDP-dissociation in 95.0 0.19 6.6E-06 34.4 8.4 95 46-143 41-138 (141)
9 1ds6_B RHO GDP-dissociation in 94.4 0.24 8.1E-06 35.3 7.9 95 46-143 80-177 (180)
10 1doa_B RHO GDI 1, protein (GDP 93.7 0.35 1.2E-05 35.5 7.9 95 46-143 119-216 (219)
11 2r5o_A Putative ATP binding co 93.7 1.2 4.2E-05 31.4 10.8 93 33-127 47-149 (188)
12 3idu_A Uncharacterized protein 93.5 1.1 3.7E-05 30.0 9.5 79 33-124 18-97 (127)
13 2vtc_A CEL61B, cellulase; hydr 92.7 0.37 1.3E-05 36.1 6.9 39 103-141 160-206 (249)
14 1lyq_A PCOC copper resistance 90.7 0.63 2.2E-05 30.0 5.5 34 103-137 68-102 (104)
15 2c9r_A COPC, copper resistance 90.1 0.8 2.7E-05 29.4 5.6 34 103-137 66-100 (102)
16 3eja_A Protein GH61E; beta san 89.4 1.3 4.4E-05 32.2 6.8 39 102-140 117-163 (208)
17 4eir_A Polysaccharide monooxyg 88.8 1.7 5.7E-05 32.0 7.1 38 103-140 133-178 (223)
18 2f1e_A Protein APAG; APAG prot 87.4 3.9 0.00013 27.3 7.7 46 95-142 76-122 (127)
19 1xq4_A Protein APAG; all beta 87.4 3.3 0.00011 28.1 7.4 50 92-143 76-127 (139)
20 1xvs_A Protein APAG; MCSG APC2 87.1 3.8 0.00013 27.3 7.5 46 95-142 75-121 (126)
21 1tza_A APAG protein, SOR45; st 86.6 4.3 0.00015 27.4 7.6 46 95-142 75-121 (134)
22 4eis_A Polysaccharide monooxyg 86.4 2.5 8.6E-05 31.1 6.8 37 103-139 136-180 (225)
23 3zud_A GH61 isozyme A; hydrola 83.9 3.2 0.00011 30.5 6.4 37 103-139 140-184 (228)
24 1v10_A Laccase; multicopper bl 82.9 2.6 8.7E-05 34.6 6.2 15 91-105 104-119 (521)
25 2l0d_A Cell surface protein; s 82.9 7.6 0.00026 25.3 9.8 80 33-123 4-84 (114)
26 2kut_A Uncharacterized protein 80.1 2.3 7.9E-05 28.2 4.0 82 39-124 5-93 (122)
27 3isy_A Bsupi, intracellular pr 77.6 13 0.00043 24.5 8.5 77 48-126 16-104 (120)
28 1nep_A EPV20, BNPC2, epididyma 77.4 2.8 9.4E-05 27.8 3.9 38 86-123 21-59 (130)
29 1xwv_A DER F II; beta sheets, 77.4 3.1 0.00011 27.6 4.1 38 86-123 19-58 (129)
30 3c12_A FLGD, flagellar protein 71.3 2.8 9.5E-05 28.1 2.7 36 95-130 61-98 (138)
31 3m7o_A Lymphocyte antigen 86; 64.3 9 0.00031 26.6 4.1 30 44-73 112-142 (162)
32 3pe9_A Fibronectin(III)-like m 59.5 26 0.0009 21.9 5.5 78 46-144 13-90 (98)
33 2p9r_A Alpha-2-M, alpha-2-macr 59.2 23 0.00079 21.8 5.2 22 102-123 63-84 (102)
34 3exz_A MAOC-like dehydratase; 50.4 43 0.0015 22.2 5.8 52 92-143 89-145 (154)
35 1pfs_A PF3 SSDBP, PF3 single-s 50.2 39 0.0013 20.2 4.7 26 103-128 39-64 (78)
36 2idc_A Anti-silencing protein 50.0 52 0.0018 23.1 6.1 72 33-109 5-81 (179)
37 3mtx_A Protein MD-1; LY86, RP1 48.7 31 0.0011 23.6 4.7 33 44-76 91-126 (151)
38 4dbg_A Ranbp-type and C3HC4-ty 48.7 18 0.00062 23.1 3.3 35 109-146 15-49 (105)
39 3vmn_A Dextranase; TIM barrel, 46.1 94 0.0032 26.3 8.0 93 45-143 17-114 (643)
40 3pdd_A Glycoside hydrolase, fa 45.8 73 0.0025 22.1 10.5 76 48-145 107-183 (190)
41 3zx1_A Oxidoreductase, putativ 44.2 19 0.00064 29.2 3.6 16 91-106 121-137 (481)
42 4ffu_A Oxidase; structural gen 44.0 71 0.0024 21.8 6.2 51 92-142 114-169 (176)
43 4f27_A Clumping factor B; DEV- 43.8 42 0.0014 25.5 5.4 42 32-73 38-82 (363)
44 2hue_A Anti-silencing protein 43.6 81 0.0028 22.1 6.2 73 32-109 8-85 (175)
45 2h6o_A Major outer envelope gl 43.4 43 0.0015 26.2 5.2 93 47-142 174-307 (470)
46 2xom_A Arabinogalactan endo-1, 43.2 72 0.0025 21.3 6.7 29 100-130 59-87 (152)
47 3tas_A Small laccase, multi-co 42.4 17 0.00057 27.5 2.8 55 47-109 47-102 (313)
48 3t9w_A Small laccase, multi-co 39.7 19 0.00064 27.1 2.7 17 91-107 99-116 (299)
49 1dyo_A Endo-1,4-beta-xylanase 39.5 82 0.0028 21.1 5.8 35 95-129 65-100 (160)
50 2le2_A P56; UDG inhibition, DN 39.3 26 0.0009 19.2 2.5 17 115-131 8-24 (56)
51 3sqr_A Laccase; multicopper ox 38.7 32 0.0011 28.6 4.2 16 91-106 143-159 (580)
52 3osv_A Flagellar basal-BODY RO 38.1 30 0.001 22.9 3.3 15 111-125 77-91 (138)
53 1q6w_A Monoamine oxidase regul 37.4 84 0.0029 20.7 5.6 48 93-140 105-155 (161)
54 2zwn_A Two-domain type laccase 36.7 36 0.0012 25.9 4.0 16 91-106 79-95 (339)
55 1aoz_A Ascorbate oxidase; oxid 36.6 34 0.0012 28.0 4.0 16 91-106 79-95 (552)
56 1iq6_A (R)-hydratase, (R)-spec 34.9 83 0.0028 19.6 6.3 17 115-131 108-124 (134)
57 1b4r_A Protein (PKD1_human); P 34.6 75 0.0026 19.0 4.5 19 114-132 54-72 (80)
58 2kps_A Uncharacterized protein 33.8 31 0.0011 21.5 2.6 33 95-127 55-88 (98)
59 1roc_A Anti-silencing protein 32.5 1.2E+02 0.0041 20.8 9.0 77 33-114 4-87 (155)
60 3kw8_A Laccase, putative coppe 31.8 39 0.0013 24.9 3.4 17 91-107 77-94 (276)
61 1hfu_A Laccase 1; oxidoreducta 31.5 34 0.0011 27.7 3.1 15 91-105 83-98 (503)
62 1suj_A CONE arrestin; sensory 31.2 1.9E+02 0.0066 22.8 10.0 29 96-124 104-148 (392)
63 2y72_A Collagenase, collagenas 30.3 87 0.003 18.5 5.2 18 113-130 57-74 (85)
64 3vq2_C Lymphocyte antigen 96; 29.9 85 0.0029 21.2 4.4 33 44-76 89-124 (144)
65 1ex0_A Coagulation factor XIII 29.8 86 0.0029 27.0 5.4 80 46-127 76-167 (731)
66 2f68_X Collagen adhesin; beta 28.4 50 0.0017 25.1 3.5 41 33-73 14-56 (313)
67 1gu3_A Endoglucanase C; carboh 25.9 1.5E+02 0.0051 19.7 6.1 63 45-115 53-115 (149)
68 2r7e_B Coagulation factor VIII 25.3 25 0.00086 30.3 1.4 53 46-105 203-256 (770)
69 1vjj_A Protein-glutamine gluta 24.3 1.3E+02 0.0045 25.7 5.5 78 45-126 30-119 (692)
70 2q9o_A Laccase-1; multicopper 24.3 90 0.0031 25.6 4.5 16 91-106 112-129 (559)
71 3cg8_A Laccase; oxidoreductase 24.0 60 0.002 24.8 3.2 17 91-107 118-135 (343)
72 2i32_A Anti-silencing factor 1 23.9 1.9E+02 0.0066 20.3 6.0 78 32-114 27-111 (182)
73 2z1p_A ACE, collagen adhesin p 23.1 53 0.0018 25.5 2.7 41 33-73 17-60 (348)
74 2io5_A ASF1A protein; chaperon 23.0 2E+02 0.0067 20.1 5.8 78 32-114 5-89 (175)
75 3t6v_A Laccase; beta barrel, o 22.1 43 0.0015 27.1 2.1 16 91-106 84-100 (495)
76 2r51_A Vacuolar protein sortin 21.8 2.8E+02 0.0094 21.3 7.3 75 46-124 44-139 (340)
77 3pxl_A Laccase; 4-copper prote 21.8 44 0.0015 27.1 2.1 16 91-106 83-99 (499)
78 3klq_A Putative pilus anchorin 21.7 1.9E+02 0.0064 19.4 5.5 38 96-134 59-102 (141)
79 2qsv_A Uncharacterized protein 21.0 1.3E+02 0.0045 21.2 4.4 41 20-63 139-188 (220)
80 1w8o_A Bacterial sialidase; 3D 20.8 2.8E+02 0.0095 22.3 6.9 37 95-131 411-448 (601)
81 2uxt_A Protein SUFI, SUFI; oxi 20.0 46 0.0016 26.5 1.9 16 91-106 89-105 (451)
No 1
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=100.00 E-value=2.1e-32 Score=189.90 Aligned_cols=123 Identities=16% Similarity=0.354 Sum_probs=112.5
Q ss_pred CccceeeCCCCCC--ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccC--CcCCCC-CCCC
Q 032005 19 QAIGVKYCDKKKN--YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCE-EVSC 93 (149)
Q Consensus 19 ~~~~~~~C~~~~~--~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~--~~d~C~-~~~C 93 (149)
++++|++|++..+ ..++|++|+..||+++||+++++++.|++++++++++..+.+.++|+++|++ +.|+|+ +..|
T Consensus 1 ~~~~f~~C~~~~~~i~~V~V~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~C 80 (130)
T 1nep_A 1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC 80 (130)
T ss_dssp CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred CCcEEEECCCCCCeEeEEEECCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcC
Confidence 3579999998643 4788888888888999999999999999999999999999999999999865 689997 5899
Q ss_pred CCCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEc
Q 032005 94 PIAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIG 141 (149)
Q Consensus 94 Pl~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~ 141 (149)
|+++|+ |+|+++++|++.||.++|+++|+|+|++|+.++||+++++|+
T Consensus 81 Pl~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~~l~C~~~~~~I~ 129 (130)
T 1nep_A 81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVE 129 (130)
T ss_dssp SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred cccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence 999998 999999999999999999999999999999999999999996
No 2
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=99.98 E-value=3.5e-32 Score=188.47 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=113.8
Q ss_pred ccceeeCCCCCCccEEEeEE-EEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccC--CcCCCCCCCCCCC
Q 032005 20 AIGVKYCDKKKNYAVTIQQV-KIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCEEVSCPIA 96 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~-~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~--~~d~C~~~~CPl~ 96 (149)
+++|++|+++....++|++| +..||+++||++++++++|++++++++++..+.+.++|+++|++ ..|+|++..||++
T Consensus 2 ~~~~~~C~~~~~~~V~V~~C~~~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~ 81 (129)
T 1xwv_A 2 QVDVKDCANNEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLV 81 (129)
T ss_dssp BBCCEESSSSCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBC
T ss_pred CceEEECcCCCccEEEECCCCCCCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCccc
Confidence 57999999875568899999 89999999999999999999999999999999999999999875 7899999999999
Q ss_pred CCe-EEEEEEEEcCCCCCCee-EEEEEEEEcCCCCEEEEE-EEEEEEcc
Q 032005 97 AGD-FVLSHTQTLPSFTPPGS-YTLKMTMEDKNNEELTCF-SFNFKIGF 142 (149)
Q Consensus 97 ~G~-~~~~~~~~ip~~~P~g~-~~v~~~l~d~~~~~~~C~-~~~v~i~~ 142 (149)
+|+ |+|+++++|++.||.++ |+++|+|+|++| .++|| +++++|++
T Consensus 82 ~G~~~~y~~~~~v~~~~P~v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~ 129 (129)
T 1xwv_A 82 KGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNG-VLACAIATHAKIRD 129 (129)
T ss_dssp TTCEEEEEEEEECCTTSCCBSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred CCEEEEEEEEeEecccCCCCceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence 998 99999999999999999 999999999988 89999 99999974
No 3
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=99.89 E-value=1e-22 Score=146.07 Aligned_cols=120 Identities=20% Similarity=0.477 Sum_probs=103.4
Q ss_pred ccceeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEeccc-EEEEEEEE--CC--EEeccCC-------cCC
Q 032005 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAY--FG--VPVHQET-------RDV 87 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~--~g--i~v~~~~-------~d~ 87 (149)
.+.|++|++. .+.++|++++++|.|+++|+++++++++++.++++++ ++++.+.+ +| +++|..+ .|+
T Consensus 4 ~~~~~~C~~~-~~~~~i~~v~i~PdP~~~g~~~ti~~~~~l~~~i~~g~k~~v~v~~~~~g~~i~l~~~~~~GSC~y~Dl 82 (164)
T 2ag4_A 4 SFSWDNCDEG-KDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHF 82 (164)
T ss_dssp CCEEEESSTT-TCSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEECCH
T ss_pred cCEEecCCCC-CceEEEeEEEEeCCCCCCCCceEEEEEEEEeeccCCCCEEEEEEEEEecCceEEeeeeCCcCcccccch
Confidence 5789999886 4589999999999999999999999999999999998 57666554 44 5677665 799
Q ss_pred CCCC---------------------CCCCCCCeEEEEEEE------EcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEE
Q 032005 88 CEEV---------------------SCPIAAGDFVLSHTQ------TLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKI 140 (149)
Q Consensus 88 C~~~---------------------~CPl~~G~~~~~~~~------~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i 140 (149)
|+.+ +||+++|.|+.+.+. .+|+++|+|+|++++.+.+ +|++++|+++.+.|
T Consensus 83 C~~l~~~~~~~~~~~~~~~~~g~~~~CPi~~G~Y~l~~~~~~lp~~~lP~~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l 161 (164)
T 2ag4_A 83 CDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSS-SGKRLGCIKIAASL 161 (164)
T ss_dssp HHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred hHhhhhhcccccccCcccccCCccccCCCCCcEEEEeeeEeecCcccccCccCCceEEEEEEEec-CCCEEEEEEEEEEE
Confidence 9742 899999999877665 7889999999999999977 78899999999998
Q ss_pred c
Q 032005 141 G 141 (149)
Q Consensus 141 ~ 141 (149)
.
