Query 032006
Match_columns 149
No_of_seqs 111 out of 1058
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 1.8E-33 6.2E-38 210.4 15.1 126 11-148 99-226 (226)
2 2xph_A Sentrin-specific protea 100.0 3.7E-33 1.3E-37 210.2 14.5 126 11-148 111-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 3.2E-30 1.1E-34 192.2 15.5 124 11-147 97-220 (221)
4 2bkr_A Sentrin-specific protea 99.9 1.1E-26 3.7E-31 172.1 10.4 116 11-144 79-208 (212)
5 2oix_A Xanthomonas outer prote 99.9 1.7E-24 5.6E-29 157.5 9.1 110 15-145 62-181 (186)
6 3eay_A Sentrin-specific protea 99.9 2.1E-23 7.1E-28 162.3 13.5 121 11-144 117-312 (323)
7 4ekf_A Adenain; alpha and beta 98.1 8.4E-05 2.9E-09 53.0 12.1 93 16-120 37-135 (204)
8 2xl1_A Arginine attenuator pep 39.0 7 0.00024 17.9 0.1 8 1-8 1-8 (26)
9 3zua_A CLD, alpha-hemolysin tr 38.9 49 0.0017 21.3 4.5 24 26-49 86-109 (142)
10 3b79_A Toxin secretion ATP-bin 26.2 85 0.0029 19.5 3.9 23 25-47 77-100 (129)
11 1ttw_A Secretion chaperone; ch 25.7 24 0.00081 23.4 1.0 28 5-33 64-93 (138)
12 3o65_A Putative ataxin-3-like 20.8 78 0.0027 22.3 3.0 29 18-49 111-139 (191)
13 3rnv_A HC-Pro, helper componen 20.6 86 0.0029 21.5 3.1 20 31-50 106-125 (158)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.8e-33 Score=210.44 Aligned_cols=126 Identities=25% Similarity=0.468 Sum_probs=111.2
Q ss_pred hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006 11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK 90 (149)
Q Consensus 11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~ 90 (149)
.+.++|+||+|||. ++||+|++||+++++|.+|||+++ .+....+.+ ..|+..++..+.+..+ +..+|+
T Consensus 99 ~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~l-------~~~l~~e~~~k~~~~~-~~~~w~ 167 (226)
T 1th0_A 99 NLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQ--KGHRICEIL-------LQYLQDESKTKRNSDL-NLLEWT 167 (226)
T ss_dssp CGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHTSCCC-CGGGCE
T ss_pred CcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCCCC--CchHHHHHH-------HHHHHHHHHHhcCCCC-Ccccce
Confidence 45578899999999 999999999999999999999999 666555554 7788877766666677 778898
Q ss_pred EEe--ccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006 91 VRI--VKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA 148 (149)
Q Consensus 91 ~~~--~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~ 148 (149)
+.. ..++|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++||
T Consensus 168 ~~~~~~~~~PqQ~Ng-~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 168 HHSMKPHEIPQQLNG-SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp EEECCTTTSCCCCSS-SCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred eccccCCCCCCCCCC-CCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence 753 4699999999 99999999999999999999999999999999999999999986
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=3.7e-33 Score=210.23 Aligned_cols=126 Identities=28% Similarity=0.579 Sum_probs=110.7
Q ss_pred hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006 11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK 90 (149)
Q Consensus 11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~ 90 (149)
.+.++|+||+|||. ++||+|++||.++++|.+|||+++ .+....+.+ ..|+..++..+.+..+ +..+|+
T Consensus 111 ~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~--~~~~~~~~l-------~~~L~~e~~~k~~~~~-~~~~w~ 179 (238)
T 2xph_A 111 DVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG--INNEACRIL-------LQYLKQESIDKKRKEF-DTNGWQ 179 (238)
T ss_dssp CGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHHCSCC-CCTTCE
T ss_pred CcccCCEEEEcccC-CCceEEEEEEcccceEEEeecccC--CCHHHHHHH-------HHHHHHHHHHhcCCCc-Ccccce
Confidence 45578999999999 899999999999999999999998 666555444 7777777766656667 778998
Q ss_pred EEe--ccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006 91 VRI--VKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA 148 (149)
Q Consensus 91 ~~~--~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~ 148 (149)
+.. ..++|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++||
T Consensus 180 ~~~~~~~~~PqQ~Ng-~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 180 LFSKKSQEIPQQMNG-SDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp EEECCSSSSCCCSBG-GGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred ecccCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence 753 4799999999 99999999999999999999999999999999999999999986
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.97 E-value=3.2e-30 Score=192.24 Aligned_cols=124 Identities=27% Similarity=0.447 Sum_probs=101.4
