Query 032008
Match_columns 149
No_of_seqs 134 out of 1190
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 6.3E-31 1.4E-35 159.1 16.9 145 2-148 11-156 (160)
2 KOG0027 Calmodulin and related 100.0 2.5E-28 5.4E-33 150.2 16.6 143 5-148 2-149 (151)
3 PTZ00184 calmodulin; Provision 99.9 8E-26 1.7E-30 138.9 17.4 147 1-148 1-148 (149)
4 PTZ00183 centrin; Provisional 99.9 4E-25 8.7E-30 137.1 17.1 144 4-148 10-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 8.7E-25 1.9E-29 130.0 14.9 144 4-148 26-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 3.4E-24 7.5E-29 126.6 16.4 140 3-147 24-164 (171)
7 KOG0030 Myosin essential light 99.9 1.1E-22 2.3E-27 118.4 12.9 142 5-148 5-151 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 9.5E-21 2.1E-25 118.6 15.1 140 4-148 26-175 (187)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.9 1.5E-20 3.2E-25 117.8 14.6 141 5-147 23-174 (193)
10 KOG0037 Ca2+-binding protein, 99.8 1.8E-19 4E-24 112.8 15.0 133 9-147 55-187 (221)
11 KOG0036 Predicted mitochondria 99.8 9.2E-19 2E-23 118.6 14.7 136 6-147 9-145 (463)
12 KOG4223 Reticulocalbin, calume 99.7 6.1E-16 1.3E-20 102.2 9.2 136 10-145 162-302 (325)
13 KOG0027 Calmodulin and related 99.6 1.1E-14 2.3E-19 89.7 10.9 102 47-148 7-113 (151)
14 PLN02964 phosphatidylserine de 99.6 2.3E-14 5E-19 104.4 14.0 104 4-112 136-243 (644)
15 PF13499 EF-hand_7: EF-hand do 99.5 5.8E-14 1.3E-18 74.6 7.5 61 86-146 2-66 (66)
16 cd05022 S-100A13 S-100A13: S-1 99.5 5.1E-14 1.1E-18 78.4 6.9 65 84-148 8-75 (89)
17 PTZ00183 centrin; Provisional 99.5 5.7E-13 1.2E-17 82.5 11.9 101 48-148 17-118 (158)
18 KOG4223 Reticulocalbin, calume 99.5 2.2E-13 4.8E-18 90.3 10.1 138 8-146 74-226 (325)
19 COG5126 FRQ1 Ca2+-binding prot 99.5 7.4E-13 1.6E-17 80.8 11.7 100 48-148 20-120 (160)
20 KOG0377 Protein serine/threoni 99.5 8.2E-13 1.8E-17 91.1 12.7 135 11-147 464-614 (631)
21 KOG0044 Ca2+ sensor (EF-Hand s 99.5 1.4E-12 3.1E-17 82.1 12.5 120 26-148 7-128 (193)
22 PTZ00184 calmodulin; Provision 99.5 1.7E-12 3.7E-17 79.6 11.7 101 11-111 47-147 (149)
23 KOG0037 Ca2+-binding protein, 99.5 1.2E-11 2.5E-16 78.1 14.2 125 11-148 94-220 (221)
24 cd05027 S-100B S-100B: S-100B 99.4 1.1E-12 2.3E-17 73.2 7.8 65 84-148 8-79 (88)
25 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.8E-17 72.8 7.9 71 7-78 4-77 (89)
26 PF13499 EF-hand_7: EF-hand do 99.4 1.2E-12 2.7E-17 69.4 6.7 62 12-74 1-66 (66)
27 cd05027 S-100B S-100B: S-100B 99.4 7.2E-12 1.6E-16 69.9 8.8 70 7-77 4-80 (88)
28 KOG2562 Protein phosphatase 2 99.4 1.7E-11 3.7E-16 85.0 11.9 136 5-144 272-420 (493)
29 KOG0038 Ca2+-binding kinase in 99.4 7.4E-11 1.6E-15 70.0 12.4 139 5-148 22-177 (189)
30 PF13833 EF-hand_8: EF-hand do 99.4 5.3E-12 1.1E-16 64.2 6.7 52 97-148 1-53 (54)
31 cd05029 S-100A6 S-100A6: S-100 99.4 7E-12 1.5E-16 69.9 7.6 65 84-148 10-79 (88)
32 cd05031 S-100A10_like S-100A10 99.4 6.5E-12 1.4E-16 71.2 7.4 65 84-148 8-79 (94)
33 cd05026 S-100Z S-100Z: S-100Z 99.4 6.7E-12 1.4E-16 70.9 7.2 65 84-148 10-81 (93)
34 PLN02964 phosphatidylserine de 99.3 2.1E-11 4.6E-16 89.3 11.4 119 26-148 119-243 (644)
35 cd05025 S-100A1 S-100A1: S-100 99.3 1.1E-11 2.5E-16 69.9 7.7 65 84-148 9-80 (92)
36 smart00027 EH Eps15 homology d 99.3 2.4E-11 5.3E-16 69.1 8.4 71 4-77 3-73 (96)
37 cd05029 S-100A6 S-100A6: S-100 99.3 3.5E-11 7.6E-16 67.1 8.5 71 6-77 5-80 (88)
38 KOG0028 Ca2+-binding protein ( 99.3 9.9E-11 2.1E-15 70.5 10.8 102 11-112 69-170 (172)
39 cd00052 EH Eps15 homology doma 99.3 1.7E-11 3.6E-16 65.2 6.7 59 87-147 2-60 (67)
40 KOG0034 Ca2+/calmodulin-depend 99.3 1.1E-10 2.3E-15 73.6 10.4 99 14-113 69-176 (187)
41 smart00027 EH Eps15 homology d 99.3 2.9E-11 6.3E-16 68.8 7.3 62 84-147 10-71 (96)
42 cd05026 S-100Z S-100Z: S-100Z 99.3 8.1E-11 1.7E-15 66.5 8.6 73 6-78 5-83 (93)
43 cd00051 EFh EF-hand, calcium b 99.3 6.3E-11 1.4E-15 61.6 7.7 61 86-146 2-62 (63)
44 cd05025 S-100A1 S-100A1: S-100 99.3 1E-10 2.2E-15 66.0 8.6 71 7-77 5-81 (92)
45 cd00213 S-100 S-100: S-100 dom 99.3 4.3E-11 9.4E-16 67.0 7.1 65 84-148 8-79 (88)
46 cd00213 S-100 S-100: S-100 dom 99.3 8.7E-11 1.9E-15 65.8 8.1 71 7-77 4-80 (88)
47 cd05031 S-100A10_like S-100A10 99.2 1.6E-10 3.4E-15 65.5 8.4 69 8-76 5-79 (94)
48 cd05023 S-100A11 S-100A11: S-1 99.2 1.5E-10 3.2E-15 64.7 7.7 65 84-148 9-80 (89)
49 cd00252 SPARC_EC SPARC_EC; ext 99.2 1.1E-10 2.3E-15 68.3 7.3 61 83-147 47-107 (116)
50 KOG0040 Ca2+-binding actin-bun 99.2 7.1E-10 1.5E-14 86.2 12.6 134 4-146 2246-2396(2399)
51 PF14658 EF-hand_9: EF-hand do 99.1 4.2E-10 9E-15 58.3 6.7 61 88-148 2-64 (66)
52 cd00052 EH Eps15 homology doma 99.1 4.1E-10 9E-15 59.7 7.0 61 14-77 2-62 (67)
53 cd05023 S-100A11 S-100A11: S-1 99.1 1.1E-09 2.4E-14 61.2 8.8 72 6-77 4-81 (89)
54 PF13833 EF-hand_8: EF-hand do 99.1 3.7E-10 8.1E-15 57.3 6.2 52 24-76 1-53 (54)
55 cd00051 EFh EF-hand, calcium b 99.1 8.8E-10 1.9E-14 57.2 7.2 61 13-74 2-62 (63)
56 KOG2643 Ca2+ binding protein, 99.1 2.2E-09 4.7E-14 74.3 10.2 130 14-148 321-453 (489)
57 KOG0036 Predicted mitochondria 99.1 6.8E-09 1.5E-13 71.5 12.4 122 12-144 52-179 (463)
58 cd05030 calgranulins Calgranul 99.1 6.2E-10 1.4E-14 62.2 6.2 65 84-148 8-79 (88)
59 cd05030 calgranulins Calgranul 99.0 3.3E-09 7.1E-14 59.3 7.9 71 7-77 4-80 (88)
60 cd00252 SPARC_EC SPARC_EC; ext 99.0 6.7E-09 1.5E-13 60.7 8.0 62 46-111 46-107 (116)
61 KOG0041 Predicted Ca2+-binding 99.0 1.1E-08 2.4E-13 64.0 9.3 104 4-108 92-199 (244)
62 PF14658 EF-hand_9: EF-hand do 99.0 6.1E-09 1.3E-13 54.0 6.6 61 16-77 3-65 (66)
63 KOG4251 Calcium binding protei 98.9 8.7E-09 1.9E-13 66.6 6.9 137 9-145 99-261 (362)
64 cd05024 S-100A10 S-100A10: A s 98.9 5.8E-08 1.3E-12 53.9 8.9 71 7-78 4-78 (91)
65 KOG0030 Myosin essential light 98.9 1E-07 2.2E-12 56.4 10.2 103 46-148 9-116 (152)
66 KOG0751 Mitochondrial aspartat 98.8 3E-07 6.6E-12 65.1 12.4 101 11-113 33-137 (694)
67 KOG0041 Predicted Ca2+-binding 98.8 4.8E-08 1E-12 61.2 7.6 64 84-147 99-162 (244)
68 cd05024 S-100A10 S-100A10: A s 98.8 1.3E-07 2.7E-12 52.6 7.9 63 84-147 8-75 (91)
69 PF00036 EF-hand_1: EF hand; 98.8 2E-08 4.3E-13 44.0 3.7 26 122-147 2-27 (29)
70 KOG2643 Ca2+ binding protein, 98.7 2.2E-07 4.8E-12 64.7 9.8 130 12-146 234-382 (489)
71 PF00036 EF-hand_1: EF hand; 98.7 2.6E-08 5.6E-13 43.6 3.4 28 85-112 1-28 (29)
72 PF12763 EF-hand_4: Cytoskelet 98.7 8.1E-08 1.8E-12 55.1 6.3 70 4-77 3-72 (104)
73 PF12763 EF-hand_4: Cytoskelet 98.7 2E-07 4.4E-12 53.4 7.8 62 83-147 9-70 (104)
74 KOG4251 Calcium binding protei 98.7 1.6E-07 3.5E-12 60.8 7.5 130 15-144 144-341 (362)
75 KOG4666 Predicted phosphate ac 98.6 1.4E-07 3E-12 63.4 5.1 119 23-147 239-358 (412)
76 KOG0038 Ca2+-binding kinase in 98.6 1.1E-06 2.4E-11 52.6 8.1 99 15-113 75-178 (189)
77 PF13405 EF-hand_6: EF-hand do 98.5 1.8E-07 3.8E-12 41.7 3.5 29 86-114 2-31 (31)
78 PRK12309 transaldolase/EF-hand 98.5 1.3E-06 2.7E-11 61.5 9.2 52 83-147 333-384 (391)
79 KOG1029 Endocytic adaptor prot 98.4 7.8E-06 1.7E-10 61.0 11.8 136 5-146 10-255 (1118)
80 KOG0169 Phosphoinositide-speci 98.4 1.4E-05 3E-10 59.5 12.7 136 8-148 133-274 (746)
81 KOG1707 Predicted Ras related/ 98.4 3.2E-06 7E-11 61.2 8.8 146 2-147 186-342 (625)
82 PF10591 SPARC_Ca_bdg: Secrete 98.4 1.5E-06 3.2E-11 50.8 6.0 66 78-145 48-113 (113)
83 PF14788 EF-hand_10: EF hand; 98.4 2E-06 4.4E-11 42.2 5.5 49 27-76 1-49 (51)
84 PF14788 EF-hand_10: EF hand; 98.4 2.5E-06 5.4E-11 41.9 5.7 48 101-148 2-49 (51)
85 KOG0031 Myosin regulatory ligh 98.4 2.9E-05 6.2E-10 47.0 10.8 89 23-111 76-164 (171)
86 PF13405 EF-hand_6: EF-hand do 98.3 8.7E-07 1.9E-11 39.4 3.3 29 12-40 1-30 (31)
87 PRK12309 transaldolase/EF-hand 98.3 3.9E-06 8.5E-11 59.0 7.8 60 40-112 326-385 (391)
88 KOG2562 Protein phosphatase 2 98.3 3.1E-06 6.8E-11 59.5 6.8 131 12-146 226-377 (493)
89 KOG0046 Ca2+-binding actin-bun 98.3 5.8E-06 1.3E-10 59.1 7.7 75 3-79 11-88 (627)
90 PF13202 EF-hand_5: EF hand; P 98.3 1.6E-06 3.5E-11 36.5 2.9 20 89-108 4-23 (25)
91 PF13202 EF-hand_5: EF hand; P 98.2 2.5E-06 5.5E-11 35.9 3.4 25 122-146 1-25 (25)
92 KOG0377 Protein serine/threoni 98.2 9.4E-06 2E-10 57.1 7.4 68 46-113 545-616 (631)
93 KOG0040 Ca2+-binding actin-bun 98.2 5.8E-06 1.3E-10 65.5 6.5 65 84-148 2253-2324(2399)
94 KOG0751 Mitochondrial aspartat 98.1 1.9E-05 4E-10 56.4 7.2 58 85-142 180-238 (694)
95 KOG4666 Predicted phosphate ac 97.9 6.4E-05 1.4E-09 51.0 6.2 102 11-113 259-360 (412)
96 PF09279 EF-hand_like: Phospho 97.9 7.5E-05 1.6E-09 41.2 5.5 63 85-148 1-69 (83)
97 PF05042 Caleosin: Caleosin re 97.6 0.0011 2.5E-08 41.2 8.5 135 10-146 6-164 (174)
98 PF10591 SPARC_Ca_bdg: Secrete 97.6 2.3E-05 5.1E-10 45.8 0.9 65 42-108 48-112 (113)
99 KOG0046 Ca2+-binding actin-bun 97.6 0.00038 8.3E-09 50.2 6.9 63 84-147 19-84 (627)
100 smart00054 EFh EF-hand, calciu 97.5 0.00019 4.2E-09 30.3 3.2 26 122-147 2-27 (29)
101 PF09279 EF-hand_like: Phospho 97.5 0.00052 1.1E-08 37.8 5.5 66 12-78 1-71 (83)
102 KOG4065 Uncharacterized conser 97.4 0.0011 2.5E-08 38.2 6.3 58 88-145 71-142 (144)
103 KOG1955 Ral-GTPase effector RA 97.4 0.00062 1.3E-08 48.9 5.7 62 84-147 231-292 (737)
104 KOG3555 Ca2+-binding proteogly 97.3 0.00035 7.6E-09 47.9 4.0 65 79-147 245-309 (434)
105 smart00054 EFh EF-hand, calciu 97.3 0.00039 8.5E-09 29.3 2.8 27 86-112 2-28 (29)
106 KOG0035 Ca2+-binding actin-bun 96.9 0.029 6.2E-07 43.7 11.0 104 3-108 739-848 (890)
107 KOG0998 Synaptic vesicle prote 96.8 0.0016 3.6E-08 50.6 4.2 135 5-145 123-342 (847)
108 PLN02952 phosphoinositide phos 96.7 0.033 7.2E-07 41.8 9.8 85 62-147 14-109 (599)
109 KOG0169 Phosphoinositide-speci 96.6 0.031 6.8E-07 42.5 8.8 96 48-147 136-231 (746)
110 KOG1955 Ral-GTPase effector RA 96.6 0.012 2.6E-07 42.7 6.4 71 5-78 225-295 (737)
111 KOG1265 Phospholipase C [Lipid 96.5 0.28 6E-06 38.6 13.3 121 21-148 158-299 (1189)
112 KOG0042 Glycerol-3-phosphate d 96.5 0.011 2.3E-07 43.6 5.8 77 5-82 587-663 (680)
113 KOG4347 GTPase-activating prot 96.4 0.029 6.3E-07 41.9 7.7 76 30-106 537-612 (671)
114 PF05042 Caleosin: Caleosin re 96.0 0.045 9.7E-07 34.3 6.0 32 116-147 92-123 (174)
115 KOG0998 Synaptic vesicle prote 95.7 0.013 2.9E-07 45.8 3.7 137 4-146 4-188 (847)
116 PF09069 EF-hand_3: EF-hand; 95.7 0.17 3.7E-06 28.3 7.4 61 84-147 3-74 (90)
117 KOG1029 Endocytic adaptor prot 95.5 0.035 7.6E-07 42.5 5.1 66 6-74 190-255 (1118)
118 KOG4347 GTPase-activating prot 95.5 0.032 7E-07 41.7 4.8 76 65-141 535-611 (671)
119 PF05517 p25-alpha: p25-alpha 95.5 0.17 3.6E-06 31.4 7.2 64 14-77 2-70 (154)
120 KOG3555 Ca2+-binding proteogly 95.4 0.054 1.2E-06 37.6 5.2 109 11-125 211-322 (434)
121 KOG2243 Ca2+ release channel ( 95.3 0.039 8.5E-07 45.2 5.0 58 88-146 4061-4118(5019)
122 KOG4065 Uncharacterized conser 95.3 0.11 2.4E-06 30.3 5.5 26 15-40 71-96 (144)
123 KOG0042 Glycerol-3-phosphate d 95.2 0.05 1.1E-06 40.3 4.9 62 86-147 595-656 (680)
124 PF05517 p25-alpha: p25-alpha 95.2 0.25 5.5E-06 30.6 7.4 54 94-147 12-68 (154)
125 KOG4578 Uncharacterized conser 95.0 0.024 5.2E-07 39.0 2.7 63 50-112 335-398 (421)
126 KOG4578 Uncharacterized conser 94.7 0.036 7.8E-07 38.2 2.9 63 85-147 334-397 (421)
127 KOG3866 DNA-binding protein of 93.9 0.18 3.8E-06 34.7 4.8 59 87-145 247-321 (442)
128 KOG0035 Ca2+-binding actin-bun 93.6 0.31 6.8E-06 38.3 6.1 65 84-148 747-816 (890)
129 PLN02952 phosphoinositide phos 93.5 1.4 2.9E-05 33.6 9.2 88 24-112 13-110 (599)
130 KOG1707 Predicted Ras related/ 92.5 0.39 8.5E-06 36.0 5.2 71 5-79 309-380 (625)
131 KOG1264 Phospholipase C [Lipid 92.3 1.4 3E-05 34.8 7.9 141 5-147 137-292 (1267)
132 PF14513 DAG_kinase_N: Diacylg 91.9 1 2.2E-05 27.4 5.7 69 26-97 6-82 (138)
133 PF08414 NADPH_Ox: Respiratory 91.7 1.5 3.2E-05 24.9 5.8 59 10-74 29-90 (100)
134 PF08726 EFhand_Ca_insen: Ca2+ 91.5 0.24 5.2E-06 26.2 2.4 56 82-145 4-66 (69)
135 KOG3866 DNA-binding protein of 91.4 0.45 9.7E-06 32.9 4.1 67 16-82 249-330 (442)
136 PLN02228 Phosphoinositide phos 91.3 1.8 3.9E-05 32.8 7.5 30 46-77 22-51 (567)
137 PLN02222 phosphoinositide phos 90.6 1.8 3.9E-05 32.9 7.0 61 84-146 25-88 (581)
138 PF07308 DUF1456: Protein of u 90.5 1.4 3.1E-05 23.3 4.7 46 101-146 14-59 (68)
139 KOG2243 Ca2+ release channel ( 89.4 0.86 1.9E-05 38.2 4.7 57 16-74 4062-4118(5019)
140 PLN02230 phosphoinositide phos 89.3 3 6.6E-05 31.8 7.3 63 84-147 29-101 (598)
141 PF14513 DAG_kinase_N: Diacylg 88.8 0.62 1.4E-05 28.3 2.9 51 97-149 4-61 (138)
142 PF08976 DUF1880: Domain of un 88.2 0.71 1.5E-05 27.0 2.8 31 45-75 4-34 (118)
143 KOG2871 Uncharacterized conser 86.9 0.88 1.9E-05 32.3 3.1 59 84-142 309-368 (449)
144 PF09069 EF-hand_3: EF-hand; 86.5 4.1 8.9E-05 22.9 7.8 63 11-76 3-75 (90)
145 KOG3449 60S acidic ribosomal p 86.3 4.7 0.0001 23.4 6.3 45 86-130 3-47 (112)
146 cd07313 terB_like_2 tellurium 85.0 5.2 0.00011 22.7 6.0 81 25-107 13-95 (104)
147 TIGR01848 PHA_reg_PhaR polyhyd 84.6 4.9 0.00011 23.2 4.9 64 57-130 12-79 (107)
148 KOG0039 Ferric reductase, NADH 83.9 3.7 8.1E-05 31.8 5.5 23 89-111 66-88 (646)
149 PLN02228 Phosphoinositide phos 83.6 10 0.00022 29.0 7.4 64 12-77 25-93 (567)
150 PF12174 RST: RCD1-SRO-TAF4 (R 83.4 1.3 2.9E-05 23.5 2.2 48 63-113 7-54 (70)
151 PLN02222 phosphoinositide phos 82.6 9.6 0.00021 29.2 7.0 64 12-77 26-91 (581)
152 PF01023 S_100: S-100/ICaBP ty 82.3 4.1 8.8E-05 19.4 4.3 33 8-40 3-37 (44)
153 KOG4286 Dystrophin-like protei 82.2 12 0.00027 29.5 7.4 130 13-146 422-578 (966)
154 PF02761 Cbl_N2: CBL proto-onc 81.7 6.9 0.00015 21.7 6.2 48 64-111 22-69 (85)
155 PF11116 DUF2624: Protein of u 80.1 8.1 0.00017 21.4 7.4 53 26-79 13-65 (85)
156 PLN02230 phosphoinositide phos 80.0 16 0.00034 28.2 7.4 64 11-76 29-102 (598)
157 PF11116 DUF2624: Protein of u 79.8 8.3 0.00018 21.4 6.0 31 100-130 14-44 (85)
158 TIGR03573 WbuX N-acetyl sugar 79.2 7.1 0.00015 27.7 5.2 43 98-146 300-342 (343)
159 PTZ00373 60S Acidic ribosomal 79.1 11 0.00023 22.2 6.3 44 87-130 6-49 (112)
160 PF13608 Potyvirid-P3: Protein 78.3 7.8 0.00017 28.7 5.3 96 8-117 286-386 (445)
161 PF12174 RST: RCD1-SRO-TAF4 (R 77.9 2.8 6E-05 22.3 2.2 51 25-79 6-56 (70)
162 KOG2871 Uncharacterized conser 77.8 2.9 6.3E-05 29.8 2.9 61 11-72 309-370 (449)
163 PF02761 Cbl_N2: CBL proto-onc 77.5 10 0.00022 21.1 6.4 43 100-142 22-64 (85)
164 PLN02223 phosphoinositide phos 77.0 16 0.00036 27.7 6.6 65 83-148 15-92 (537)
165 KOG1265 Phospholipase C [Lipid 76.8 40 0.00086 27.6 9.3 80 29-112 206-299 (1189)
166 PF07308 DUF1456: Protein of u 75.1 10 0.00022 20.0 5.5 46 28-74 14-59 (68)
167 PF05099 TerB: Tellurite resis 74.7 3.1 6.6E-05 25.0 2.2 80 24-105 36-117 (140)
168 KOG4403 Cell surface glycoprot 74.4 5.6 0.00012 29.0 3.6 30 49-78 69-98 (575)
169 TIGR02787 codY_Gpos GTP-sensin 74.2 11 0.00023 25.5 4.6 50 3-59 175-224 (251)
170 KOG4070 Putative signal transd 73.2 8.1 0.00018 23.9 3.6 84 11-94 12-108 (180)
171 PF07879 PHB_acc_N: PHB/PHA ac 72.6 11 0.00024 19.6 3.5 22 91-112 10-31 (64)
172 cd05833 Ribosomal_P2 Ribosomal 72.6 17 0.00036 21.3 6.2 43 88-130 5-47 (109)
173 PF03979 Sigma70_r1_1: Sigma-7 72.5 4.3 9.4E-05 22.2 2.2 35 24-61 18-52 (82)
174 PF09068 EF-hand_2: EF hand; 72.2 19 0.0004 21.7 6.5 64 84-147 41-124 (127)
175 KOG2301 Voltage-gated Ca2+ cha 72.0 2.9 6.3E-05 35.7 2.0 71 4-75 1410-1483(1592)
176 cd07313 terB_like_2 tellurium 71.5 10 0.00022 21.4 3.8 79 61-141 12-93 (104)
177 PF00404 Dockerin_1: Dockerin 71.5 5.9 0.00013 15.6 2.4 11 96-106 3-13 (21)
178 KOG4301 Beta-dystrobrevin [Cyt 71.0 28 0.0006 24.9 6.1 62 51-113 113-174 (434)
179 KOG4004 Matricellular protein 70.4 1.9 4.1E-05 27.9 0.6 54 90-145 193-247 (259)
180 PF10437 Lip_prot_lig_C: Bacte 69.3 15 0.00032 20.1 4.0 44 101-146 42-86 (86)
181 PF08461 HTH_12: Ribonuclease 68.7 11 0.00023 19.7 3.1 37 97-133 10-46 (66)
182 KOG4403 Cell surface glycoprot 68.7 11 0.00023 27.7 4.0 28 84-111 68-95 (575)
183 TIGR01639 P_fal_TIGR01639 Plas 68.3 15 0.00032 18.9 3.9 32 99-130 8-39 (61)
184 PF01885 PTS_2-RNA: RNA 2'-pho 67.3 15 0.00032 23.7 4.1 38 94-131 26-63 (186)
185 PF13623 SurA_N_2: SurA N-term 66.9 27 0.00059 21.5 6.9 78 62-146 46-145 (145)
186 KOG1785 Tyrosine kinase negati 64.1 55 0.0012 24.0 6.7 85 25-113 188-275 (563)
187 KOG1954 Endocytosis/signaling 62.0 21 0.00045 26.1 4.3 56 85-143 445-500 (532)
188 PRK00819 RNA 2'-phosphotransfe 61.8 29 0.00062 22.3 4.6 35 96-130 29-63 (179)
189 PF09068 EF-hand_2: EF hand; 61.4 33 0.00072 20.6 6.9 28 85-112 98-125 (127)
190 PF13551 HTH_29: Winged helix- 60.7 29 0.00062 19.6 6.2 51 5-55 58-109 (112)
191 KOG3449 60S acidic ribosomal p 60.5 32 0.00069 20.1 6.3 56 14-75 4-59 (112)
192 PLN00138 large subunit ribosom 60.2 33 0.00072 20.2 5.1 42 89-130 6-47 (113)
193 KOG3077 Uncharacterized conser 59.1 56 0.0012 22.4 11.1 66 10-76 63-129 (260)
194 PLN02223 phosphoinositide phos 57.6 79 0.0017 24.3 6.8 64 12-76 17-92 (537)
195 PF12419 DUF3670: SNF2 Helicas 57.3 26 0.00056 21.4 3.8 49 97-145 80-138 (141)
196 TIGR00624 tag DNA-3-methyladen 57.1 29 0.00063 22.3 4.0 104 9-115 51-168 (179)
197 COG4103 Uncharacterized protei 56.4 45 0.00098 20.6 6.5 92 15-112 34-129 (148)
198 PF15144 DUF4576: Domain of un 56.1 5.6 0.00012 21.5 0.7 42 96-138 36-77 (88)
199 KOG1785 Tyrosine kinase negati 55.6 81 0.0018 23.2 8.5 58 84-142 175-232 (563)
200 PF09336 Vps4_C: Vps4 C termin 54.1 28 0.0006 17.9 3.1 25 100-124 29-53 (62)
201 PF06163 DUF977: Bacterial pro 53.3 38 0.00083 20.4 3.8 50 1-57 1-50 (127)
202 cd04411 Ribosomal_P1_P2_L12p R 53.2 43 0.00094 19.4 6.7 30 101-130 17-46 (105)
203 PF09373 PMBR: Pseudomurein-bi 53.2 16 0.00035 16.1 1.8 14 134-147 2-15 (33)
204 COG4465 CodY Pleiotropic trans 53.2 38 0.00082 22.6 4.1 48 3-57 181-228 (261)
205 PF06648 DUF1160: Protein of u 53.2 47 0.001 19.9 4.2 43 33-78 39-81 (122)
206 PF07499 RuvA_C: RuvA, C-termi 53.1 26 0.00056 16.8 4.8 39 103-145 3-41 (47)
207 cd07316 terB_like_DjlA N-termi 53.1 40 0.00087 19.0 7.1 81 25-107 13-96 (106)
208 PRK09430 djlA Dna-J like membr 53.0 73 0.0016 21.9 9.9 101 24-128 68-174 (267)
209 PF03672 UPF0154: Uncharacteri 51.4 35 0.00076 17.8 3.7 32 25-57 29-60 (64)
210 TIGR03573 WbuX N-acetyl sugar 51.0 53 0.0012 23.4 5.0 57 42-110 286-342 (343)
211 PF07862 Nif11: Nitrogen fixat 50.0 30 0.00065 16.6 2.8 21 102-122 28-48 (49)
212 COG2818 Tag 3-methyladenine DN 50.0 13 0.00028 24.0 1.6 33 84-116 55-87 (188)
213 KOG4301 Beta-dystrobrevin [Cyt 48.6 31 0.00068 24.6 3.4 61 86-147 112-172 (434)
214 PRK04158 transcriptional repre 48.0 23 0.00049 24.1 2.6 48 3-57 178-225 (256)
215 COG4103 Uncharacterized protei 47.6 66 0.0014 19.9 6.5 57 88-146 34-92 (148)
216 PF14473 RD3: RD3 protein 47.3 50 0.0011 20.1 3.7 50 4-57 71-120 (133)
217 KOG2557 Uncharacterized conser 47.0 1.1E+02 0.0024 22.3 5.8 52 62-113 72-123 (427)
218 KOG0506 Glutaminase (contains 47.0 88 0.0019 23.7 5.5 61 87-147 89-157 (622)
219 PRK04387 hypothetical protein; 46.9 52 0.0011 18.5 3.8 52 6-57 12-63 (90)
220 PF12486 DUF3702: ImpA domain 46.7 51 0.0011 20.5 3.8 32 9-40 67-98 (148)
221 PF11269 DUF3069: Protein of u 46.4 19 0.00041 21.3 1.8 104 33-146 11-120 (121)
222 PF05383 La: La domain; Inter 45.9 18 0.0004 18.5 1.6 19 17-35 21-39 (61)
223 PRK06253 O-phosphoseryl-tRNA s 45.6 1.4E+02 0.003 23.0 8.2 78 3-81 81-159 (529)
224 PF03556 Cullin_binding: Culli 45.4 63 0.0014 19.1 4.0 79 62-146 38-116 (117)
225 PRK00523 hypothetical protein; 44.9 50 0.0011 17.7 3.8 32 25-57 37-68 (72)
226 TIGR02878 spore_ypjB sporulati 44.4 97 0.0021 20.9 5.0 51 5-61 145-195 (233)
227 PF08356 EF_assoc_2: EF hand a 44.3 58 0.0013 18.3 5.4 40 62-101 26-65 (89)
228 KOG0506 Glutaminase (contains 44.1 1.2E+02 0.0027 23.0 5.9 59 15-74 90-156 (622)
229 PF11020 DUF2610: Domain of un 44.1 55 0.0012 17.9 3.5 48 27-74 28-75 (82)
230 PF12983 DUF3867: Protein of u 42.6 90 0.002 20.0 6.1 53 61-133 33-89 (186)