T Consensus 162 ~ 162 (164)
T 2ag4_A 162 K 162 (164)
T ss_dssp E
T ss_pred E
Confidence 6
No 4
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*
Probab=99.89 E-value=8.7e-23 Score=144.13 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=102.4
Q ss_pred cceeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCC
Q 032005 21 IGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPI 95 (149)
Q Consensus 21 ~~~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl 95 (149)
+.|++|++..+ + +++++||++++|++.++++.|.++++++.+.+++.+.+++++++..++|+|++ ..||+
T Consensus 40 v~Y~~CD~~q~--~---~vsi~PC~~~~G~nl~i~a~~Ilr~dI~~ly~~l~v~~~~i~l~~~~~~lCe~~~~~~sfCp~ 114 (162)
T 3m7o_A 40 VVYQSCDPLQD--F---GLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGR 114 (162)
T ss_dssp EEEEECCTTCC--C---EEEESSCCSEECSSCEEEEEEECSSCCSEEEEEEEEEETTEEEEEEEEEEEETTBSSSSSTTC
T ss_pred EEEEeCCCCCC--c---eEECCCCCCCCCCcEEEEEEEEEcccceeeEEEEEEEECCEEccccccccccCCCCccccCCc
Confidence 46799988753 3 55899999999999999999999999998788999999999999888999985 57999
Q ss_pred CCCe-EEEEEEEEcCC-CCCCeeEEEEEEEEcCCCCEEEEEEEEEE
Q 032005 96 AAGD-FVLSHTQTLPS-FTPPGSYTLKMTMEDKNNEELTCFSFNFK 139 (149)
Q Consensus 96 ~~G~-~~~~~~~~ip~-~~P~g~~~v~~~l~d~~~~~~~C~~~~v~ 139 (149)
++|+ ++++..+.+|+ .+|+|+|++.++++++|++.++|.++.+.
T Consensus 115 ~KGE~v~~~~~v~~p~~e~P~G~Y~v~aea~~~d~~~i~Cln~TIi 160 (162)
T 3m7o_A 115 RKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVACANATVT 160 (162)
T ss_dssp CTTCEEEEEEECCCCEEECCSEEEEEEEEEEETTCCEEEEEEEEEE
T ss_pred CCCeEEEEEEEeecCceecCCCcEEEEEEEEcCCCCEEEEeEEEEE
Confidence 9999 58899999998 59999999999999999999999999653
No 5
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*
Probab=99.81 E-value=6.3e-19 Score=122.32 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=106.2
Q ss_pred ccceeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCC
Q 032005 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCP 94 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CP 94 (149)
.+.|+.|++-. .+ +++++||+-.+|++.+|++.+.+.++++.+.+.+.+.++++.++...+++|++ .-||
T Consensus 18 ei~Y~~CD~~q--~~---~isi~pC~~~~~~~l~I~~~~IlR~dIkelY~~l~v~~~~~~ll~~~e~LCe~~~~~~sfC~ 92 (151)
T 3mtx_A 18 EIYYKSCDPQQ--DF---AFSIDRCSDVTTHTFDIRAAMVLRQSIKELYAKVDLIINGKTVLSYSETLCGPGLSKLIFCG 92 (151)
T ss_dssp EEEEEECCTTC--CC---EEEESCGGGGGGTEEEEEEEEECCSCCSSEEEEEEEEETTEEEEEEEEEEESTTCCCSTTTT
T ss_pred EEEEEecCCcc--Cc---EEEcccCccccCCcEEEEEEEEEhhhhheeEEEEEEEECcEeeeecccccccCCCCcccccC
Confidence 47789998765 33 77899999999999999999999999999899999999999999999999985 5799
Q ss_pred CCCCeE-EEEEEEEcCC-CCCCeeEEEEEEEEcCCCCEEEEEEEEEEEc
Q 032005 95 IAAGDF-VLSHTQTLPS-FTPPGSYTLKMTMEDKNNEELTCFSFNFKIG 141 (149)
Q Consensus 95 l~~G~~-~~~~~~~ip~-~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~ 141 (149)
..+|+. +++..+.+|. .+|+|+|++.++++++|++.++|.++.+.-.
T Consensus 93 ~~KGE~i~~~~~v~~pg~~~p~G~Y~vvaea~~~d~~~I~CLn~Tii~~ 141 (151)
T 3mtx_A 93 KKKGEHLYYEGPITLGIKEIPQRDYTITARLTNEDRATVACADFTVKNY 141 (151)
T ss_dssp CCTTCEEEEEEEEECCCSSCCCEEEEEEEEEEETTSCEEEEEEEEEEEC
T ss_pred ccCCeeEEEEEEeecCceecCCCcEEEEEEEEcCCCCEEEEeeEEEEEE
Confidence 999995 8999999998 7999999999999999999999999988644
No 6
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*
Probab=99.76 E-value=2.1e-17 Score=114.22 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=104.6
Q ss_pred ccceeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCC
Q 032005 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCP 94 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CP 94 (149)
.+.|++|++... .+ +++++||..++|++..+++.+.++++++.+...+.+..+++.+|.-++++|.+ ..||
T Consensus 15 eV~Y~~CD~~q~-~~---~isvdpC~~~~gs~~~l~~~~IpR~Dik~Ly~~~~l~~~~~~lp~~~e~iC~g~~~~ySfCg 90 (144)
T 3vq2_C 15 IISYSYCDHLKF-PI---SISSEPCIRLRGTNGFVHVEFIPRGNLKYLYFNLFISVNSIELPKRKEVLCHGHDDDYSFCR 90 (144)
T ss_dssp EEEEEEBTTBCC-CE---EEEEESCCCTTCEEEEEEEEECCSSCCTTEEEEEEEEETTEECCCEEEESCCSSSCSSGGGG
T ss_pred EEEEEeCCCccC-Cc---EEeccccccccCCCcEEEEEEEEcCcceeEEEEEEEeecccccccCccCcccCCCCcceecc
Confidence 588999987641 33 55999999999999999999999999998888888888999998878899985 4799
Q ss_pred CCCCe-EEEEEEEEcCCC-CCCeeEEEEEEEEcCC-CCEEEEEEEEEEEcc
Q 032005 95 IAAGD-FVLSHTQTLPSF-TPPGSYTLKMTMEDKN-NEELTCFSFNFKIGF 142 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~-~P~g~~~v~~~l~d~~-~~~~~C~~~~v~i~~ 142 (149)
..+|+ +.|++.+.++.+ +|.|+|++.+++++++ .+.++|.+|.+....
T Consensus 91 ~~KGE~i~~~~~~~~~~~~fpkG~Y~~v~e~~~gd~~~~l~ClnfTii~~~ 141 (144)
T 3vq2_C 91 ALKGETVNTSIPFSFEGILFPKGHYRCVAEAIAGDTEEKLFCLNFTIIHRR 141 (144)
T ss_dssp CCTTCCEEEEEEEEECCCCCCSSEEEEEEEEEETTTTEEEEEEEEEEEC--
T ss_pred cccCcEEEEEEEeecCcEEccCCcEEEEEEEecCCcccEEEEeeEEEEEeC
Confidence 99999 899999999988 9999999999999998 778999999987554
No 7
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=99.49 E-value=1.8e-12 Score=88.52 Aligned_cols=119 Identities=15% Similarity=0.258 Sum_probs=103.5
Q ss_pred ccceeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCC
Q 032005 20 AIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCP 94 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CP 94 (149)
.+.|+.|++-. ..+ +++++||.-.+|.+..+++.+.+.+++..+...+.+..+|+.+|...+.+|.+ .-|-
T Consensus 15 ei~Y~sCD~~q-~~~---sin~~pC~~~~~~~~~l~~~~IpR~Dik~Ly~nl~l~~~~~~~~~~ke~iC~g~dd~ySFC~ 90 (144)
T 2e56_A 15 SISYTYCDKMQ-YPI---SINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCR 90 (144)
T ss_dssp EEEEEECSSCC-SCC---EEEEESCCCTTCEEEEEEEEECCSSCCTTCEEEEEEEETTEECCCEEEECSCSSSSSCGGGG
T ss_pred EEEEeecCccc-CCc---EeccchhhhhccCceEEEEEEEEhhHHHHHhhhheeeeccccccccccccccCCCCCceeec
Confidence 47899998764 233 77899999999999999999999999999999999999999999888999975 5799
Q ss_pred CCCCe-EEEEEEEEcC-CCCCCeeEEEEEEEEcCCC-CEEEEEEEEEEEcc
Q 032005 95 IAAGD-FVLSHTQTLP-SFTPPGSYTLKMTMEDKNN-EELTCFSFNFKIGF 142 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip-~~~P~g~~~v~~~l~d~~~-~~~~C~~~~v~i~~ 142 (149)
-.+|+ ..++..+..+ -.+|+|.|++.+++++++. +.++|++|.+....
