BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032006
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV-VFPQWLQ 72
D DMIF+P++ G HW LA+ + R ++ DSL P+ + +++
Sbjct: 367 DCDMIFVPIHRGV-HWTLAVINNRESKLLYLDSL----------NGVDPMILNALAKYMG 415
Query: 73 DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
D ++ A+ W + V+D+PQQ+ G DCG+FML + + GL L F H
Sbjct: 416 DEANEKSGKKI-DANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMP 473
Query: 133 YFRKKIAVDIF 143
YFR + A +I
Sbjct: 474 YFRLRTAKEIL 484
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 15 VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
VD++ +P++LG HW LA+ D R + + YDS+ + + Q+L+
Sbjct: 522 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 571
Query: 75 GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
R E + + W++ + +++PQQ GS DCG+F + + ++F H
Sbjct: 572 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 629
Query: 133 YFRKKIAVDIF 143
YFRK++ +I
Sbjct: 630 YFRKRMVWEIL 640
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 15 VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
VD++ +P++LG HW LA+ D R + + YDS+ + + Q+L+
Sbjct: 521 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 570
Query: 75 GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
R E + + W++ + +++PQQ GS DCG+F + + ++F H
Sbjct: 571 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 628
Query: 133 YFRKKIAVDIF 143
YFRK++ +I
Sbjct: 629 YFRKRMVWEIL 639
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 15 VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
VD++ +P++LG HW LA+ D R + + YDS+ + + Q+L+
Sbjct: 517 VDILLVPIHLGV-HWCLAVVDFRRKSITYYDSMGGINNEACR---------ILLQYLKQE 566
Query: 75 GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
R E + + W++ + +++PQQ GS DCG+F + + ++F H
Sbjct: 567 SVDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 624
Query: 133 YFRKKIAVDIF 143
YFRK++ +I
Sbjct: 625 YFRKRMVWEIL 635
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
D D+IF+P+++ HW L + + R R+ DSL T T L ++L D
Sbjct: 218 DCDIIFVPIHIDI-HWTLGVINNRERKFVYLDSLFTG-VGHTILN-------AMAKYLVD 268
Query: 74 VGFYNIRPELQS---ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSH 130
++ + Q W + V++ PQQ+ G DCG+FML + + GL L F
Sbjct: 269 ----EVKQKSQKNIDVSSWGMEYVEERPQQQNGY-DCGMFMLKYIDFYSRGLSLQFSQKD 323
Query: 131 GHYFRKKIAVDIF 143
YFR + A +I
Sbjct: 324 MPYFRLRTAKEIL 336
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
D D IFIP+++ HW LA+ +++ ++ + DS RE K L F ++D
Sbjct: 380 DCDKIFIPIHMN-IHWTLAVINIKDQKFQYLDSFKG-REPKI----LDALARYFVDEVRD 433
Query: 74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
++ W+ V+D+P Q G DCG+FM+ + + GL L F Y
Sbjct: 434 KSEVDL-----DVSRWRQEFVQDLPMQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPY 487
Query: 134 FRKKIAVDIF 143
FR + A +I
Sbjct: 488 FRARTAKEIL 497
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 16 DMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQ---WLQ 72
D++ +PV+LG HW +A+ D+ +++ YDSL + V P +L+
Sbjct: 574 DIVLVPVHLGM-HWCMAVIDMGEKKIEFYDSL------------YDGNTAVLPALRGYLE 620
Query: 73 DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
+ + + W ++ + D+P+Q+ GS DCGVF F + F +
Sbjct: 621 AESLDKKKTAMNFSG-WTIQQMTDIPRQQNGS-DCGVFSCQFGEWASRRTTPRFTQKNMP 678
Query: 133 YFRKKIAVDI 142
Y+RK++ +I
Sbjct: 679 YYRKRMVYEI 688
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 15 VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
+D IF P+NL HW L + DL+ + + DSL P + F L D+
Sbjct: 501 LDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSN-----------GPNAMSF-AILTDL 548
Query: 75 GFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYF 134
Y + + I D PQQ P DCG+++ M T+Y LDFD
Sbjct: 549 QKYVMEESKHTIGEDFDLIHLDCPQQ-PNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRM 607