Q ss_pred hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006 11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK 90 (149)
Q Consensus 11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~ 90 (149)
.+.++|+||+|||.+++||+|++|++++++|.+|||++.. .+....+. .+.+..|+..++..+.+ .+|+
T Consensus 97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~-~~~~~~~i----~~~l~~~l~~e~~~~~~------~~~~ 165 (221)
T 1euv_A 97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNG-PNAMSFAI----LTDLQKYVMEESKHTIG------EDFD 165 (221)
T ss_dssp CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCS-CCHHHHHH----HHHHHHHHHHHTTSSSC------TTCE
T ss_pred CcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCC-CcchHHHH----HHHHHHHHHHHHHHhcC------CCce
Confidence 3457899999999977999999999999999999999862 23221111 23347788777654433 3456
Q ss_pred EEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006 91 VRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI 147 (149)
Q Consensus 91 ~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l 147 (149)
+.. ..+|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++|
T Consensus 166 ~~~-~~~PqQ~N~-~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 166 LIH-LDCPQQPNG-YDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp EEE-ECCCCCSSS-STHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred Eee-cCCCCCCCC-cCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence 544 799999999 9999999999999999999999999999999999999999886
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.94 E-value=1.1e-26 Score=172.07 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=90.2
Q ss_pred hccccCEEEEeeec------CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCC
Q 032006 11 LFTDVDMIFIPVNL------GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQ 84 (149)
Q Consensus 11 ~~~~~d~I~iPin~------~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 84 (149)
.+.++++||+|||. +++||+|++|+.++++|.+|||+++ .+....+.+ .+.+..++..+ .
T Consensus 79 ~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~--~n~~~~~~l---~~~l~~~l~~~----~----- 144 (212)
T 2bkr_A 79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR--SNSVHAKQV---AEKLEAFLGRK----G----- 144 (212)
T ss_dssp TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT--TTHHHHHHH---HHHHHHHHSCT----T-----
T ss_pred ccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC--CCHHHHHHH---HHHHHHHhCCc----c-----
Confidence 45689999999996 5899999999999999999999998 665554333 23334444221 1
Q ss_pred CCCCceEEeccCCCcCCCCCCCchHHHHHHHHHHhcCC----C----ceeccccHHHHHHHHHHHHhc
Q 032006 85 SADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL----K----LDFDSSHGHYFRKKIAVDIFP 144 (149)
Q Consensus 85 ~~~~w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~----~----~~~~~~~~~~~R~~~~~~l~~ 144 (149)
.+|++.. .++|||.|| +|||||||+||++++.+. + .+|+++++..+|++|+..|.+
T Consensus 145 --~~~~~~~-~~~PqQ~N~-~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 145 --DKLAFVE-EKAPAQQNS-YDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp --CCCCEEE-CCCCCCSSS-STHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred --ccceEeE-CCCCCCCCC-CcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 1344443 789999999 999999999999998874 1 358899999999999988764
No 5
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.91 E-value=1.7e-24 Score=157.52 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=81.3
Q ss_pred cCEEEEeeecCCCeEEEEEEEcCCCeE---EEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCceE
Q 032006 15 VDMIFIPVNLGGDHWVLALADLRARRM---RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKV 91 (149)
Q Consensus 15 ~d~I~iPin~~~~HW~l~vvd~~~~~i---~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~~ 91 (149)
+|+||+|||.+++||+|++|+.+++++ .+|||+++ .+... +.+ .+.+..++.. +. . ++
T Consensus 62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~--~~~~~-~~l---~~~l~~~l~~--------~~---~--~~ 122 (186)
T 2oix_A 62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQ--KDPQQ-RYL---ADMAAYHLGL--------DY---Q--QT 122 (186)
T ss_dssp CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSS--CCHHH-HHH---HHHHHHHTTC--------CG---G--GC
T ss_pred cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCC--CCHHH-HHH---HHHHHHHhCC--------Cc---c--cc
Confidence 899999999988999999999999999 99999998 55442 122 2222333311 11 1 12
Q ss_pred EeccCCCcCCCCCCCchHHHHHHHHHHhcC----CC---ceeccccHHHHHHHHHHHHhcC
Q 032006 92 RIVKDVPQQEPGSGDCGVFMLMFTMYLMFG----LK---LDFDSSHGHYFRKKIAVDIFPG 145 (149)
Q Consensus 92 ~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~----~~---~~~~~~~~~~~R~~~~~~l~~~ 145 (149)
...++|||.|| +|||||||.|+++++.+ .. ..++.+++..+|++|...|.+.