T Consensus 91 ~lKGEti~t~~p~s~~g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~~ 141 (144)
T 2e56_A 91 ALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQP 141 (144)
T ss_dssp CCTTCCEEEEEEEEECCCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEECT
T ss_pred cccCceEEEeeecccCcEecCCCcEEEEEEEecCCchheEEEeeEEEEEcc
Confidence 99999 6778888877 5589999999999999665 67999999987654
No 8
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=95.00 E-value=0.19 Score=34.42 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCCCCcEEEEEEEEeCeEeccc-EEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEE-cC-CCCCCeeEEEEEE
Q 032005 46 VVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQT-LP-SFTPPGSYTLKMT 122 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~-ip-~~~P~g~~~v~~~ 122 (149)
++-|..+.++++|..++++-+| +..-.++-.|+++-.... .- |.-.|-. ..|++...-. -| ..+-.|+|+++-+
T Consensus 41 iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~-ml-Gsy~P~~-e~y~~~~~~eeaPsG~laRG~Y~a~s~ 117 (141)
T 1kmt_A 41 LKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MV-GSYGPRA-AAYEFLTPVEEAPKGMLARGSYSIKSR 117 (141)
T ss_dssp EETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE-EE-EEECCCS-SCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred ccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE-ee-eccCCCC-CcceecCCCccCCceeEEeeeeeeeEE
Confidence 6789999999999999876665 554456667887643211 00 1112322 1255433322 33 3355689999999
Q ss_pred EEcCCCCEEEEEEEEEEEccc
Q 032005 123 MEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 123 l~d~~~~~~~C~~~~v~i~~~ 143 (149)
+.|+|+....=++-.+.|.++
T Consensus 118 F~DDD~~~hl~~~w~feI~Kd 138 (141)
T 1kmt_A 118 FTDDDKTDHLSWEWNLTIKKD 138 (141)
T ss_dssp EECTTCCCSEEEEEEEEEESC
T ss_pred EEcCCCcEEEEEEEeEEEecC
Confidence 999988777778888888764
No 9
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=94.36 E-value=0.24 Score=35.34 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=62.0
Q ss_pred CCCCCcEEEEEEEEeCeEeccc-EEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEE-cC-CCCCCeeEEEEEE
Q 032005 46 VVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQT-LP-SFTPPGSYTLKMT 122 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~-ip-~~~P~g~~~v~~~ 122 (149)
++-|..+.++++|..++++-+| +..-.++-.|+++-.... .. |.-.|-. ..|++.+.-. -| .++-.|+|+++-.
T Consensus 80 iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~-ml-Gsy~P~~-e~y~~~~p~eeaPsG~laRG~Y~a~sk 156 (180)
T 1ds6_B 80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF-MV-GSYGPRP-EEYEFLTPVEEAPKGMLARGTYHNKSF 156 (180)
T ss_dssp EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEE-EE-EEECCCS-SCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred ecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceE-ee-eccCCCC-CceeecCCCccCCcceeeeeeeeeeEE
Confidence 6788999999999999866665 554456667887643211 01 1112322 1255433322 34 3455689999999
Q ss_pred EEcCCCCEEEEEEEEEEEccc
Q 032005 123 MEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 123 l~d~~~~~~~C~~~~v~i~~~ 143 (149)
+.|+|+....=++-.+.|.++
T Consensus 157 F~DDD~~~hl~~~wsfeI~Kd 177 (180)
T 1ds6_B 157 FTDDDKQDHLSWEWNLSIKKE 177 (180)
T ss_dssp EECTTCCCCEEEEEEEEEESS
T ss_pred EEcCCCceEEEEEEEEEEeeC
Confidence 999998887788888888764
No 10
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=93.73 E-value=0.35 Score=35.45 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=62.0
Q ss_pred CCCCCcEEEEEEEEeCeEeccc-EEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEE-cC-CCCCCeeEEEEEE
Q 032005 46 VVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQT-LP-SFTPPGSYTLKMT 122 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~-ip-~~~P~g~~~v~~~ 122 (149)
++-|..+.++++|..++++-++ +..-.++-.|+++-.... .. +...|-.. .|++.+.-. -| .++-.|+|+++-+
T Consensus 119 IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~-Ml-GSY~P~~e-~y~~~~p~EeAPSGmLARG~Y~akSk 195 (219)
T 1doa_B 119 LKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MV-GSYGPRAE-EYEFLTPMEEAPKGMLARGSYNIKSR 195 (219)
T ss_dssp EETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEE-EE-EEECCCSS-CEEEECCCEECCCTTSCCSEEEEEEE
T ss_pred ecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcce-ee-eccCCCCC-cccccCCCccCCccceeeeeeeeeEE
Confidence 6788899999999999865555 554456667887743211 11 11123222 255433221 33 3455689999999
Q ss_pred EEcCCCCEEEEEEEEEEEccc
Q 032005 123 MEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 123 l~d~~~~~~~C~~~~v~i~~~ 143 (149)
+.|+|+....=++-.+.|.++
T Consensus 196 F~DDD~~~hL~~eWsfeI~Kd 216 (219)
T 1doa_B 196 FTDDDRTDHLSWEWNLTIKKE 216 (219)
T ss_dssp EECTTCCCCEEEEEEEEEESS
T ss_pred EEeCCCceEEEEEEEEEEecC
Confidence 999998887788888888764
No 11
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=93.68 E-value=1.2 Score=31.36 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=60.8
Q ss_pred cEEEeEEEEe-----C-CCCCCCCcEEEEEEEEeCeEecccEEEEEEEE-CCEEeccCC-cCCCCCCCCC-CCCCeE-EE
Q 032005 33 AVTIQQVKII-----P-DPVVTGKPATFNISAVTGQAVYGGKVVINVAY-FGVPVHQET-RDVCEEVSCP-IAAGDF-VL 102 (149)
Q Consensus 33 ~~~i~~~~i~-----P-c~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~gi~v~~~~-~d~C~~~~CP-l~~G~~-~~ 102 (149)
.++|.++.+. | ..+..|+.+++++.+.+.+++....+-+.++- .|..+...+ ...-....=+ +++|++ ..
T Consensus 47 ~a~I~~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~~~~v 126 (188)
T 2r5o_A 47 GAKIIDYHIQSAGVDFPPSLTGNQQTDFLMKVVFEYDFDCVVPGILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRVF 126 (188)
T ss_dssp SEEEEEEEEEETTEESCSSEETTCEEEEEEEEEESSCEEEEEEEEEEEETTCCEEEEEEHHHHTTTCCCEEECTTCEEEE
T ss_pred cEEEEEEEEEECCCCEeeEEeCCCEEEEEEEEEECCcCCccEEEEEEECCCCCEEEecCcccccccccccccCCCCEEEE
Confidence 6688888774 2 24789999999999999999877765444433 354443221 1100011011 478984 66
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCC
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKN 127 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~ 127 (149)
.+.+.+ .+.+|+|.+.+.+.+.+
T Consensus 127 ~f~f~l--~L~~G~Y~lsv~i~~~~ 149 (188)
T 2r5o_A 127 KFSLPV--DLNSGDYLLSFGISAGN 149 (188)
T ss_dssp EEEEEC--CBCSEEEEEEEEEEEEE
T ss_pred EEEEec--ccCCCeEEEEEEEecCC
Confidence 666664 47889999999998765
No 12
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=93.48 E-value=1.1 Score=30.03 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=56.2
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCe-EEEEEEEEcCCC
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGD-FVLSHTQTLPSF 111 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~ 111 (149)
.+.+ +++ .|..+..|+.++++++..-..........|.+..+|..+-.. .-.|.+|+ .++++++. |
T Consensus 18 DL~V-~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~--------~v~La~G~s~tv~f~~~-~-- 84 (127)
T 3idu_A 18 DLTV-EIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNW--------TVSLGPKEEKVLTFNWT-P-- 84 (127)
T ss_dssp CEEE-EEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEE--------EEEECTTCEEEEEEEEC-C--
T ss_pred CeEE-Eec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeE--------EeccCCCCeEEEEEEEE-c--
Confidence 4455 554 688889999999999999888766667788888888544221 12588998 45555554 2
Q ss_pred CCCeeEEEEEEEE
Q 032005 112 TPPGSYTLKMTME 124 (149)
Q Consensus 112 ~P~g~~~v~~~l~ 124 (149)
...|.|++++..-
T Consensus 85 ~~~G~~~v~AvVD 97 (127)
T 3idu_A 85 TQEGMYRINATVD 97 (127)
T ss_dssp SSCEEEEEEEEES
T ss_pred CCCcEEEEEEEEc
Confidence 2379999999873
No 13
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}
Probab=92.72 E-value=0.37 Score=36.08 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCCeeEEEEEEEE-----cC-CCCE--EEEEEEEEEEc
Q 032005 103 SHTQTLPSFTPPGSYTLKMTME-----DK-NNEE--LTCFSFNFKIG 141 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~-----d~-~~~~--~~C~~~~v~i~ 141 (149)
++++.||+.+|+|+|-+|+|+. +. .|.+ +.|+++.|+=.
T Consensus 160 ~~~~tIP~~l~~G~YLlR~E~iALH~a~~~ggaQfY~~Caqi~VtG~ 206 (249)
T 2vtc_A 160 KWTVKIPSSLRPGNYVFRHELLAAHGASSANGMQNYPQCVNIAVTGS 206 (249)
T ss_dssp EEEEECCTTBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEESS
T ss_pred eeEEEcCCCCCCcceEEEEEeeeccccccCCCceechhhEEEEEccC
Confidence 5678999999999999999998 33 2455 68999888643
No 14
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=90.70 E-value=0.63 Score=30.01 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCCCCEE-EEEEEE
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKNNEEL-TCFSFN 137 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~~~~~-~C~~~~ 137 (149)
.+.+.++ .+++|.|+|+|+....||..+ .=+.|.
T Consensus 68 ~~~~~l~-~L~~G~YtV~WrvvS~DGH~~~G~~~Ft 102 (104)
T 1lyq_A 68 MVIIPRE-PLPAGTYRVDWRAVSSDTHPITGNYTFT 102 (104)
T ss_dssp EEEEESS-CCCSEEEEEEEEECCTTSCCEEEEEEEE
T ss_pred EEEEECC-CCCCceEEEEEEEEecCCCccCCEEEEE
Confidence 3445566 688999999999999998764 333343
No 15
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=90.06 E-value=0.8 Score=29.38 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCCCCEE-EEEEEE
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKNNEEL-TCFSFN 137 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~~~~~-~C~~~~ 137 (149)
.+.+.++ .+++|.|+|.|+....||..+ .=+.|.
T Consensus 66 ~~~~~l~-~L~~G~YtV~WrvvS~DGH~~~G~~~Ft 100 (102)
T 2c9r_A 66 MVITPAS-PLTAGTYKVDWRAVSSDTFPITGSVTFK 100 (102)
T ss_dssp EEEEESS-CCCSEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred EEEEECC-CCCCceEEEEEEEEecCCCccCCEEEEE
Confidence 3444555 788999999999999998764 333343
No 16
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*
Probab=89.41 E-value=1.3 Score=32.24 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCeeEEEEEEEEcC------CCCE--EEEEEEEEEE
Q 032005 102 LSHTQTLPSFTPPGSYTLKMTMEDK------NNEE--LTCFSFNFKI 140 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~~~v~~~l~d~------~~~~--~~C~~~~v~i 140 (149)
.++++.||+.+|+|+|-+|.|+..= .+.+ +.|+++.|+=
T Consensus 117 ~~~~~~iP~~l~~G~YllR~E~ialh~a~~~~~~qfY~~Caqi~Vtg 163 (208)
T 3eja_A 117 SSFAVPIPPCIKSGYYLLRAEQIGLHVAQSVGGAQFYISCAQLSVTG 163 (208)
T ss_dssp CEEEEECCSSBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEES
T ss_pred CceEEeccCCCCCcceEEEeeeeeecccccCCCCcccccceEEEEeC
Confidence 3567899999999999999888752 2345 6899998873
No 17
>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa}
Probab=88.83 E-value=1.7 Score=31.98 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcC------CCCE--EEEEEEEEEE
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDK------NNEE--LTCFSFNFKI 140 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~------~~~~--~~C~~~~v~i 140 (149)
++++.||+.+|+|+|-+|.|+..= .+.+ +.|+++.|+=
T Consensus 133 ~~~~~iP~~l~~G~YllR~E~Ialh~a~~~g~~qfY~~Caqi~VtG 178 (223)
T 4eir_A 133 RHSIKIPECIAPGQYLLRAEMIALHAASNYPGAQFYMECAQLNVVG 178 (223)
T ss_dssp EEEEECCTTSCCEEEEEEEEEEECTTCSSSSCCEEEEEEEEEEEES
T ss_pred eEEEECCCCCCCCceEEEEeeeeccccccCCCCcccccceEEEEeC
Confidence 467899999999999999888752 2345 6899998863
No 18
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=87.45 E-value=3.9 Score=27.32 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEcc
Q 032005 95 IAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGF 142 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~~ 142 (149)
|+||+ |+|+.-..++ .|.|.....+.+.+++|+.+-+---+|.+..
T Consensus 76 L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~ 122 (127)
T 2f1e_A 76 LRPGEAFHYTSGVLLE--TEQGQMQGHYDMVADDGTEFIAPIAAFVLSV 122 (127)
T ss_dssp ECTTCEEEEEEEEEES--SSCEEEEEEEEEEETTCCEEEEEEEEEEEC-
T ss_pred CCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCEEEEECCceEcCC
Confidence 57898 7777766665 5789999999999998987655554555544
No 19
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=87.44 E-value=3.3 Score=28.13 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=35.9
Q ss_pred CCC-CCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEccc
Q 032005 92 SCP-IAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 92 ~CP-l~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~~~ 143 (149)
..| |+||+ |+|+.-..++ .|.|.....+.+.+++|+.+-+---+|.+...