Query: 135 RKKIA 139
R+ IA
Sbjct: 608 RRFIA 612
>sp|B0BAX8|CDUB2_CHLTB Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2b (strain UCH-1/proctitis) GN=cdu2 PE=3 SV=1
Length = 339
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DSL + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAVSLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|B0B999|CDUB2_CHLT2 Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=cdu2 PE=3
SV=1
Length = 339
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DSL + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAVSLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|C4PLJ4|CDUB2_CHLTZ Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar B (strain TZ1A828/OT) GN=cdu2 PE=3 SV=1
Length = 339
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DS + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAASLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|Q3KKG9|CDUB2_CHLTA Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar A (strain HAR-13 / ATCC VR-571B) GN=cdu2 PE=3
SV=1
Length = 339
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DS + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAASLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|C4PQQ9|CDUB2_CHLTJ Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar B (strain Jali20/OT) GN=cdu2 PE=3 SV=1
Length = 339
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DS + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEHRCVTFFDSFYNYIASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAASLGAIYP---KEGGSDSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|D3UTF3|CDUB2_CHLTS Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
serovar E (strain Sweden2) GN=cdu2 PE=3 SV=1
Length = 339
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DS + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAASLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|O84875|CDUB2_CHLTR Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=cdu2 PE=1 SV=1
Length = 339
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 2 DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
D D + T +D +G HWVL + D+ R + +DS + +R+
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEHRCVTFFDSFYDYIASPQQMREQL 236
Query: 60 ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
L ++P ++ G + + EL S P++VRI V Q PG CG + F
Sbjct: 237 EGLAASLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291
Query: 117 YLMFGLKLDFD 127
+ + D +
Sbjct: 292 WYLENPDFDLE 302
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDS-----------LVTFREDKTYLRKFKP 62
D +++ +P++ HW L + DLR + ++ DS L+ + +D++ ++
Sbjct: 464 DQELVLVPIHRKV-HWSLVVMDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNTD 522
Query: 63 LQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL 122
L ++ +W Y+++P ++PQQ GS DCG+F + Y+
Sbjct: 523 LNLL--EWTH----YSMKPH-------------EIPQQLNGS-DCGMFTCKYADYISRDK 562
Query: 123 KLDFDSSHGHYFRKKIAVDIF 143
+ F FRKK+ +I
Sbjct: 563 PITFTQHQMPLFRKKMVWEIL 583
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 17 MIFIPVNLGGDHWVLALADLRARRMRIYDSL-VTFREDKTYLRKFKPLQVVFPQWLQDVG 75
++ IP++L HW L L +R + YDS + F+ +RK+ L +
Sbjct: 630 LLLIPIHLEV-HWSLITVTLSSRIISFYDSQGIHFKFCVENIRKY---------LLTEAR 679
Query: 76 FYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFR 135
N RPE W+ + K +PQQ+ S DCGVF+L + L F R
Sbjct: 680 EKN-RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVR 735
Query: 136 KKI 138
K+I
Sbjct: 736 KRI 738
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 17 MIFIPVNLGGDHWVLALADLRARRMRIYDSL-VTFREDKTYLRKFKPLQVVFPQWLQDVG 75
++ IP++L HW L L R + YDS + F+ +RK+ L +
Sbjct: 636 LLLIPIHLEV-HWSLITVTLSNRIISFYDSQGIHFKFCVENIRKY---------LLTEAR 685