231 KOG1954 Endocytosis/signaling 42.5 64 0.0014 23.7 4.2 24 84-107 477-500 (532)
232 PF05256 UPF0223: Uncharacteri 42.2 42 0.00091 18.8 2.7 52 6-57 12-63 (88)
233 PF11363 DUF3164: Protein of u 42.1 98 0.0021 20.2 5.8 53 75-130 110-162 (195)
234 COG4476 Uncharacterized protei 42.1 62 0.0013 17.9 3.2 51 7-57 13-63 (90)
235 PF07128 DUF1380: Protein of u 41.8 59 0.0013 20.0 3.5 31 101-131 27-57 (139)
236 KOG4286 Dystrophin-like protei 40.4 1.2E+02 0.0026 24.5 5.6 92 16-111 475-579 (966)
237 PRK00819 RNA 2'-phosphotransfe 40.2 96 0.0021 20.0 4.5 34 22-56 28-61 (179)
238 KOG0039 Ferric reductase, NADH 39.8 1E+02 0.0022 24.3 5.4 77 65-147 4-88 (646)
239 PRK06402 rpl12p 50S ribosomal 39.6 78 0.0017 18.4 6.3 31 100-130 16-46 (106)
240 TIGR00470 sepS O-phosphoseryl- 39.4 1.7E+02 0.0038 22.4 7.9 78 3-82 81-159 (533)
241 PF04769 MAT_Alpha1: Mating-ty 38.5 99 0.0022 20.3 4.4 43 60-102 101-144 (201)
242 PF05240 APOBEC_C: APOBEC-like 38.2 28 0.00062 17.5 1.5 14 136-149 20-33 (55)
243 TIGR03798 ocin_TIGR03798 bacte 38.1 60 0.0013 16.7 3.4 25 101-125 25-49 (64)
244 PF08672 APC2: Anaphase promot 38.0 60 0.0013 16.6 4.4 31 81-112 12-44 (60)
245 cd00086 homeodomain Homeodomai 38.0 53 0.0011 15.9 4.9 45 4-56 6-50 (59)
246 PF01316 Arg_repressor: Argini 37.9 66 0.0014 17.1 3.9 31 100-130 19-49 (70)
247 cd08032 LARP_7 La RNA-binding 37.6 72 0.0016 17.6 3.2 18 18-35 30-47 (82)
248 COG5069 SAC6 Ca2+-binding acti 37.1 1.3E+02 0.0029 22.8 5.2 87 4-94 478-564 (612)
249 PF09312 SurA_N: SurA N-termin 37.0 49 0.0011 19.4 2.7 13 26-38 11-23 (118)
250 PF08349 DUF1722: Protein of u 36.8 90 0.0019 18.3 4.6 31 116-146 65-95 (117)
251 cd08033 LARP_6 La RNA-binding 36.5 75 0.0016 17.3 3.1 36 18-54 25-60 (77)
252 PRK09430 djlA Dna-J like membr 36.1 1.2E+02 0.0026 20.8 4.8 77 61-141 68-150 (267)
253 PF00690 Cation_ATPase_N: Cati 35.9 67 0.0014 16.6 3.4 29 87-115 7-35 (69)
254 COG2058 RPP1A Ribosomal protei 35.8 93 0.002 18.2 5.9 31 100-130 16-46 (109)
255 COG2344 AT-rich DNA-binding pr 35.0 1.2E+02 0.0026 20.0 4.2 68 5-78 7-79 (211)
256 PF10897 DUF2713: Protein of u 34.9 98 0.0021 20.3 3.8 41 61-101 174-226 (246)
257 PLN02508 magnesium-protoporphy 34.6 1.6E+02 0.0034 21.2 5.0 21 91-111 86-106 (357)
258 PF10208 Armet: Degradation ar 33.9 1E+02 0.0022 19.3 3.7 33 116-148 106-138 (154)
259 PF09107 SelB-wing_3: Elongati 33.4 59 0.0013 15.9 2.2 30 25-60 8-37 (50)
260 PF12767 SAGA-Tad1: Transcript 33.3 1.3E+02 0.0029 20.3 4.6 17 62-78 39-55 (252)
261 PF02337 Gag_p10: Retroviral G 33.2 86 0.0019 17.7 3.1 11 132-142 69-79 (90)
262 PF08429 PLU-1: PLU-1-like pro 33.1 1.8E+02 0.0038 20.6 6.6 31 26-56 81-111 (335)
263 PF11848 DUF3368: Domain of un 33.1 64 0.0014 15.5 4.0 32 98-129 15-47 (48)
264 PF06384 ICAT: Beta-catenin-in 32.7 78 0.0017 17.3 2.7 21 105-125 21-41 (78)
265 PF08044 DUF1707: Domain of un 32.4 72 0.0016 15.9 3.3 31 24-55 20-50 (53)
266 PRK01844 hypothetical protein; 32.2 88 0.0019 16.8 3.7 31 26-57 37-67 (72)
267 KOG2419 Phosphatidylserine dec 31.8 30 0.00066 27.1 1.5 61 14-75 440-532 (975)
268 PF08671 SinI: Anti-repressor 31.8 54 0.0012 14.2 1.7 11 101-111 17-27 (30)
269 COG2818 Tag 3-methyladenine DN 31.1 1.5E+02 0.0033 19.3 7.1 46 9-55 53-98 (188)
270 PF03250 Tropomodulin: Tropomo 30.7 63 0.0014 20.0 2.4 22 3-24 22-43 (147)
271 COG3763 Uncharacterized protei 29.9 96 0.0021 16.5 3.8 31 99-129 37-67 (71)
272 PF10815 ComZ: ComZ; InterPro 29.8 83 0.0018 15.8 3.5 25 105-129 16-40 (56)
273 KOG2301 Voltage-gated Ca2+ cha 29.8 61 0.0013 28.5 3.0 34 81-114 1414-1447(1592)
274 PF07492 Trehalase_Ca-bi: Neut 28.9 16 0.00035 15.8 -0.2 16 125-140 4-19 (30)
275 COG5394 Uncharacterized protei 28.8 1.6E+02 0.0035 18.7 4.5 15 60-74 24-38 (193)
276 PRK14981 DNA-directed RNA poly 28.3 1.3E+02 0.0028 17.6 3.9 9 117-125 95-103 (112)
277 KOG3077 Uncharacterized conser 28.0 2.1E+02 0.0045 19.8 6.6 51 94-144 75-125 (260)
278 cd07176 terB tellurite resista 27.8 1.2E+02 0.0026 17.0 4.0 79 25-106 16-99 (111)
279 COG5562 Phage envelope protein 27.7 49 0.0011 20.2 1.6 18 129-146 81-98 (137)
280 PF09494 Slx4: Slx4 endonuclea 27.6 98 0.0021 15.9 3.6 15 101-115 25-39 (64)
281 PRK10353 3-methyl-adenine DNA 27.5 29 0.00062 22.5 0.7 32 84-115 54-85 (187)
282 PF13331 DUF4093: Domain of un 27.2 1.2E+02 0.0026 16.9 6.5 56 64-126 30-86 (87)
283 TIGR01529 argR_whole arginine 27.1 1.6E+02 0.0034 18.2 4.2 35 97-131 13-47 (146)
284 PF08002 DUF1697: Protein of u 26.8 59 0.0013 19.8 1.9 26 90-115 8-33 (137)
285 KOG2419 Phosphatidylserine dec 26.6 42 0.00092 26.3 1.5 61 87-147 440-532 (975)
286 PF08963 DUF1878: Protein of u 26.5 1.5E+02 0.0032 17.6 3.6 18 4-21 37-54 (113)
287 TIGR01565 homeo_ZF_HD homeobox 26.5 1E+02 0.0022 15.7 4.1 34 4-43 7-44 (58)
288 cd05831 Ribosomal_P1 Ribosomal 26.3 1.4E+02 0.003 17.2 5.3 32 99-130 16-47 (103)
289 cd08028 LARP_3 La RNA-binding 26.1 1.2E+02 0.0025 16.8 2.8 11 25-35 35-45 (82)
290 PF10281 Ish1: Putative stress 25.9 79 0.0017 14.2 3.8 16 101-116 4-19 (38)
291 PF13624 SurA_N_3: SurA N-term 25.7 1.3E+02 0.0029 18.2 3.4 42 106-147 89-131 (154)
292 TIGR02613 mob_myst_B mobile my 25.0 1.4E+02 0.0031 19.2 3.5 18 23-40 127-144 (186)
293 COG4359 Uncharacterized conser 24.9 2.1E+02 0.0046 18.8 6.4 79 24-113 10-88 (220)
294 PTZ00373 60S Acidic ribosomal 24.8 1.6E+02 0.0034 17.4 6.3 52 15-72 7-58 (112)
295 cd03035 ArsC_Yffb Arsenate Red 24.6 80 0.0017 18.1 2.1 13 101-113 36-48 (105)
296 COG1460 Uncharacterized protei 24.5 1.6E+02 0.0035 17.4 3.5 29 101-129 80-108 (114)
297 TIGR02574 stabl_TIGR02574 puta 24.5 1.1E+02 0.0025 15.6 4.0 20 5-24 3-23 (63)
298 PF11422 IBP39: Initiator bind 24.4 2.1E+02 0.0045 18.5 6.4 20 96-115 71-90 (181)
299 TIGR00135 gatC glutamyl-tRNA(G 24.3 1.4E+02 0.003 16.6 4.0 25 101-125 1-25 (93)
300 COG1438 ArgR Arginine represso 24.1 1.4E+02 0.003 18.7 3.1 32 99-130 19-50 (150)
301 COG1859 KptA RNA:NAD 2'-phosph 24.0 2.2E+02 0.0048 19.0 4.1 62 60-130 28-89 (211)
302 PF04558 tRNA_synt_1c_R1: Glut 23.9 1.6E+02 0.0036 18.6 3.5 45 84-129 85-129 (164)
303 PRK10945 gene expression modul 23.7 1.3E+02 0.0029 16.1 3.6 27 84-114 22-48 (72)
304 smart00549 TAFH TAF homology. 23.7 1.3E+02 0.0028 17.1 2.6 15 98-112 37-51 (92)
305 PF12238 MSA-2c: Merozoite sur 23.3 2.3E+02 0.0051 18.8 7.3 105 5-114 7-115 (205)
306 PF09577 Spore_YpjB: Sporulati 23.3 2.5E+02 0.0054 19.1 4.7 50 5-60 144-193 (232)
307 COG4962 CpaF Flp pilus assembl 23.2 1.2E+02 0.0026 22.0 3.0 41 60-100 230-276 (355)
308 COG1937 Uncharacterized protei 22.9 82 0.0018 17.7 1.8 64 86-149 22-88 (89)
309 PF11829 DUF3349: Protein of u 22.8 1.6E+02 0.0035 16.8 5.5 65 65-129 20-85 (96)
310 PF10891 DUF2719: Protein of u 22.8 62 0.0013 17.6 1.3 13 134-146 33-45 (81)
311 PF06971 Put_DNA-bind_N: Putat 22.7 1.1E+02 0.0025 15.0 3.0 33 5-37 3-38 (50)
312 PF09851 SHOCT: Short C-termin 22.5 86 0.0019 13.5 3.9 15 25-39 14-28 (31)
313 KOG4718 Non-SMC (structural ma 22.4 2.5E+02 0.0053 18.9 4.1 58 1-58 89-147 (235)
314 KOG0820 Ribosomal RNA adenine 22.0 1.5E+02 0.0032 20.9 3.2 28 122-149 278-307 (315)
315 cd08315 Death_TRAILR_DR4_DR5 D 22.0 1.7E+02 0.0036 16.6 8.0 43 84-126 48-90 (96)
316 PRK14074 rpsF 30S ribosomal pr 21.9 2.6E+02 0.0057 19.1 4.2 69 5-77 14-82 (257)
317 PF03352 Adenine_glyco: Methyl 21.7 25 0.00055 22.5 -0.4 42 84-125 49-90 (179)
318 TIGR03581 EF_0839 conserved hy 21.7 2.7E+02 0.0058 18.8 6.8 89 24-112 131-233 (236)
319 PRK04280 arginine repressor; P 21.7 1.9E+02 0.0042 17.9 3.5 31 100-130 18-48 (148)
320 smart00513 SAP Putative DNA-bi 21.6 94 0.002 13.6 2.5 17 100-116 3-19 (35)
321 PF10841 DUF2644: Protein of u 21.6 1.2E+02 0.0026 15.6 2.1 20 59-78 5-24 (60)
322 PRK09389 (R)-citramalate synth 21.5 2.6E+02 0.0057 21.3 4.7 43 105-147 322-366 (488)
323 cd06403 PB1_Par6 The PB1 domai 21.3 33 0.00071 18.8 0.1 21 90-110 11-31 (80)
324 PRK10391 oriC-binding nucleoid 21.2 1.5E+02 0.0033 15.8 2.9 10 84-93 17-26 (71)
325 COG0292 RplT Ribosomal protein 20.9 1.9E+02 0.0042 17.1 3.1 26 100-125 73-98 (118)
326 PF02037 SAP: SAP domain; Int 20.4 1E+02 0.0022 13.6 2.2 16 101-116 4-19 (35)
327 PF08411 Exonuc_X-T_C: Exonucl 20.4 1.9E+02 0.004 20.0 3.5 37 3-40 207-245 (269)
328 PRK03341 arginine repressor; P 20.2 2.5E+02 0.0054 17.9 3.8 42 87-130 18-59 (168)
329 TIGR02675 tape_meas_nterm tape 20.2 1.6E+02 0.0035 15.7 4.0 32 6-39 11-42 (75)
330 PTZ00315 2'-phosphotransferase 20.1 2.8E+02 0.006 21.8 4.6 38 94-131 399-436 (582)
331 PHA03155 hypothetical protein; 20.0 2.1E+02 0.0045 17.0 5.2 86 27-115 7-92 (115)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=6.3e-31 Score=159.06 Aligned_cols=145 Identities=48% Similarity=0.842 Sum_probs=136.9
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc-
Q 032008 2 ADALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE- 80 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~- 80 (149)
..+|+++++++++++|..+|++++|.|++++|..+++.+ |.+++..++.+++..++. +.+.|++.+|+.++......
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL-GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 356899999999999999999999999999999999988 999999999999999999 89999999999999988854
Q ss_pred CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 81 NVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
...+++..+|+.||.+++|+|+..+++.++..+|..+++++++.++..++.+++|.|+|++|++.+..
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 44699999999999999999999999999999999999999999999999999999999999997753
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-28 Score=150.15 Aligned_cols=143 Identities=55% Similarity=0.943 Sum_probs=134.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCc--
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENV-- 82 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~-- 82 (149)
++..++..+..+|..+|.+++|.|+..++..+++.+ +..++..++..++..+|.+++|.|++.+|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 567889999999999999999999999999999999 99999999999999999999999999999999987665433
Q ss_pred ---HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 83 ---SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 83 ---~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.+.+..+|+.+|.+++|+||..|++.++..+|.+.+.+++..+++.+|.|++|.|+|++|+.++..
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 358999999999999999999999999999999999999999999999999999999999998864
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.95 E-value=8e-26 Score=138.94 Aligned_cols=147 Identities=66% Similarity=1.050 Sum_probs=134.5
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc
Q 032008 1 MADALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE 80 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 80 (149)
|+.++++.+++.+...|..+|.+++|.|+.++|..++... +..++.+.+..++..++.+++|.|++++|+..+......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 79 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD 79 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC
Confidence 5678999999999999999999999999999999999888 888888999999999999999999999999988765443
Q ss_pred -CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 81 -NVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 81 -~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
...+.+..+|+.+|.+++|.|+.+++..++..+|..++.+++..++..+|.+++|.|+++||+.++..
T Consensus 80 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 80 TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 33467899999999999999999999999999999999999999999999999999999999998753
No 4
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=4e-25 Score=137.11 Aligned_cols=144 Identities=47% Similarity=0.740 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc-ccCc
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM-KENV 82 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~ 82 (149)
.+++.+++++..+|..+|++++|.|+..+|..++..+ +..++...+..++..++.+++|.|++.+|+..+.... ....
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 5788999999999999999999999999999999988 8888899999999999999999999999998876543 3334
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.+.+..+|+.+|.+++|+|+..||..++...|..++..++..++..+|.+++|.|++++|..++..
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 478899999999999999999999999999999999999999999999999999999999998864
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.7e-25 Score=129.96 Aligned_cols=144 Identities=43% Similarity=0.692 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc-Cc
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE-NV 82 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~ 82 (149)
.+++++.+.++..|..+|++++|+|+.++|...+++. |..+..+++..+...+|+++.|.|++++|+..+...+.. .+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 4678888999999999999999999999999999999 999999999999999999999999999999998777664 46
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
++++..+|+.+|-+++|.|+..+|+.+...+|..++++++.+++..+|.+++|.|+-+||.+.+++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 699999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.93 E-value=3.4e-24 Score=126.60 Aligned_cols=140 Identities=34% Similarity=0.639 Sum_probs=131.2
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCc
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENV 82 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 82 (149)
+.|.+.+|++++++|..+|.|++|.|..++++.++.++ |-.++.+++..++.. ..|.|+|..|+.++...+....
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999 778999999999865 4889999999999988887766
Q ss_pred H-HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 83 S-EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 83 ~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+ +.+..+|+.+|.+++|.|..+.++.+|...|-++++++++.+|+.+..+..|.++|..|+..+.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 6 7789999999999999999999999999999999999999999999999999999999999875
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=1.1e-22 Score=118.37 Aligned_cols=142 Identities=32% Similarity=0.634 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCC--CCCcccHHHHHHHHHhhcccC-
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFD--GNGSIDFLEFLTIMGRKMKEN- 81 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~- 81 (149)
++++++.+++++|..+|..++|+|+..+...+++.+ |.+|+..++.+......++ +-.+|+|++|+.++.......
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 567888999999999999999999999999999999 9999999999999988776 457899999999997765543
Q ss_pred --cHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 82 --VSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 82 --~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+++.+-++.+|++++|+|...|++.+|..+|.+++++++..++.-.. |.+|.|.|+.|++.+.+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 3388999999999999999999999999999999999999999998876 78899999999997753
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-21 Score=118.58 Aligned_cols=140 Identities=34% Similarity=0.626 Sum_probs=117.7
Q ss_pred hhhHHHHHHHHHHHhhhcCC-CCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCc-ccHHHHHHHHHhhcccC
Q 032008 4 ALTEDQIAEFQEAFCMIDKD-SDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGS-IDFLEFLTIMGRKMKEN 81 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~ 81 (149)
+++..++.++...|.+++++ ++|.|+.++|..+.... .++- ...++..++..++|. |++.+|+..+....+..
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~--~Np~---~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA--LNPL---ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh--cCcH---HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 58899999999999999999 99999999999988333 3333 456677777777777 99999999999988887
Q ss_pred cHH-HHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCC--H----HHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 82 VSE-ELKEAFKVFDRDQDGFISAAELRNVMMNL-GERLS--D----EETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 82 ~~~-~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
... .++-+|+.||.+++|+|+.+|+.+++..+ +...+ + +.++..+..+|.++||.|+++||++++.+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 775 89999999999999999999999999987 33333 3 34567788899999999999999998754
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-20 Score=117.80 Aligned_cols=141 Identities=23% Similarity=0.460 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHH
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSE 84 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 84 (149)
+++.+++++++-|.. ...+|.++.++|+.++...+-..-+......+|+.+|.+++|.|++.||+..++...++...+
T Consensus 23 f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ee 100 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEE 100 (193)
T ss_pred CCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHH
Confidence 577778888777776 344799999999999999944455666789999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNL----GE-------RLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
.+..+|+.+|.|++|+|+++|+..++..+ |. .-..+.+..+|..+|.|+||.||++||.....
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 99999999999999999999999998875 21 12356789999999999999999999988654
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-19 Score=112.76 Aligned_cols=133 Identities=29% Similarity=0.472 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHH
Q 032008 9 QIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKE 88 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 88 (149)
....+...|..+|+++.|.|+.+|+..+|.....-..+.+.++.+...+|.+.+|+|.+.||..+.+.+ ..++.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~ 128 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRN 128 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHH
Confidence 345788899999999999999999999998664556788889999999999999999999999998766 56999
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 89 AFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+|+.+|.|+.|.|+..||++.|..+|+.++++..+.+++++|....|.|.+++|++++.
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977799999999999875
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.82 E-value=9.2e-19 Score=118.63 Aligned_cols=136 Identities=26% Similarity=0.468 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCC-CCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHH
Q 032008 6 TEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEH-PRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSE 84 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 84 (149)
.++--.+++.+|..+|.+++|.++..++...+..+ ..+ +..+....+++.+|.+.+|+|+|.+|..++.... .
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E-----~ 82 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-DHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE-----L 82 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-CCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH-----H
Confidence 34455689999999999999999999999999998 555 8888899999999999999999999999987654 4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
.+.++|+.+|.+++|.|...|+.+.|+.+|.++++++++.++++.|.++.+.|+++||.+++.
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 589999999999999999999999999999999999999999999999999999999998765
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.1e-16 Score=102.25 Aligned_cols=136 Identities=25% Similarity=0.424 Sum_probs=113.5
Q ss_pred HHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-----H
Q 032008 10 IAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-----E 84 (149)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-----~ 84 (149)
+.+-++.|...|.|++|.++++||..+|..--......-.+.+-+.-+|++++|+|+++||+.-+-........ .