T Consensus 76 eqPvL~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~P 127 (139)
T 1xq4_A 76 QQPLLAPGETFEYTSGCPLP--TPIGTMRGTYHCVGENGIPFEVPIAEFLLAMP 127 (139)
T ss_dssp CCCEECTTCEEEEEEEEEES--SSEEEEEEEEEEEETTSCEEEEEEEEEEEECT
T ss_pred CCCcCCCCCceEEcCCcCcC--CCceEEEEEEEEEeCCCCEEEEECCCeEcCCC
Confidence 344 58898 7777666665 57899999999999999876655555555543
No 20
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=87.06 E-value=3.8 Score=27.32 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEcc
Q 032005 95 IAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGF 142 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~~ 142 (149)
|+||+ |+|+.-..++ .|.|.....+.+.+++|+.+-+---+|.+..
T Consensus 75 L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~ 121 (126)
T 1xvs_A 75 IKANDEYTYSSGTALD--TPVGVMQGQYLMIDEQGESFTVEIEPFRLAV 121 (126)
T ss_dssp ECTTCEEEEEEEEEES--SSEEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCEEEEECCceEcCC
Confidence 57898 7777666665 5789999999999999986655544555544
No 21
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=86.59 E-value=4.3 Score=27.38 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=33.8
Q ss_pred CCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEcc
Q 032005 95 IAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGF 142 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~~ 142 (149)
|+||+ |+|+.-..++ .|.|.....+.+.+++|+.+-+---+|.+..
T Consensus 75 L~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~ 121 (134)
T 1tza_A 75 IPPNTAYQYTSGTVLD--TPFGIMYGTYGMVSESGEHFNAIIKPFRLAT 121 (134)
T ss_dssp ECTTEEEEEEEEEEES--SSEEEEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred CCCCCceEEcCCcCcC--CCceEEEEEEEEEECCCCEEEEECCCeEccC
Confidence 58898 6776666665 5789999999999999987655554555544
No 22
>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels, CBM33, copper monooxygenase, peroxide, superoxide, CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A {Neurospora crassa} PDB: 4eis_B*
Probab=86.41 E-value=2.5 Score=31.07 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCC------CCE--EEEEEEEEE
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKN------NEE--LTCFSFNFK 139 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~------~~~--~~C~~~~v~ 139 (149)
++++.||+.+|+|+|-+|.|+..=+ |.+ +.|+++.|+
T Consensus 136 ~~~~~IP~~l~~G~YllR~E~IALH~a~~~ggaQfY~~Caqi~Vt 180 (225)
T 4eis_A 136 NYEYAIPSCLKPGYYLVRHEIIALHSAYSYPGAQFYPGCHQLQVT 180 (225)
T ss_dssp EEEEECCTTBCSEEEEEEEEEEECTTCSSSSCCEEEEEEEEEEEE
T ss_pred ceeEeccCCCCCcceEEEEeeccccccccCCCCcccccCeEEEEe
Confidence 5678999999999999998887432 345 689999887
No 23
>3zud_A GH61 isozyme A; hydrolase, degradation of recalcitrant biomass; HET: HIC NAG TAM; 1.25A {Thermoascus aurantiacus} PDB: 2yet_A*
Probab=83.92 E-value=3.2 Score=30.55 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCC------CCE--EEEEEEEEE
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKN------NEE--LTCFSFNFK 139 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~------~~~--~~C~~~~v~ 139 (149)
++++.||+.+|+|+|-+|.|+..=+ +.+ +.|+++.|+
T Consensus 140 ~~~~~IP~~l~~G~YllR~E~IALH~a~~~ggaQfY~~Caqi~Vt 184 (228)
T 3zud_A 140 SWTVTIPTTIAPGNYVLRHEIIALHSAQNQDGAQNYPQCINLQVT 184 (228)
T ss_dssp EEEEECCSSBCCEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEC
T ss_pred ccceeccCCCCCCceEEEeeeccccccccCCCCcccccceEEEEe
Confidence 5778999999999999998877532 345 689998876
No 24
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=82.95 E-value=2.6 Score=34.56 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=11.9
Q ss_pred CCCCCCCCe-EEEEEE
Q 032005 91 VSCPIAAGD-FVLSHT 105 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~ 105 (149)
..||+.||+ ++|.++
T Consensus 104 tq~~I~PG~s~~Y~f~ 119 (521)
T 1v10_A 104 NQCPIIPNESFVYDFV 119 (521)
T ss_dssp TBCCBCTTEEEEEEEE
T ss_pred eeCCcCCCCeEEEEEe
Confidence 579999998 666655
No 25
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=82.94 E-value=7.6 Score=25.29 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=54.0
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCeE-EEEEEEEcCCC
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDF-VLSHTQTLPSF 111 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~-~~~~~~~ip~~ 111 (149)
.+.++++ +|-.+..|+.++|++..+-......+...|.++.+|..+-...- =-|.+|.. +..+++. ..
T Consensus 4 DL~vt~i--tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v-------~~LaaG~s~tv~~~w~--~~ 72 (114)
T 2l0d_A 4 DLVPVSL--TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTV-------TSLESENSTNVDFHWT--LD 72 (114)
T ss_dssp CEEEEEE--ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEE-------SCBCBTCEEEEEEEEE--CC
T ss_pred CcEEEec--cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceec-------ccccCCCEEEEEEEEe--ec
Confidence 3566766 57668899999999999988877777788888888865432211 01677873 4444322 11
Q ss_pred CCCeeEEEEEEE
Q 032005 112 TPPGSYTLKMTM 123 (149)
Q Consensus 112 ~P~g~~~v~~~l 123 (149)
-..|.|++++..
T Consensus 73 ~~~G~ytl~a~V 84 (114)
T 2l0d_A 73 GTANSYTLTVNV 84 (114)
T ss_dssp CSCSEEEEEEEE
T ss_pred CcCceEEEEEEE
Confidence 136999999887
No 26
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=80.06 E-value=2.3 Score=28.24 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=53.8
Q ss_pred EEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCC-CCCCCCCCCe-EEEEEEEEcCCCCCC--
Q 032005 39 VKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCE-EVSCPIAAGD-FVLSHTQTLPSFTPP-- 114 (149)
Q Consensus 39 ~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~-~~~CPl~~G~-~~~~~~~~ip~~~P~-- 114 (149)
++.+|-.+..|+.+++++.........+....|.+++++ |......=+ ..-=+|.+|. .+.++++.++.. +.
T Consensus 5 is~sP~~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~---p~~gg~~vgt~tv~~LaaG~s~t~~v~~~~~~~-~~~~ 80 (122)
T 2kut_A 5 ITLSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGN---PAQGGVEIGRDTISRIPVGGTGLARVQWKATRK-LAGR 80 (122)
T ss_dssp EECCTTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSC---TTTCCCCCBCCCCSCBCTTCEEECCEEEECCCC-CSSC
T ss_pred eecCCCCCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCC---CccCCeEEeeEEccccCCCCeEEEEEEEecCCc-cccc
Confidence 567888889999999999888777665665666666665 110000000 0123689998 465677777633 33
Q ss_pred ---eeEEEEEEEE
Q 032005 115 ---GSYTLKMTME 124 (149)
Q Consensus 115 ---g~~~v~~~l~ 124 (149)
|.|+++...-
T Consensus 81 a~~Gsy~v~AvVD 93 (122)
T 2kut_A 81 AANPGVPVYAVVD 93 (122)
T ss_dssp CSCCCCCCCEEEC
T ss_pred ccCceEEEEEEEc
Confidence 9999998883
No 27
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=77.62 E-value=13 Score=24.53 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=46.9
Q ss_pred CCCcEEEEEEEEeCe------Eeccc-EEEEEEEE-CCEEeccCCcCCCCC---CCCCCCCCe-EEEEEEEEcCCCCCCe
Q 032005 48 TGKPATFNISAVTGQ------AVYGG-KVVINVAY-FGVPVHQETRDVCEE---VSCPIAAGD-FVLSHTQTLPSFTPPG 115 (149)
Q Consensus 48 ~G~~~~i~~~~~~~~------~i~~~-~~~v~~~~-~gi~v~~~~~d~C~~---~~CPl~~G~-~~~~~~~~ip~~~P~g 115 (149)
.|..+.+++..+.+. ...++ ..++.+.- .|-.+..-+.+-|-- ..=-++||+ .+|..++. ...++|
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~--~~~~pG 93 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK--EVPEPG 93 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEES--SCCCSE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeC--CCCCCc
Confidence 667777777766444 23344 34665543 454554335555631 112378998 56655555 567789
Q ss_pred eEEEEEEEEcC
Q 032005 116 SYTLKMTMEDK 126 (149)
Q Consensus 116 ~~~v~~~l~d~ 126 (149)
.|+++.++..+
T Consensus 94 ~Ytl~a~l~~~ 104 (120)
T 3isy_A 94 TYEVKVTFKGR 104 (120)
T ss_dssp EEEEEEEECCE
T ss_pred cEEEEEEEEee
Confidence 99999999864
No 28
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=77.36 E-value=2.8 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCe-EEEEEEEEcCCCCCCeeEEEEEEE
Q 032005 86 DVCEEVSCPIAAGD-FVLSHTQTLPSFTPPGSYTLKMTM 123 (149)
Q Consensus 86 d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~~~v~~~l 123 (149)
+.|...+|++..|+ ++.+..+.-+...-.++..+.+.+
T Consensus 21 ~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~ 59 (130)
T 1nep_A 21 SPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIV 59 (130)
T ss_dssp ESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEE
T ss_pred CCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEE
Confidence 45878899999999 788888776666666777776655
No 29
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=77.35 E-value=3.1 Score=27.56 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCC-CCCCCCCCCCe-EEEEEEEEcCCCCCCeeEEEEEEE
Q 032005 86 DVC-EEVSCPIAAGD-FVLSHTQTLPSFTPPGSYTLKMTM 123 (149)
Q Consensus 86 d~C-~~~~CPl~~G~-~~~~~~~~ip~~~P~g~~~v~~~l 123 (149)
+.| ...+|++..|+ ++.+..+.-+...-.++..+.+.+
T Consensus 19 ~~C~~~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~ 58 (129)
T 1xwv_A 19 DGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASL 58 (129)
T ss_dssp TTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEE
T ss_pred CCCCCCCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEE
Confidence 558 78899999999 788888776666667777777766
No 30
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=71.34 E-value=2.8 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=20.6
Q ss_pred CCCCeEEEEEEEE--cCCCCCCeeEEEEEEEEcCCCCE
Q 032005 95 IAAGDFVLSHTQT--LPSFTPPGSYTLKMTMEDKNNEE 130 (149)
Q Consensus 95 l~~G~~~~~~~~~--ip~~~P~g~~~v~~~l~d~~~~~ 130 (149)
.++|.+.|...-. --..+|+|.|+++++..|.+|+.
T Consensus 61 ~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~d~~g~~ 98 (138)
T 3c12_A 61 SAAGEVSFAWDGTDANGNRMAAGKYGITATQTDTAGAK 98 (138)
T ss_dssp SSSEEEEEEECSBCTTSCBCCSEEEEEEEEEEETTCCE
T ss_pred cCCceEEEEECCcCCCCCCCCCceEEEEEEEEECCCCE
Confidence 5566643333222 11336778888888887666654
No 31
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*
Probab=64.29 E-value=9 Score=26.65 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=26.1
Q ss_pred CCCCCCCcEEEEEEEEeCe-EecccEEEEEE
Q 032005 44 DPVVTGKPATFNISAVTGQ-AVYGGKVVINV 73 (149)
Q Consensus 44 c~~~~G~~~~i~~~~~~~~-~i~~~~~~v~~ 73 (149)
||.++|+.+..+..++.++ .+..|+..+.+
T Consensus 112 Cp~~KGE~v~~~~~v~~p~~e~P~G~Y~v~a 142 (162)
T 3m7o_A 112 CGRRKGEQIYYAGPVNNPGLDVPQGEYQLLL 142 (162)
T ss_dssp TTCCTTCEEEEEEECCCCEEECCSEEEEEEE
T ss_pred CCcCCCeEEEEEEEeecCceecCCCcEEEEE
Confidence 9999999999999999999 69999765443
No 32
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=59.53 E-value=26 Score=21.94 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEEcCCCCCCeeEEEEEEEEc
Q 032005 46 VVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMED 125 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~~~v~~~l~d 125 (149)
+..|..++|.+..... .....+|+...+|..+-.. . .-.|+|..+-. .|.|+++.+.+|
T Consensus 13 v~~g~~v~i~a~A~D~---dg~V~kVef~vdg~~vg~d-------t-----~apy~~~w~~~------~G~htl~a~AtD 71 (98)
T 3pe9_A 13 AYGNEFLKITATASDS---DGKISRVDFLVDGEVIGSD-------R-----EAPYEYEWKAV------EGNHEISVIAYD 71 (98)
T ss_dssp EETTSEEEEEEEECCS---SSCEEEEEEEETTEEEEEE-------C-----SSSEEEEEECC------SEEEEEEEEEEE
T ss_pred EcCCCEEEEEEEEEeC---CCCEEEEEEEECCEEeccc-------c-----cCCEEEEEEcC------CccEEEEEEEEE
Confidence 3445544444444322 1224578888888554211 0 12255444322 599999999999
Q ss_pred CCCCEEEEEEEEEEEcccc
Q 032005 126 KNNEELTCFSFNFKIGFHS 144 (149)
Q Consensus 126 ~~~~~~~C~~~~v~i~~~~ 144 (149)
..|....=..+.+++...+
T Consensus 72 ~~G~~~tS~~v~vtV~~~~ 90 (98)
T 3pe9_A 72 DDDAASTPDSVKIFVKQAR 90 (98)
T ss_dssp TTCCBCCCEEEEEEEECCC
T ss_pred CCCCEEeeeEEEEEECchh
Confidence 9997655555666655543
No 33
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=59.22 E-value=23 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCeeEEEEEEE
Q 032005 102 LSHTQTLPSFTPPGSYTLKMTM 123 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~~~v~~~l 123 (149)
+..++.+|+..+.|.|++++..