Query: 76 FYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFR 135
N RPE W+ + K +PQQ+ S DCGVF+L + L F R
Sbjct: 686 EKN-RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVR 741
Query: 136 KKI 138
K+I
Sbjct: 742 KRI 744
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 16 DMIFIPVNLGGDHWVLALADLRARRMRIYDS-----------LVTFREDKTYLRKFKPLQ 64
+++ +P++ HW L + DLR + ++ DS L+ + +D++ ++ L
Sbjct: 466 ELVLVPIHRKV-HWSLVVMDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNTDLN 524
Query: 65 VVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKL 124
++ +W Y+++P ++PQQ GS DCG+F + Y+ +
Sbjct: 525 LL--EWTH----YSMKPH-------------EIPQQLNGS-DCGMFTCKYADYISRDKPI 564
Query: 125 DFDSSHGHYFRKKIAVDIF 143
F FRKK+ +I
Sbjct: 565 TFTQHQMPLFRKKMVWEIL 583
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 17 MIFIPVNLGGDHWVLALADLRARRMRIYDSL-VTFREDKTYLRKFKPLQVVFPQWLQDVG 75
++ IP++L HW L L R + YDS + F+ +RK+ L +
Sbjct: 636 LLLIPIHLEV-HWSLITVTLSNRIISFYDSQGIHFKFCVENIRKY---------LLTEAR 685
Query: 76 FYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFR 135
N RPE W+ + K +PQQ+ S DCGVF+L + L F R
Sbjct: 686 EKN-RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVR 741
Query: 136 KKI 138
K+I
Sbjct: 742 KRI 744
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 16 DMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVG 75
++I +P++ HW L + DLR + ++ DS+ +K + + Q+LQD
Sbjct: 467 EIILVPIHRKV-HWSLVVIDLRKKCLKYLDSMG---------QKGHRICEILLQYLQDES 516
Query: 76 FYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
+L + W +K ++PQQ GS DCG+F + Y+ + F
Sbjct: 517 KTKRNSDLNLLE-WTHHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPL 574
Query: 134 FRKKIAVDIF 143
FRKK+ +I
Sbjct: 575 FRKKMVWEIL 584
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 32/139 (23%)
Query: 16 DMIFIPVNLGGDHWVLALADLRARRMRIYDS-----------LVTFREDKTYLRKFKPLQ 64
++I +P++ HW L + DLR + ++ DS L+ + +D++ ++ L
Sbjct: 467 EIILVPIHRKV-HWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNIDLN 525
Query: 65 VVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKL 124
++ +W Y+++P ++PQQ GS DCG+F + Y+ +
Sbjct: 526 LL--EWTH----YSMKPH-------------EIPQQLNGS-DCGMFTCKYADYISRDKPI 565
Query: 125 DFDSSHGHYFRKKIAVDIF 143
F FRKK+ +I
Sbjct: 566 TFTQHQMPLFRKKMVWEIL 584
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 16/134 (11%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
D+D +FIPV+L HW +A+ + +R +DSL P +V L+D
Sbjct: 450 DMDAVFIPVHLDV-HWCMAVINKSKKRFEYWDSLAG-----------SPGKVF--DLLRD 495
Query: 74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
+ + +D W+ + + P+Q G DCGVF + + + F +
Sbjct: 496 YYIAETKGAVDVSD-WENFMDDNSPRQRNGH-DCGVFACKTAECVSRNVPVQFSQNDMPE 553
Query: 134 FRKKIAVDIFPGDI 147
R K+A I I
Sbjct: 554 LRIKMAASIIDAQI 567
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
+ +++ IP++L HW L D+R R + +DS T L + P + ++LQ
Sbjct: 446 NKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRT-------LNRRCPKHIA--KYLQA 495
Query: 74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
R + WK +V +Q S DCG F+L + +L F
Sbjct: 496 EAVKKDRLDFHQG--WKGYFKMNVARQNNDS-DCGAFVLQYCKHLALSQPFSFTQQDMPK 552
Query: 134 FRKKIAVDI 142
R++I ++
Sbjct: 553 LRRQIYKEL 561
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 14 DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
+ +++ IP++L HW L D+R R + +DS T L + P + ++LQ
Sbjct: 452 NKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRT-------LNRRCPKHIA--KYLQA 501
Query: 74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
R + WK +V +Q S DCG F+L + +L F
Sbjct: 502 EAVKKDRLDFHQG--WKGYFKMNVARQNNDS-DCGAFVLQYCKHLALSQPFSFTQQDMPK 558
Query: 134 FRKKIAVDI 142
R++I ++
Sbjct: 559 LRRQIYKEL 567
>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2
SV=1