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 44567889999999999999999999987762222334456888888999999999999999988666542222 3
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
+-.+.+...|.|++|+++.+|++..+...+......+...++...|.|++|++|++|.+.-
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 4567788899999999999999999988888888999999999999999999999998764
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-14 Score=89.70 Aligned_cols=102 Identities=32% Similarity=0.472 Sum_probs=92.9
Q ss_pred HHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCC-----CHHH
Q 032008 47 KEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERL-----SDEE 121 (149)
Q Consensus 47 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~~ 121 (149)
..++..+|..+|.+++|.|+..++...+......++.+++..++..+|.+++|.|+.++|..++...+... ..++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45688999999999999999999999999998888999999999999999999999999999999875432 3459
Q ss_pred HHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 122 TEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
+..+|+.+|.|++|.||..|+..+|.+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.62 E-value=2.3e-14 Score=104.41 Aligned_cols=104 Identities=22% Similarity=0.398 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcC-CCCCHHH---HHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQD-EHPRKEE---VQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
.+...+++++++.|..+|++++|.+ +..++..+ + ..++..+ +..++..+|.+++|.|+++||+.++.....
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 4677889999999999999999997 77788888 7 5788877 899999999999999999999999987654
Q ss_pred cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 80 ENVSEELKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
....+++..+|+.+|.+++|+|+.+|+..++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 456688999999999999999999999999988
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.54 E-value=5.8e-14 Score=74.56 Aligned_cols=61 Identities=56% Similarity=0.917 Sum_probs=53.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDE----ETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
+..+|+.+|.+++|+|+.+|+..++..++...++. .+..+++.+|.|++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999998766554 45555999999999999999999875
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.53 E-value=5.1e-14 Score=78.42 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=60.1
Q ss_pred HHHHHHhhhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDR-DQDGFISAAELRNVMMN-LGERLSD-EETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.||. +++|+|+..||+.++.. +|..++. ++++.++..+|.|++|.|+|+||+.++.+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 568899999999 99999999999999999 8877887 89999999999999999999999998754
No 17
>PTZ00183 centrin; Provisional
Probab=99.52 E-value=5.7e-13 Score=82.51 Aligned_cols=101 Identities=31% Similarity=0.381 Sum_probs=86.3
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHH
Q 032008 48 EEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL-GERLSDEETEQMI 126 (149)
Q Consensus 48 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~ 126 (149)
.++..+|..+|.+++|.|+..+|...+...........+..+|+.+|.+++|.|++++|...+... ......+.+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 356778889999999999999999998766444555789999999999999999999999987764 3445677899999
Q ss_pred HhhCcCCCCceeHHHHHHHHhc
Q 032008 127 READLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+|.+++|.|+..||..++..
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHH
Confidence 9999999999999999988753
No 18
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.2e-13 Score=90.33 Aligned_cols=138 Identities=25% Similarity=0.349 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc-----C-
Q 032008 8 DQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE-----N- 81 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-----~- 81 (149)
+...++..++.++|.+++|.|+..++..+.... .-.....+..+-|..++.+.+|.|+|++++..+-..... .
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s-~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQS-QKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 345688999999999999999999999988777 344445566777888999999999999998776532110 0
Q ss_pred -cH-------HHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 82 -VS-------EELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 82 -~~-------~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
.. ..-..-|+..|.|++|.+|.+||..+|.... ..+.+-.+..-+.-.|+|++|+|+++||+.-+
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 00 1234569999999999999999999998763 45667778899999999999999999998754
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.52 E-value=7.4e-13 Score=80.76 Aligned_cols=100 Identities=24% Similarity=0.280 Sum_probs=88.9
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q 032008 48 EEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETEQMI 126 (149)
Q Consensus 48 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~ 126 (149)
+++.+.|..+|.+++|.|++.++..+++......+.+.+.+++..+|. +.+.|+.++|..++...- ..-+.+++..+|
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 356778888999999999999999999966666777999999999999 999999999999998764 445689999999
Q ss_pred HhhCcCCCCceeHHHHHHHHhc
Q 032008 127 READLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
+.+|.|++|.|+..+++..+..
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHh
Confidence 9999999999999999998764
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.51 E-value=8.2e-13 Score=91.08 Aligned_cols=135 Identities=19% Similarity=0.351 Sum_probs=109.5
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc----------
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE---------- 80 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---------- 80 (149)
..+...|+++|+.++|+|+...+..++..+.+++++...++.-+. ....+|.|.|...+..+..-...
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla--~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLA--NGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhcc--CCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 356789999999999999999999999998888888766655443 34567899999887765321111
Q ss_pred --CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 81 --NVSEELKEAFKVFDRDQDGFISAAELRNVMMNL----GERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 81 --~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
.....+..+|+.+|.|+.|.||.+||++.++-+ ...++++++..+.+.+|.|+||.|++.||+.++.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 112457889999999999999999999998866 4567899999999999999999999999998753
No 21
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-12 Score=82.08 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=100.1
Q ss_pred CCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCC-CCcccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCCcccH
Q 032008 26 GLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDG-NGSIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDGFISA 103 (149)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~ 103 (149)
..++.+.+.++.. ....+..+++.+++.+-.+. .|.++.++|..++....+.... .-...+|+.+|.+++|+|+.
T Consensus 7 ~~~~~~~~e~l~~---~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F 83 (193)
T KOG0044|consen 7 SKLQPESLEQLVQ---QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDF 83 (193)
T ss_pred ccCCcHHHHHHHH---hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCH
Confidence 3445555555544 34678889999999998765 7999999999999988875554 56788999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 104 AELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 104 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.||...|...-....++-++.+|+.+|.|++|.|+++|++.++..
T Consensus 84 ~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 84 LEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 999999988776677888999999999999999999999988754
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.48 E-value=1.7e-12 Score=79.55 Aligned_cols=101 Identities=30% Similarity=0.431 Sum_probs=86.5
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAF 90 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 90 (149)
..+..+|..+|.+++|.|+.++|..++............+..+|..+|.+++|.|+..+|..++.........+.+..+|
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 35678899999999999999999998876534445667789999999999999999999999987765555668899999
Q ss_pred hhhcCCCCCcccHHHHHHHHH
Q 032008 91 KVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
+.+|.+++|.|+++||..++.
T Consensus 127 ~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 127 READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HhcCCCCCCcCcHHHHHHHHh
Confidence 999999999999999987764
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-11 Score=78.09 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=105.1
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAF 90 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 90 (149)
+.++.+...+|.+.+|+|..+||..+-..+ ..++.+|..+|++++|.|+..|+...+...-...+++.+..++
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv 166 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLV 166 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHH
Confidence 344556677789999999999999977655 4799999999999999999999999998777777778899999
Q ss_pred hhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCc--eeHHHHHHHHhc
Q 032008 91 KVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGL--VSFEEFARMMMA 148 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--i~~~ef~~~l~~ 148 (149)
+.+|..+.|.|..++|.+++..+. .+-.+|+..|.+..|. |+|++|+.+...
T Consensus 167 ~kyd~~~~g~i~FD~FI~ccv~L~------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~~ 220 (221)
T KOG0037|consen 167 RKYDRFGGGRIDFDDFIQCCVVLQ------RLTEAFRRRDTAQQGSITISYDDFLQMTMS 220 (221)
T ss_pred HHhccccCCceeHHHHHHHHHHHH------HHHHHHHHhccccceeEEEeHHHHHHHhhc
Confidence 999988899999999999888653 4677899999888884 688999887543
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.44 E-value=1.1e-12 Score=73.21 Aligned_cols=65 Identities=28% Similarity=0.499 Sum_probs=59.6
Q ss_pred HHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFD-RDQDG-FISAAELRNVMMN-----LGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.+| .+++| +|+.+|++.+++. .|...+++++..+++.+|.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46889999998 79999 6999999999999 788889999999999999999999999999988753
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=1.3e-12 Score=72.81 Aligned_cols=71 Identities=15% Similarity=0.327 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhhcC-CCCCCccHHHHHHHHHH-hcCCCCCH-HHHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 7 EDQIAEFQEAFCMIDK-DSDGLITMKDLATVIQS-AQDEHPRK-EEVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
+..+..+..+|+.+|+ +++|+|+..+|+.++.. + +..++. .++..++..+|.+++|+|+|+||+.++....
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 4567889999999999 99999999999999999 6 666776 8999999999999999999999999887653
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=1.2e-12 Score=69.41 Aligned_cols=62 Identities=37% Similarity=0.652 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHH----HHHHHhhccCCCCCcccHHHHHHHH
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEE----VQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
+++.+|..+|.+++|.|+.++|..++... +...+... +..++..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46788999999999999999999988888 65554433 4444777777777777777777653
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=7.2e-12 Score=69.88 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-CccHHHHHHHHHH-----hcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 7 EDQIAEFQEAFCMID-KDSDG-LITMKDLATVIQS-----AQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+.-+..+..+|..+| ++++| .|+.++|+.++.. . +..++++++..++..+|.+++|+|+|++|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456778999999998 79999 5999999999998 6 888899999999999999999999999999887644
No 28
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.38 E-value=1.7e-11 Score=84.96 Aligned_cols=136 Identities=19% Similarity=0.326 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHh----hccCCCCCcccHHHHHHHHHhhccc
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMIS----EVDFDGNGSIDFLEFLTIMGRKMKE 80 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~d~~~~g~i~~~ef~~~~~~~~~~ 80 (149)
+|.+....+...|..+|.+++|.|+.+++.... ....+.--+.++|. ......+|+++|++|+.++.+....
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~----d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k 347 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG----DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK 347 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHh----ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC
Confidence 455666677777999999999999999998876 45566778899998 3344578999999999999999888
Q ss_pred CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-------CC-C-CCHHHHHHHHHhhCcCCCCceeHHHHHH
Q 032008 81 NVSEELKEAFKVFDRDQDGFISAAELRNVMMNL-------GE-R-LSDEETEQMIREADLDGDGLVSFEEFAR 144 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~-~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
..++.+...|+.+|.+++|.++..|+.-++... +. . .-+..+.+++..+.+...++||+.+|..
T Consensus 348 ~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 888999999999999999999999999887754 21 1 1256678899999888889999999976
No 29
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.37 E-value=7.4e-11 Score=69.98 Aligned_cols=139 Identities=30% Similarity=0.499 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHhhhcCCC-----------CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHH
Q 032008 5 LTEDQIAEFQEAFCMIDKDS-----------DGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTI 73 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 73 (149)
+...++-++...|..+.++. .-.++.+.+.+ +..+ .-++-. +++...+..+|.|.+++++|+.+
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPEL-kenpfk---~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPEL-KENPFK---RRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-Chhh-hcChHH---HHHHHHhccCCCCcccHHHHHHH
Confidence 45567777777787776531 12344444443 2333 233333 45556667899999999999999
Q ss_pred HHhhcccCcH-HHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHH----HHHHhhCcCCCCceeHHHHHHHHh
Q 032008 74 MGRKMKENVS-EELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETE----QMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 74 ~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
++...-..+. -.+..+|+.+|-|++++|...++...+..+. ..++++++. .++...|.|++|++++.||..++.
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 8766543332 4567889999999999999999999998873 457777754 456677999999999999998775
Q ss_pred c
Q 032008 148 A 148 (149)
Q Consensus 148 ~ 148 (149)
+
T Consensus 177 r 177 (189)
T KOG0038|consen 177 R 177 (189)
T ss_pred h
Confidence 3
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.36 E-value=5.3e-12 Score=64.24 Aligned_cols=52 Identities=46% Similarity=0.805 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 97 QDGFISAAELRNVMMNLGER-LSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
++|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+++||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998864
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.36 E-value=7e-12 Score=69.92 Aligned_cols=65 Identities=23% Similarity=0.466 Sum_probs=58.2
Q ss_pred HHHHHHhhhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDR-DQ-DGFISAAELRNVMMN---LGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.||. ++ +|+|+.+||+.++.. +|.+++++++..+++.+|.|++|.|+|+||+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 457788999998 66 899999999999973 688899999999999999999999999999988753
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.36 E-value=6.5e-12 Score=71.21 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=57.7
Q ss_pred HHHHHHhhhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDR-DQ-DGFISAAELRNVMMN-----LGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.+|. ++ +|.|+..|+..++.. +|...+.+++..++..+|.+++|.|++++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 568899999997 87 699999999999986 466788999999999999999999999999988753
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=6.7e-12 Score=70.90 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=55.9
Q ss_pred HHHHHHhhhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFD-RDQDG-FISAAELRNVMMNL-----GERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.|| .+++| +|+..||+.++... +...++.++..+++.+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 46788899999 78998 59999999999763 33457789999999999999999999999998764
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=99.35 E-value=2.1e-11 Score=89.26 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=90.4
Q ss_pred CCccHHHHHHHHHH--hcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc-ccCcHHH---HHHHhhhhcCCCCC
Q 032008 26 GLITMKDLATVIQS--AQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM-KENVSEE---LKEAFKVFDRDQDG 99 (149)
Q Consensus 26 g~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~---~~~~f~~~D~~~~g 99 (149)
..++.+++...... ..-.....+++.+.|..+|.+++|.+ +-..+.... ..+..++ +..+|..+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 45666666665443 10122234567888999999999997 333333332 1233333 79999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||.+++..
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999887788999999999999999999999999998764
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.34 E-value=1.1e-11 Score=69.95 Aligned_cols=65 Identities=28% Similarity=0.552 Sum_probs=57.1
Q ss_pred HHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFD-RDQDG-FISAAELRNVMMN-LG----ERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
+.+..+|+.+| .+++| .|+.+|++.+++. +| ...+++++..++..+|.+++|.|++++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56899999997 99999 5999999999986 43 3458889999999999999999999999998764
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.32 E-value=2.4e-11 Score=69.13 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
.++++++..+..+|..+|.+++|.|+.+++..++... + ++.+++..++..++.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999875 4 577889999999999999999999999887544
No 37
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=3.5e-11 Score=67.12 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhhhcC-CC-CCCccHHHHHHHHHH---hcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 6 TEDQIAEFQEAFCMIDK-DS-DGLITMKDLATVIQS---AQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
.+..+..+-.+|++|+. ++ +|+|+.++|+.++.. . |..++.+++..+++.+|.+++|+|+|++|+.++...
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 35667788999999997 67 899999999999974 4 788999999999999999999999999999888655
No 38
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=9.9e-11 Score=70.46 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=91.6
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAF 90 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 90 (149)
+++.++...+|+++.|.|+.++|........+...+.+++...|+.+|.+++|+|++.+|..+...+......+++....
T Consensus 69 ~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMI 148 (172)
T KOG0028|consen 69 EEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMI 148 (172)
T ss_pred HHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHH
Confidence 34556778889999999999999998777767777999999999999999999999999999998887777889999999
Q ss_pred hhhcCCCCCcccHHHHHHHHHH
Q 032008 91 KVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
.-+|.+++|-|+.+||..+++.
T Consensus 149 eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 149 EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHhcccccccccHHHHHHHHhc
Confidence 9999999999999999988764
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=1.7e-11 Score=65.15 Aligned_cols=59 Identities=37% Similarity=0.485 Sum_probs=53.8
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+.+|+.+|.+++|.|+.+|+..++...| .+.+++..++..++.+++|.|+++||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5689999999999999999999999876 4888999999999999999999999998775
No 40
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-10 Score=73.63 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=84.4
Q ss_pred HHHHhhhcCCCCCC-ccHHHHHHHHHHhcCCCCC-HHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-------H
Q 032008 14 QEAFCMIDKDSDGL-ITMKDLATVIQSAQDEHPR-KEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-------E 84 (149)
Q Consensus 14 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-------~ 84 (149)
.+++..++.+++|. |+.++|.+++... ..... .+.++-.|+.+|.+++|.|+.+++...+......... .
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 46888888888888 9999999999988 44444 4489999999999999999999999999887774322 4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
.+..+|..+|.+++|.|+.+|++.++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 57788999999999999999999998864
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.28 E-value=2.9e-11 Score=68.83 Aligned_cols=62 Identities=27% Similarity=0.529 Sum_probs=56.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
..+..+|+.+|.+++|.|+.+++..++...| ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 6788999999999999999999999999865 6888999999999999999999999998764
No 42
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=8.1e-11 Score=66.48 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhhhc-CCCCC-CccHHHHHHHHHHhc----CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 6 TEDQIAEFQEAFCMID-KDSDG-LITMKDLATVIQSAQ----DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
.+..+..+.++|+.+| .+++| .|+..||+.++.... ....+..++..++..+|.+++|.|+|+||+.++..+.
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3456678899999999 78998 599999999997631 2345778999999999999999999999999887653
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.27 E-value=6.3e-11 Score=61.62 Aligned_cols=61 Identities=57% Similarity=0.962 Sum_probs=56.9
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
+..+|..+|.+++|.|+.+++..++...+...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999998875
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.26 E-value=1e-10 Score=66.05 Aligned_cols=71 Identities=24% Similarity=0.499 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-CccHHHHHHHHHH-h---cCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 7 EDQIAEFQEAFCMID-KDSDG-LITMKDLATVIQS-A---QDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+..+..+.++|..+| .+++| .|+..++..++.. + .+..++.+++..++..+|.+++|.|+|++|+.++...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 344578999999997 99999 5999999999986 3 1335688999999999999999999999999888654
No 45
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.26 E-value=4.3e-11 Score=67.05 Aligned_cols=65 Identities=22% Similarity=0.454 Sum_probs=56.3
Q ss_pred HHHHHHhhhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDR--DQDGFISAAELRNVMMN-LGER----LSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
+.+..+|..+|. +++|.|+.+++..++.. .|.. .+.+++..++..+|.+++|.|++++|+.++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 568889999999 89999999999999976 4433 45889999999999999999999999988753
No 46
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=8.7e-11 Score=65.80 Aligned_cols=71 Identities=21% Similarity=0.487 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCccHHHHHHHHHHhcCCC----CCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 7 EDQIAEFQEAFCMIDK--DSDGLITMKDLATVIQSAQDEH----PRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+.+++.++.+|..+|+ +++|.|+.+++..++....+.. ++.+++..++..++.+++|.|++++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999 8999999999999997632433 358899999999999999999999999988654
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=1.6e-10 Score=65.52 Aligned_cols=69 Identities=14% Similarity=0.377 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhcC-CC-CCCccHHHHHHHHHHh----cCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 8 DQIAEFQEAFCMIDK-DS-DGLITMKDLATVIQSA----QDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
.....+..+|..+|. ++ +|.|+..++..++... .+..++.+++..++..+|.+++|.|++++|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 446778999999997 87 6999999999998862 156788899999999999999999999999988753
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.5e-10 Score=64.69 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=55.5
Q ss_pred HHHHHHhhh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKV-FDRDQDG-FISAAELRNVMMNL-----GERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+. .|.+++| +|+.+||..++... +....+.++..++..+|.|++|.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457888999 6787876 99999999999986 33456789999999999999999999999998754
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.21 E-value=1.1e-10 Score=68.26 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
...+..+|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|.||++||+.++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3678899999999999999999999876 224567889999999999999999999999874
No 50
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.19 E-value=7.1e-10 Score=86.15 Aligned_cols=134 Identities=22% Similarity=0.440 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCC-------HHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPR-------KEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
..++++..++.-+|..||++.+|+++..+|..+|+.. |+..+ .+++.+++..+|++.+|.|+..+|..+|..
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4688899999999999999999999999999999999 77662 347899999999999999999999999987
Q ss_pred hcccCcH--HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC----c----CCCCceeHHHHHHHH
Q 032008 77 KMKENVS--EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD----L----DGDGLVSFEEFARMM 146 (149)
Q Consensus 77 ~~~~~~~--~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~----~~~g~i~~~ef~~~l 146 (149)
....+.. +.+..+|+.+|. +.-||+.+++... ++++++..++.++. + ...+.++|.+|++.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 7665433 789999999998 7789998887533 56666666666543 2 224568999998765
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=99.14 E-value=4.2e-10 Score=58.34 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=56.7
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCcCCC-CceeHHHHHHHHhc
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNLGE-RLSDEETEQMIREADLDGD-GLVSFEEFARMMMA 148 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 148 (149)
.+|.++|+++.|.|...++..+|+.++. ..++.+++.+.+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 8889999999999999887 99999999998874
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=4.1e-10 Score=59.70 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=53.1
Q ss_pred HHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 14 QEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+++|..+|.+++|.|+.+++..++... +. +.+++..++..++.+++|.|++.+|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-GL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-CC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568899999999999999999999877 54 77889999999999999999999998887644
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=1.1e-09 Score=61.20 Aligned_cols=72 Identities=22% Similarity=0.463 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhh-hcCCCCC-CccHHHHHHHHHHhc----CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 6 TEDQIAEFQEAFCM-IDKDSDG-LITMKDLATVIQSAQ----DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 6 ~~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
.+..+..+..+|.. .|.+++| .|+.+||+.++.... +...+..++..++..+|.+++|+|+|+||+.++..+
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35667889999999 5677875 999999999998762 234567889999999999999999999999888655
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.13 E-value=3.7e-10 Score=57.33 Aligned_cols=52 Identities=35% Similarity=0.582 Sum_probs=45.3
Q ss_pred CCCCccHHHHHHHHHHhcCCC-CCHHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 24 SDGLITMKDLATVIQSAQDEH-PRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
++|.|+.++|..++..+ |.. ++.+++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36889999999999777 888 99999999999999999999999999888753
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.10 E-value=8.8e-10 Score=57.18 Aligned_cols=61 Identities=49% Similarity=0.796 Sum_probs=52.9
Q ss_pred HHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 032008 13 FQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
+..+|..+|.+++|.|+.+++..++... +...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5677888899999999999999999888 888888888999999998889999999987654
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2.2e-09 Score=74.32 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=100.3
Q ss_pred HHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHH--HHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhh
Q 032008 14 QEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKE--EVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFK 91 (149)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 91 (149)
+--|..+|+..+|.|+..+|..++-...+.+.... .+.++-+++... +..|+++||..+..-.... .++..+.+
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l---~dfd~Al~ 396 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNL---NDFDIALR 396 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhh---hHHHHHHH
Confidence 44689999988899999999999887744433332 456777777665 4559999999988755444 34555555
Q ss_pred hhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 92 VFDRDQDGFISAAELRNVMMNL-GERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 92 ~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.+- ...+.|+..+|..+.... |..+++..++-+|.-+|.|+||.++.+||+..|.+
T Consensus 397 fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 397 FYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 553 234679999999987765 88899889999999999999999999999998864
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.08 E-value=6.8e-09 Score=71.49 Aligned_cols=122 Identities=17% Similarity=0.323 Sum_probs=98.5
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhh
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFK 91 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 91 (149)
-...+|..+|.|.+|.++.++|.+.+..- +.++..+|..+|.+++|.|+..|....+...--....+.+..+|.
T Consensus 52 ~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e 125 (463)
T KOG0036|consen 52 AAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFE 125 (463)
T ss_pred HHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHH
Confidence 34568899999999999999999988755 778999999999999999999999999988777777788999999
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH---Hh---hCcCCCCceeHHHHHH
Q 032008 92 VFDRDQDGFISAAELRNVMMNLGERLSDEETEQMI---RE---ADLDGDGLVSFEEFAR 144 (149)
Q Consensus 92 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---~~---~d~~~~g~i~~~ef~~ 144 (149)
..|+++++.|+++|+++.+.-.. .+.+..++ ++ +|...+..|+ ++|..
T Consensus 126 ~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 126 HMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred HhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHH
Confidence 99999999999999999887532 44454443 33 3555565565 55543
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.08 E-value=6.2e-10 Score=62.21 Aligned_cols=65 Identities=20% Similarity=0.424 Sum_probs=55.2
Q ss_pred HHHHHHhhhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDRD--QDGFISAAELRNVMM-NLGERLS----DEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
..+..+|+.++.. ++|.|+.+|+..++. .+|..++ +.++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4577889999866 478999999999997 4455555 899999999999999999999999998764
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.03 E-value=3.3e-09 Score=59.31 Aligned_cols=71 Identities=14% Similarity=0.343 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhcCC--CCCCccHHHHHHHHHHhcCCCCC----HHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 7 EDQIAEFQEAFCMIDKD--SDGLITMKDLATVIQSAQDEHPR----KEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+..+..+...|..++.. ++|.|+.++|..++....+..++ .+++..++..+|.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999999865 47999999999999754355555 8899999999999999999999999888654
No 60
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.98 E-value=6.7e-09 Score=60.72 Aligned_cols=62 Identities=26% Similarity=0.301 Sum_probs=48.4
Q ss_pred CHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 032008 46 RKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 46 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 111 (149)
-...+.-.|..+|.+++|.|+.+|+..+. .......+..+|..+|.|++|.||.+|+...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45567888888888888888888888766 122345677888888999999999999888884
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.98 E-value=1.1e-08 Score=64.01 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCc-
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENV- 82 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~- 82 (149)
.|+..+|+.+..+|..||.+.+|+|+..|++.++.++ |.+-+---+..++...|-+.+|+|++.+|+-.+......--
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 5889999999999999999999999999999999999 88888778899999999999999999999887765544311
Q ss_pred -HHHHHHHhh--hhcCCCCCcccHHHHHH
Q 032008 83 -SEELKEAFK--VFDRDQDGFISAAELRN 108 (149)
Q Consensus 83 -~~~~~~~f~--~~D~~~~g~i~~~e~~~ 108 (149)
...+...=+ .+|..+.|.-....|-+
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 123333333 36777777666555443
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.96 E-value=6.1e-09 Score=54.03 Aligned_cols=61 Identities=34% Similarity=0.609 Sum_probs=55.9
Q ss_pred HHhhhcCCCCCCccHHHHHHHHHHhcCC-CCCHHHHHHHHhhccCCCC-CcccHHHHHHHHHhh
Q 032008 16 AFCMIDKDSDGLITMKDLATVIQSAQDE-HPRKEEVQEMISEVDFDGN-GSIDFLEFLTIMGRK 77 (149)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~~ 77 (149)
.|..+|+++.|.|...++..+|+.+ +. .+...+++.+...+|.++. |.|+++.|...|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~-~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV-TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH-cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 6889999999999999999999999 66 9999999999999999988 999999999988754
No 63
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.89 E-value=8.7e-09 Score=66.60 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=92.5
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhc--CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH---
Q 032008 9 QIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQ--DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS--- 83 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~--- 83 (149)
-.+.++.+|.+.|.|.+|+|+..++++....-. ...-+.++...-|+..|.+++|.|+|++|..-+.........