T Consensus 123 -~~~~~PqQ~Ng-~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 123 -HEMPIAIQSDG-YSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp -EEECBCCCC---CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred -ccCCCCCCCCC-CCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 23689999999 99999999999998753 21 2477889999999999988765
No 6
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=162.29 Aligned_cols=121 Identities=23% Similarity=0.318 Sum_probs=97.7
Q ss_pred hccccCEEEEeeecCCCeEEEEEEEcCC----------------------------------------------------
Q 032006 11 LFTDVDMIFIPVNLGGDHWVLALADLRA---------------------------------------------------- 38 (149)
Q Consensus 11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~---------------------------------------------------- 38 (149)
++.++|+||||||. +.||+|++|+.+.
T Consensus 117 dlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 195 (323)
T 3eay_A 117 NIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESN 195 (323)
T ss_dssp CGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC---------------------------------------------
T ss_pred ccccCCEEEEecCC-CCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999 9999999999863
Q ss_pred ----------CeEEEEcCCCCCCCC-HHHHhhhcchHHHHHHHHHHHhcccC--CCCCCCCCCceEEeccCCCcCCCCCC
Q 032006 39 ----------RRMRIYDSLVTFRED-KTYLRKFKPLQVVFPQWLQDVGFYNI--RPELQSADPWKVRIVKDVPQQEPGSG 105 (149)
Q Consensus 39 ----------~~i~~~DSl~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~w~~~~~~~~p~Q~n~s~ 105 (149)
.+|.+||||++ .. ..+.+.+ +.|+..|+..+. ...| +...|+... +.+|+|.|+ +
T Consensus 196 ~~~~~~~~k~pcIl~lDSL~~--~~~~~~~~~L-------r~YL~~E~~~k~~~~~~f-~~~~~~~~~-~~~P~Q~N~-~ 263 (323)
T 3eay_A 196 MSVPKKMCKRPCILILDSLKA--ASVQNTVQNL-------REYLEVEWEVKLKTHRQF-SKTNMVDLC-PKVPKQDNS-S 263 (323)
T ss_dssp ----CCCCBCSEEEEECSSCC--SSHHHHHHHH-------HHHHHHHHHHHHSSCCCC-CTTTSCEEC-CBCCCCCST-T
T ss_pred cccccccCCCCeEEEEECCCC--CCcchHHHHH-------HHHHHHHHHhhcCCCcCC-CHhHceecc-CCCCCcCCC-C
Confidence 26999999998 43 4555555 999999988653 3455 566787654 789999999 9
Q ss_pred CchHHHHHHHHHHhcCCCc----------eeccccHHHHHHHHHHHHhc
Q 032006 106 DCGVFMLMFTMYLMFGLKL----------DFDSSHGHYFRKKIAVDIFP 144 (149)
Q Consensus 106 dCGvfvl~~~~~~~~~~~~----------~~~~~~~~~~R~~~~~~l~~ 144 (149)
|||+|||+||+++..+.++ +|+.+++...|.++..-|..
T Consensus 264 DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~ 312 (323)
T 3eay_A 264 DCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILK 312 (323)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754 35667889999998877653
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=98.11 E-value=8.4e-05 Score=53.01 Aligned_cols=93 Identities=19% Similarity=0.341 Sum_probs=56.9
Q ss_pred CEEEEeeec-----CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCC-c
Q 032006 16 DMIFIPVNL-----GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADP-W 89 (149)
Q Consensus 16 d~I~iPin~-----~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-w 89 (149)
..--..||. ||.||..++.|+..++++.|||.+- .+++..+.- .+. ...+++..+... .++. .
T Consensus 37 k~a~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDPfG~--sd~~L~qiY-~F~--Y~~llkRSAL~s------spdRCv 105 (204)
T 4ekf_A 37 KLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGF--SDQRLKQVY-QFE--YESLLRRSAIAS------SPDRCI 105 (204)
T ss_dssp SCEEEEEESCC----CCCEEEEEEETTTTEEEEECTBTT--CSHHHHHHH-HHH--HHHHHHHHCC--------------
T ss_pred CcceeEEecCCcccCceeEEEeEecCCcceEEEeCCCCC--CHHHHHHHh-hhh--HHHHHHHHhhcC------CCCcee
Confidence 344666777 5899999999999999999999999 766543321 110 122233222211 0111 1
Q ss_pred eEEeccCCCcCCCCCCCchHHHHHHHHHHhc
Q 032006 90 KVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 120 (149)
Q Consensus 90 ~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~ 120 (149)
+++. ..-..|-..|.-||.|+|.|+.++..