T Consensus 63 ~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 63 KQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp EEEEEECCSSCCCEEEEEEEEC
T ss_pred EEEEEECCCCCCCeeEEEEEEE
Confidence 5678899999999999998875
No 34
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=50.45 E-value=43 Score=22.18 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCCCCCCe-EEEEEEEE--cCCC-CC-CeeEEEEEEEEcCCCCEEEEEEEEEEEccc
Q 032005 92 SCPIAAGD-FVLSHTQT--LPSF-TP-PGSYTLKMTMEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~--ip~~-~P-~g~~~v~~~l~d~~~~~~~C~~~~v~i~~~ 143 (149)
.=|+.+|+ .+....+. -++. -| .+...++.+..|++|+.++=.+..+-+.+.
T Consensus 89 ~~PV~~GD~L~~~~~v~~~~~~~s~~~~~~v~~~~~~~nq~Ge~V~~~~~~~~~~~r 145 (154)
T 3exz_A 89 PNPTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVVQRSTAKVVVFRR 145 (154)
T ss_dssp SSCCCTTCEEEEEEEEEEEEECSSCTTEEEEEEEEEEECTTSCEEEEEEEEEEEECC
T ss_pred cCCCCCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEEEEEEEEEEEEcc
Confidence 35788887 34333332 1211 12 244567777888888776555555555443
No 35
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=50.15 E-value=39 Score=20.20 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCeeEEEEEEEEcCCC
Q 032005 103 SHTQTLPSFTPPGSYTLKMTMEDKNN 128 (149)
Q Consensus 103 ~~~~~ip~~~P~g~~~v~~~l~d~~~ 128 (149)
...+.....+|+|+|.+-+...-.||
T Consensus 39 ~~~Fyaeev~paG~Ye~d~~~~V~dg 64 (78)
T 1pfs_A 39 QCQFFVESVIPAGSYQVPYRINVNNG 64 (78)
T ss_dssp EEEEECSSCCCSEEEEEEEEEEEETT
T ss_pred eEeeeeccCCCCCceecceEeeecCC
Confidence 44445557788898887777665555
No 36
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=50.01 E-value=52 Score=23.14 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=50.6
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCCCCCeEEEEEEEE
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAGDFVLSHTQT 107 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~~G~~~~~~~~~ 107 (149)
.++|+++.+...|-.-..++.++++|..-.+++.. +++++.|-|. ...+--|+ .-=|+..|.+.|.+...
T Consensus 5 ~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~d-leWkliYVgS----a~s~~~DQ~Ldsv~VGPi~~G~~kFv~~ad 79 (179)
T 2idc_A 5 IVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHD-LEWKLTYVGS----SRSLDHDQELDSILVGPVPVGVNKFVFSAD 79 (179)
T ss_dssp SEEEEEEEEESCSEETTSCEEEEEEEEECSCCSSC-EEEEEEECSC----TTCGGGCEEEEEEEECSCCSEEEEEEEEEC
T ss_pred EEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCC-cEEEEEEEcC----CCcccCCeEeeEEEECCccceeEEEEEEcC
Confidence 68999999998888889999999999999987544 6666666541 11111121 23589999876666655
Q ss_pred cC
Q 032005 108 LP 109 (149)
Q Consensus 108 ip 109 (149)
=|
T Consensus 80 pP 81 (179)
T 2idc_A 80 PP 81 (179)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 37
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*
Probab=48.74 E-value=31 Score=23.60 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEEEEeCe-EecccEEEE--EEEEC
Q 032005 44 DPVVTGKPATFNISAVTGQ-AVYGGKVVI--NVAYF 76 (149)
Q Consensus 44 c~~~~G~~~~i~~~~~~~~-~i~~~~~~v--~~~~~ 76 (149)
|+..+|+.++.+..++.+. .+..|+..+ ++..+
T Consensus 91 C~~~KGE~i~~~~~v~~pg~~~p~G~Y~vvaea~~~ 126 (151)
T 3mtx_A 91 CGKKKGEHLYYEGPITLGIKEIPQRDYTITARLTNE 126 (151)
T ss_dssp TTCCTTCEEEEEEEEECCCSSCCCEEEEEEEEEEET
T ss_pred cCccCCeeEEEEEEeecCceecCCCcEEEEEEEEcC
Confidence 9999999999999999998 898997644 44443
No 38
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=48.69 E-value=18 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=20.6
Q ss_pred CCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEcccccc
Q 032005 109 PSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLV 146 (149)
Q Consensus 109 p~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~~~~~~ 146 (149)
|+-||.+.+++++.+.|..+.. ..+.+.+..+.+|
T Consensus 15 ~~~~~~~~i~l~v~v~d~~s~~---~~i~l~V~ps~TV 49 (105)
T 4dbg_A 15 PEVSPTQDIRLWVSVEDAQMHT---VTIWLTVRPDMTV 49 (105)
T ss_dssp -----CCCEEEEEEEEESSSCC---EEEEEEECTTCBH
T ss_pred CCcCCCCcEEEEEEEEccCCCC---ceEEEEECCcChH
Confidence 5779999999999999987633 3344444455544
No 39
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=46.08 E-value=94 Score=26.33 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCCCCCcEEEEEEEEeCe-EecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCe-EEE-EEEEEcCCC--CCCeeEEE
Q 032005 45 PVVTGKPATFNISAVTGQ-AVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGD-FVL-SHTQTLPSF--TPPGSYTL 119 (149)
Q Consensus 45 ~~~~G~~~~i~~~~~~~~-~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~-~~~-~~~~~ip~~--~P~g~~~v 119 (149)
-=..|+.+++++++.... ...++++.+.++..+..|-...... . |.+|+ ++. ..++.+|+. -.-.-|-+
T Consensus 17 ~Y~PGe~V~l~~~l~n~t~~~~~gtv~~~v~hl~~~V~~~~~~~--~----l~~G~s~~~~~~~~~~P~~df~n~~GYlv 90 (643)
T 3vmn_A 17 VYQAGEAVHLNLTLNNTTSLAQNITATAEVYSLENKLKTLQYTK--Y----LLPNESYTTQKGEFVIPANSLANNRGYLL 90 (643)
T ss_dssp SBCTTSCEEEECEEECCSSSCEEEEEEEEEEETTEEEEEEEEEE--E----ECTTCEEECCTTSEEECTTSSCSSEEEEE
T ss_pred ccCCCCeEEEEEEEecccCccceeEEEEEEEecccccccceEEE--E----ecCCCcceeeeeeeecCccccccCceEEE
Confidence 346799999999988654 3446778888888776554321101 1 45665 333 124456632 23345899
Q ss_pred EEEEEcCCCCEEEEEEEEEEEccc
Q 032005 120 KMTMEDKNNEELTCFSFNFKIGFH 143 (149)
Q Consensus 120 ~~~l~d~~~~~~~C~~~~v~i~~~ 143 (149)
++...|++|+.+.=...-+.+.++
T Consensus 91 ev~~~d~~g~~~~~~t~AIDVSSd 114 (643)
T 3vmn_A 91 KVNISDSQNNILEQGNRAIAVEDD 114 (643)
T ss_dssp EEEEECTTCCEEEEEEEEEEECSS
T ss_pred EEEEEcCCCcEeeeeeEEEEecCC
Confidence 999999888887777777776653
No 40
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=45.78 E-value=73 Score=22.12 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=45.2
Q ss_pred CCCcEEEEEEEEeCeEeccc-EEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEEcCCCCCCeeEEEEEEEEcC
Q 032005 48 TGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDK 126 (149)
Q Consensus 48 ~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~~~v~~~l~d~ 126 (149)
.|..+++++....+ .+ ...+++..+|..+-.. ..+.|+|+... +.|.|+++++.+|.
T Consensus 107 ~~~~vtl~~~AsD~----~g~V~~Ve~~~dg~~v~t~------------t~~~y~~~~~~------~~G~~tl~a~A~D~ 164 (190)
T 3pdd_A 107 GNEFLKITATASDS----DGKISRVDFLVDGEVIGSD------------REAPYEYEWKA------VEGNHEISVIAYDD 164 (190)
T ss_dssp TTSEEEEEEEEECS----SSCEEEEEEEETTEEEEEE------------CSSSEEEEEEC------CSEEEEEEEEEEET
T ss_pred cCCeEEEEEEEECC----CCcEEEEEEEECCEEEecc------------cCCCEEEEEec------CCeeEEEEEEEEEC
Confidence 45555555544322 23 3467777777544221 12336555543 78999999999999
Q ss_pred CCCEEEEEEEEEEEccccc
Q 032005 127 NNEELTCFSFNFKIGFHSL 145 (149)
Q Consensus 127 ~~~~~~C~~~~v~i~~~~~ 145 (149)
.|..-.=..+.+++..++.
T Consensus 165 aGn~s~s~~vtvtv~~~~~ 183 (190)
T 3pdd_A 165 DDAASTPDSVKIFVKQARL 183 (190)
T ss_dssp TCCBCCCEEEEEEEBCGGG
T ss_pred CCCEEecceEEEEECCccc
Confidence 8866444556666665443
No 41
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=44.21 E-value=19 Score=29.21 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=12.1
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ ++|.++.
T Consensus 121 pq~~I~PG~s~~Y~f~~ 137 (481)
T 3zx1_A 121 PHDPILAGEERIYRFEI 137 (481)
T ss_dssp TTSCBCTTCEEEEEEEC
T ss_pred ccCcCCCCCeEEEEEeC
Confidence 579999998 5665554
No 42
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc, PS biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Probab=44.05 E-value=71 Score=21.81 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=28.1
Q ss_pred CCCCCCCe-EEEEEEEE--cCC-CCCC-eeEEEEEEEEcCCCCEEEEEEEEEEEcc
Q 032005 92 SCPIAAGD-FVLSHTQT--LPS-FTPP-GSYTLKMTMEDKNNEELTCFSFNFKIGF 142 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~--ip~-~~P~-g~~~v~~~l~d~~~~~~~C~~~~v~i~~ 142 (149)
.=|+.+|+ .+....+. -+. .=|. +.+.++.+.+|++|+.++=.+..+.+.+
T Consensus 114 ~~PV~~GDtL~~~~~v~~~~~~~s~~~~g~v~~~~~~~nq~Ge~V~~g~~~v~v~~ 169 (176)
T 4ffu_A 114 VRPVHIGDTIRTRVTIAAKEDDPKRPGAGRVVERCEVINQRGEVVLAADHILIVER 169 (176)
T ss_dssp CSCCCTTCEEEEEEEEEEEEECTTCTTEEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred cCCccCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEEEEEEEEEEEec
Confidence 34677887 34443332 121 1121 3457777788888877655555555544
No 43
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=43.85 E-value=42 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=32.1
Q ss_pred ccEEEeEEEEeCCC--CCCCCcEEEEEEEEeCeEecccE-EEEEE
Q 032005 32 YAVTIQQVKIIPDP--VVTGKPATFNISAVTGQAVYGGK-VVINV 73 (149)
Q Consensus 32 ~~~~i~~~~i~Pc~--~~~G~~~~i~~~~~~~~~i~~~~-~~v~~ 73 (149)
..+++++.+++.-. +..|+.+.+++.|..+..+..|. .++.+
T Consensus 38 ~kvt~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~vk~GD~fti~l 82 (363)
T 4f27_A 38 DKVTASDFKLEKTAFDPNQSGNTFMAANFKVTGQVKSGDYFTAKL 82 (363)
T ss_dssp GGEEEEEEEESCSEECTTBTCCEEEEEEEEESSCCCTTCEEEEEC
T ss_pred eeEEEEecccccccccCCCCceEEEEEEEEcCCCCCCCCEEEEEc
Confidence 46888888776543 56899999999999998888884 45543
No 44
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=43.61 E-value=81 Score=22.08 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=50.0
Q ss_pred ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCCCCCeEEEEEEE
Q 032005 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAGDFVLSHTQ 106 (149)
Q Consensus 32 ~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~~G~~~~~~~~ 106 (149)
..++|+++.+...|-.-..++.++++|..-.+++.. +++++.|-|. ....--+. .-=|+..|.+.|.+..