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 345789999999999999999999988665431 111223345667888999999999999997655433221111
Q ss_pred ------------HHHHHH--------hhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCcCCCCceeHHHH
Q 032008 84 ------------EELKEA--------FKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETEQMIREADLDGDGLVSFEEF 142 (149)
Q Consensus 84 ------------~~~~~~--------f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef 142 (149)
++.+.+ ++.=.+..+-.++.+|+..+|.... ..+-...+..++..+|+|++..++..+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 111221 2222223344566688888877542 2344566888999999999999999999
Q ss_pred HHH
Q 032008 143 ARM 145 (149)
Q Consensus 143 ~~~ 145 (149)
+..
T Consensus 259 isl 261 (362)
T KOG4251|consen 259 ISL 261 (362)
T ss_pred hcC
Confidence 864
No 64
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.88 E-value=5.8e-08 Score=53.91 Aligned_cols=71 Identities=13% Similarity=0.326 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhc----CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 7 EDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQ----DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
+..+..+..+|.+|.. ..+.++..||+.++..-. ....++..+..++..+|.+++|.|+|.||+.++....
T Consensus 4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4556778899999984 457999999999996653 3444678899999999999999999999999887653
No 65
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.87 E-value=1e-07 Score=56.40 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=89.5
Q ss_pred CHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCC--CCCcccHHHHHHHHHHhC---CCCCHH
Q 032008 46 RKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRD--QDGFISAAELRNVMMNLG---ERLSDE 120 (149)
Q Consensus 46 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~---~~~~~~ 120 (149)
...+++++|..+|..++|+|++.+--..++..-..++..++.++...++++ +--.|++++|.-+++.+. ...+-+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 346789999999999999999999999998888888889999999999877 446899999999998774 345777
Q ss_pred HHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 121 ETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 121 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
++-+-++.+|+.++|.|...|+.+.|..
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 8888899999999999999999998763
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.80 E-value=3e-07 Score=65.06 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=76.2
Q ss_pred HHHHHHHhh---hcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHH-hhccCCCCCcccHHHHHHHHHhhcccCcHHHH
Q 032008 11 AEFQEAFCM---IDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMI-SEVDFDGNGSIDFLEFLTIMGRKMKENVSEEL 86 (149)
Q Consensus 11 ~~l~~~f~~---~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 86 (149)
.+++.+|-+ .+.++...++.++|......+++.+-..+++..+. ...|..++|-|+|+||..+-...+.+ ....
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p--Dal~ 110 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP--DALF 110 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc--hHHH
Confidence 344555544 46788889999999887666655544444454444 45578899999999999887666555 3678
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
..+|..+|..+.|.+|.+++.+++...
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhcc
Confidence 889999999999999999999998864
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.80 E-value=4.8e-08 Score=61.23 Aligned_cols=64 Identities=38% Similarity=0.615 Sum_probs=59.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
..+..+|..+|.+.||+|+.-|++.++..+|...+.--+..++..+|.|.+|+||+.||+-++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 5688999999999999999999999999999988888999999999999999999999976543
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.76 E-value=1.3e-07 Score=52.57 Aligned_cols=63 Identities=17% Similarity=0.400 Sum_probs=52.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNL-----GERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
..+..+|+.|. .+.++++..||+.++... +-.-.+..++.+++..|.|+||.|++.||+.++.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45677899997 456799999999999764 2334678899999999999999999999998874
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.76 E-value=2e-08 Score=43.95 Aligned_cols=26 Identities=50% Similarity=0.807 Sum_probs=14.2
Q ss_pred HHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 122 TEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
++.+|+.+|.|++|.|+++||..++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 44555555555555555555555544
No 70
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.2e-07 Score=64.68 Aligned_cols=130 Identities=25% Similarity=0.354 Sum_probs=91.7
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhc-CCCCC-------------HHHHHH--HHhhccCCCCCcccHHHHHHHHH
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQ-DEHPR-------------KEEVQE--MISEVDFDGNGSIDFLEFLTIMG 75 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~-------------~~~~~~--~~~~~d~~~~g~i~~~ef~~~~~ 75 (149)
.+.-.|..+|.|++|.|+.+||....+... +.... ..++.. +..-+.+++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 345678999999999999999998775442 11110 111111 22235788999999999999987
Q ss_pred hhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCC--HHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 76 RKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLS--DEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 76 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
.+.. +.+..-|..+|+...|.|+..+|..++...- .+.. ..-+..+-+++... +..||++||.++.
T Consensus 314 ~Lq~----Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 314 NLQE----EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred HHHH----HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 6533 4567779999999999999999999988753 2222 22356667777755 4569999988764
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.72 E-value=2.6e-08 Score=43.57 Aligned_cols=28 Identities=50% Similarity=0.802 Sum_probs=21.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
++..+|+.+|.|++|+|+.+||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3567788888888888888888777764
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.71 E-value=8.1e-08 Score=55.07 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
.++++|.+.+..+|..+++ ++|.|+-++...+|... .++.+.+..+|...|.+++|.++++||+..|...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4788999999999999986 68999999999998866 4567899999999999999999999998877543
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.70 E-value=2e-07 Score=53.44 Aligned_cols=62 Identities=37% Similarity=0.574 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
...+..+|..+++ ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|.++.+||+-+|.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3678899999985 689999999999999876 7889999999999999999999999987653
No 74
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.67 E-value=1.6e-07 Score=60.84 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=82.5
Q ss_pred HHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCH-----------------------------------------------
Q 032008 15 EAFCMIDKDSDGLITMKDLATVIQSAQDEHPRK----------------------------------------------- 47 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----------------------------------------------- 47 (149)
-.|+..|++++|.|++++++--+.+..+..-..
T Consensus 144 thFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEfls 223 (362)
T KOG4251|consen 144 THFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLS 223 (362)
T ss_pred hheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHH
Confidence 467888999999999999887766652222110
Q ss_pred ------------HHHHHHHhhccCCCCCcccHHHHHHHHHhh----cccCcH-----HHHHHHhhhhcCCCCCcccHHHH
Q 032008 48 ------------EEVQEMISEVDFDGNGSIDFLEFLTIMGRK----MKENVS-----EELKEAFKVFDRDQDGFISAAEL 106 (149)
Q Consensus 48 ------------~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~----~~~~~~-----~~~~~~f~~~D~~~~g~i~~~e~ 106 (149)
..+..+...+|++++..++..+|+...-.. ...... ...+..-..+|.+++|.+|.+|+
T Consensus 224 FLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeEL 303 (362)
T KOG4251|consen 224 FLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEEL 303 (362)
T ss_pred HcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHH
Confidence 013445555667777777777775432111 111100 22334445678888888888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHH
Q 032008 107 RNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFAR 144 (149)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
..+........+-.++..++..-|.+++.+++.++...
T Consensus 304 e~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 304 EDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 77766666666667777777777777777887777654
No 75
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.56 E-value=1.4e-07 Score=63.37 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=92.5
Q ss_pred CCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC-cHHHHHHHhhhhcCCCCCcc
Q 032008 23 DSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN-VSEELKEAFKVFDRDQDGFI 101 (149)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~f~~~D~~~~g~i 101 (149)
.+.+.|...+|..-++ .+. ...++.+|..+|.+++|.++|.+.+..+...+.+. ....++-+|+.|+.+.||.+
T Consensus 239 ~kg~~igi~efa~~l~----vpv-sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLR----VPV-SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred ccCCCcceeEeeeeee----cch-hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence 3445555555555432 222 25678899999999999999999988887776654 44778899999999999999
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 102 SAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 102 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
..+++--+|+... ++..-.+.-+|...++..+|+|++.+|.++..
T Consensus 314 ge~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 314 GEHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred chHHHHHHHHHhc-CcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 9999988888652 24555577789999999999999999998764
No 76
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.55 E-value=1.1e-06 Score=52.57 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=78.6
Q ss_pred HHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC-cHHH----HHHH
Q 032008 15 EAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN-VSEE----LKEA 89 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~----~~~~ 89 (149)
++...+..+|.|.++.++|..++..++.-.+..-.+...|+.+|-++++.|.-.++...+....... ..++ ...+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4566667899999999999999988855555555677888999999999999999887776655432 2233 4567
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHh
Q 032008 90 FKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
....|.+++|.++..||..+..+.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 788899999999999999988764
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.53 E-value=1.8e-07 Score=41.71 Aligned_cols=29 Identities=59% Similarity=1.043 Sum_probs=21.3
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHH-HhC
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMM-NLG 114 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 114 (149)
+..+|+.+|.+++|+|+.+||..++. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56778888888888888888888877 444
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.52 E-value=1.3e-06 Score=61.47 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=46.6
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
...+..+|+.+|.+++|+|+.+||.. ...+|..+|.|++|.|+++||...+.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 36789999999999999999999942 57889999999999999999999775
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=7.8e-06 Score=60.97 Aligned_cols=136 Identities=21% Similarity=0.376 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc-----
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK----- 79 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----- 79 (149)
+++++...-...|..+-+ +.|+|+-.+-+.+|-.. + ++...+..+|...|.+.||+++..||...|.....
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS-~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQS-G--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhc-C--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 456677777777777744 67899998888888755 4 45567888999999999999999999766533100
Q ss_pred --------------------------------------------------------------------------------
Q 032008 80 -------------------------------------------------------------------------------- 79 (149)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (149)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -------------------------cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCC
Q 032008 80 -------------------------ENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGD 134 (149)
Q Consensus 80 -------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 134 (149)
....-.+...|..+|+...|++|-..-+.+|.-.+ ++...+..+|...|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 00001356789999999999999999999988665 678889999999999999
Q ss_pred CceeHHHHHHHH
Q 032008 135 GLVSFEEFARMM 146 (149)
Q Consensus 135 g~i~~~ef~~~l 146 (149)
|+++-+||+-.|
T Consensus 244 GkL~~dEfilam 255 (1118)
T KOG1029|consen 244 GKLSADEFILAM 255 (1118)
T ss_pred CcccHHHHHHHH
Confidence 999999998654
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.42 E-value=1.4e-05 Score=59.54 Aligned_cols=136 Identities=16% Similarity=0.319 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHH
Q 032008 8 DQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELK 87 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 87 (149)
....-+..+|+..|.+++|.++..+...++..+ ...+....+..+|+..+..+++++...+|..+.......+ ++.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~ 208 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVY 208 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHH
Confidence 344557789999999999999999999999988 8888888899999999888999999999999887655543 678
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCcC----CCCceeHHHHHHHHhc
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNLG--ERLSDEETEQMIREADLD----GDGLVSFEEFARMMMA 148 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 148 (149)
..|..+..+ .++++..++..++.... .+.+.+.+..+++.+... ..+.++++.|.++|.+
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 888888654 89999999999999874 356778888888877533 4567999999998854
No 81
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.40 E-value=3.2e-06 Score=61.22 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=101.6
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCC-----CCCcccHHHHHHHHHh
Q 032008 2 ADALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFD-----GNGSIDFLEFLTIMGR 76 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~ 76 (149)
.++|.+..++.+.++|...|.|.+|.++-.|+..+-..+++.++...++..+-...... ..+.++..-|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 45678899999999999999999999999999998888878899988877666555322 2445777778877777
Q ss_pred hcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-C--CCCC---HHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 77 KMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL-G--ERLS---DEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 77 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~--~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
......++..+.+.|.+--+.+-.++.+-+...+..- + ..++ -+-+..+|..+|.|+||.++-.|+.++..
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 7666666777777777765554444433332222111 0 1112 23466777778888888888888776654
No 82
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.40 E-value=1.5e-06 Score=50.79 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=47.9
Q ss_pred cccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 78 MKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 78 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
........+...|..+|.|++|.++..|+..+...+ ...+..+..++...|.|+||.||..|+..+
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 334444678888999999999999999998776644 345557899999999999999999999753
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.40 E-value=2e-06 Score=42.21 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=39.1
Q ss_pred CccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 27 LITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
+++..|++.+|+.+ ++.++...+..+|+..|++++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 36888999999998 99999999999999999999999999999988764
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.39 E-value=2.5e-06 Score=41.90 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
++..|+..+|+.+++.+.+.-+..+|+.+|.+++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999888753
No 85
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.36 E-value=2.9e-05 Score=47.04 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCccc
Q 032008 23 DSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFIS 102 (149)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 102 (149)
...|-|++-.|..++..-....-+++.+...|..+|.+++|.|.-+.+..++.........+++..+|+.+-.+..|.+.
T Consensus 76 Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 76 EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCcee
Confidence 35678888887777665545555677889999999999999999999999998877777789999999999999999999
Q ss_pred HHHHHHHHH
Q 032008 103 AAELRNVMM 111 (149)
Q Consensus 103 ~~e~~~~l~ 111 (149)
+..|..++.
T Consensus 156 y~~~~~~it 164 (171)
T KOG0031|consen 156 YKAFTYIIT 164 (171)
T ss_pred HHHHHHHHH
Confidence 999988877
No 86
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=8.7e-07 Score=39.41 Aligned_cols=29 Identities=41% Similarity=0.777 Sum_probs=23.7
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHH-Hh
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQ-SA 40 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~ 40 (149)
+++.+|..+|.+++|.|+.+||..++. ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 467889999999999999999999887 44
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.33 E-value=3.9e-06 Score=59.05 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=52.8
Q ss_pred hcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 40 AQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
+.+.....+.+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+..
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 336777788899999999999999999999952 467899999999999999999998875
No 88
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.31 E-value=3.1e-06 Score=59.52 Aligned_cols=131 Identities=21% Similarity=0.311 Sum_probs=96.1
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHH--HHHhcCCC------------CCHHHHHH---HHhhccCCCCCcccHHHHHHHH
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATV--IQSAQDEH------------PRKEEVQE---MISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~--l~~~~~~~------------~~~~~~~~---~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
.+.++|.-+++.+.|.|+..++... +..+ ... -+.+.... .|..+|++++|-|+.++...+.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l-~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDAL-LELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHH-HHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 3568899999999999998886652 2222 100 01111222 3667899999999999988776
Q ss_pred HhhcccCcHHHHHHHhh----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 75 GRKMKENVSEELKEAFK----VFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
...... --+.++|. ..-...+|.++.++|..++.+..-+-++.-++.+|+.+|.+++|.++..|...+.
T Consensus 305 d~tlt~---~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 305 DHTLTE---RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred ccchhh---HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHH
Confidence 544432 34677777 3344568999999999999998777788889999999999999999998876553
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.28 E-value=5.8e-06 Score=59.10 Aligned_cols=75 Identities=29% Similarity=0.538 Sum_probs=65.3
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCC---CCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEH---PRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
++++++|+..+.+.|...| +++|+++..++..++... +.. ..+++++++....+.+.+|+|++++|+..+.....
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 5799999999999999999 999999999999999988 433 34788999999999999999999999996644433
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.25 E-value=1.6e-06 Score=36.48 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=8.6
Q ss_pred HhhhhcCCCCCcccHHHHHH
Q 032008 89 AFKVFDRDQDGFISAAELRN 108 (149)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~ 108 (149)
+|+.+|.|++|.|+.+|+.+
T Consensus 4 ~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHH
Confidence 34444444444444444433
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.24 E-value=2.5e-06 Score=35.87 Aligned_cols=25 Identities=44% Similarity=0.817 Sum_probs=22.1
Q ss_pred HHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 122 TEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 92
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.21 E-value=9.4e-06 Score=57.06 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=46.1
Q ss_pred CHHHHHHHHhhccCCCCCcccHHHHHHHHHhhccc----CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 46 RKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKE----NVSEELKEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 46 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
.+..++.+|..+|.+++|.|+.+||...+...... ...+.+...-+.+|.|++|.|+..||.+.++-.
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 35567777777777777888888877665443322 233667777777788888888877777776643
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.18 E-value=5.8e-06 Score=65.52 Aligned_cols=65 Identities=26% Similarity=0.566 Sum_probs=58.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLS-------DEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.++..+|..||.+++|.++..+|..+|+.+|+.++ +.++..++..+|++.+|+|+..+|.++|.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 46778899999999999999999999999998762 237999999999999999999999999864
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.10 E-value=1.9e-05 Score=56.36 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=37.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc-CCCCceeHHHH
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADL-DGDGLVSFEEF 142 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef 142 (149)
...++|+..|+.++|.||.-++..++-....++....++..+-.... +....+|+..|
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 35667888888888888888888777766555555556655555543 33334555444
No 95
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.86 E-value=6.4e-05 Score=50.98 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=85.7
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAF 90 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f 90 (149)
..+...|..+|.+++|.++..+-...+.-+.+...+..-++..|+.++...+|.+.-.+|...+....+-.. -.+...|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~-l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV-LRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce-eeccccc
Confidence 567788999999999999988877777777688889999999999999999999999888877765544321 3467789
Q ss_pred hhhcCCCCCcccHHHHHHHHHHh
Q 032008 91 KVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
+.++...+|+|+.++|+.+....
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhC
Confidence 99999999999999999988754
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.86 E-value=7.5e-05 Score=41.17 Aligned_cols=63 Identities=29% Similarity=0.651 Sum_probs=50.5
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHhhCcC----CCCceeHHHHHHHHhc
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNL-GE-RLSDEETEQMIREADLD----GDGLVSFEEFARMMMA 148 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 148 (149)
++..+|+.+.. +.+.||.++|..+|... +. ..+.+.+..++..+..+ ..+.+|++.|.++|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46778888855 78899999999999765 33 46888999999998654 4689999999999864
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.62 E-value=0.0011 Score=41.18 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhcc---CCCCCcccHHHHHHHHHh---h------
Q 032008 10 IAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVD---FDGNGSIDFLEFLTIMGR---K------ 77 (149)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~~~~---~------ 77 (149)
...|++...-+|+|++|.|..-|-...++.+ |..+-..-+..++-... ....+.+.---|.-.+.. -
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 3456777788899999999999999999999 77776555444432221 111221211111111100 0
Q ss_pred -----cccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh-------CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 78 -----MKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL-------GERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 78 -----~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
...-.++.+..+|..++..+.+.+|..|+..+++.- |.--+.-|...++... .+.+|.+..++...+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 112234689999999998888999999999999863 2222344555555554 467899998887654
Q ss_pred H
Q 032008 146 M 146 (149)
Q Consensus 146 l 146 (149)
+
T Consensus 164 Y 164 (174)
T PF05042_consen 164 Y 164 (174)
T ss_pred c
Confidence 3
No 98
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.59 E-value=2.3e-05 Score=45.77 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHH
Q 032008 42 DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRN 108 (149)
Q Consensus 42 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 108 (149)
........+.-.|..+|.+++|.|+..|+..+...+ ......+...++..|.|++|.||..|...
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344556677778899999999999999987776533 22224578888999999999999988754
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00038 Score=50.20 Aligned_cols=63 Identities=35% Similarity=0.627 Sum_probs=52.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGER---LSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
..+...|..+| +++|+++..++...+...+.. ...++++.++...+.|.+|.|++++|+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45677788998 899999999999999887543 2477889999999999999999999998654
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.51 E-value=0.00019 Score=30.32 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=14.6
Q ss_pred HHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 122 TEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+..+|..+|.+++|.|++.+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34455555555556666666655554
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.50 E-value=0.00052 Score=37.78 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhcCC-CCCHHHHHHHHhhccCC----CCCcccHHHHHHHHHhhc
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQDE-HPRKEEVQEMISEVDFD----GNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~ 78 (149)
++..+|..+.. +.+.|+.++|..+|...-+. ..+..++..++..+..+ ..+.++++.|..++....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 35678888855 78899999999999877333 35788888888887544 468899999988886543
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0011 Score=38.24 Aligned_cols=58 Identities=29% Similarity=0.600 Sum_probs=44.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHh------CC----CCCHHHHHHHHHh----hCcCCCCceeHHHHHHH
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNL------GE----RLSDEETEQMIRE----ADLDGDGLVSFEEFARM 145 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~ 145 (149)
..|.+.|.+++|.++--|+...+... |. -.++.++..++.. -|.|++|.|+|-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46899999999999999988887643 22 1345666665555 47889999999999864
No 103
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00062 Score=48.94 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=54.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+-+..-|+.+-+|-.|+|+-.--+.++.+.. +.-.++..||+..|.++||.+++.||+..+.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4466779999999999999999999988654 6778899999999999999999999999764
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=97.33 E-value=0.00035 Score=47.87 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=53.8
Q ss_pred ccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 79 KENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 79 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
.+..+..+-.+|..+|.|.+|.++..|++.+-.. -.+..++.+|...|...||.|+-.|++..+.
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 3444578889999999999999999999876654 4667899999999999999999999987654
No 105
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.30 E-value=0.00039 Score=29.30 Aligned_cols=27 Identities=44% Similarity=0.819 Sum_probs=17.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
+..+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345666777777777777776666553
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.92 E-value=0.029 Score=43.66 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=79.1
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCH-----HHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRK-----EEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+..++..+..++..|..+++...|.++.+++..+|-.+ |+.... +++..+....+....|.|++.+|...+..-
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 45678888999999999999999999999999999888 777664 345556666666677999999999998655
Q ss_pred ccc-CcHHHHHHHhhhhcCCCCCcccHHHHHH
Q 032008 78 MKE-NVSEELKEAFKVFDRDQDGFISAAELRN 108 (149)
Q Consensus 78 ~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 108 (149)
... .....+-..|..+-+++. ++..+|+..
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 443 333556667777755444 788888876
No 107
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0016 Score=50.59 Aligned_cols=135 Identities=24% Similarity=0.377 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc-----
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK----- 79 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----- 79 (149)
++..++.++..+|..+.++ +|.++-...+.+|. .-.+....+..+|...|.+.+|.++..+|...+.....
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~---~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILL---NSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhh---cCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 5677888888889998875 77888877777775 34556667888999999999999999999655422100
Q ss_pred --------------------------------------------------------------------------------
Q 032008 80 -------------------------------------------------------------------------------- 79 (149)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (149)
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence
Q ss_pred cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 80 ENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
+.....+..+|...|.+.+|.|+..+....+...| +....+..+|...+..+.|.+++++|.-.
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred hHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchh
Confidence 00113456789999999999999999999998855 78888999999999999999999987643
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=96.72 E-value=0.033 Score=41.81 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHHhhccc--CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhC-------
Q 032008 62 NGSIDFLEFLTIMGRKMKE--NVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGE--RLSDEETEQMIREAD------- 130 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d------- 130 (149)
.|.++|.+|..+....... ....++..+|..+.. +.+.++.++|..+|..... ..+.+.+..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 4677788777666554322 134677777777754 3357888888887776532 244555555544331
Q ss_pred cCCCCceeHHHHHHHHh
Q 032008 131 LDGDGLVSFEEFARMMM 147 (149)
Q Consensus 131 ~~~~g~i~~~ef~~~l~ 147 (149)
....+.++++.|..+|.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 11223478888877765
No 109
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.56 E-value=0.031 Score=42.49 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 032008 48 EEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIR 127 (149)
Q Consensus 48 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (149)
.-+..+|...|++.+|.+++.+-..++...........+...|+..+..+++.+...++..+........ ++..+|.
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~ 212 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFV 212 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHH
Confidence 3477889999999999999999998888777776667888899999999999999999999988776433 6666666
Q ss_pred hhCcCCCCceeHHHHHHHHh
Q 032008 128 EADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 128 ~~d~~~~g~i~~~ef~~~l~ 147 (149)
.+..+ .+.++.+++..++.
T Consensus 213 ~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 213 QYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHhCC-CCccCHHHHHHHHH
Confidence 66544 56677766666553
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.012 Score=42.69 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
+++++.+=+-.-|+.+-++..|.|+-.--++++.+. .+.-.++..+|...|-+.+|.+++.||...+....
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 466777777888999989999999988888888865 45667899999999999999999999998886554
No 111
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.49 E-value=0.28 Score=38.57 Aligned_cols=121 Identities=13% Similarity=0.328 Sum_probs=86.5
Q ss_pred cCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccC--CCC-----CcccHHHHHHHHHhhcccCcHHHHHHHhhhh
Q 032008 21 DKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDF--DGN-----GSIDFLEFLTIMGRKMKENVSEELKEAFKVF 93 (149)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~--~~~-----g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~ 93 (149)
-.+..|.|....+..++.+- -...-+...+..... +.. ...++..|..++..+++. .++..+|+.+
T Consensus 158 qvn~~grip~knI~k~F~~~----k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR---~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD----KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR---PEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcC----CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc---hhHHHHHHHh
Confidence 35678999988888877533 222444444444321 222 235566677777766655 5799999999
Q ss_pred cCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCcCC----CCceeHHHHHHHHhc
Q 032008 94 DRDQDGFISAAELRNVMMNL----------GERLSDEETEQMIREADLDG----DGLVSFEEFARMMMA 148 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~ 148 (149)
..++.-++|.+++..++..- ...+.++.+..+++.+..|. .|.++-+-|++++..
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 99888999999999999853 23456788999999998764 689999999998753
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.47 E-value=0.011 Score=43.62 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCc
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENV 82 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 82 (149)
+++++++..+..|..+|.++.|.++..+....+... +..++...+..+....+..-.|.+...+|..++........
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~ 663 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCT 663 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCCh
Confidence 688999999999999999999999999999999999 77899999999999999888999999999998877655543
No 113
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.41 E-value=0.029 Score=41.95 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHH
Q 032008 30 MKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAEL 106 (149)
Q Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 106 (149)
...|..+++...-...+..-+.++|+..|.+.+|.|++.+++..+........-+.+..+|+.+|++++ ....+++
T Consensus 537 ~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 537 YAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 334444444332222233346778888888888888888888888777777666778888888888887 7777776
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.98 E-value=0.045 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 116 RLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 116 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+..++.++++|.+++..+.+.+|+.|..+++.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 35678999999999988888999999998875
No 115
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.013 Score=45.76 Aligned_cols=137 Identities=19% Similarity=0.320 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc----
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK---- 79 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---- 79 (149)
++++.....+..+|..+|..+.|.|+-.+-..++... .+..+.+..+|...+..+.|.++...|...++....