T Consensus 106 ~Lvk-stqsVQcp~SaACGLFC~lFL~aF~~ 135 (204)
T 4ekf_A 106 TLEK-STQSVQGPNSAAAGLFCCMFLHAFAN 135 (204)
T ss_dssp EEEE-CCSBCSCTTCCCHHHHHHHHHHHHHH
T ss_pred EEEe-ccccccCcCchhHHHHHHHHHHHHHh
Confidence 3332 23335555559999999999999865
No 8
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=38.97 E-value=7 Score=17.85 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=4.8
Q ss_pred CCcchhhh
Q 032006 1 MDGREDLM 8 (149)
Q Consensus 1 ~~~~~~~~ 8 (149)
|+||++.+
T Consensus 1 mngrpsvf 8 (26)
T 2xl1_A 1 MNGRPSVF 8 (26)
T ss_pred CCCCCcee
Confidence 56666654
No 9
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=38.90 E-value=49 Score=21.34 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCeEEEEEEEcCCCeEEEEcCCCC
Q 032006 26 GDHWVLALADLRARRMRIYDSLVT 49 (149)
Q Consensus 26 ~~HW~l~vvd~~~~~i~~~DSl~~ 49 (149)
++|.+++-++.+.+.+.+.||-.+
T Consensus 86 g~~~Vv~~~~~~~~~~~I~dP~~g 109 (142)
T 3zua_A 86 GRHFILTKVSKEANRYLIFDLEQR 109 (142)
T ss_dssp SCCEEEEEEETTTTEEEEEETTTT
T ss_pred CCEEEEEEEeCCCCEEEEEcCCCC
Confidence 668777766655578999999755
No 10
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=26.17 E-value=85 Score=19.51 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=16.0
Q ss_pred CCCeEEEEE-EEcCCCeEEEEcCC
Q 032006 25 GGDHWVLAL-ADLRARRMRIYDSL 47 (149)
Q Consensus 25 ~~~HW~l~v-vd~~~~~i~~~DSl 47 (149)
+++||+++. ++-+...+.+.||-
T Consensus 77 ~~~h~vVl~~~~~~~~~~~i~dp~ 100 (129)
T 3b79_A 77 KGGDSCVLNSINMETREAEVTTLE 100 (129)
T ss_dssp GGGEEEEEEEEETTTTEEEEECTT
T ss_pred cCCCEEEEEEEcCCCceEEEEccC
Confidence 456988774 55433379999987
No 11
>1ttw_A Secretion chaperone; chaperone, type III secretion; 2.38A {Yersinia pestis} SCOP: d.198.1.1
Probab=25.70 E-value=24 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred hhhhhhhccccCEEEEee--ecCCCeEEEEE
Q 032006 5 EDLMSKLFTDVDMIFIPV--NLGGDHWVLAL 33 (149)
Q Consensus 5 ~~~~~~~~~~~d~I~iPi--n~~~~HW~l~v 33 (149)
++++++|+.+-|. +-|+ -..++||+|-.
T Consensus 64 ~tLL~qNLFSqd~-~kP~~~ls~d~~~VLWs 93 (138)
T 1ttw_A 64 YDILRKNLFSPLS-GVIRCALDKDDHWLLWS 93 (138)
T ss_dssp HHHHHTCCCCSST-TCCEEEECTTSEEEEEE
T ss_pred HHHHHhcccccCc-CCceeeeCCCCCEeeee
Confidence 6788999998886 5566 33467999876
No 12
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=20.82 E-value=78 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=22.5
Q ss_pred EEEeeecCCCeEEEEEEEcCCCeEEEEcCCCC
Q 032006 18 IFIPVNLGGDHWVLALADLRARRMRIYDSLVT 49 (149)
Q Consensus 18 I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~ 49 (149)
.=+.+|. ..||+.+- .-.+..+-+||+-.
T Consensus 111 ~~FI~N~-~~HWfaiR--kigg~WyNLdS~l~ 139 (191)
T 3o65_A 111 RSFICNY-KQHWFTIR--KFGKHWFNLNSLLA 139 (191)
T ss_dssp CEEEEEE-SSCEEEEE--EETTEEEECCTTSS
T ss_pred hhhhhcc-ccceeeEE--ecCCEEEEccCCCC
Confidence 4566788 89999875 33578999999866
No 13
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=20.57 E-value=86 Score=21.45 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.7
Q ss_pred EEEEEcCCCeEEEEcCCCCC
Q 032006 31 LALADLRARRMRIYDSLVTF 50 (149)
Q Consensus 31 l~vvd~~~~~i~~~DSl~~~ 50 (149)
.+.||...+++++.||.++-
T Consensus 106 ~ILVDH~~ktmHViDs~Gs~ 125 (158)
T 3rnv_A 106 RMLVDHKTKIIHVVDSYGSL 125 (158)
T ss_dssp EEEEETTTTEEEEECCSSSC
T ss_pred cEEEcCCCCeEEeccCCCCC
Confidence 46789999999999999993
Done!