T Consensus 8 s~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~d-leWkliYVgS----a~s~~~DQ~Ld~v~VGPi~~G~~kFv~~a 82 (175)
T 2hue_A 8 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHD-LEWKLTYVGS----SRSLDHDQELDSILVGPVPVGVNKFVFSA 82 (175)
T ss_dssp CSEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSC-EEEEEEEESC----TTCGGGEEEEEEEEECSCCSEEEEEEEEE
T ss_pred CEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCC-cEEEEEEEcC----CCCccCCeEeeEEEECCccceeEEEEEEc
Confidence 478999999998888889999999999999987544 6666555431 11111111 2357889987666665
Q ss_pred EcC
Q 032005 107 TLP 109 (149)
Q Consensus 107 ~ip 109 (149)
.=|
T Consensus 83 dpP 85 (175)
T 2hue_A 83 DPP 85 (175)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 45
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Probab=43.40 E-value=43 Score=26.15 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=53.7
Q ss_pred CCCCcEEEEEEEEeCeEecccEEEEEEEEC--CEEeccC--C-------------cCCCCC----------------CCC
Q 032005 47 VTGKPATFNISAVTGQAVYGGKVVINVAYF--GVPVHQE--T-------------RDVCEE----------------VSC 93 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~--gi~v~~~--~-------------~d~C~~----------------~~C 93 (149)
.|||...+++..+++..-+..+..++..++ |+.+-.. + .--|++ ..-
T Consensus 174 VraQgmD~tvpislpt~p~~s~Fsi~~Em~gngid~~C~~E~~~iSpvlPG~N~F~ItCsGdkphfaSgGiLTp~SP~~t 253 (470)
T 2h6o_A 174 VRAQGLDVTLPLSLPTSAQDSNFSVKTEMLGNEIDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTSPVAT 253 (470)
T ss_dssp ESSSCEEEEEEEECSSCSSSCCBEEECCBCCTTCCCCCBBSSCCBSSCCSSCEEEEBCCSBSCCSSCCEEEEEECSCSSC
T ss_pred EEecceeEEEecccCCCcccCceEEEEeeccCccceEEecCCCccccccCCCceeEEEecCCCCCCccccccccCCcccc
Confidence 688999999988888866666655555544 3432110 0 123542 134
Q ss_pred CCCCCeEEEEEEEE---cCCCCCCeeEEEEEEEEcC-----CCCEEEEEEEEEEEcc
Q 032005 94 PIAAGDFVLSHTQT---LPSFTPPGSYTLKMTMEDK-----NNEELTCFSFNFKIGF 142 (149)
Q Consensus 94 Pl~~G~~~~~~~~~---ip~~~P~g~~~v~~~l~d~-----~~~~~~C~~~~v~i~~ 142 (149)
|+..+.|.|+..+. +|.++ |+-..-+.++.. +|.. .|++.++...+
T Consensus 254 p~p~tgY~YsL~l~PRPVprfL--Gn~s~ly~~Y~~~gp~~~ggd-~Ci~~~i~Fsd 307 (470)
T 2h6o_A 254 PIPGTGYAYSLRLTPRPVSRFL--GNNSILYVFYSGNGPKASGGD-YCIQSNIVFSD 307 (470)
T ss_dssp CCSSCCCEEEEEEECCCCCGGG--CSSEEEEEEEESCSSCCTTCS-CEEEEEEEECC
T ss_pred CCCCcceEEEEEecCcccchhh--CCCceEEEEEecCCCccCCCc-eEEeccceecc
Confidence 55556688877764 55555 333333334433 2333 59999988766
No 46
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=43.19 E-value=72 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.6
Q ss_pred EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCE
Q 032005 100 FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEE 130 (149)
Q Consensus 100 ~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~ 130 (149)
|+.+..+.|- +|.|+|++.+.++...++.
T Consensus 59 ~~~~~~Qtvt--lp~gtYtlsa~v~~~~~~~ 87 (152)
T 2xom_A 59 FSFELSQEVE--LPAGVYRVGFWTHGEKGVK 87 (152)
T ss_dssp EEEEEEEEEE--CCSEEEEEEEEEEESTTCE
T ss_pred CeeEEEEEEE--eCCCeEEEEEEEEcCCCce
Confidence 6667777773 8999999999998776655
No 47
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=42.38 E-value=17 Score=27.54 Aligned_cols=55 Identities=11% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCe-EEEEEEEEcC
Q 032005 47 VTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGD-FVLSHTQTLP 109 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip 109 (149)
..|+.+.|++.=.+++.. .+.+-|+.++.. .|.=....||+.||+ ++|.++...|
T Consensus 47 ~~Gd~v~v~~~N~l~~~~-------siH~HG~~~~~~-~dG~~~~~~~i~PG~~~~Y~~~~~~P 102 (313)
T 3tas_A 47 NEGDTLHIEFENTMDVPV-------SLHVHGLDYEIS-SDGTKQSRSDVEPGGTRTYTWRTHVP 102 (313)
T ss_dssp ETTCEEEEEEEECSSSCB-------CCEESSSBCCGG-GSCSTTTTCCBCTTCEEEEEEBCCCC
T ss_pred ECCCEEEEEEEECCCCCc-------cEeecCCcCCcc-CCCCccccCCcCCCCEEEEEEEeccC
Confidence 456666666654443321 233445444322 222123679999998 7888776665
No 48
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=39.71 E-value=19 Score=27.10 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=13.0
Q ss_pred CCCCCCCCe-EEEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQT 107 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~~ 107 (149)
..||++||+ ++|.++..
T Consensus 99 ~~~~i~PG~t~~Y~~~~~ 116 (299)
T 3t9w_A 99 NGSAVMPGQTRRYTWRSH 116 (299)
T ss_dssp TTCCBCTTCEEEEEEBCC
T ss_pred ccCccCCCCeEEEEEEee
Confidence 579999998 67766554
No 49
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=39.48 E-value=82 Score=21.08 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCC
Q 032005 95 IAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNE 129 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~ 129 (149)
+++|+ |+++.-+.+..--.+..+.+.++..|.+|+
T Consensus 65 l~~g~~Y~~Sa~V~~~~g~~~~~v~~~l~~~~~~g~ 100 (160)
T 1dyo_A 65 FVPGNTYCFSVVASFIEGASSTTFCMKLQYVDGSGT 100 (160)
T ss_dssp SCTTCEEEEEEEEECCSSSSCEEEEEEEEEECTTSC
T ss_pred ccCCCEEEEEEEEEECCCCCceeEEEEEEEEcCCCC
Confidence 78898 777777776443333456666666576665
No 50
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=39.32 E-value=26 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=14.1
Q ss_pred eeEEEEEEEEcCCCCEE
Q 032005 115 GSYTLKMTMEDKNNEEL 131 (149)
Q Consensus 115 g~~~v~~~l~d~~~~~~ 131 (149)
..|++.|-+.|++|.+-
T Consensus 8 dsy~~t~ll~dddg~q~ 24 (56)
T 2le2_A 8 DSYDVTMLLQDDDGKQY 24 (56)
T ss_dssp SSEEEEEEEECTTSCEE
T ss_pred cceeEEEEEEcCCCcee
Confidence 46999999999998654
No 51
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=38.69 E-value=32 Score=28.60 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=12.5
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ |+|.++.
T Consensus 143 Tq~pI~PG~sftY~f~~ 159 (580)
T 3sqr_A 143 TQCPIAPGDTLTYKFQV 159 (580)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCCeEEEEEEC
Confidence 469999998 6776654
No 52
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=38.07 E-value=30 Score=22.90 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=10.1
Q ss_pred CCCCeeEEEEEEEEc
Q 032005 111 FTPPGSYTLKMTMED 125 (149)
Q Consensus 111 ~~P~g~~~v~~~l~d 125 (149)
..|+|.|+++++..+
T Consensus 77 ~~~~G~Y~~~v~a~~ 91 (138)
T 3osv_A 77 IMPPGTYKFEAQTSI 91 (138)
T ss_dssp BCCSEEEEEEEEEEE
T ss_pred CCCCccEEEEEEEEc
Confidence 466777777776664
No 53
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=37.42 E-value=84 Score=20.65 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCCCCCe-EEEEEEEE-cCC-CCCCeeEEEEEEEEcCCCCEEEEEEEEEEE
Q 032005 93 CPIAAGD-FVLSHTQT-LPS-FTPPGSYTLKMTMEDKNNEELTCFSFNFKI 140 (149)
Q Consensus 93 CPl~~G~-~~~~~~~~-ip~-~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i 140 (149)
=|+.+|+ .+....+. +-. .-..+.+.++.+..|++|+.++=.+..+.+
T Consensus 105 ~PV~~Gd~l~~~~~v~~~~~~~~~~~~v~~~~~~~n~~g~~v~~~~~~~~~ 155 (161)
T 1q6w_A 105 RPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVLTALYSALI 155 (161)
T ss_dssp SCCBTTCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEEEEEecCCCceEEEEEEEEEeCCCCEEEEEEEEEEE
Confidence 3567776 33333331 100 001345667777788877665434444433
No 54
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=36.73 E-value=36 Score=25.90 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.3
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ |+|.++.
T Consensus 79 tq~~I~PG~~~~y~f~~ 95 (339)
T 2zwn_A 79 TQQPIEAGDSYTYKFKA 95 (339)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred ccCccCCCCeEEEEEEC
Confidence 469999998 6776654
No 55
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=36.55 E-value=34 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=12.6
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ ++|.++.
T Consensus 79 tq~~I~PG~s~tY~f~~ 95 (552)
T 1aoz_A 79 SQCAINPGETFFYNFTV 95 (552)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred ccCCcCCCCeEEEEEEC
Confidence 479999998 6776664
No 56
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=34.92 E-value=83 Score=19.64 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=10.7
Q ss_pred eeEEEEEEEEcCCCCEE
Q 032005 115 GSYTLKMTMEDKNNEEL 131 (149)
Q Consensus 115 g~~~v~~~l~d~~~~~~ 131 (149)
+.+.++.+.+|++|+.+
T Consensus 108 ~~v~~~~~~~n~~g~~v 124 (134)
T 1iq6_A 108 PIATLTTRIFTQGGALA 124 (134)
T ss_dssp SEEEEEEEEECTTSCEE
T ss_pred CEEEEEEEEEeCCCCEE
Confidence 45566667777766543
No 57
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=34.57 E-value=75 Score=19.03 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=13.8
Q ss_pred CeeEEEEEEEEcCCCCEEE
Q 032005 114 PGSYTLKMTMEDKNNEELT 132 (149)
Q Consensus 114 ~g~~~v~~~l~d~~~~~~~ 132 (149)
+|+|+++++..+..+...+
T Consensus 54 ~G~YtV~Ltv~~g~~~~~a 72 (80)
T 1b4r_A 54 PGRYHVTAVLALGAGSALL 72 (80)
T ss_dssp SEEEEEEEEEECSSCEEEE
T ss_pred CcEEEEEEEEEeCCceEEE
Confidence 6999999999965553333
No 58
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=33.81 E-value=31 Score=21.50 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred CCCCeEEEEEEEEcCCCCCCee-EEEEEEEEcCC
Q 032005 95 IAAGDFVLSHTQTLPSFTPPGS-YTLKMTMEDKN 127 (149)
Q Consensus 95 l~~G~~~~~~~~~ip~~~P~g~-~~v~~~l~d~~ 127 (149)
+++|+|+....+.+|+.+--.. -++++++++.+
T Consensus 55 l~~G~~~vpv~v~lP~gv~vv~~~~v~vtl~~~~ 88 (98)
T 2kps_A 55 KAVGEHTVKIYWQLPAGIEMVSIPDVTYTLKAKE 88 (98)
T ss_dssp CCSSCEEEECCCBCSSCCCCCCCCEEEECEEECC
T ss_pred CCCCeEEEeEEEECCCCEEEEecCcEEEEEEECC
Confidence 5889988888777776543332 25666666543
No 59
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=32.46 E-value=1.2e+02 Score=20.75 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=53.4
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCCCCCeEEEEEEEE
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAGDFVLSHTQT 107 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~~G~~~~~~~~~ 107 (149)
.++|+++.+...|-.-..+..++++|..-+++++. +++++.|-|. ...+--++ .-=|+..|.+.|.+...