T Consensus 4 ~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~ 80 (847)
T KOG0998|consen 4 GLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSG 80 (847)
T ss_pred CCCCCccchHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhccccccccccCCccccccccccchHhhhhhcc
Confidence 3444555778889999999999999999998888744 566778889999999999999999999554432100
Q ss_pred ------------------------------c--C---------c---HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC
Q 032008 80 ------------------------------E--N---------V---SEELKEAFKVFDRDQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 80 ------------------------------~--~---------~---~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
. . . ...+..+|+.+.+. .|+++....+.++..-+
T Consensus 81 ~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~- 158 (847)
T KOG0998|consen 81 RELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK- 158 (847)
T ss_pred cCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC-
Confidence 0 0 0 02466778888765 88999998888888654
Q ss_pred CCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 116 RLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 116 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
+....+..+|...|.+.+|.++..||.-.+
T Consensus 159 -Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 159 -LPSDVLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred -CChhhhccccccccccccCCCChhhhhhhh
Confidence 667778899999999999999999997655
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.65 E-value=0.17 Score=28.28 Aligned_cols=61 Identities=11% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNL-------G----ERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+.++.+|+.+ .|.+|.++...+..+|+.+ | ....+..++.+|.... ....|+.++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 4577788888 5788889988888888753 1 1125667788888773 445799999998775
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.035 Score=42.52 Aligned_cols=66 Identities=17% Similarity=0.373 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 032008 6 TEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
+......++.+|..+|+..+|+++-.+-+.+|-.. .++...+..+|...|.++||+++.+||+-.|
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 34455678899999999999999998888888655 4556678999999999999999999997655
No 118
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.52 E-value=0.032 Score=41.73 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHH
Q 032008 65 IDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEE 141 (149)
Q Consensus 65 i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 141 (149)
+++..|...+....+.... .-..++|+.+|.+++|.++..++...|..+...-.-+.+..+|..++.+.+ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 3444444444433333322 456789999999999999999999999988665666778899999998876 555443
No 119
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.47 E-value=0.17 Score=31.42 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=46.6
Q ss_pred HHHHhhh---cCCCCCCccHHHHHHHHHHhc--CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 14 QEAFCMI---DKDSDGLITMKDLATVIQSAQ--DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 14 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+.+|..| -..+...|+-..|..+++.+. +..++..++.-+|.++...+..+|+|++|+..+..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3445555 345567899999999999983 224788899999999876677789999999888654
No 120
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.39 E-value=0.054 Score=37.64 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=72.8
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHH---HHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHH
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATV---IQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELK 87 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~---l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 87 (149)
.+|+..|..+=.+.++......+... +... -+++=...+.=+|..+|.+.++.++..|+... ........++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s-~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTS-ILPICKDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccc-cCcchhhhhhhhhhccccccccccCHHHhhhh----hccCchhHHH
Confidence 35677777664444333333222222 2111 22334567788999999999999999997544 3444556789
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
-.|...|..++|.|+-.|....+...+ .....++..+
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 999999999999999999998888765 3344444444
No 121
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.35 E-value=0.039 Score=45.18 Aligned_cols=58 Identities=22% Similarity=0.496 Sum_probs=50.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
..|+.+|+++.|.|+..+|...+... .+.++.+++.++.....|.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 34899999999999999999998863 35789999999999999999999999998754
No 122
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.11 Score=30.26 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHhhhcCCCCCCccHHHHHHHHHHh
Q 032008 15 EAFCMIDKDSDGLITMKDLATVIQSA 40 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~ 40 (149)
..|...|-++++.++--|+..++...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~ 96 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHT 96 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHH
Confidence 45777788888888776766666544
No 123
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.23 E-value=0.05 Score=40.33 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=56.8
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
...-|..+|.++.|+++..++..+++..+.+...+.+...++..+.+..|.+...||.+++.
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 45669999999999999999999999999889999999999999988899999999998865
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.21 E-value=0.25 Score=30.61 Aligned_cols=54 Identities=11% Similarity=0.360 Sum_probs=37.3
Q ss_pred cCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 94 DRDQDGFISAAELRNVMMNLG---ERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
-......++-..|..+++..+ ..++...+.-+|..+-......|+|++|..+|.
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344556788888888888764 357788888888887655556688888888764
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.04 E-value=0.024 Score=39.00 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=38.9
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHHHhhccc-CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 50 VQEMISEVDFDGNGSIDFLEFLTIMGRKMKE-NVSEELKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 50 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
+.-.|..+|.+.++.|+..||..+-..+... ......+.+|+..|.|+|..||..|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4445666777777777766665543333222 22255667777777777777777777766654
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.70 E-value=0.036 Score=38.19 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=49.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNLGE-RLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
.+...|..+|.|+++.|...|+..+-.-+-. .-.....+.++...|.|+|.+||++|+...|.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 4566799999999999999987765444321 22456788899999999999999999988764
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.93 E-value=0.18 Score=34.74 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=43.4
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhC-----CCCCH-----------HHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLG-----ERLSD-----------EETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~-----~~~~~-----------~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
...|...|.|++|+++..|+..++..-- ..-.+ .....++..+|.|.+.-||.+||+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 4568888999999999999988876431 11111 11345688899999999999999864
No 128
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.55 E-value=0.31 Score=38.31 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=52.8
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSD-----EETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.+++..|+.++....|.++.+++...|...|+.... +++..+....|++..|.+++.+|.+.|.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 578889999999999999999999999999987763 33455555666677799999999987753
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=93.51 E-value=1.4 Score=33.64 Aligned_cols=88 Identities=9% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCCccHHHHHHHHHHhc-CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC--cHHHHHHHhhhh-------
Q 032008 24 SDGLITMKDLATVIQSAQ-DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN--VSEELKEAFKVF------- 93 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~f~~~------- 93 (149)
+.|.+++++|..+.+.+. .....+.++..+|..+..+ .+.++.++|..++....... ..+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 458999999988777662 1233788999999999654 46899999999997765532 223444443322
Q ss_pred cCCCCCcccHHHHHHHHHH
Q 032008 94 DRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~ 112 (149)
...+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 1122346899999888863
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.53 E-value=0.39 Score=36.00 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCC-CHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHP-RKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
+++.-++.+..+|.++|.+++|.++..|+..++... ...+ ....-. .....+..|.+++.-|+........
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~-P~~pW~~~~~~---~~t~~~~~G~ltl~g~l~~WsL~Tl 380 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA-PGSPWTSSPYK---DSTVKNERGWLTLNGFLSQWSLMTL 380 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC-CCCCCCCCccc---ccceecccceeehhhHHHHHHHHhh
Confidence 678888999999999999999999999999999888 3333 111000 0112236788999999877654433
No 131
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.35 E-value=1.4 Score=34.77 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=86.2
Q ss_pred hhHHHHHH-HHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHH-HHHHHHhhccCCCCCcccHHHHHHHHHhhcccCc
Q 032008 5 LTEDQIAE-FQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKE-EVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENV 82 (149)
Q Consensus 5 l~~~~~~~-l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 82 (149)
+.+.++.+ +++.+..+|......|+..+++.+|... .+..+.. .+.+-|... ....+.++|++|..+....+....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qv-n~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQV-NFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccc-eEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccc
Confidence 35566665 4566677777677789999999988877 5554433 222333222 335678999999988877766554
Q ss_pred HHHHHHH-----hhhhcCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhhCcC-----CCCceeHHHHHHHHh
Q 032008 83 SEELKEA-----FKVFDRDQDGFISAAELRNVMMNLGERLS---DEETEQMIREADLD-----GDGLVSFEEFARMMM 147 (149)
Q Consensus 83 ~~~~~~~-----f~~~D~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~ 147 (149)
...+... ...-+...--.++..+|.++|........ ...++.++..+-.| ....+++.||+.+|-
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 4332222 22222223357999999999886432222 22345555555322 245799999999874
No 132
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.91 E-value=1 Score=27.39 Aligned_cols=69 Identities=12% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc-------cCCCCCcccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCC
Q 032008 26 GLITMKDLATVIQSAQDEHPRKEEVQEMISEV-------DFDGNGSIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQ 97 (149)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-------d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~ 97 (149)
+.|+.++|.++- ....+ +...+..++..+ ..+..+.|+|+-|..+|...+-...+ +-..+.|..|-...
T Consensus 6 ~~lsp~eF~qLq-~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQ-KYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHH-HHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHH-HHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 566777777633 33122 233444444444 22345579999999999888776655 55677888886544
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=91.70 E-value=1.5 Score=24.95 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCC---CCCcccHHHHHHHH
Q 032008 10 IAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFD---GNGSIDFLEFLTIM 74 (149)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~ 74 (149)
...+.+.|..+.. +|.++.+.|.+++ |..-+.+-..++|..+-.. ....|+.+|+..+.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW 90 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFW 90 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHH
Confidence 4455666666655 5677777776655 5555555566666555321 12445555554444
No 134
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.47 E-value=0.24 Score=26.23 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=38.4
Q ss_pred cHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc----C---CCCceeHHHHHHH
Q 032008 82 VSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADL----D---GDGLVSFEEFARM 145 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~---~~g~i~~~ef~~~ 145 (149)
+.+.+..+|+.+ .++.++||.++|+..|..- .++.+.+.+.. + ..|.++|..|...
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 347889999999 7888999999999876532 23444444432 1 2367899888753
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.37 E-value=0.45 Score=32.85 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=44.1
Q ss_pred HHhhhcCCCCCCccHHHHHHHHHHhc----CCCCCHHH-----------HHHHHhhccCCCCCcccHHHHHHHHHhhccc
Q 032008 16 AFCMIDKDSDGLITMKDLATVIQSAQ----DEHPRKEE-----------VQEMISEVDFDGNGSIDFLEFLTIMGRKMKE 80 (149)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 80 (149)
.|...|.|++|.++-.++..++..-. ...-...+ -..++..+|.+.+.-|+.++|+..-......
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef~ 328 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEFN 328 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcccC
Confidence 56677888999999988887765442 22111111 1346667788888899999988776555444
Q ss_pred Cc
Q 032008 81 NV 82 (149)
Q Consensus 81 ~~ 82 (149)
.+
T Consensus 329 ~p 330 (442)
T KOG3866|consen 329 PP 330 (442)
T ss_pred Cc
Confidence 43
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=91.29 E-value=1.8 Score=32.80 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=14.0
Q ss_pred CHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 46 RKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 46 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
+++++..+|..+.. ++.++.++|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~ 51 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEV 51 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHh
Confidence 44455555555432 1345555555554433
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.61 E-value=1.8 Score=32.87 Aligned_cols=61 Identities=15% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCc-CCCCceeHHHHHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGE--RLSDEETEQMIREADL-DGDGLVSFEEFARMM 146 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l 146 (149)
.++..+|..+.. .+.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 344444444432 234555555555544321 1233344444444321 123345555555544
No 138
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=90.49 E-value=1.4 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
++-+++..++...|..++++++..++.+-+..+--.++-..+.++|
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445677777777777777777777777554433344444444444
No 139
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=89.42 E-value=0.86 Score=38.16 Aligned_cols=57 Identities=25% Similarity=0.458 Sum_probs=47.0
Q ss_pred HHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 032008 16 AFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
-|..+|+++.|.|+..+|...+..- -..+..++.-++.-...++...++|.+|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4678899999999999999988744 34566778888888888899999999997654
No 140
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.29 E-value=3 Score=31.85 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=34.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhC-------cCCCCceeHHHHHHHHh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGE---RLSDEETEQMIREAD-------LDGDGLVSFEEFARMMM 147 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~l~ 147 (149)
.++..+|..+..++ +.++.++|..+|..... ..+.+.+..++..+- .-..+.++++.|..+|.
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 56666776664333 67777777777766531 124444455554331 11233477777777664
No 141
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.77 E-value=0.62 Score=28.32 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC-------CCCceeHHHHHHHHhcC
Q 032008 97 QDGFISAAELRNVMMNLGERLSDEETEQMIREADLD-------GDGLVSFEEFARMMMAF 149 (149)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l~~~ 149 (149)
..+.+|..||.+.-+...+ +...+..++..+..+ ..+.|+|+-|..+|..|
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 4567788888777665432 334566666666433 24578999998888653
No 142
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.24 E-value=0.71 Score=27.02 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 032008 45 PRKEEVQEMISEVDFDGNGSIDFLEFLTIMG 75 (149)
Q Consensus 45 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 75 (149)
++.++++.+|..+-.+..|+|.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5788999999999999999999999987765
No 143
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=0.88 Score=32.26 Aligned_cols=59 Identities=29% Similarity=0.523 Sum_probs=41.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhCcCCCCceeHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEE-TEQMIREADLDGDGLVSFEEF 142 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef 142 (149)
+.++++|+.+|+.+.|+|+.+-+..++...+..+++.+ +..+-...|+..-|.|-..+|
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 67999999999999999999999999998875454433 333333445555555444433
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.48 E-value=4.1 Score=22.86 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCC----------CCCHHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDE----------HPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~----------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
.+++-+|+.+ .+.+|.++...|..+|..+..+ ...+..++..|... .....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4677788888 6678999999998888766210 01344455555544 23455777777766643
No 145
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=86.28 E-value=4.7 Score=23.37 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
+..+|-.++..++...+..++..+|..+|.....+.++.++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 345666777778888999999999999999999999999999885
No 146
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=84.97 E-value=5.2 Score=22.68 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCCccHHHHHHHHHHhcC-CCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCCccc
Q 032008 25 DGLITMKDLATVIQSAQD-EHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDGFIS 102 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~ 102 (149)
||.++..|...+-..+.. ..++..+...+...+........++.+|...+.....+... ..+...|+..-. ||.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCC
Confidence 677887775554433212 34566667777766665555667788887776654422222 334445555533 45666
Q ss_pred HHHHH
Q 032008 103 AAELR 107 (149)
Q Consensus 103 ~~e~~ 107 (149)
..|-.
T Consensus 91 ~~E~~ 95 (104)
T cd07313 91 EYEEH 95 (104)
T ss_pred HHHHH
Confidence 66553
No 147
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=84.57 E-value=4.9 Score=23.22 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=30.7
Q ss_pred ccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh---CC-CCCHHHHHHHHHhhC
Q 032008 57 VDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL---GE-RLSDEETEQMIREAD 130 (149)
Q Consensus 57 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~~-~~~~~~~~~~~~~~d 130 (149)
+|+..+..|++++...++..-. -|+..|.....-||..-+.+++... |. -++...+..+++.++
T Consensus 12 YDT~tS~YITLedi~~lV~~g~----------~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREGR----------EFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cCCCccceeeHHHHHHHHHCCC----------eEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 4666667777777666654211 1444444333335554444444332 11 134444555555554
No 148
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.87 E-value=3.7 Score=31.78 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=10.3
Q ss_pred HhhhhcCCCCCcccHHHHHHHHH
Q 032008 89 AFKVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~ 111 (149)
++...|+++.|++..+++...+.
T Consensus 66 ~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 66 IMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred hhhhccccccceeeecchhHHHH
Confidence 34444444444444444444443
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=83.58 E-value=10 Score=29.00 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=45.2
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhcCC-CCCHHHHHHHHhhccCC----CCCcccHHHHHHHHHhh
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQDE-HPRKEEVQEMISEVDFD----GNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~ 77 (149)
++..+|..+.. ++.|+.++|..+|...-+. ..+.+.+..++..+... ..|.++.+.|..++...
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34445666543 3589999999999888332 24566788888887643 34679999999988543
No 150
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.42 E-value=1.3 Score=23.49 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=30.0
Q ss_pred CcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 63 GSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 63 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
--++|..+...+....++.....+...|..+ +.+.|+.+||...++..
T Consensus 7 p~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 3466666666666666554434444444444 56788888888888764
No 151
>PLN02222 phosphoinositide phospholipase C 2
Probab=82.59 E-value=9.6 Score=29.21 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHHHHhcCC-CCCHHHHHHHHhhccC-CCCCcccHHHHHHHHHhh
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVIQSAQDE-HPRKEEVQEMISEVDF-DGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~ 77 (149)
.+..+|..+.. ++.++.++|..+|...-+. ..+.+.+..++..+.. ...+.++++.|..++...
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45566666643 4799999999999988332 3467778888877642 245679999999998653
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=82.33 E-value=4.1 Score=19.42 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcC-C-CCCCccHHHHHHHHHHh
Q 032008 8 DQIAEFQEAFCMIDK-D-SDGLITMKDLATVIQSA 40 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~-~-~~g~i~~~e~~~~l~~~ 40 (149)
..+..+..+|.+|.. + ....++..||+.++..-
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 456677888888863 2 34689999999988765
No 153
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=82.15 E-value=12 Score=29.49 Aligned_cols=130 Identities=11% Similarity=0.122 Sum_probs=81.5
Q ss_pred HHHHHhhhcCCCC-CCccHHHHHHHHHHh-------cCCCCCHH-----HHHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 13 FQEAFCMIDKDSD-GLITMKDLATVIQSA-------QDEHPRKE-----EVQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 13 l~~~f~~~d~~~~-g~i~~~e~~~~l~~~-------~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
...+|..++-.++ ..+...+....|... .|...... -+.-++..+|...+|.|..-+|...+..++.
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck 501 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCK 501 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhc
Confidence 3456777665443 445554444433332 12222211 1466788999999999999999888888888
Q ss_pred cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHH-------Hh-------CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 80 ENVSEELKEAFKVFDRDQDGFISAAELRNVMM-------NL-------GERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 80 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~-------~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
....+.++.+|..+-.++.-++ .-.+...|. .+ |.++.+ -++.+|.-. ++...|+...|+..
T Consensus 502 ~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~~v--~~~pei~~~~f~dw 577 (966)
T KOG4286|consen 502 AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQFV--NNKPEIEAALFLDW 577 (966)
T ss_pred chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHHhc--CCCCcchHHHHHHH
Confidence 7788899999999976666554 444444433 22 234444 456667733 44557888888765
Q ss_pred H
Q 032008 146 M 146 (149)
Q Consensus 146 l 146 (149)
+
T Consensus 578 ~ 578 (966)
T KOG4286|consen 578 M 578 (966)
T ss_pred h
Confidence 4
No 154
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=81.72 E-value=6.9 Score=21.67 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 032008 64 SIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 64 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 111 (149)
-|.+.+|...+...-+.....+....=..+|.-.+|+||.-||.-+.+
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 355555555555444444333333333445555555555555544443
No 155
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=80.09 E-value=8.1 Score=21.42 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=37.5
Q ss_pred CCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 26 GLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
..||.+||....+.. +.++++++...+...+-...-.-.+-++=..++.....
T Consensus 13 n~iT~~eLlkyskqy-~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 13 NNITAKELLKYSKQY-NISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred hcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 568899999988888 99999999998888875554444455554444444333
No 156
>PLN02230 phosphoinositide phospholipase C 4
Probab=79.96 E-value=16 Score=28.22 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=44.9
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCC---CCCHHHHHHHHhhccC-------CCCCcccHHHHHHHHHh
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDE---HPRKEEVQEMISEVDF-------DGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~ 76 (149)
.++..+|..+..++ +.|+.++|..+|... +. ..+.+.+..++..+.. -+.+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45677788885444 799999999999988 52 2355666666654321 23456999999998854
No 157
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=79.82 E-value=8.3 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.||.+||.+..+..++.++++.+..+...+-
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 3555566666665566666555555555543
No 158
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=79.23 E-value=7.1 Score=27.69 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 98 DGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 98 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
.|.||++|-...++.......++.++.+++.++ ||.+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 466777777777666544445566677777765 7778887654
No 159
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=79.11 E-value=11 Score=22.20 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
..+|-.+...++..+|.+++..+|...|..+....+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34455555667778999999999999999999988888888885
No 160
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=78.34 E-value=7.8 Score=28.66 Aligned_cols=96 Identities=18% Similarity=0.307 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHH-HHHHHHhh--cc--CCCCCcccHHHHHHHHHhhcccCc
Q 032008 8 DQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKE-EVQEMISE--VD--FDGNGSIDFLEFLTIMGRKMKENV 82 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~--~d--~~~~g~i~~~ef~~~~~~~~~~~~ 82 (149)
.+...+..++ .+.....+.-+.+||.+.+... .|... .+..++.. .. ....+.+.++..++++....---+
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~---~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD 361 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEV---NPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFD 361 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhc---CchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhC
Confidence 3344566666 6666667788899999988855 22221 22222211 11 112445667777776655443333
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCC
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMMNLGERL 117 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~ 117 (149)
.+.-.-+|+.+. .|+.++..+|..+
T Consensus 362 ~ERSD~VyKiLn----------KlK~v~st~~~~V 386 (445)
T PF13608_consen 362 AERSDCVYKILN----------KLKGVFSTMGQDV 386 (445)
T ss_pred chhhHHHHHHHH----------HHHHHHhccCCCc
Confidence 344444455443 3666666666443
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=77.93 E-value=2.8 Score=22.32 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK 79 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 79 (149)
+-++++..+...+. ..++......+...++.-..++|+-++|+..+....+
T Consensus 6 sp~~~F~~L~~~l~----~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALS----KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34566555555554 3345555555555555446778888888888876665
No 162
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=2.9 Score=29.81 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHH-HHHHHHhhccCCCCCcccHHHHHH
Q 032008 11 AEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKE-EVQEMISEVDFDGNGSIDFLEFLT 72 (149)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~ 72 (149)
.+++++|+.+|+.++|.|+-+.+...+... +..++++ .+...-..++...-|-|-..+|..
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 578899999999999999999999999888 6444444 444444555666666555555443
No 163
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=77.52 E-value=10 Score=21.06 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHH
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEF 142 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 142 (149)
.|++.+|.+.|.....-....+..++=.-+|..++|.||.=||
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 3455555555444422222233334444444444445544444
No 164
>PLN02223 phosphoinositide phospholipase C
Probab=76.95 E-value=16 Score=27.68 Aligned_cols=65 Identities=6% Similarity=-0.021 Sum_probs=39.0
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHhhCcC--------CCCceeHHHHHHHHhc
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVM---MNL-G-ERLSDEETEQMIREADLD--------GDGLVSFEEFARMMMA 148 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l~~ 148 (149)
++++..+|..+. .+.|.++.+.+..++ ... | ...+.+..+.++..+-.. ..+.++++.|.++|.+
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 367777777773 566777777777777 332 2 234455555555543211 2245888888887753
No 165
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=76.77 E-value=40 Score=27.57 Aligned_cols=80 Identities=9% Similarity=0.254 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc----------cCcHHHHHHHhhhhcCCC-
Q 032008 29 TMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK----------ENVSEELKEAFKVFDRDQ- 97 (149)
Q Consensus 29 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----------~~~~~~~~~~f~~~D~~~- 97 (149)
+.+.|..++..+ -.+.++.++|..+..++...++.+++..+++...+ +..+..+..+...+-++.
T Consensus 206 ~~e~f~~~l~kl----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred cHHHHHHHHHhc----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 344456666544 34568999999998888889999999999976543 333466778888887665
Q ss_pred ---CCcccHHHHHHHHHH
Q 032008 98 ---DGFISAAELRNVMMN 112 (149)
Q Consensus 98 ---~g~i~~~e~~~~l~~ 112 (149)
.|.++.+-|...+..
T Consensus 282 ~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhccccchhhhHHHhhC
Confidence 588999999888874
No 166
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=75.07 E-value=10 Score=20.01 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 032008 28 ITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
++.+++..++... +..++..++..++.+-+..+--..+-..+..++
T Consensus 14 l~d~~m~~if~l~-~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALA-GFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHc-CCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445677777666 777888888777776554433344444444443
No 167
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=74.67 E-value=3.1 Score=25.02 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=40.1
Q ss_pred CCCCccHHHHHHHHHHh-cCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCCcc
Q 032008 24 SDGLITMKDLATVIQSA-QDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDGFI 101 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i 101 (149)
-||.++.+|...+...+ .....+......+...+........++.+++..+......... ..+..++...-.|| .+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG--~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADG--EI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTT--C-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC--CC
Confidence 47888888876655444 1333344455555555544333457777777665543332222 44556666666554 44
Q ss_pred cHHH
Q 032008 102 SAAE 105 (149)
Q Consensus 102 ~~~e 105 (149)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 4433
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=74.36 E-value=5.6 Score=29.03 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 49 EVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 49 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
.++.+-+.+|.+.+|.|+.+|=-.++..-+
T Consensus 69 Air~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 69 AIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred HHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 344444444444445454444444443333
No 169
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=74.18 E-value=11 Score=25.48 Aligned_cols=50 Identities=12% Similarity=0.320 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccC
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDF 59 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~ 59 (149)
++||..|.+.+.+++..++. .+|.++..++..-+ .+++..+++.++++..
T Consensus 175 ~tLSySEleAv~~IL~~L~~-~egrlse~eLAerl------GVSRs~ireAlrkLE~ 224 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDG-NEGLLVASKIADRV------GITRSVIVNALRKLES 224 (251)
T ss_pred HhccHhHHHHHHHHHHHhcc-ccccccHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 46888888899999988855 25888888888754 3456667777776643
No 170
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=73.17 E-value=8.1 Score=23.91 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcC----CCCC-CccHHHHHHHHHHhc---CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcc---
Q 032008 11 AEFQEAFCMIDK----DSDG-LITMKDLATVIQSAQ---DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMK--- 79 (149)
Q Consensus 11 ~~l~~~f~~~d~----~~~g-~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--- 79 (149)
..+.+.|+.+.. ..+| .|+-..+..++..+. +-.++.-+..-+|..+.-...+.++|++|...+..+..