Length = 226
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 27/107 (25%)
Query: 14 DVDMIFIPVN--------LGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
D D++ +PVN GG HW L LV ++E T++ + V
Sbjct: 84 DKDLLILPVNDNSNVEVAEGGLHWSL---------------LVYYKEANTFVHHDSYMGV 128
Query: 66 VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFML 112
+W F + P + + D + D PQQ+ G DCGVF+L
Sbjct: 129 --NRWSAKQLFKAVSPFVSNGDA-SYKECTDTPQQKNGY-DCGVFLL 171
>sp|C4PQR0|CDUB1_CHLTJ Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar B (strain Jali20/OT) GN=cdu1 PE=3 SV=1
Length = 418
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF---RED-KTYLRKF-KPLQVVFPQWLQDVGFY 77
++G HW+L + D++ARR+ +DSL + ED K L+ F + L V+P + D +
Sbjct: 283 SVGASHWLLVIVDIQARRLVYFDSLYNYVMSPEDMKKDLQSFAQQLDQVYPAY--DSQIF 340
Query: 78 NIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMF 114
+++ K+V Q+ GS CG + F
Sbjct: 341 SVK-----------IAAKEVIQKGSGSS-CGAWCCQF 365
>sp|C4PLJ5|CDUB1_CHLTZ Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar B (strain TZ1A828/OT) GN=cdu1 PE=3 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 283 SVGASHWLLVIVDIQARRLVYFDSLYNY 310
>sp|D3UTF4|CDUB1_CHLTS Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar E (strain Sweden2) GN=cdu1 PE=3 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 283 SVGASHWLLVIVDIQARRLVYFDSLYNY 310
>sp|Q3KKG8|CDUB1_CHLTA Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar A (strain HAR-13 / ATCC VR-571B) GN=cdu1 PE=3
SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 283 SVGASHWLLVIVDIQARRLVYFDSLYNY 310
>sp|O84876|CDUB1_CHLTR Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=cdu1 PE=1 SV=1
Length = 418
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 283 SVGASHWLLVIVDIQARRLVYFDSLYNY 310
>sp|B0B9A0|CDUB1_CHLT2 Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=cdu1 PE=1
SV=1
Length = 401
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 270 SVGASHWLLVIVDIQARRLVYFDSLYNY 297
>sp|B0BAX9|CDUB1_CHLTB Deubiquitinase and deneddylase Dub1 OS=Chlamydia trachomatis
serovar L2b (strain UCH-1/proctitis) GN=cdu1 PE=3 SV=1
Length = 403
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 NLGGDHWVLALADLRARRMRIYDSLVTF 50
++G HW+L + D++ARR+ +DSL +
Sbjct: 272 SVGASHWLLVIVDIQARRLVYFDSLYNY 299
>sp|Q9VHM2|U505_DROME UPF0505 protein CG8202 OS=Drosophila melanogaster GN=CG8202 PE=2
SV=3
Length = 942
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 48 VTFREDKTYLRK-FKPLQVVFPQWLQDVGFYNIRPELQSADPW 89
VT KTY+R+ F L +++PQ + V +N+ PE+ +A +
Sbjct: 328 VTLTSSKTYIRENFADLFLIYPQIFRFVARFNLHPEIVTASSY 370
>sp|Q8H111|NLP1_ARATH Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1
Length = 909
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 67 FPQWLQDVGFY--NIRPELQSADPWKVRIVKDVPQQEPGSGDC-GVFMLMFTMYLM 119
FP+W DV F+ + P ++ A VR +P E GSG C GV ++ T M
Sbjct: 209 FPEWTPDVRFFRRDEYPRIKEAQKCDVRGSLALPVFERGSGTCLGVVEIVTTTQKM 264
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 14 DVDMIFIPVNLGGDHWVLALAD---LRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQW 70
D D I +PVN +HW LA+ R I+DS +T D L+ L F ++
Sbjct: 222 DFDYIVVPVN-EWEHWSLAVICHPFTAQARTVIFDSQLT--ADLNNLQNMATLIESFMKY 278
Query: 71 LQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDS 128
+ N P P + + +PQQ + DCG+F+ F + D D+
Sbjct: 279 SYEKRTGNAMPF-----PLPCILPQRMPQQ-TNNFDCGIFIAEFARRFLLSPPKDLDN 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.146 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,461,809
Number of Sequences: 539616
Number of extensions: 2187204
Number of successful extensions: 5370
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5328
Number of HSP's gapped (non-prelim): 38
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)