T Consensus 4 ~V~i~~V~vl~np~~f~~p~~feI~fEc~e~L~~d-lewkliYVgS----a~s~~~DQ~Ld~v~vGPi~~G~~kFv~~ad 78 (155)
T 1roc_A 4 IVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHD-LEWKLTYVGS----SRSLDHDQELDSILVGPVPVGVNKFVFSAD 78 (155)
T ss_dssp SEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSC-EEEEEEECCC----TTSSCTTEEEEEEEECSCCSEEEEEEEEEC
T ss_pred EEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCC-cEEEEEEEeC----CCcccCceEeeEEEeccccceeEEEEEEcC
Confidence 68999999998888889999999999999987544 6666666442 11222221 24589999876666655
Q ss_pred cC--CCCCC
Q 032005 108 LP--SFTPP 114 (149)
Q Consensus 108 ip--~~~P~ 114 (149)
=| ..+|.
T Consensus 79 pPd~~~Ip~ 87 (155)
T 1roc_A 79 PPSAELIPA 87 (155)
T ss_dssp CCCGGGCCT
T ss_pred CCCcccCCh
Confidence 44 33555
No 60
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=31.81 E-value=39 Score=24.89 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.4
Q ss_pred CCCCCCCCe-EEEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQT 107 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~~ 107 (149)
..||+.||+ ++|.+...
T Consensus 77 t~~~i~pG~~~~Y~f~~~ 94 (276)
T 3kw8_A 77 NKSDVEPGGTRTYTWRTH 94 (276)
T ss_dssp TTCSBCTTCEEEEEEECC
T ss_pred CcCCCCCCCEEEEEEEcC
Confidence 469999998 66655543
No 61
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=31.47 E-value=34 Score=27.68 Aligned_cols=15 Identities=40% Similarity=0.906 Sum_probs=11.7
Q ss_pred CCCCCCCCe-EEEEEE
Q 032005 91 VSCPIAAGD-FVLSHT 105 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~ 105 (149)
..||+.||+ ++|.++
T Consensus 83 tq~~I~PG~~~~Y~f~ 98 (503)
T 1hfu_A 83 NQCPISPGHAFLYKFT 98 (503)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred ccCCcCCCCeEEEEEE
Confidence 579999998 666554
No 62
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=31.20 E-value=1.9e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=23.1
Q ss_pred CCCeEEEEEEEEcCCCCCC----------------eeEEEEEEEE
Q 032005 96 AAGDFVLSHTQTLPSFTPP----------------GSYTLKMTME 124 (149)
Q Consensus 96 ~~G~~~~~~~~~ip~~~P~----------------g~~~v~~~l~ 124 (149)
++|.+.|.+++.+|...|+ ++|.+++.+-
T Consensus 104 ~~G~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i~ 148 (392)
T 1suj_A 104 KLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCA 148 (392)
T ss_dssp HHCSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEE
T ss_pred cccCeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEEc
Confidence 5899999999999877765 4677887774
No 63
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=30.29 E-value=87 Score=18.46 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=15.3
Q ss_pred CCeeEEEEEEEEcCCCCE
Q 032005 113 PPGSYTLKMTMEDKNNEE 130 (149)
Q Consensus 113 P~g~~~v~~~l~d~~~~~ 130 (149)
-+|.|+++++..|.+|..
T Consensus 57 ~~G~Y~v~LtVtd~~G~~ 74 (85)
T 2y72_A 57 KAGTYNVTLKVTDDKGAT 74 (85)
T ss_dssp SCEEEEEEEEEEETTSCE
T ss_pred CCeEEEEEEEEEECCCCE
Confidence 469999999999988853
No 64
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*
Probab=29.92 E-value=85 Score=21.25 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEEEEEEeCeE-ecccEEE--EEEEEC
Q 032005 44 DPVVTGKPATFNISAVTGQA-VYGGKVV--INVAYF 76 (149)
Q Consensus 44 c~~~~G~~~~i~~~~~~~~~-i~~~~~~--v~~~~~ 76 (149)
|+..+|+++..++.|+.... +..|... +.+..+
T Consensus 89 Cg~~KGE~i~~~~~~~~~~~~fpkG~Y~~v~e~~~g 124 (144)
T 3vq2_C 89 CRALKGETVNTSIPFSFEGILFPKGHYRCVAEAIAG 124 (144)
T ss_dssp GGCCTTCCEEEEEEEEECCCCCCSSEEEEEEEEEET
T ss_pred cccccCcEEEEEEEeecCcEEccCCcEEEEEEEecC
Confidence 89999999999999999995 8888654 344444
No 65
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=29.78 E-value=86 Score=27.00 Aligned_cols=80 Identities=10% Similarity=-0.044 Sum_probs=46.7
Q ss_pred CCCCCcEEEEEEEEeCeEecccEEEEEEEECCE---------EeccC--CcCCCCCCCCCCCC-CeEEEEEEEEcCCCCC
Q 032005 46 VVTGKPATFNISAVTGQAVYGGKVVINVAYFGV---------PVHQE--TRDVCEEVSCPIAA-GDFVLSHTQTLPSFTP 113 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi---------~v~~~--~~d~C~~~~CPl~~-G~~~~~~~~~ip~~~P 113 (149)
++||+..+|++.|.-+.+-..-.+.+.+..|.. .+|.. ..+.+=... +.. ....++.++..|...|
T Consensus 76 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~tGp~Ps~~~gT~~~~~l~~~~~~~~W~A~--~~~~~~~~~tvsv~spa~A~ 153 (731)
T 1ex0_A 76 VRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYIPVPIVSELQSGKWGAK--IVMREDRSVRLSIQSSPKCI 153 (731)
T ss_dssp EETTSEEEEEEEESSCCCTTTCCEEEEEECBSSCCGGGTSEEEECEESSCCTTSCEEE--EEEEETTEEEEEEECCTTCC
T ss_pred EcCCCcEEEEEEeCCCCCCCCcEEEEEEEeCCCCCccCCcEEEEEeccCCCCCceEEE--EEecCCCEEEEEEecCCCCe
Confidence 799999999999953332222346666666521 11111 111110000 011 1135778888999999
Q ss_pred CeeEEEEEEEEcCC
Q 032005 114 PGSYTLKMTMEDKN 127 (149)
Q Consensus 114 ~g~~~v~~~l~d~~ 127 (149)
-|+|++.++.....
T Consensus 154 VG~Y~L~v~~~~~~ 167 (731)
T 1ex0_A 154 VGKFRMYVAVWTPY 167 (731)
T ss_dssp CEEEEEEEEEEETT
T ss_pred EEEEEEEEEEEecC
Confidence 99999999987653
No 66
>2f68_X Collagen adhesin; beta barrel, domain SWAP, cell adhesion; 1.95A {Staphylococcus aureus} PDB: 2f6a_A 1amx_A
Probab=28.45 E-value=50 Score=25.11 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=32.8
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEe-CeEecccE-EEEEE
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVT-GQAVYGGK-VVINV 73 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~-~~~i~~~~-~~v~~ 73 (149)
...|++++++|-.+..|+.+.+++.|.+ +..+..|. +.+.+
T Consensus 14 ~~~its~~i~~~~i~~g~~~~v~~~f~~~~~~vK~GDt~~i~L 56 (313)
T 2f68_X 14 STNVTDLTVSPSKIEDGGKTTVKMTFDDKNGKIQNGDMIKVAW 56 (313)
T ss_dssp HHHEEEEEEESSEECTTEEEEEEEEEESSSSCCCTTEEEEEBC
T ss_pred ccceeEEEEcCceecCCceEEEEEEecCCCCCCCCCCEEEEEc
Confidence 4578999999999999999999999996 44788884 45544
No 67
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A
Probab=25.94 E-value=1.5e+02 Score=19.72 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCeEEEEEEEEcCCCCCCe
Q 032005 45 PVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPG 115 (149)
Q Consensus 45 ~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g 115 (149)
++.+|+++++++...+.. ..++.+.+..++- |+..+-.... .+.+...+|++++..+...+..
T Consensus 53 ~L~~G~tY~lsF~A~as~---~r~i~v~i~~~~~--~y~~y~~~~~---~lt~~~q~yt~tFT~~~~~~~~ 115 (149)
T 1gu3_A 53 AIEEGTTYTLRYTATAST---DVTVRALVGQNGA--PYGTVLDTSP---ALTSEPRQVTETFTASATYPAT 115 (149)
T ss_dssp CBCTTCEEEEEEEEEESS---CEECEEEEEESST--TCCEEEEECC---EECSSCEEEEEEEECSSCBCSS
T ss_pred EEcCCCEEEEEEEEEeCC---CcEEEEEEecCCC--Chhhheeeee---EcCCCceEEEEEEECcCCCcCc
Confidence 578999999999988766 3344444433321 2211100100 1333335666777666444444
No 68
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=25.34 E-value=25 Score=30.28 Aligned_cols=53 Identities=4% Similarity=-0.051 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCCCCCCCCCCe-EEEEEE
Q 032005 46 VVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGD-FVLSHT 105 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~~~CPl~~G~-~~~~~~ 105 (149)
...|+++.|++.=.+++.. .+.+-|+.++....|.=.+..||+.||+ ++|.+.
T Consensus 203 ~~~GD~v~v~~~N~l~~~~-------siH~HG~~~~~~~~dG~~~~~~~I~PG~~~tY~f~ 256 (770)
T 2r7e_B 203 AEVEDNIMVTFRNQASRPY-------SFYSSLISYEEDQRQGAEPRKNFVKPNETKTYFWK 256 (770)
T ss_dssp CCSSSCEEEEEECCSSSCC-------CCCBTTCCCCCCSSSCTTTTSSCCCSSCEEEEECC
T ss_pred EEcCCEEEEEEEECCCCCc-------ceeecccccccccCCCCcCccCccCCCCeEEEEEE
Confidence 4677777777654444321 2334455444332212113679999998 566544
No 69
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=24.27 E-value=1.3e+02 Score=25.71 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCCCCCcEEEEEEEEeCeEeccc-EEEEEEEECCEE---------eccCCc-CCCCCCCCCCCC-CeEEEEEEEEcCCCC
Q 032005 45 PVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVP---------VHQETR-DVCEEVSCPIAA-GDFVLSHTQTLPSFT 112 (149)
Q Consensus 45 ~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~---------v~~~~~-d~C~~~~CPl~~-G~~~~~~~~~ip~~~ 112 (149)
.++||+..+|++.|. +..... .+.+.+..|..+ +|.... +.+=+. =+.. ...+++.++..|...
T Consensus 30 IVRRGQ~F~i~l~f~--r~~~~~d~l~l~~~tGp~Ps~~~gT~~~~~l~~~~~~~W~a--~~~~~~~~~~tvsv~spa~A 105 (692)
T 1vjj_A 30 ILRRGQNFQVLMIMN--KGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNGSSGGWSA--VLQASNGNTLTISISSPASA 105 (692)
T ss_dssp EEETTSCEEEEEEES--SCCCTTCEEEEEEECSSSCCTTTTSEEEEEEESSCCSSSEE--EEEEEETTEEEEEEECCTTC
T ss_pred EEcCCCcEEEEEEEC--CCCCCCceEEEEEEeCCCCCcCCCeEEEEEecCCCCCceEE--EEEecCCCEEEEEEeCCCCC
Confidence 368999999999994 444332 455555555211 111000 000000 0000 113667888899999
Q ss_pred CCeeEEEEEEEEcC
Q 032005 113 PPGSYTLKMTMEDK 126 (149)
Q Consensus 113 P~g~~~v~~~l~d~ 126 (149)
|-|+|++.++....
T Consensus 106 ~VG~Y~L~v~~~~~ 119 (692)
T 1vjj_A 106 PIGRYTMALQIFSQ 119 (692)
T ss_dssp CCEEEEEEEEEEET
T ss_pred eEEEEEEEEEEEec
Confidence 99999999998764
No 70
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=24.27 E-value=90 Score=25.55 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.2
Q ss_pred CCCCCCC-Ce-EEEEEEE
Q 032005 91 VSCPIAA-GD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~-G~-~~~~~~~ 106 (149)
..||+.| |+ ++|.+..