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 344555555533 2233 566777888888772 33455556667777776666778999999666544332
Q ss_pred --cCcHHHHHHHhhhhc
Q 032008 80 --ENVSEELKEAFKVFD 94 (149)
Q Consensus 80 --~~~~~~~~~~f~~~D 94 (149)
....+.+..+.+.+-
T Consensus 92 k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLLA 108 (180)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 222355666655553
No 171
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=72.63 E-value=11 Score=19.62 Aligned_cols=22 Identities=9% Similarity=0.536 Sum_probs=16.1
Q ss_pred hhhcCCCCCcccHHHHHHHHHH
Q 032008 91 KVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
+.+|+....+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4567777778888887777763
No 172
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=72.59 E-value=17 Score=21.27 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=35.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.+|-.+...++..+|.+++..+|+..|..+....+..+.+.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4455555667778999999999999999999888888888775
No 173
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=72.51 E-value=4.3 Score=22.18 Aligned_cols=35 Identities=14% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCC
Q 032008 24 SDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDG 61 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 61 (149)
..|+||++++..+|.. ...+...+..++..+...|
T Consensus 18 ~~G~lT~~eI~~~L~~---~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE---DDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHSS-BHHHHHHH-S----S---HHHHHHHHHHHHTT-
T ss_pred hcCcCCHHHHHHHcCc---cCCCHHHHHHHHHHHHHCC
Confidence 3578888888888863 3466777888877765443
No 174
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.22 E-value=19 Score=21.66 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=37.2
Q ss_pred HHHHHHhhhhcCCC--CCcccHHHHHHHHHHhC-------CCCC-----------HHHHHHHHHhhCcCCCCceeHHHHH
Q 032008 84 EELKEAFKVFDRDQ--DGFISAAELRNVMMNLG-------ERLS-----------DEETEQMIREADLDGDGLVSFEEFA 143 (149)
Q Consensus 84 ~~~~~~f~~~D~~~--~g~i~~~e~~~~l~~~~-------~~~~-----------~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
..+..+|+....+. +..++..++..++..+. .... +-.+..++..+|.++.|.|+.-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 45566666655433 35688888777776542 1111 1235667888999999999998887
Q ss_pred HHHh
Q 032008 144 RMMM 147 (149)
Q Consensus 144 ~~l~ 147 (149)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 175
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.96 E-value=2.9 Score=35.68 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHH---HHHHHHhhccCCCCCcccHHHHHHHHH
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKE---EVQEMISEVDFDGNGSIDFLEFLTIMG 75 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~---~~~~~~~~~d~~~~g~i~~~ef~~~~~ 75 (149)
.|++.+.+.+.++|..+|++..|.|....+..++..+ ..++.-. .-+-+-..+....++.|++.+-+-.+.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L-~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL-DPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc-CCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHH
Confidence 5889999999999999999999999999999999888 3332211 112222233445778888888766554
No 176
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=71.54 E-value=10 Score=21.44 Aligned_cols=79 Identities=18% Similarity=0.010 Sum_probs=42.5
Q ss_pred CCCcccHHHHHHHHHhhcc--cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCcCCCCce
Q 032008 61 GNGSIDFLEFLTIMGRKMK--ENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETEQMIREADLDGDGLV 137 (149)
Q Consensus 61 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i 137 (149)
.||.++-.|-..+-..... ..+.+....+...+........+..++...+.... ...-...+..+|...- -||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 3788888886544332111 22345556666666655566677888877776532 1111222334444443 34666
Q ss_pred eHHH
Q 032008 138 SFEE 141 (149)
Q Consensus 138 ~~~e 141 (149)
+..|
T Consensus 90 ~~~E 93 (104)
T cd07313 90 DEYE 93 (104)
T ss_pred CHHH
Confidence 6655
No 177
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.50 E-value=5.9 Score=15.62 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.7
Q ss_pred CCCCcccHHHH
Q 032008 96 DQDGFISAAEL 106 (149)
Q Consensus 96 ~~~g~i~~~e~ 106 (149)
|++|.|+.-++
T Consensus 3 N~DG~vna~D~ 13 (21)
T PF00404_consen 3 NGDGKVNAIDL 13 (21)
T ss_dssp TSSSSSSHHHH
T ss_pred CCCCcCCHHHH
Confidence 44444444433
No 178
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=71.00 E-value=28 Score=24.87 Aligned_cols=62 Identities=11% Similarity=0.297 Sum_probs=43.3
Q ss_pred HHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 51 QEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 51 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
..++..+|..+.|+++.---...+...+.+...+.++.+|..+. +..|.+..-.+.++++..
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 44556678888888776655555555666666678888888885 567777777777777654
No 179
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=70.39 E-value=1.9 Score=27.94 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=37.1
Q ss_pred hhhhcC-CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 90 FKVFDR-DQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 90 f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
|-.+|. ..+|++|..|+.-+ ++ ..-..+.....+|...|.|+||.|+++|+-..
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~a-p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RA-PLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred eccccCCCccccccccccccc-cC-CcccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 444554 35889998887532 21 11123556788999999999999999998654
No 180
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=69.34 E-value=15 Score=20.11 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC-CCCceeHHHHHHHH
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREADLD-GDGLVSFEEFARMM 146 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 146 (149)
-..+++.+.|. |...+.+.+...+..++.+ --|.++.+|+.++|
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 34667777774 7778899999999998643 45679999998765
No 181
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=68.73 E-value=11 Score=19.74 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCC
Q 032008 97 QDGFISAAELRNVMMNLGERLSDEETEQMIREADLDG 133 (149)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (149)
.++.++..++.+.+...|..++++.+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888876443
No 182
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=68.66 E-value=11 Score=27.66 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=15.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 111 (149)
+.++.+-+.+|-|++|.|+.+|=..+++
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHH
Confidence 4455555555555666665555555554
No 183
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=68.34 E-value=15 Score=18.90 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 99 GFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
-.+|.+|+...+..++..++..++-.+|..+-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35788888888888888888888888887764
No 184
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=67.31 E-value=15 Score=23.72 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=22.8
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 032008 94 DRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADL 131 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (149)
..+.+|+++.+++.+.+..-+..++.+++..+...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45678888888888888876767788888888776543
No 185
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=66.91 E-value=27 Score=21.50 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHhhc-------cc-CcH----HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh-
Q 032008 62 NGSIDFLEFLTIMGRKM-------KE-NVS----EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIRE- 128 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~-------~~-~~~----~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~- 128 (149)
...|++++|...+.... +. ... .....+|..+ |...=+.+-+.++|+.++++++..++..
T Consensus 46 Ge~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g 118 (145)
T PF13623_consen 46 GEKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQG 118 (145)
T ss_pred CEEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcC
Confidence 34588888877664432 11 111 1123333333 3333345556677888888888887711
Q ss_pred ---------hCcCCCCceeHHHHHHHH
Q 032008 129 ---------ADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 129 ---------~d~~~~g~i~~~ef~~~l 146 (149)
+-.+..|..+...+.+++
T Consensus 119 ~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 119 TNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CCchhhhccccCcccCCcCHHHHHhhC
Confidence 223567888888776653
No 186
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=64.14 E-value=55 Score=24.02 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=52.4
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCC---cc
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDG---FI 101 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g---~i 101 (149)
...+.+..|.+.|... ....+.-+..++-..+|...++.|+-=||-.+-+...+- ..+.+-|+.+-.-+-| ++
T Consensus 188 k~ivPW~~F~q~L~~~-Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw---~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKV-HPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW---KTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhc-CCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH---HHHHHhhhhhhccCCceeEEe
Confidence 3477788888888877 444444455566666777888887755554333322221 2344455555555656 47
Q ss_pred cHHHHHHHHHHh
Q 032008 102 SAAELRNVMMNL 113 (149)
Q Consensus 102 ~~~e~~~~l~~~ 113 (149)
|++|+.+-|++.
T Consensus 264 TYDEVk~RLqk~ 275 (563)
T KOG1785|consen 264 TYDEVKARLQKY 275 (563)
T ss_pred eHHHHHHHHHHH
Confidence 888888888754
No 187
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.05 E-value=21 Score=26.07 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=43.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHH
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFA 143 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
.+..+|-.+.+ -+|+||-..-..-+- +.++....+-.+|...|.|++|.++-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 36677777754 467887665555444 445778889999999999999999999995
No 188
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=61.79 E-value=29 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=19.1
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 96 DQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 96 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
+.+|++..+++.+.+..-+..++.+.+.++...-+
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 45566666666665554344455555555554433
No 189
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.41 E-value=33 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=19.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHH
Q 032008 85 ELKEAFKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 85 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
.+...+..||++++|.|+.-.++..+-.
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3567789999999999999888877654
No 190
>PF13551 HTH_29: Winged helix-turn helix
Probab=60.74 E-value=29 Score=19.63 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHH-HHhcCCCCCHHHHHHHHh
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVI-QSAQDEHPRKEEVQEMIS 55 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~~ 55 (149)
+++++.+.+.+.+......+....+...+...+ ....+..++...+..++.
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~ 109 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILK 109 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHH
Confidence 445555555555554333322345555555533 333355555555555543
No 191
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=60.54 E-value=32 Score=20.09 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 032008 14 QEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMG 75 (149)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 75 (149)
...|-.+...++...+..+++.+|..+ |.....+.++.++..+ .|+ +.+|.+..-+
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~visel----~GK-~i~ElIA~G~ 59 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLVLSEL----KGK-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHHHHHh----cCC-CHHHHHHHhH
Confidence 345556666677788889999999999 9999999999998887 444 6777765443
No 192
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=60.18 E-value=33 Score=20.19 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=32.8
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 89 AFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 89 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
+|-..-..++..+|.+++..+|...|..+....+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344444456677999999999999999888888888887775
No 193
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=56 Score=22.42 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHHHHHHHhhh-cCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHh
Q 032008 10 IAEFQEAFCMI-DKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR 76 (149)
Q Consensus 10 ~~~l~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 76 (149)
..++...|..+ |+.-+..|..+.+..++..+ |+.+..-.+--+--.+....-+..+..+|+..+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dl-g~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDL-GVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHh-CCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 34566677766 55555789999999999988 77666544333334455555678888888776543
No 194
>PLN02223 phosphoinositide phospholipase C
Probab=57.64 E-value=79 Score=24.27 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCCCCCCccHHHHHHHH---HHhcC-CCCCHHHHHHHHhhccCC--------CCCcccHHHHHHHHHh
Q 032008 12 EFQEAFCMIDKDSDGLITMKDLATVI---QSAQD-EHPRKEEVQEMISEVDFD--------GNGSIDFLEFLTIMGR 76 (149)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l---~~~~~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~~~~ 76 (149)
.++.+|..+. .+.|.++.+.+.+++ ...-+ ...+.++...++..+-.. +.+.++.+.|..++..
T Consensus 17 ~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4556677773 567899999999888 55422 245566666666654322 2256999999998855
No 195
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=57.28 E-value=26 Score=21.37 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCcCCCC-ceeHHHHHHH
Q 032008 97 QDGFISAAELRNVMMNLG---------ERLSDEETEQMIREADLDGDG-LVSFEEFARM 145 (149)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 145 (149)
++..||.+||.+.+..-. ..+.+++++.+...+...+.+ .+|..|-.+.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567899999999887531 346788999999998876555 4999887765
No 196
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.11 E-value=29 Score=22.29 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccC---CCCCcccHHHHHHHHHhhcc------
Q 032008 9 QIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDF---DGNGSIDFLEFLTIMGRKMK------ 79 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~------ 79 (149)
....++++|..+|+..--.++.+++.+++... ++-.++..++.+...... -... ++.+|+--+-...+
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~Pi~~~~~ 127 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQPQPRQRP 127 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCCccCCcc
Confidence 34568899999999887888999999999877 777777766665542210 0111 67777643311111
Q ss_pred -----cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC
Q 032008 80 -----ENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 80 -----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
+...+....+.+.+-+.|...+...-...+|++.|.
T Consensus 128 ~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 128 TDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 011133455555555556666666666666666663
No 197
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.41 E-value=45 Score=20.56 Aligned_cols=92 Identities=17% Similarity=0.310 Sum_probs=58.5
Q ss_pred HHHhhhcCCCCCCccHHH---HHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-HHHHHHh
Q 032008 15 EAFCMIDKDSDGLITMKD---LATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-EELKEAF 90 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e---~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f 90 (149)
-.|+.+.. +|.++..| |+.+++.. +.++..++..+......-+...+++..|...+...+..... +-+...+
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~--f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mw 109 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKEN--FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMW 109 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45666555 46666555 55555544 45677778888887777677778888888887765554332 4455555
Q ss_pred hhhcCCCCCcccHHHHHHHHHH
Q 032008 91 KVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
...- .||.++..|-.-+.+.
T Consensus 110 eIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 110 EIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HHHH--ccccccHHHHHHHHHH
Confidence 5553 4566777766555543
No 198
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=56.07 E-value=5.6 Score=21.48 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcee
Q 032008 96 DQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVS 138 (149)
Q Consensus 96 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 138 (149)
+..|.=+..+|-.+|..+|..+-+..++.+++++. ...|.+.
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E 77 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFME 77 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCcee
Confidence 33455666678888888887777778888888876 3344443
No 199
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=55.60 E-value=81 Score=23.22 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=35.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEF 142 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 142 (149)
.+....|+..- .+...+.+..|++.|.....-.+--+..++=...|...++.|+.-||
T Consensus 175 adA~~FWr~~f-g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEF 232 (563)
T KOG1785|consen 175 ADAAEFWRKHF-GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEF 232 (563)
T ss_pred ccHHHHHHHhc-CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehh
Confidence 34455555543 44567889999999887643333334445555566667777766555
No 200
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=54.13 E-value=28 Score=17.94 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQ 124 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~ 124 (149)
.|+.++|...|+.....++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3677777777777766677666554
No 201
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.27 E-value=38 Score=20.36 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=33.3
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 1 MADALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
|++.+++++.+.+..-.-.+-+ .+|.+|..++.... |. +...+...+..+
T Consensus 1 Ma~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~T----Ga--sR~Tvk~~lreL 50 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVR-EHGRITIKQLVAKT----GA--SRNTVKRYLREL 50 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHH----CC--CHHHHHHHHHHH
Confidence 7888999999988755444433 46899988888765 33 344455555444
No 202
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=53.21 E-value=43 Score=19.40 Aligned_cols=30 Identities=7% Similarity=0.350 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
+|.+++.++|...|..+....+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999888888874
No 203
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=53.20 E-value=16 Score=16.06 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=8.2
Q ss_pred CCceeHHHHHHHHh
Q 032008 134 DGLVSFEEFARMMM 147 (149)
Q Consensus 134 ~g~i~~~ef~~~l~ 147 (149)
.|.|++++++++..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35666666666543
No 204
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=53.19 E-value=38 Score=22.57 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
++||..+.+.+.++|..+|.+ .|.+..+-+.. ...+++..+-..++++
T Consensus 181 ~tLSYSEleAve~I~eELdG~-EG~lvASkiAD------rvGITRSVIVNALRKl 228 (261)
T COG4465 181 STLSYSELEAVEHIFEELDGN-EGLLVASKIAD------RVGITRSVIVNALRKL 228 (261)
T ss_pred hhccHHHHHHHHHHHHhcCCc-cceeeehhhhh------hhCchHHHHHHHHHHh
Confidence 458888999999999998874 56665555444 2334455555555544
No 205
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=53.18 E-value=47 Score=19.90 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhc
Q 032008 33 LATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 78 (149)
|...+.......++.+.+..++...|. -.+|-.+|--++....
T Consensus 39 l~~Il~mFl~~eid~e~~y~l~~~~d~---~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 39 LIKILKMFLNDEIDVEDMYNLFGAVDG---LKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhcccH---hhcCHHHHHHHHHHHH
Confidence 444454444555565555555554431 1466666655554443
No 206
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=53.13 E-value=26 Score=16.77 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHH
Q 032008 103 AAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARM 145 (149)
Q Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
.+|....|..+| +++.++..++..... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 357778888888 578888888888864 334667777664
No 207
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=53.09 E-value=40 Score=18.95 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=37.6
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC--c-HHHHHHHhhhhcCCCCCcc
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN--V-SEELKEAFKVFDRDQDGFI 101 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--~-~~~~~~~f~~~D~~~~g~i 101 (149)
||.++..|...+-..+............+...+........++.+|...+....... . ...+..+++..-. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 677777765554333322233333333333333222222256777776666543211 1 1334445555543 4566
Q ss_pred cHHHHH
Q 032008 102 SAAELR 107 (149)
Q Consensus 102 ~~~e~~ 107 (149)
+..|-.
T Consensus 91 ~~~E~~ 96 (106)
T cd07316 91 SEAERE 96 (106)
T ss_pred CHHHHH
Confidence 666543
No 208
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=53.01 E-value=73 Score=21.91 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=56.9
Q ss_pred CCCCccHHHHHHHHHHhc-CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHH----HHHhhhhcCCCC
Q 032008 24 SDGLITMKDLATVIQSAQ-DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEEL----KEAFKVFDRDQD 98 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~----~~~f~~~D~~~~ 98 (149)
-||.++..|.. ....+. ...++.++-..+...+........++.+|+..+...+... ...+ ...|+..= -|
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r-~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGR-FDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH--hc
Confidence 47999999987 333331 2344555533333444334445588999988887665332 2222 44455553 35
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 032008 99 GFISAAELRNVMMNL-GERLSDEETEQMIRE 128 (149)
Q Consensus 99 g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 128 (149)
|.++..|-.-+.+-. ...++..++..+...
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 778888753333322 234677676666554
No 209
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=51.42 E-value=35 Score=17.82 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=26.7
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
+--|+.+.++.++... |-.+++..+..+...+
T Consensus 29 NPpine~mir~M~~QM-G~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM-GRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHHHHHH
Confidence 3478888999999998 9999999988887665
No 210
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=50.98 E-value=53 Score=23.40 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 032008 42 DEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVM 110 (149)
Q Consensus 42 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 110 (149)
|......+..... ..|.+|.+|=+..+...-.....+.+..+++.++ ||.+||.+++
T Consensus 286 G~~~~~~~~s~~I------R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 286 GFGRATDHASIDI------RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred CCCcCchHHHHHH------HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 5555555554443 3688888888888877544444577888888887 6777776654
No 211
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=49.98 E-value=30 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 032008 102 SAAELRNVMMNLGERLSDEET 122 (149)
Q Consensus 102 ~~~e~~~~l~~~~~~~~~~~~ 122 (149)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667788888888888887765
No 212
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=49.98 E-value=13 Score=23.96 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=29.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCC
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGER 116 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 116 (149)
+.++.+|..||+.+--..+.+++..++...|+-
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gII 87 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGII 87 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh
Confidence 779999999999999999999999999887753
No 213
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=48.64 E-value=31 Score=24.63 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=43.7
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHh
Q 032008 86 LKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMM 147 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (149)
+......+|+.+.|.++..-....|-...-+--.+.++.+|.... +..|.+.+-.|.+++.
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 344467789999999998888877776643334557889998887 5567776666666654
No 214
>PRK04158 transcriptional repressor CodY; Validated
Probab=48.00 E-value=23 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.320 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 3 DALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
++||..|.+.+.++|..+|.+ .|.+..+.+.. ...+++..+-..++++
T Consensus 178 ~tLSySEleAv~hIf~eL~g~-EG~lvASkiAD------rvgITRSVIVNALRK~ 225 (256)
T PRK04158 178 NTLSYSELEAVEHIFEELDGN-EGLLVASKIAD------RVGITRSVIVNALRKL 225 (256)
T ss_pred HhcCHhHHHHHHHHHHhcCCC-cceEEeeeccc------ccCCchhhhhhhhhhh
Confidence 468889999999999998764 45554444433 3334444554444444
No 215
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.59 E-value=66 Score=19.87 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 88 EAFKVFDRDQDGFISAAELRNVMMNL--GERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 88 ~~f~~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
-+|+++.. ||.++..|...+..-+ .++++..++..++.....-+...+++-.|...|
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l 92 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVL 92 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666643 4556666554443322 345666666666655544444455555555544
No 216
>PF14473 RD3: RD3 protein
Probab=47.34 E-value=50 Score=20.12 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
++|+.+..+|..++.++-+...|.+ ..-|++++. ...+...++-.+|...
T Consensus 71 ~i~~~ErlqLE~lCski~P~~~g~v-I~RFRella---e~e~~~~Ev~~iFr~v 120 (133)
T PF14473_consen 71 QISPGERLQLEDLCSKIPPCECGPV-ISRFRELLA---ENEPEVWEVPRIFRSV 120 (133)
T ss_pred CCCHHHHHHHHHHHhcCChhhhHHH-HHHHHHHHH---ccCCCHHHHHHHHHHH
Confidence 4677777788888887777766653 334555544 4466666776666543
No 217
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=47.05 E-value=1.1e+02 Score=22.34 Aligned_cols=52 Identities=10% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh
Q 032008 62 NGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL 113 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
+.++++..+.-...........+....++...+.+++|..+.+++.+++...
T Consensus 72 ~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 4468888887666655555555778888999999999999999998888754
No 218
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=46.96 E-value=88 Score=23.71 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=44.3
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---Cc-----CCCCceeHHHHHHHHh
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREA---DL-----DGDGLVSFEEFARMMM 147 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l~ 147 (149)
..+|..+-....+.++...|..+|+..|+.-++-.+..+++.+ ++ ...+.++.+-|.+++.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 3457777555679999999999999999877766666665543 32 2345788888887753
No 219
>PRK04387 hypothetical protein; Provisional
Probab=46.91 E-value=52 Score=18.51 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 6 TEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
|.+++-.+...|.....--..-|.+++|....+.+....++..+=..+++.+
T Consensus 12 steEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reF 63 (90)
T PRK04387 12 STEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREF 63 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455555555555554433445566666666665545555555555555444
No 220
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=46.69 E-value=51 Score=20.50 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHHHHh
Q 032008 9 QIAEFQEAFCMIDKDSDGLITMKDLATVIQSA 40 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~ 40 (149)
.++.+.......|..+.++||.++++.++-.+
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34445555555566566666666666654433
No 221
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=46.43 E-value=19 Score=21.27 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhccCCCCCccc-HHHHHHHHHh---hcccCcHHHHHHHhhhhc-CCCCCcccHHHHH
Q 032008 33 LATVIQSAQDEHPRKEEVQEMISEVDFDGNGSID-FLEFLTIMGR---KMKENVSEELKEAFKVFD-RDQDGFISAAELR 107 (149)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~-~~ef~~~~~~---~~~~~~~~~~~~~f~~~D-~~~~g~i~~~e~~ 107 (149)
+..++..+ +..++..+++.|..+......-++ |++|-.+++. +..-. .+.+ |...+ ++..+-+..+|+.
T Consensus 11 l~~m~~~l--~e~~e~~~r~aWdalPaSAqnvldnfeqFHalv~isqA~~~l~---~~ae-~~~~~~~e~~~~~~~~EY~ 84 (121)
T PF11269_consen 11 LHNMVNEL--HEVSEEAFREAWDALPASAQNVLDNFEQFHALVSISQAWAGLS---RMAE-FDISELPEDMEEEEEQEYR 84 (121)
T ss_dssp HHHHHHHH--HHTTT-HHHHHHHHS-HHHHTSS-H-HHHHHHH-HHHHHHHHH---HH-----HHHHHHTTTTS-HHHHH
T ss_pred HHHHHHHH--HHhhHHHHHHHHHHCcHHHHHHhhhHHHHHHHHHHHHHHHcch---HHhh-chhhcCccchhHHHHHHHH
Confidence 33444444 445566677778777655555555 3777666621 11111 1111 11111 3566778888888
Q ss_pred H-HHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 108 N-VMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 108 ~-~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
. ++.. +....++.+.+.+-+-+...+-+.+|...+
T Consensus 85 ~~lld~----vl~~~lKd~vKqLKKAR~d~~mk~~f~~V~ 120 (121)
T PF11269_consen 85 AQLLDR----VLHNCLKDMVKQLKKARRDPSMKNSFKEVF 120 (121)
T ss_dssp H-HHHH----HHHTHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHccCHHHHHHHHHHh
Confidence 7 5554 334466667666665555566677776654
No 222
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=45.92 E-value=18 Score=18.54 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=11.5
Q ss_pred HhhhcCCCCCCccHHHHHH
Q 032008 17 FCMIDKDSDGLITMKDLAT 35 (149)
Q Consensus 17 f~~~d~~~~g~i~~~e~~~ 35 (149)
...++.+++|+|+...+..
T Consensus 21 ~~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 21 RSQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHHCTTTTTBEEHHHHTT
T ss_pred HHHHHhcCCCcEeHHHHHc
Confidence 3445566677777666554
No 223
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=45.58 E-value=1.4e+02 Score=22.98 Aligned_cols=78 Identities=9% Similarity=0.167 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHHhhhcC-CCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC
Q 032008 3 DALTEDQIAEFQEAFCMIDK-DSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN 81 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 81 (149)
+||.++.+.-|-+.|...-- -.+=-|+.+.+.++=..+ |..++.+..+.+-..+-.-..|.|+=++++.-++..+.-.
T Consensus 81 ~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~-~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~ 159 (529)
T PRK06253 81 KQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEIL-GRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVS 159 (529)
T ss_pred HhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHh-CCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCC
Confidence 57788888888888887642 234457777777755545 8788877744443333333677888888877766555443
No 224
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=45.40 E-value=63 Score=19.07 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHH
Q 032008 62 NGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEE 141 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 141 (149)
...++.+-=+.+.....+......+..-+.-+...+...||.+...+++.-.. .+..-++.+|.++.=.+-++|
T Consensus 38 qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------~~~~dls~Yde~~AWP~liDe 111 (117)
T PF03556_consen 38 QRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------TVDEDLSNYDEEGAWPSLIDE 111 (117)
T ss_dssp -SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------H-HCCHCC--TTSSS-HHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------hcCccccCCCCCCCCcHHHHH
Confidence 34444444444444333322112223333333333445566665555554321 112334444444333456666
Q ss_pred HHHHH
Q 032008 142 FARMM 146 (149)
Q Consensus 142 f~~~l 146 (149)
|+..+
T Consensus 112 FVe~~ 116 (117)
T PF03556_consen 112 FVEWL 116 (117)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 225
>PRK00523 hypothetical protein; Provisional
Probab=44.88 E-value=50 Score=17.70 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
+--|+.+.++.++... |-.|++..++.+.+.+
T Consensus 37 NPpine~mir~M~~QM-GqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQM-GRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHh-CCCccHHHHHHHHHHH
Confidence 3478888888888888 8899998888887765
No 226
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=44.40 E-value=97 Score=20.90 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCC
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDG 61 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 61 (149)
+++++++++...+.-++.-+.-.++..+....|..+ +.++..+|.....++
T Consensus 145 l~~~~~q~v~~~i~~l~~~r~~~~~~~~~~~~L~~~------~~dl~~lF~~vkkD~ 195 (233)
T TIGR02878 145 VPEDQVQRVDSHLSYLENFRFQQRSEDEKEEQLSLM------RGDLKALFDGVKEDE 195 (233)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHH------HHHHHHHHcccccCC
Confidence 678888888888888776666677777777777766 667788887765543
No 227
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=44.33 E-value=58 Score=18.28 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcc
Q 032008 62 NGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFI 101 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 101 (149)
.+.|+.+-|+.+-...+....++..+.+.|.|.-+.+=.+
T Consensus 26 ~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L 65 (89)
T PF08356_consen 26 DNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSL 65 (89)
T ss_pred CCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCccee
Confidence 3458888888777777777777888888888866655333
No 228
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=44.13 E-value=1.2e+02 Score=22.99 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=42.3
Q ss_pred HHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc---cC-----CCCCcccHHHHHHHH
Q 032008 15 EAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV---DF-----DGNGSIDFLEFLTIM 74 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~~ 74 (149)
-+|..+...+++.++.--|..+|+.. |+.-+.+-+..+++.+ ++ ...+.++.+.|..++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 36777766567999999999999999 8876665555555443 32 234678999997765
No 229
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=44.11 E-value=55 Score=17.93 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=26.0
Q ss_pred CccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 032008 27 LITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIM 74 (149)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 74 (149)
.-+..-=..+|....|..++.+....+-..++......|+++|+..+.
T Consensus 28 ~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 28 HHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333333344566665666665555444444444445557777776554
No 230
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=42.65 E-value=90 Score=20.00 Aligned_cols=53 Identities=25% Similarity=0.413 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHH----HHHhCCCCCHHHHHHHHHhhCcCC
Q 032008 61 GNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNV----MMNLGERLSDEETEQMIREADLDG 133 (149)
Q Consensus 61 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~----l~~~~~~~~~~~~~~~~~~~d~~~ 133 (149)
..|.++..+|..-+...+... -||.+.|..+ +.+.| +.+.+++.-+..++.|.
T Consensus 33 a~Gklsm~dFsk~I~~YmeeN------------------NISqeKf~niQkk~mERYG--fd~~~iE~q~K~~Gid~ 89 (186)
T PF12983_consen 33 AEGKLSMADFSKKIMEYMEEN------------------NISQEKFLNIQKKFMERYG--FDPSEIEKQMKSMGIDM 89 (186)
T ss_pred hcCcccHHHHHHHHHHHHHHc------------------CCcHHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCc
Confidence 578888888877766655432 2555555544 33434 55777777777776554
No 231
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=64 Score=23.71 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=14.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELR 107 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~ 107 (149)
..+-.+|+..|.+++|.++-+||.
T Consensus 477 svlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 477 SVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHHHhhhhhhcCCcccCcCHHHHH
Confidence 345555666666666666666654
No 232
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=42.23 E-value=42 Score=18.81 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 6 TEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
+.+++-.+...|.....--.+-|++++|....+.+....++..+-..+.+.+
T Consensus 12 steEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~F 63 (88)
T PF05256_consen 12 STEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREF 63 (88)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3445555555555544333345555555555555544445544444444444
No 233
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.07 E-value=98 Score=20.24 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred HhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 75 GRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 75 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
..+....+++...-+-+.|.+|+.|.|+...+..+.+- .+.++.+...++.+.
T Consensus 110 ~~w~~g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI~ 162 (195)
T PF11363_consen 110 NEWAKGADPELRALVNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAIK 162 (195)
T ss_pred HHHhcCCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHHH
Confidence 33444444444555668888899999999888766553 355666666666653
No 234
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.05 E-value=62 Score=17.95 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 7 EDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
.+++..+.+.|+....-=.+.++.++|....+....+.++..+-..++..+
T Consensus 13 TEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~F 63 (90)
T COG4476 13 TEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDF 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHH
Confidence 344444444554444333345555555555544434444444444444433
No 235
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=41.81 E-value=59 Score=19.96 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREADL 131 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (149)
+|.+++..+.......++++++..++...+.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 5677777776666666777777777777763
No 236
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.42 E-value=1.2e+02 Score=24.49 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHh-------------hcccCc
Q 032008 16 AFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGR-------------KMKENV 82 (149)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~-------------~~~~~~ 82 (149)
.+..||+.++|.|..-.|+..+-.+. ....++..+.+|..+...+.- ++-..|-.++.. +-..+.
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgsNv 552 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGSNI 552 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Confidence 46788999999999999999888773 344555667888887544333 334444322222 122233
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 032008 83 SEELKEAFKVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 83 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 111 (149)
+..++.+|+.. ++.-.|+..+|...+.
T Consensus 553 epsvrsCF~~v--~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 553 EPSVRSCFQFV--NNKPEIEAALFLDWMR 579 (966)
T ss_pred ChHHHHHHHhc--CCCCcchHHHHHHHhc
Confidence 35678888843 4455677777776654
No 237
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=40.23 E-value=96 Score=19.97 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=27.1
Q ss_pred CCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhh
Q 032008 22 KDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISE 56 (149)
Q Consensus 22 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
.+.+|+++.+++.+.+..- +...+.+++.++...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHHHHc
Confidence 3678999999999988765 566888888888654
No 238
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.79 E-value=1e+02 Score=24.30 Aligned_cols=77 Identities=22% Similarity=0.456 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHhhCcCCCCc
Q 032008 65 IDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNL--------GERLSDEETEQMIREADLDGDGL 136 (149)
Q Consensus 65 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~ 136 (149)
+++++|. ......+..++..|.++|. .+|.++.+++..++... ....+.+....++...+.+..|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 7777776 2333344667777888876 78888888887776643 12334555677777787777777
Q ss_pred eeHHHHHHHHh
Q 032008 137 VSFEEFARMMM 147 (149)
Q Consensus 137 i~~~ef~~~l~ 147 (149)
+.++++..++.
T Consensus 78 ~~~~~~~~ll~ 88 (646)
T KOG0039|consen 78 ITNEDLEILLL 88 (646)
T ss_pred eeecchhHHHH
Confidence 77766655543
No 239
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=39.64 E-value=78 Score=18.44 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=27.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.||.+.+..+|+..|..+.+..+..+...+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999999988888888874
No 240
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=39.40 E-value=1.7e+02 Score=22.35 Aligned_cols=78 Identities=9% Similarity=0.137 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHhhhc-CCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccC
Q 032008 3 DALTEDQIAEFQEAFCMID-KDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKEN 81 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 81 (149)
+||.++.+..|-+.|...- +-.+=-|+.+.+.++=. + |..++.+..+.+-..+-.-..|.|+=+++..-++..+.-.
T Consensus 81 kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~-g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~ 158 (533)
T TIGR00470 81 KQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-L-GIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVS 158 (533)
T ss_pred HhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-h-CCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCc
Confidence 5778888888888887764 22344577777777554 6 7777776554444433334678888888877776655544
Q ss_pred c
Q 032008 82 V 82 (149)
Q Consensus 82 ~ 82 (149)
+
T Consensus 159 d 159 (533)
T TIGR00470 159 N 159 (533)
T ss_pred h
Confidence 3
No 241
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=38.52 E-value=99 Score=20.34 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCCcccHHHHHHHHHhhcccCcHHHHHHHh-hhhcCCCCCccc
Q 032008 60 DGNGSIDFLEFLTIMGRKMKENVSEELKEAF-KVFDRDQDGFIS 102 (149)
Q Consensus 60 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f-~~~D~~~~g~i~ 102 (149)
-+.++++++.|+.+....++...++.+-..+ ..+..+.+|.++
T Consensus 101 ~gk~~~~L~~Fl~~~~p~~gi~~p~~YL~~~Gw~l~~~~~g~~~ 144 (201)
T PF04769_consen 101 LGKDKAPLDQFLAFACPLIGIIPPEDYLEQLGWQLSQNEEGTIT 144 (201)
T ss_pred cccccCCHHHHHHHhhhhcCCCCHHHHHHHcCCeEeeCCCCCEE
Confidence 3557889999999888777777766655554 333444444443
No 242
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=38.20 E-value=28 Score=17.54 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=8.5
Q ss_pred ceeHHHHHHHHhcC
Q 032008 136 LVSFEEFARMMMAF 149 (149)
Q Consensus 136 ~i~~~ef~~~l~~~ 149 (149)
.++|.||..++.+|
T Consensus 20 iM~~~eF~~CW~nF 33 (55)
T PF05240_consen 20 IMTYSEFQYCWENF 33 (55)
T ss_dssp E--HHHHHHHHHHC
T ss_pred ecCcHHHHHHHHHH
Confidence 46777887777665
No 243
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=38.15 E-value=60 Score=16.66 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4577888999999999999888764
No 244
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=37.96 E-value=60 Score=16.62 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=15.2
Q ss_pred CcHHHHHHHhhhh--cCCCCCcccHHHHHHHHHH
Q 032008 81 NVSEELKEAFKVF--DRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 81 ~~~~~~~~~f~~~--D~~~~g~i~~~e~~~~l~~ 112 (149)
.+.+.+...++.+ ++ +...++.+|+..+|..
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 3345566666666 32 3334666666666654
No 245
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.96 E-value=53 Score=15.95 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhh
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISE 56 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
.+++.+...|...|.. +...+..+...+-..+ | ++...+...|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~-~--l~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKEL-G--LTERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHH-C--cCHHHHHHHHHH
Confidence 4677888888888887 4577777777776655 3 566677766643
No 246
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=37.86 E-value=66 Score=17.08 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.-+.+|+...|...|+.++..-+..-+..+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4588999999999999999999888888765
No 247
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=37.61 E-value=72 Score=17.60 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=10.4
Q ss_pred hhhcCCCCCCccHHHHHH
Q 032008 18 CMIDKDSDGLITMKDLAT 35 (149)
Q Consensus 18 ~~~d~~~~g~i~~~e~~~ 35 (149)
..++.+.+|+++.+-+..
T Consensus 30 ~~~~~~~dG~Vpl~~i~~ 47 (82)
T cd08032 30 EQIEKSRDGYIDISLLVS 47 (82)
T ss_pred HHhcCCCCCCEeHHHHhc
Confidence 344555667776665554
No 248
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=37.05 E-value=1.3e+02 Score=22.85 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS 83 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 83 (149)
++....++....+|...-+.+...++..++..++..+ +......+--..|..-+.. ...+.|..++..+..-.. ..
T Consensus 478 tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~sl-gl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel~--D~ 553 (612)
T COG5069 478 TLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSL-GLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSELV--DY 553 (612)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh-ccccCCccceeeccCCccc-cccchHHHHHHHHhhhhc--Ch
Confidence 4455566666778877766666688999999999988 7766654444444322111 113455555444332211 11
Q ss_pred HHHHHHhhhhc
Q 032008 84 EELKEAFKVFD 94 (149)
Q Consensus 84 ~~~~~~f~~~D 94 (149)
..+...|..++
T Consensus 554 d~v~~~~~~f~ 564 (612)
T COG5069 554 DLVTRGFTEFD 564 (612)
T ss_pred hhhhhhHHHHH
Confidence 34555555554
No 249
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=36.97 E-value=49 Score=19.37 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.1
Q ss_pred CCccHHHHHHHHH
Q 032008 26 GLITMKDLATVIQ 38 (149)
Q Consensus 26 g~i~~~e~~~~l~ 38 (149)
..|+..++...+.
T Consensus 11 eiIt~sel~~~~~ 23 (118)
T PF09312_consen 11 EIITQSELEQRLA 23 (118)
T ss_dssp SEEEHHHHHHHHH
T ss_pred cCcCHHHHHHHHH
Confidence 3455555544443
No 250
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=36.80 E-value=90 Score=18.29 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHhhCcCCCCceeHHHHHHHH
Q 032008 116 RLSDEETEQMIREADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 116 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (149)
.++.+|-..+.+..+.=..|.|++...+.+|
T Consensus 65 ~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 65 KLSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred hCCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3455555555555554455556655554444
No 251
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=36.47 E-value=75 Score=17.27 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=17.7
Q ss_pred hhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 032008 18 CMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMI 54 (149)
Q Consensus 18 ~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 54 (149)
..+..+.+|+|+.+-+..+=+.- .+..+.+.+...+
T Consensus 25 ~~~~~~~dG~Vpl~~i~~F~rmk-~l~~d~~~I~~Al 60 (77)
T cd08033 25 KHVRRNKEGYVPIKLIASFKKVK-ALTRDWRVVAAAL 60 (77)
T ss_pred HHhccCCCCcEehHHHhcchHHH-HHcCCHHHHHHHH
Confidence 33444566777776655532222 3444444444444
No 252
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=36.09 E-value=1.2e+02 Score=20.84 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=40.8
Q ss_pred CCCcccHHHHHHHHHhhcc--cCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHH----HHHHHhhCcCCC
Q 032008 61 GNGSIDFLEFLTIMGRKMK--ENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEET----EQMIREADLDGD 134 (149)
Q Consensus 61 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~----~~~~~~~d~~~~ 134 (149)
-||+|+-.|.. .....+. ....+.-..+.+.+...+....+..++...+.... .-..+.+ ..+|...- -|
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~-~~r~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC-GGRFDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH--hc
Confidence 47888888876 3333332 12234433445555555555577777777776543 2233333 33444443 34
Q ss_pred CceeHHH
Q 032008 135 GLVSFEE 141 (149)
Q Consensus 135 g~i~~~e 141 (149)
|.++-.|
T Consensus 144 G~l~~~E 150 (267)
T PRK09430 144 GSLHPNE 150 (267)
T ss_pred CCCCHHH
Confidence 6676665
No 253
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=35.95 E-value=67 Score=16.56 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=16.0
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCC
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
..+++.++.+...-++.+|...-....|.
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 34455555444555566666666665554
No 254
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=35.83 E-value=93 Score=18.20 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.||.+.+..++...|..+.+..++.+...+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 7999999999999999999988888888875
No 255
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=34.97 E-value=1.2e+02 Score=19.99 Aligned_cols=68 Identities=6% Similarity=0.069 Sum_probs=44.5
Q ss_pred hhHHHHHHH---HHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcc--cHHHHHHHHHhhc
Q 032008 5 LTEDQIAEF---QEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSI--DFLEFLTIMGRKM 78 (149)
Q Consensus 5 l~~~~~~~l---~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~~~ 78 (149)
+|....+++ .+++..+...+--.++..|+.+.+ .+++..+++=|..+..-|...+ +-+.+..++...+
T Consensus 7 IP~AT~kRL~~YyR~le~l~a~~v~rvsS~els~~~------~vdsatIRrDfSYFG~lGkrG~GYnV~~L~~ff~~~L 79 (211)
T COG2344 7 IPKATAKRLPLYYRVLERLHASGVERVSSKELSEAL------GVDSATIRRDFSYFGELGKRGYGYNVKYLRDFFDDLL 79 (211)
T ss_pred CCHHHHHHhHHHHHHHHHHHHcCCceecHHHHHHHh------CCCHHHHhhhhHHHHhcCCCCCCccHHHHHHHHHHHh
Confidence 677777776 456666667788899999999865 3567788887777754444333 3444555554443
No 256
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=34.86 E-value=98 Score=20.35 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCcccHHHHHHHHHhhcccCcH------------HHHHHHhhhhcCCCCCcc
Q 032008 61 GNGSIDFLEFLTIMGRKMKENVS------------EELKEAFKVFDRDQDGFI 101 (149)
Q Consensus 61 ~~g~i~~~ef~~~~~~~~~~~~~------------~~~~~~f~~~D~~~~g~i 101 (149)
..|.++|+.++.-+......... +.+...-+.+|++..|.|
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 35667777777777655443211 233444555666655544
No 257
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=34.59 E-value=1.6e+02 Score=21.18 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=11.0
Q ss_pred hhhcCCCCCcccHHHHHHHHH
Q 032008 91 KVFDRDQDGFISAAELRNVMM 111 (149)
Q Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
+.+-..-+|++=..|+..-++
T Consensus 86 rSctaEFSGflLYKEl~rrlk 106 (357)
T PLN02508 86 RSCTAEFSGFLLYKELGRRLK 106 (357)
T ss_pred hhhhhhcccchHHHHHHHhcc
Confidence 444455556665555554443
No 258
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=33.93 E-value=1e+02 Score=19.30 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhc
Q 032008 116 RLSDEETEQMIREADLDGDGLVSFEEFARMMMA 148 (149)
Q Consensus 116 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (149)
.+.-.++..++..++.+..|.+...+|++.+..
T Consensus 106 KlrVk~LK~iL~~~g~~C~GC~EK~dfv~ri~e 138 (154)
T PF10208_consen 106 KLRVKQLKKILDDWGEDCKGCLEKSDFVRRIEE 138 (154)
T ss_dssp TTCHHHHHHHHHHHTTT-SS-CSHHHHHHHCHC
T ss_pred hCcHHHHHHHHHHcCCCCCCccchHHHHHHHHH
Confidence 356677888888888888899999999887643
No 259
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=33.42 E-value=59 Score=15.93 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCC
Q 032008 25 DGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFD 60 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 60 (149)
.|.++..+|+..+. .+...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg------~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG------LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT------S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC------ccHHHHHHHHHHHhcc
Confidence 67888888888763 3466666666666654
No 260
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=33.34 E-value=1.3e+02 Score=20.34 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=8.6
Q ss_pred CCcccHHHHHHHHHhhc
Q 032008 62 NGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 62 ~g~i~~~ef~~~~~~~~ 78 (149)
.|+++..||-..+...+
T Consensus 39 ~~klsk~Efd~~~~~~L 55 (252)
T PF12767_consen 39 SGKLSKEEFDKECRRIL 55 (252)
T ss_pred HhccCHHHHHHHHHHHh
Confidence 45555555555544444
No 261
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=33.25 E-value=86 Score=17.66 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=4.6
Q ss_pred CCCCceeHHHH
Q 032008 132 DGDGLVSFEEF 142 (149)
Q Consensus 132 ~~~g~i~~~ef 142 (149)
.+.+.|+...|
T Consensus 69 ~~~~~Ip~~~~ 79 (90)
T PF02337_consen 69 QGPEKIPIQAF 79 (90)
T ss_dssp CSTTTS-CHHH
T ss_pred hCCCCCChhHH
Confidence 44455544433
No 262
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=33.14 E-value=1.8e+02 Score=20.58 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHHhcCCCCCHHHHHHHHhh
Q 032008 26 GLITMKDLATVIQSAQDEHPRKEEVQEMISE 56 (149)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
..++.+++..++..+.++....+++..+...
T Consensus 81 ~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l 111 (335)
T PF08429_consen 81 NKLTLEELEALLEEIESLPFDCPEIDQLKEL 111 (335)
T ss_pred ccCCHHHHHHHHHHHhcCCeeCchHHHHHHH
Confidence 4689999999998886555555555444433
No 263
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.07 E-value=64 Score=15.49 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 032008 98 DGFIS-AAELRNVMMNLGERLSDEETEQMIREA 129 (149)
Q Consensus 98 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
.|.|+ ...+.+.+...|+.++++.++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 45554 334444555567777777777776653
No 264
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=32.66 E-value=78 Score=17.30 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 032008 105 ELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~ 125 (149)
|+...|+.+|..+++++...+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 556678888988888875554
No 265
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=32.39 E-value=72 Score=15.85 Aligned_cols=31 Identities=10% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCCCccHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 032008 24 SDGLITMKDLATVIQSAQDEHPRKEEVQEMIS 55 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (149)
..|.|+.+||..-+... ....+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a-~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAA-YAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHc
Confidence 36899999999888777 45566666666653
No 266
>PRK01844 hypothetical protein; Provisional
Probab=32.23 E-value=88 Score=16.81 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHHhcCCCCCHHHHHHHHhhc
Q 032008 26 GLITMKDLATVIQSAQDEHPRKEEVQEMISEV 57 (149)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (149)
--|+.+.++.++... |-.+++..++.+.+.+
T Consensus 37 Ppine~mir~Mm~QM-GqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQM-GQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHh-CCCccHHHHHHHHHHH
Confidence 468888888888888 8888888888887765
No 267
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.79 E-value=30 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHH---------HHHHHhhccCCCC----------------------
Q 032008 14 QEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEE---------VQEMISEVDFDGN---------------------- 62 (149)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~---------~~~~~~~~d~~~~---------------------- 62 (149)
++++...|-+.++.++..+|..+..+. +..+.... ...++..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F-~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAF-GNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHH-HHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 355666777788888888877766665 33333222 4566677777776
Q ss_pred -CcccHHHHHHHHH
Q 032008 63 -GSIDFLEFLTIMG 75 (149)
Q Consensus 63 -g~i~~~ef~~~~~ 75 (149)
|.++.++.+.++.
T Consensus 519 ~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 519 FGVVTVDELVALLA 532 (975)
T ss_pred cCeeEHHHHHHHHH
Confidence 7788888776665
No 268
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.78 E-value=54 Score=14.22 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.1
Q ss_pred ccHHHHHHHHH
Q 032008 101 ISAAELRNVMM 111 (149)
Q Consensus 101 i~~~e~~~~l~ 111 (149)
||.+|++.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 269
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=31.08 E-value=1.5e+02 Score=19.26 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 032008 9 QIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMIS 55 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (149)
-.+.++++|..+|+.+--.++.+++..++... |+...+..+..+..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~-gIIR~r~KI~A~i~ 98 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADA-GIIRNRGKIKATIN 98 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc-chhhhHHHHHHHHH
Confidence 34568899999999888899999999999888 88777777666553
No 270
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=30.67 E-value=63 Score=20.02 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHhhhcCCC
Q 032008 3 DALTEDQIAEFQEAFCMIDKDS 24 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~ 24 (149)
+.||+++++++......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 3578888888888887777754
No 271
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=96 Score=16.55 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 032008 99 GFISAAELRNVMMNLGERLSDEETEQMIREA 129 (149)
Q Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
=.|+.+-++..+...|.+.++..++.+++..
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3577777777777778777777777777654
No 272
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=29.82 E-value=83 Score=15.77 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhh
Q 032008 105 ELRNVMMNLGERLSDEETEQMIREA 129 (149)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
|.++.+...|+.++.+.+.-+++.+
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 4666777778888887777766655
No 273
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.77 E-value=61 Score=28.47 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.5
Q ss_pred CcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC
Q 032008 81 NVSEELKEAFKVFDRDQDGFISAAELRNVMMNLG 114 (149)
Q Consensus 81 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 114 (149)
+..+...+++..+|++..|.|...++..+++.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 3447788999999999999999999999999763
No 274
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.93 E-value=16 Score=15.81 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=8.5
Q ss_pred HHHhhCcCCCCceeHH
Q 032008 125 MIREADLDGDGLVSFE 140 (149)
Q Consensus 125 ~~~~~d~~~~g~i~~~ 140 (149)
++..=|.|++..|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 4444555666555543
No 275
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.85 E-value=1.6e+02 Score=18.74 Aligned_cols=15 Identities=0% Similarity=0.153 Sum_probs=7.6
Q ss_pred CCCCcccHHHHHHHH
Q 032008 60 DGNGSIDFLEFLTIM 74 (149)
Q Consensus 60 ~~~g~i~~~ef~~~~ 74 (149)
..+..|++++...++
T Consensus 24 ~TSTYVTL~dla~mV 38 (193)
T COG5394 24 GTSTYVTLEDLAQMV 38 (193)
T ss_pred CCceeeeHHHHHHHH
Confidence 334455555555444
No 276
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=28.26 E-value=1.3e+02 Score=17.59 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=3.5
Q ss_pred CCHHHHHHH
Q 032008 117 LSDEETEQM 125 (149)
Q Consensus 117 ~~~~~~~~~ 125 (149)
+++++++.+
T Consensus 95 ~~~e~l~~I 103 (112)
T PRK14981 95 LSPEELDEI 103 (112)
T ss_pred CCHHHHHHH
Confidence 333333333
No 277
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.00 E-value=2.1e+02 Score=19.80 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=22.5
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHH
Q 032008 94 DRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFAR 144 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (149)
|+..+..|-.+-+..++..+|+...+-.+--+-=+++...-|..+.++|+.
T Consensus 75 d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~ 125 (260)
T KOG3077|consen 75 DPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLK 125 (260)
T ss_pred CcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHH
Confidence 444444555666666666655433221111111122233344555555554
No 278
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=27.80 E-value=1.2e+02 Score=17.00 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCCccHHHHHHHHHHhc---CC-CCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCC
Q 032008 25 DGLITMKDLATVIQSAQ---DE-HPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDG 99 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~~~---~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g 99 (149)
||.++.+|...+...+. +. ......+..++......- ...+..++...+....++... ..+..++..... ||
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cC
Confidence 67777777666555542 11 223444555554442210 023345555555444432111 334444555543 34
Q ss_pred cccHHHH
Q 032008 100 FISAAEL 106 (149)
Q Consensus 100 ~i~~~e~ 106 (149)
.++..|-
T Consensus 93 ~~~~~E~ 99 (111)
T cd07176 93 EVDPEER 99 (111)
T ss_pred CCCHHHH
Confidence 5555543
No 279
>COG5562 Phage envelope protein [General function prediction only]
Probab=27.73 E-value=49 Score=20.17 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=13.0
Q ss_pred hCcCCCCceeHHHHHHHH
Q 032008 129 ADLDGDGLVSFEEFARMM 146 (149)
Q Consensus 129 ~d~~~~g~i~~~ef~~~l 146 (149)
......|..|++||+..+
T Consensus 81 l~~~qsGqttF~ef~~~l 98 (137)
T COG5562 81 LRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred HHHHhcCCccHHHHHHHH
Confidence 334567888899888765
No 280
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=27.64 E-value=98 Score=15.91 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=7.1
Q ss_pred ccHHHHHHHHHHhCC
Q 032008 101 ISAAELRNVMMNLGE 115 (149)
Q Consensus 101 i~~~e~~~~l~~~~~ 115 (149)
|..+++...+...|.
T Consensus 25 I~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 25 INLEELHAWLKASGI 39 (64)
T ss_pred ccHHHHHHHHHHcCC
Confidence 444455555544343
No 281
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=27.55 E-value=29 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=26.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCC
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
+.++.+|.-||+..--..+.+++..++..-++
T Consensus 54 e~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~I 85 (187)
T PRK10353 54 ENYRACFHQFDPVKVAAMQEEDVERLVQDAGI 85 (187)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCchh
Confidence 67889999999888777888888888886654
No 282
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=27.16 E-value=1.2e+02 Score=16.86 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHhhcccCcH-HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 032008 64 SIDFLEFLTIMGRKMKENVS-EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMI 126 (149)
Q Consensus 64 ~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
.+|+.+++..- +...... +.=..+-+.+ +=|+.+..+|...|..+| ++.+++..++
T Consensus 30 ~it~~dL~~~G--L~g~~~s~~rR~~l~~~L---~iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELG--LIGGPDSKERREKLGEYL---GIGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCC--CCCCccHHHHHHHHHHHH---CCCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 47888776542 2222222 2222333444 337888888888887766 5676666553
No 283
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=27.12 E-value=1.6e+02 Score=18.17 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 032008 97 QDGFISAAELRNVMMNLGERLSDEETEQMIREADL 131 (149)
Q Consensus 97 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (149)
.....|.+|+...|+..|+.++..-+...+...+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 34567899999999999999999888888887753
No 284
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=26.75 E-value=59 Score=19.76 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=17.0
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHhCC
Q 032008 90 FKVFDRDQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~~~~ 115 (149)
+|-+...+...|...++++++...|.