T Consensus 112 tq~~I~P~G~~~~Y~f~~ 129 (559)
T 2q9o_A 112 TECPIPPKGGQRTYRWRA 129 (559)
T ss_dssp TBCCBCTTTEEEEEEEEC
T ss_pred ccCccCCCCCeEEEEEEC
Confidence 4699999 98 6766653
No 71
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=24.03 E-value=60 Score=24.81 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.8
Q ss_pred CCCCCCCCe-EEEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQT 107 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~~ 107 (149)
..||+.||+ |+|.+...
T Consensus 118 t~~~I~PG~~~~y~f~~~ 135 (343)
T 3cg8_A 118 NKSDVEPGGTRTYTWRTH 135 (343)
T ss_dssp TTCSBCTTCEEEEEEECC
T ss_pred ccccccCCCEEEEEEEeC
Confidence 379999998 67766553
No 72
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens} SCOP: b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Probab=23.91 E-value=1.9e+02 Score=20.29 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=51.8
Q ss_pred ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCCCCCeEEEEEEE
Q 032005 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAGDFVLSHTQ 106 (149)
Q Consensus 32 ~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~~G~~~~~~~~ 106 (149)
..++|+++.+...|-.-..++.++++|..-++++. .+++++.|-|. ...+--++ .-=|+..|.+.|.+..
T Consensus 27 s~V~i~~V~VlnNp~~F~dP~~FeItfEcle~L~~-dleWkliYVGS----a~s~~~DQ~Ldsv~VGPi~~G~~kFvfea 101 (182)
T 2i32_A 27 AKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE-DLEWKIIYVGS----AESEEYDQVLDSVLVGPVPAGRHMFVFQA 101 (182)
T ss_dssp CSEEEEEEEECSCSEETTSCEEEEEEEEESSCCSS-CEEEEEEEESC----SSCGGGEEEEEEEEECCCCSEEEEEEEEE
T ss_pred cEEEEEEEEEeCCchhcCCCeEEEEEEEEccccCC-CcEEEEEEEcC----CCCccCCeEeeEEEECCccceEEEEEEEe
Confidence 47899999998888788899999999999988744 35555544331 11111121 2358899987666665
Q ss_pred EcC--CCCCC
Q 032005 107 TLP--SFTPP 114 (149)
Q Consensus 107 ~ip--~~~P~ 114 (149)
.=| ..+|.
T Consensus 102 dpPd~~kIP~ 111 (182)
T 2i32_A 102 DAPNPGLIPD 111 (182)
T ss_dssp CCCCGGGSCH
T ss_pred CCCCcccCCh
Confidence 544 33563
No 73
>2z1p_A ACE, collagen adhesin protein; cell adhesion; 2.50A {Enterococcus faecalis}
Probab=23.08 E-value=53 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=31.7
Q ss_pred cEEEeEEEEeCCCCCCCCcEEEEEEEEe--CeEecccE-EEEEE
Q 032005 33 AVTIQQVKIIPDPVVTGKPATFNISAVT--GQAVYGGK-VVINV 73 (149)
Q Consensus 33 ~~~i~~~~i~Pc~~~~G~~~~i~~~~~~--~~~i~~~~-~~v~~ 73 (149)
...|+++++++-.+..|+..+|++.|.. ...+..|. +.+.+
T Consensus 17 ~~~Its~~i~~t~i~~g~~~~v~~~f~~~~~~~iK~GDt~titL 60 (348)
T 2z1p_A 17 SSIVDKVELDHTTLYQGEMTSIKVSFSDKENQKIKPGDTITLTL 60 (348)
T ss_dssp SSCEEEEEESCSEEETTCEEEEEEEEECCSSCC-CCSCCCEEEC
T ss_pred cceEEEEEECCceeccCCeEEEEEEecCcCCCcCCCCCEEEEEc
Confidence 5578999999988999999999999977 35687774 35544
No 74
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex; 2.70A {Homo sapiens} SCOP: b.1.22.1
Probab=22.97 E-value=2e+02 Score=20.09 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=51.1
Q ss_pred ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccCCcCCCCC-----CCCCCCCCeEEEEEEE
Q 032005 32 YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEE-----VSCPIAAGDFVLSHTQ 106 (149)
Q Consensus 32 ~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~~G~~~~~~~~ 106 (149)
..++|.++.+...|-.-..++.++++|..-++++. .+++++.|-|. ...+--++ .-=|+..|.+.|.+..
T Consensus 5 s~V~l~~V~vlnNp~~f~~P~~FeI~fEc~e~L~~-dleWkliYVgS----a~s~~~DQ~Ld~v~VGPi~~G~~kFv~~a 79 (175)
T 2io5_A 5 AKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE-DLEWKIIYVGS----AESEEYDQVLDSVLVGPVPAGRHMFVFQA 79 (175)
T ss_dssp CCEEEEEEEECSCSEETTSCEEEEEEEEESSCCCS-CEEEEEEEECC----TTCGGGEEEEEEEEECSCCSEEEEEEEEE
T ss_pred cEEEEEEEEEeCCccccCCCeEEEEEEEeccccCC-CcEEEEEEEcC----CCCccCCeEeeEEEECCccceEEEEEEEe
Confidence 37899999998888788899999999999987744 35555544331 11111121 2358889987666665
Q ss_pred EcC--CCCCC
Q 032005 107 TLP--SFTPP 114 (149)
Q Consensus 107 ~ip--~~~P~ 114 (149)
.=| ..+|.
T Consensus 80 dpPd~~~IP~ 89 (175)
T 2io5_A 80 DAPNPGLIPD 89 (175)
T ss_dssp CCCCGGGSCH
T ss_pred CCCChhhCCh
Confidence 544 33563
No 75
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=22.06 E-value=43 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.775 Sum_probs=12.0
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
+.||+.||+ |+|.++.
T Consensus 84 tq~pI~PG~sftY~f~~ 100 (495)
T 3t6v_A 84 TQCPIIVGNSFSYNFNV 100 (495)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCCeEEEEEEe
Confidence 579999998 6665554
No 76
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=21.81 E-value=2.8e+02 Score=21.35 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=41.2
Q ss_pred CCCCCcEEEEEEEEeC---eEecccEEEEEEEECCEEeccC----------CcCCCCCCCCCCCCCeEEEEEEEEcCCCC
Q 032005 46 VVTGKPATFNISAVTG---QAVYGGKVVINVAYFGVPVHQE----------TRDVCEEVSCPIAAGDFVLSHTQTLPSFT 112 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~---~~i~~~~~~v~~~~~gi~v~~~----------~~d~C~~~~CPl~~G~~~~~~~~~ip~~~ 112 (149)
...|++++-++..++. +.+....+.+.+. |-+.+.+. ...++.. -=+.+|++ |.+++.+|...
T Consensus 44 Y~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~-G~~e~~~~~~~~~~f~~~~~eL~~p--G~L~~G~~-fpF~F~lp~~l 119 (340)
T 2r51_A 44 FYDGETVSGKVSLSLKNPNKRLEHQGIKIEFI-GQIELYYDRGNHHEFVSLVKDLARP--GEITQSQA-FDFEFTHVEKP 119 (340)
T ss_dssp EETBCCEEEEEEEEESSTTSCEEESCEEEEEE-EEEEEGGGTTCCEEEEEEEEEEECS--EEECSCEE-EEEEECSBCCC
T ss_pred CCCCCEEEEEEEEEECCCCCeeEEEEEEEEEE-EEEEEEecCCCcEEEEEEEEEecCC--CccCCCcE-EeeEeCCCCCC
Confidence 4678888888888888 5443333322221 22222221 1222221 12667776 88888877555
Q ss_pred CC--------eeEEEEEEEE
Q 032005 113 PP--------GSYTLKMTME 124 (149)
Q Consensus 113 P~--------g~~~v~~~l~ 124 (149)
|+ .+|.+++.+.
T Consensus 120 ~eSy~G~~g~IrY~vkv~i~ 139 (340)
T 2r51_A 120 YESYTGQNVKLRYFLRATIS 139 (340)
T ss_dssp SCCEECSSEEEEEEEEEEEC
T ss_pred CcCeEeeeEEEEEEEEEEEE
Confidence 43 4677777664
No 77
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=21.78 E-value=44 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.775 Sum_probs=12.1
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ |+|.++.
T Consensus 83 tq~pI~PG~s~tY~f~~ 99 (499)
T 3pxl_A 83 NQCPISPGHSFLYDFQV 99 (499)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCCeEEEEEEc
Confidence 579999998 6665554
No 78
>3klq_A Putative pilus anchoring protein; CNAB fold, inverse IGG fold, polyproline-II-like helix, cell; 1.90A {Streptococcus pyogenes}
Probab=21.68 E-value=1.9e+02 Score=19.36 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=23.9
Q ss_pred CCCeEEEEEEEEcCCC-----CCCeeEEEEEEEEcC-CCCEEEEE
Q 032005 96 AAGDFVLSHTQTLPSF-----TPPGSYTLKMTMEDK-NNEELTCF 134 (149)
Q Consensus 96 ~~G~~~~~~~~~ip~~-----~P~g~~~v~~~l~d~-~~~~~~C~ 134 (149)
++|.|+|+.+-. ... |=...|.|.+...++ +|.-.+.+
T Consensus 59 ~~G~Y~YtI~E~-~G~~~gvtYD~~~y~VtV~V~~d~~G~L~A~v 102 (141)
T 3klq_A 59 TVGQYTYRVYQK-PSQNKDYQADTTVFDVLVYVTYDEDGTLVAKV 102 (141)
T ss_dssp SCEEEEEEEEEC-CCSSTTEECCCCEEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEEEEe-CCCCCCcEEcCCEEEEEEEEEECCCCCEEEEE
Confidence 578888887764 222 333567888888864 45555544
No 79
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=21.02 E-value=1.3e+02 Score=21.17 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=27.6
Q ss_pred ccceeeCCCCCCccEEEeEEEEe-CC--------CCCCCCcEEEEEEEEeCeE
Q 032005 20 AIGVKYCDKKKNYAVTIQQVKII-PD--------PVVTGKPATFNISAVTGQA 63 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~~~i~-Pc--------~~~~G~~~~i~~~~~~~~~ 63 (149)
.+.+++-|+. .+.|+++..+ .| ++..|+...|++.|.+...
T Consensus 139 ~f~i~N~G~~---pL~I~~v~~scgct~~~~~~~~i~PGe~~~i~v~~~~~~~ 188 (220)
T 2qsv_A 139 AIEIRNVGAG---PLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVDPQVM 188 (220)
T ss_dssp EEEEEECSSS---CEEEEEEEECSTTEEEEESCSEECTTCEEEEEEEECHHHH
T ss_pred EEEEEECCCC---CEEEEEEEeCCCCEeeecCCccCCCCCEEEEEEEEecCCC
Confidence 3556666553 6677776532 22 4788999999999887664
No 80
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=20.84 E-value=2.8e+02 Score=22.32 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCCeE-EEEEEEEcCCCCCCeeEEEEEEEEcCCCCEE
Q 032005 95 IAAGDF-VLSHTQTLPSFTPPGSYTLKMTMEDKNNEEL 131 (149)
Q Consensus 95 l~~G~~-~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~ 131 (149)
+++|+. +...++.+|.....|.|.+.+.+..++++.-
T Consensus 411 ~~~g~~~t~~~~vt~~~~~~~g~y~l~~~~~~~~~~~s 448 (601)
T 1w8o_A 411 LMPGRQAKGQVTITVPAGTTPGRYRVGATLRTSAGNAS 448 (601)
T ss_dssp BCTTCEEEEEEEEECCTTCCCEEEEEEEEEEETTEEEE
T ss_pred cCCCCceEEEEEEecCCCCCCCcEEeeEEEEecCceeE
Confidence 567884 7788999998888899999999998766543
No 81
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=20.03 E-value=46 Score=26.48 Aligned_cols=16 Identities=0% Similarity=-0.093 Sum_probs=11.9
Q ss_pred CCCCCCCCe-EEEEEEE
Q 032005 91 VSCPIAAGD-FVLSHTQ 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ ++|.++.
T Consensus 89 ~~~~i~PG~~~~Y~f~~ 105 (451)
T 2uxt_A 89 PARMMSPNADWAPVLPI 105 (451)
T ss_dssp GGGCBCTTCEECCEEEC
T ss_pred CcCcCCCCCeEEEEEEc
Confidence 379999998 6665554
Done!