T Consensus 8 LRGINVGG~nki~MaeLr~~l~~~Gf 33 (137)
T PF08002_consen 8 LRGINVGGKNKIKMAELREALEDLGF 33 (137)
T ss_dssp ESS-SBTTBS---HHHHHHHHHHCT-
T ss_pred EcceecCCCCcccHHHHHHHHHHcCC
Confidence 45666777788999999999998764
No 285
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.59 E-value=42 Score=26.33 Aligned_cols=61 Identities=23% Similarity=0.525 Sum_probs=37.7
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHH---------HHHHHHhhCcCCC-----------------------
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEE---------TEQMIREADLDGD----------------------- 134 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~---------~~~~~~~~d~~~~----------------------- 134 (149)
..++..+|-+-++..+..++.+....+|-.+.... ...++..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 34566667777777777777666665543222222 3344555566655
Q ss_pred CceeHHHHHHHHh
Q 032008 135 GLVSFEEFARMMM 147 (149)
Q Consensus 135 g~i~~~ef~~~l~ 147 (149)
|.++.+|.+.++.
T Consensus 520 ~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 520 GVVTVDELVALLA 532 (975)
T ss_pred CeeEHHHHHHHHH
Confidence 8899998887764
No 286
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=26.46 E-value=1.5e+02 Score=17.55 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHhhhc
Q 032008 4 ALTEDQIAEFQEAFCMID 21 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d 21 (149)
.++.++++++..++..++
T Consensus 37 ~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 37 GLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp T--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 345555555555554443
No 287
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=26.46 E-value=1e+02 Score=15.71 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCC----ccHHHHHHHHHHhcCC
Q 032008 4 ALTEDQIAEFQEAFCMIDKDSDGL----ITMKDLATVIQSAQDE 43 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~~ 43 (149)
.+++++.+.+...|... |+ .+..+..++...+ |+
T Consensus 7 ~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~l-gl 44 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEI-GV 44 (58)
T ss_pred CCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHh-CC
Confidence 37888999999888853 55 7777777777655 44
No 288
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=26.31 E-value=1.4e+02 Score=17.24 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=25.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 99 GFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
-.+|.+++..++...|..+....+..+.+.+.
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 36999999999999998888877777766664
No 289
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=26.07 E-value=1.2e+02 Score=16.76 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=6.4
Q ss_pred CCCccHHHHHH
Q 032008 25 DGLITMKDLAT 35 (149)
Q Consensus 25 ~g~i~~~e~~~ 35 (149)
+|+|+.+.+..
T Consensus 35 ~G~Vpl~~i~~ 45 (82)
T cd08028 35 DGWVPMEVMLK 45 (82)
T ss_pred CCCEEhHHHhC
Confidence 56666655544
No 290
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.86 E-value=79 Score=14.22 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHhCCC
Q 032008 101 ISAAELRNVMMNLGER 116 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~ 116 (149)
.+-++++..|...|+.
T Consensus 4 Ws~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 3455666666665543
No 291
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=25.67 E-value=1.3e+02 Score=18.16 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCc-CCCCceeHHHHHHHHh
Q 032008 106 LRNVMMNLGERLSDEETEQMIREADL-DGDGLVSFEEFARMMM 147 (149)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~ 147 (149)
+.+.-+..|..+++++++..+...-. ..+|..+.+.|.+++.
T Consensus 89 l~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~ 131 (154)
T PF13624_consen 89 LLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLK 131 (154)
T ss_dssp HHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 33444456777777777777666311 1125555566655554
No 292
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=25.02 E-value=1.4e+02 Score=19.16 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=8.4
Q ss_pred CCCCCccHHHHHHHHHHh
Q 032008 23 DSDGLITMKDLATVIQSA 40 (149)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~ 40 (149)
+|+|.+.+-=+..+|...
T Consensus 127 DGNGRt~Rll~~l~L~~~ 144 (186)
T TIGR02613 127 NGNGRHARLATDLLLEQQ 144 (186)
T ss_pred CCCcHHHHHHHHHHHHHC
Confidence 455555544444444444
No 293
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=2.1e+02 Score=18.85 Aligned_cols=79 Identities=20% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccH
Q 032008 24 SDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISA 103 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 103 (149)
=+|.|+.++....+...++ ..++..+++.. -++.+++.+....|-..++..-++.+..+...+-.+ -..
T Consensus 10 FDGTITl~Ds~~~itdtf~----~~e~k~l~~~v---ls~tiS~rd~~g~mf~~i~~s~~Eile~llk~i~Id----p~f 78 (220)
T COG4359 10 FDGTITLNDSNDYITDTFG----PGEWKALKDGV---LSKTISFRDGFGRMFGSIHSSLEEILEFLLKDIKID----PGF 78 (220)
T ss_pred CCCceEecchhHHHHhccC----chHHHHHHHHH---hhCceeHHHHHHHHHHhcCCCHHHHHHHHHhhcccC----ccH
Confidence 3689999999888765522 22333444333 467799998888777666666555555444422221 124
Q ss_pred HHHHHHHHHh
Q 032008 104 AELRNVMMNL 113 (149)
Q Consensus 104 ~e~~~~l~~~ 113 (149)
.+|.+..+.-
T Consensus 79 Kef~e~ike~ 88 (220)
T COG4359 79 KEFVEWIKEH 88 (220)
T ss_pred HHHHHHHHHc
Confidence 4555555554
No 294
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=24.84 E-value=1.6e+02 Score=17.40 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHH
Q 032008 15 EAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLT 72 (149)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 72 (149)
..+-..-..++..++.+++..+|... |..+....+..+...+.. .+.++++.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34444445566678999999999988 888888877777777632 56666654
No 295
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=24.59 E-value=80 Score=18.10 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.5
Q ss_pred ccHHHHHHHHHHh
Q 032008 101 ISAAELRNVMMNL 113 (149)
Q Consensus 101 i~~~e~~~~l~~~ 113 (149)
+|.+|+..++...
T Consensus 36 ~s~~eL~~~l~~~ 48 (105)
T cd03035 36 LDAATLERWLAKV 48 (105)
T ss_pred CCHHHHHHHHHHh
Confidence 4444444444433
No 296
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.53 E-value=1.6e+02 Score=17.42 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQMIREA 129 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
-|..|++.++..-+..+++++++.++.-.
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35667777777777777777777776544
No 297
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=24.49 E-value=1.1e+02 Score=15.60 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=11.0
Q ss_pred hhHHHHHH-HHHHHhhhcCCC
Q 032008 5 LTEDQIAE-FQEAFCMIDKDS 24 (149)
Q Consensus 5 l~~~~~~~-l~~~f~~~d~~~ 24 (149)
||+.+.-. +..+|..++...
T Consensus 3 L~~~ERl~Lve~LwdSL~~~~ 23 (63)
T TIGR02574 3 LSPDERIQLVEDIWDSIAAEA 23 (63)
T ss_pred CCHHHHHHHHHHHHHHhccCc
Confidence 44444443 456777776443
No 298
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=24.38 E-value=2.1e+02 Score=18.53 Aligned_cols=20 Identities=10% Similarity=0.351 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHHHHHhCC
Q 032008 96 DQDGFISAAELRNVMMNLGE 115 (149)
Q Consensus 96 ~~~g~i~~~e~~~~l~~~~~ 115 (149)
.....||..+|..++-++|.
T Consensus 71 k~~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 71 KNTNVITIPDFYKFLARFGP 90 (181)
T ss_dssp SS-SEEEHHHHHHHHHHSSS
T ss_pred CCCceeeHHHHHHHHHHhCC
Confidence 33556666666666666663
No 299
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.26 E-value=1.4e+02 Score=16.57 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 032008 101 ISAAELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
|+.+++..+.+-....++++++..+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455566665555556666554444
No 300
>COG1438 ArgR Arginine repressor [Transcription]
Probab=24.09 E-value=1.4e+02 Score=18.71 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 99 GFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 99 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
..=|.+|+...|...|+.+++.-+..-++.+.
T Consensus 19 ~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkelg 50 (150)
T COG1438 19 KISTQEELVELLQEEGIEVTQATVSRDLKELG 50 (150)
T ss_pred CCCCHHHHHHHHHHcCCeEehHHHHHHHHHcC
Confidence 45678889999998888888888888888765
No 301
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=2.2e+02 Score=18.99 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=40.4
Q ss_pred CCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 60 DGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 60 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
++.+.+....|+..+....+. .+ -+-.|.+|+...+++...++..+..++.+.+..+...-+
T Consensus 28 ~~~~~~~~SK~lS~vLRH~p~--------~~-gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 28 NEKERVKLSKFLSGVLRHFPE--------AI-GLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred CcchhhhHHHHHHHHHhcChH--------Hc-CeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 344555566665555433221 11 122467899999999999999888888888777766554
No 302
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=23.93 E-value=1.6e+02 Score=18.60 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREA 129 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
..+..++..+-.++...++..+|...+- +|+.++++++......+
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 4556666666544445677777765443 46778888877766654
No 303
>PRK10945 gene expression modulator; Provisional
Probab=23.74 E-value=1.3e+02 Score=16.10 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=13.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhC
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLG 114 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 114 (149)
+.+..+|... ...++-.|+..+..+..
T Consensus 22 eTLEkvie~~----~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 22 DTLERVIEKN----KYELSDDELAVFYSAAD 48 (72)
T ss_pred HHHHHHHHHh----hccCCHHHHHHHHHHHH
Confidence 4455555433 23455566666655543
No 304
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.67 E-value=1.3e+02 Score=17.05 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=8.6
Q ss_pred CCcccHHHHHHHHHH
Q 032008 98 DGFISAAELRNVMMN 112 (149)
Q Consensus 98 ~g~i~~~e~~~~l~~ 112 (149)
+|.|+.+||..-|..
T Consensus 37 ~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 37 NGTITAEEFTSRLQE 51 (92)
T ss_pred hCCCCHHHHHHHHHH
Confidence 355666666655554
No 305
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=23.30 E-value=2.3e+02 Score=18.78 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHH---hhcccC
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMG---RKMKEN 81 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~---~~~~~~ 81 (149)
-+.+....+..+-..+-. +--+..+.|...........-..+....++..+-.= ......|-.++. ..+...
T Consensus 7 ~~~d~~~~l~~v~~~iK~--~~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m---~~~i~~~n~fl~~~~~~~~~~ 81 (205)
T PF12238_consen 7 SSKDALKALKKVLDLIKE--NPPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLM---KHKISHMNAFLNDWPPHMLEE 81 (205)
T ss_pred hhHHHHHHHHHHHHHHcc--CCCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHH---HHHHHHHHHHHccCchhhhhc
Confidence 334444455554444422 235566667665444434444555555555444110 011222222222 111122
Q ss_pred cHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHHhC
Q 032008 82 VSEELKEAFKVFDRDQDGFI-SAAELRNVMMNLG 114 (149)
Q Consensus 82 ~~~~~~~~f~~~D~~~~g~i-~~~e~~~~l~~~~ 114 (149)
..+.+...|+..=.+.+..+ +..-+..+++.+-
T Consensus 82 ~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl 115 (205)
T PF12238_consen 82 GREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFL 115 (205)
T ss_pred cHHHHHHHHHHhccCcccccccHHHHHHHHHHHh
Confidence 23667788877766677777 8888888888764
No 306
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=23.28 E-value=2.5e+02 Score=19.06 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCC
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFD 60 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 60 (149)
+++++++++.....-++.-....++..+....+..+ +..+..+|.....+
T Consensus 144 ~~~~~v~~v~s~i~yl~~~~~~~~~~~~~~~~l~~l------e~~l~~lF~~~k~d 193 (232)
T PF09577_consen 144 RPPEQVQRVDSHISYLERLRFQQLDQKEVQEALEQL------EEDLQKLFDGVKED 193 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHH------HHHHHHHhCccccc
Confidence 567777777777777766555666666666666555 66777777666543
No 307
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=23.20 E-value=1.2e+02 Score=21.99 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCCcccHHHHHHHHHhhcccC------cHHHHHHHhhhhcCCCCCc
Q 032008 60 DGNGSIDFLEFLTIMGRKMKEN------VSEELKEAFKVFDRDQDGF 100 (149)
Q Consensus 60 ~~~g~i~~~ef~~~~~~~~~~~------~~~~~~~~f~~~D~~~~g~ 100 (149)
.+.|.++..+++.......+.. ...+....|+++.+.++|.
T Consensus 230 Eg~gevtm~dLvkn~LRmRPDRIiVGEVRG~Ea~dLL~AmnTGHdG~ 276 (355)
T COG4962 230 EGTGEVTMRDLVKNALRMRPDRIIVGEVRGVEALDLLQAMNTGHDGG 276 (355)
T ss_pred CCcceEEHHHHHHHHhhcCccceEEEEecCccHHHHHHHhccCCCCc
Confidence 4678999999877654443322 1267889999999999993
No 308
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.92 E-value=82 Score=17.70 Aligned_cols=64 Identities=19% Similarity=0.347 Sum_probs=33.9
Q ss_pred HHHHhhhhcCCCCCc---ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCceeHHHHHHHHhcC
Q 032008 86 LKEAFKVFDRDQDGF---ISAAELRNVMMNLGERLSDEETEQMIREADLDGDGLVSFEEFARMMMAF 149 (149)
Q Consensus 86 ~~~~f~~~D~~~~g~---i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 149 (149)
++.+-++++.+..-. ....-++..+..++..+-++.+..++.....++++.-+.+|....+..|
T Consensus 22 v~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~cv~~a~~~~~~~~~i~el~~~~~~~ 88 (89)
T COG1937 22 VRGIERMLEEDRDCIDVLQQIAAVRGALNGLMREVLEEHLKECVKRAVEDGDEEESIDELIKALRRY 88 (89)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHhHHHHHHHHHHhh
Confidence 445555555433211 1122333444444445556666777766555555566777777766554
No 309
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=22.82 E-value=1.6e+02 Score=16.81 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q 032008 65 IDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAELRNVMMNLG-ERLSDEETEQMIREA 129 (149)
Q Consensus 65 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 129 (149)
|.-.+|..++..+....+.+++..+-..+-..+....+..++......+- ..-+++++..+-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 66666666666665656666666666666545555456666666666553 334566666655544
No 310
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=22.81 E-value=62 Score=17.63 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=9.4
Q ss_pred CCceeHHHHHHHH
Q 032008 134 DGLVSFEEFARMM 146 (149)
Q Consensus 134 ~g~i~~~ef~~~l 146 (149)
.+.||++||+.+=
T Consensus 33 PmSIS~eeY~~LH 45 (81)
T PF10891_consen 33 PMSISFEEYIRLH 45 (81)
T ss_pred ccEeeHHHHHHHH
Confidence 5678888887653
No 311
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=22.68 E-value=1.1e+02 Score=14.96 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=21.5
Q ss_pred hhHHHHHHH---HHHHhhhcCCCCCCccHHHHHHHH
Q 032008 5 LTEDQIAEF---QEAFCMIDKDSDGLITMKDLATVI 37 (149)
Q Consensus 5 l~~~~~~~l---~~~f~~~d~~~~g~i~~~e~~~~l 37 (149)
+|...++++ .+....+...|-..|+..++...+
T Consensus 3 Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~ 38 (50)
T PF06971_consen 3 IPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEAL 38 (50)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHH
Confidence 556666665 455566667777889999988876
No 312
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.49 E-value=86 Score=13.45 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=10.9
Q ss_pred CCCccHHHHHHHHHH
Q 032008 25 DGLITMKDLATVIQS 39 (149)
Q Consensus 25 ~g~i~~~e~~~~l~~ 39 (149)
.|.||.+||...-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 388888888875543
No 313
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.42 E-value=2.5e+02 Score=18.85 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=32.3
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCCCCCccHHHHHH-HHHHhcCCCCCHHHHHHHHhhcc
Q 032008 1 MADALTEDQIAEFQEAFCMIDKDSDGLITMKDLAT-VIQSAQDEHPRKEEVQEMISEVD 58 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~-~l~~~~~~~~~~~~~~~~~~~~d 58 (149)
|+-.++++|++=++.+...+-...+..+-...+.. ......+-.+....++.++.++-
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf~ 147 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKFI 147 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45567888888887777666443233333333222 22222255667777777776653
No 314
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=22.04 E-value=1.5e+02 Score=20.90 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHhhCc--CCCCceeHHHHHHHHhcC
Q 032008 122 TEQMIREADL--DGDGLVSFEEFARMMMAF 149 (149)
Q Consensus 122 ~~~~~~~~d~--~~~g~i~~~ef~~~l~~~ 149 (149)
+..++...+. .+..+++.+||++.+.-|
T Consensus 278 ~~~il~~~~~~~~Ra~k~~~~DFlrLL~~f 307 (315)
T KOG0820|consen 278 IYNILFAGLLADKRARKMTVDDFLRLLLAF 307 (315)
T ss_pred HHHHHHhcchhhcccccCCHHHHHHHhhhh
Confidence 3445555442 456789999999987643
No 315
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.97 E-value=1.7e+02 Score=16.59 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=24.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMI 126 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (149)
+....+++.+-...-..-|...+.+.|..++.....+.++..+
T Consensus 48 eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 48 EQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 3344444444222222455777888888888777666666554
No 316
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=21.95 E-value=2.6e+02 Score=19.10 Aligned_cols=69 Identities=12% Similarity=0.332 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhh
Q 032008 5 LTEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRK 77 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 77 (149)
|++.+.+.+-+-|..+=.+..|.+-..|..-+...- ....+.+++..--..+ ...-|.|.+|+..+...
T Consensus 14 ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 82 (257)
T PRK14074 14 LLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKG-NDKLTKQELEVRAEDI---KESLIAYSDFLEDLTKI 82 (257)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcc-cchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 788899888888887777778888887877766655 5566666554322222 22347777777665443
No 317
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.68 E-value=25 Score=22.55 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 032008 84 EELKEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 84 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
+.++.+|.-||+..--..+.+++..++..-++--+..-++.+
T Consensus 49 ~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Av 90 (179)
T PF03352_consen 49 EAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAV 90 (179)
T ss_dssp HHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHH
Confidence 668889999998877778888888888766554344333333
No 318
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.66 E-value=2.7e+02 Score=18.83 Aligned_cols=89 Identities=10% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCCccHHHHHHHHHHhcCCC---------CCHHHHHHHHhhc-----cCCCCCcccHHHHHHHHHhhcccCcHHHHHHH
Q 032008 24 SDGLITMKDLATVIQSAQDEH---------PRKEEVQEMISEV-----DFDGNGSIDFLEFLTIMGRKMKENVSEELKEA 89 (149)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~---------~~~~~~~~~~~~~-----d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 89 (149)
.++.++.+.-..+++.+++.. -..+++..+-... -.+..|.|+.+.|...+........+..+.++
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHI 210 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHV 210 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeecccc
Confidence 346677777788887773221 1234444433332 23557778888887777766666655666777
Q ss_pred hhhhcCCCCCcccHHHHHHHHHH
Q 032008 90 FKVFDRDQDGFISAAELRNVMMN 112 (149)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
|..+=-..+|.--.+++++++..
T Consensus 211 YssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 211 YSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred ceeccccccCCCCHHHHHHHHHH
Confidence 75542245666666666666653
No 319
>PRK04280 arginine repressor; Provisional
Probab=21.65 E-value=1.9e+02 Score=17.90 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
.=+.+|+...|...|+.+++.-+..-++.+.
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~ 48 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQATVSRDIKELH 48 (148)
T ss_pred CCCHHHHHHHHHHcCCCeehHHHHHHHHHcC
Confidence 3578899999999999999998888777764
No 320
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=21.62 E-value=94 Score=13.59 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=10.8
Q ss_pred cccHHHHHHHHHHhCCC
Q 032008 100 FISAAELRNVMMNLGER 116 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~ 116 (149)
.++..++++.+...|..
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 35666777777766644
No 321
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=21.58 E-value=1.2e+02 Score=15.60 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=15.1
Q ss_pred CCCCCcccHHHHHHHHHhhc
Q 032008 59 FDGNGSIDFLEFLTIMGRKM 78 (149)
Q Consensus 59 ~~~~g~i~~~ef~~~~~~~~ 78 (149)
.|.+|+++...|++++....
T Consensus 5 TN~dGrLSTT~~iQffg~lv 24 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFFGALV 24 (60)
T ss_pred cCCCCcEehHHHHHHHHHHH
Confidence 46689999888888776543
No 322
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.52 E-value=2.6e+02 Score=21.26 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCc--CCCCceeHHHHHHHHh
Q 032008 105 ELRNVMMNLGERLSDEETEQMIREADL--DGDGLVSFEEFARMMM 147 (149)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~l~ 147 (149)
-+...++.+|+.++++++..+++.+-. +..+.++-+|+..++.
T Consensus 322 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~ 366 (488)
T PRK09389 322 ALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAE 366 (488)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 455667778888888888888877642 3445688888877654
No 323
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=21.28 E-value=33 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=9.1
Q ss_pred hhhhcCCCCCcccHHHHHHHH
Q 032008 90 FKVFDRDQDGFISAAELRNVM 110 (149)
Q Consensus 90 f~~~D~~~~g~i~~~e~~~~l 110 (149)
|+.+..+.+...+.++|...+
T Consensus 11 fRRFsl~r~~~~~f~ef~~ll 31 (80)
T cd06403 11 FRRFSLDRNKPGKFEDFYKLL 31 (80)
T ss_pred EEEEEeccccCcCHHHHHHHH
Confidence 444444444444444444333
No 324
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=21.17 E-value=1.5e+02 Score=15.80 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=4.5
Q ss_pred HHHHHHhhhh
Q 032008 84 EELKEAFKVF 93 (149)
Q Consensus 84 ~~~~~~f~~~ 93 (149)
+.+..+|...
T Consensus 17 eTLEkv~e~~ 26 (71)
T PRK10391 17 ESLEKLFDHL 26 (71)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 325
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=20.94 E-value=1.9e+02 Score=17.10 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 032008 100 FISAAELRNVMMNLGERLSDEETEQM 125 (149)
Q Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
-+|.+.|..-|...|+.+....+.++
T Consensus 73 GlsYS~fi~gLkkA~I~inRKvLadl 98 (118)
T COG0292 73 GLSYSRFINGLKKAGIEIDRKVLADL 98 (118)
T ss_pred CCcHHHHHHHHHHcCchhhHHHHHHH
Confidence 48999999999999988876665443
No 326
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.36 E-value=1e+02 Score=13.57 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHhCCC
Q 032008 101 ISAAELRNVMMNLGER 116 (149)
Q Consensus 101 i~~~e~~~~l~~~~~~ 116 (149)
++..|+++.+...|..
T Consensus 4 l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 4 LTVAELKEELKERGLS 19 (35)
T ss_dssp SHHHHHHHHHHHTTS-
T ss_pred CcHHHHHHHHHHCCCC
Confidence 5566777777766644
No 327
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=20.35 E-value=1.9e+02 Score=20.00 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHhhh--cCCCCCCccHHHHHHHHHHh
Q 032008 3 DALTEDQIAEFQEAFCMI--DKDSDGLITMKDLATVIQSA 40 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~--d~~~~g~i~~~e~~~~l~~~ 40 (149)
.+|++++.+++......- +.. .|.++.+++..-+..+
T Consensus 207 ~tL~~~E~~~W~~~~~~rL~~~~-~~~~tl~~~~~~i~~L 245 (269)
T PF08411_consen 207 ETLSEEEQQRWQEYCQQRLTDPD-GGWLTLEEYFQEIEEL 245 (269)
T ss_dssp GG--HHHHHHHHHHHHHHS-HHH------HHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHHH
Confidence 456666666665543222 223 5667777766655554
No 328
>PRK03341 arginine repressor; Provisional
Probab=20.21 E-value=2.5e+02 Score=17.92 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 032008 87 KEAFKVFDRDQDGFISAAELRNVMMNLGERLSDEETEQMIREAD 130 (149)
Q Consensus 87 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
..+.+.+. ..+..+.+|+...|...|+.+++.-+..-+..+.
T Consensus 18 ~~I~~li~--~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 18 ARIVAILS--RQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HHHHHHHH--HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 33344443 4567899999999999999999999888777765
No 329
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=20.17 E-value=1.6e+02 Score=15.71 Aligned_cols=32 Identities=3% Similarity=0.182 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCccHHHHHHHHHH
Q 032008 6 TEDQIAEFQEAFCMIDKDSDGLITMKDLATVIQS 39 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (149)
+.++.+.....|... -..|++..++|..++..
T Consensus 11 s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 11 SAEEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred CHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 344455444444432 23577777777777643
No 330
>PTZ00315 2'-phosphotransferase; Provisional
Probab=20.09 E-value=2.8e+02 Score=21.81 Aligned_cols=38 Identities=11% Similarity=0.251 Sum_probs=29.3
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q 032008 94 DRDQDGFISAAELRNVMMNLGERLSDEETEQMIREADL 131 (149)
Q Consensus 94 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (149)
..+.+|++..+++.+....-+..++.+.+..+...-|+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 35678999999999888766666888888888776543
No 331
>PHA03155 hypothetical protein; Provisional
Probab=20.04 E-value=2.1e+02 Score=16.97 Aligned_cols=86 Identities=6% Similarity=0.033 Sum_probs=50.1
Q ss_pred CccHHHHHHHHHHhcCCCCCHHHHHHHHhhccCCCCCcccHHHHHHHHHhhcccCcHHHHHHHhhhhcCCCCCcccHHHH
Q 032008 27 LITMKDLATVIQSAQDEHPRKEEVQEMISEVDFDGNGSIDFLEFLTIMGRKMKENVSEELKEAFKVFDRDQDGFISAAEL 106 (149)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 106 (149)
..+.+++..-|..+ ......+..-+..-...+++.++-.+=-.++..............+-..+...-.+.+|.+++
T Consensus 7 ~~tvEeLaaeL~kL---~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~vTk~q~ 83 (115)
T PHA03155 7 CADVEELEKELQKL---KIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLVSKNQC 83 (115)
T ss_pred CCCHHHHHHHHHHH---HHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 45667766666544 222223333333322345666776665555555544444444556666666666778888888
Q ss_pred HHHHHHhCC
Q 032008 107 RNVMMNLGE 115 (149)
Q Consensus 107 ~~~l~~~~~ 115 (149)
..++..+.+
T Consensus 84 ~~al~~lt~ 92 (115)
T PHA03155 84 MEAIADIKY 92 (115)
T ss_pred HHHHhcCee
Confidence 888887643
Done!