BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032009
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 17 DEMMFGAESGWVEPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCS 76
D+ +F A V PL C HLVA A + PC C ENW+CL C +V C
Sbjct: 1100 DQAIFYA----VTPLPWCPHLVAVCPIPAAGLDVTQ-PCGDCGTIQENWVCLSCYQVYCG 1154
Query: 77 RFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNAQVIPQLRPVYETAYILKFGEAP 136
R++N HMLQH+ + H + LSY DLS WC+ C AY++ Q + ++ + A+ KFGE
Sbjct: 1155 RYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDM 1211
Query: 137 P 137
P
Sbjct: 1212 P 1212
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 12 RPEEEDEMMFGAESGWVEPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCK 71
RP E+M + V PL +C HL A I T C+ CQ +E W CL C
Sbjct: 833 RPSHNLEIMDSGPAHAVVPLATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCY 891
Query: 72 EVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNAQVIPQLRPVYETAYILK 131
+ C RFVN+H + H+L ++H +ALS +DLSVWC+ CD+Y++ P L A+ K
Sbjct: 892 KYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHN---PALIGAKSAAHESK 948
Query: 132 FGEAPP 137
FGE P
Sbjct: 949 FGETMP 954
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 28 VEPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHY 87
V PL+ C HL+A A + PC C ENW+CL C +V CSR+VN HM+ H+
Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDV-SQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHH 1099
Query: 88 LETNHSVALSYSDLSVWCFTCDAYLNAQVIPQLRPVYETAYILKFGEAPP 137
+ H + LS DLS WC+ C AY++ + L+ V A+ KFGE P
Sbjct: 1100 EASEHPLVLSCVDLSTWCYVCQAYVHHE---DLQDVKNAAHQNKFGEDMP 1146
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 53 TPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
T C+ C SENW+C+ C V CSR VN H +H+ T H ++ S+SD S WC+TCD Y+
Sbjct: 32 TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91
Query: 113 N 113
+
Sbjct: 92 H 92
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 31 LTSCDHLVA-SLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLE 89
+ +C H+ L+ D + + C C W CL C V C R++ +H L+H+ E
Sbjct: 4 MDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQE 63
Query: 90 TNHSVALSYSDLSVWCFTCDAY-LNAQVIPQLRPVYETAYILK 131
++H VAL +++ V+C+ CD Y LN L+ + T +K
Sbjct: 64 SSHPVALEVNEMYVFCYLCDDYVLNDNTTGDLKLLRRTLSAIK 106
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY-LN 113
C C W CL C V C R++ +H LQH+ E +H +AL ++L V+C+ CD Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYVLN 85
Query: 114 AQVIPQLRPVYETAYILK 131
L+ + T +K
Sbjct: 86 DNATGDLKLLRSTLSAIK 103
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
C C W CL C V C R++ +H L+H+ E++H VAL +++ V+C+ CD Y+
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYV 86
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY-LN 113
C C W CL C V C R++ +H L+H+ ++ H +AL ++L V+C+ CD Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQVIPQLRPVYETAYILK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY-LN 113
C C W CL C V C R++ +H L+H+ ++ H +AL ++L V+C+ CD Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQVIPQLRPVYETAYILK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY-LN 113
C C W CL C V C R++ +H L+H+ ++ H +AL ++L V+C+ CD Y LN
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCDDYVLN 85
Query: 114 AQVIPQLRPVYETAYILK 131
L+ + T +K
Sbjct: 86 DNTTGDLKLLRSTLSAIK 103
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY-LN 113
C C W CL C V C +++ +H L+H+ E++H VA +D+ +C+ C+ Y LN
Sbjct: 26 CMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCNDYVLN 85
Query: 114 AQVIPQLRPVYETAYILKFGEAP 136
L+ + T +K + P
Sbjct: 86 DNAAGDLKSLRSTLSTIKSKKYP 108
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
C +C W CL C V C R++ H L+H+ ET H +A+ DL V+C+ C Y+
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
C C W CL C V C R++ H L+H+ ET H +A+ DL V+C+ C Y+
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCKDYV 83
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 49 PTPDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC 108
P + C C W+CL C + C R+V++H +H+ ET H+ A+ ++ VW +
Sbjct: 310 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 369
Query: 109 DAYLNAQV 116
D Y++ V
Sbjct: 370 DNYVHRLV 377
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 49 PTPDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC 108
P + C C W+CL C + C R+V++H +H+ ET H+ A+ ++ VW +
Sbjct: 311 PVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAG 370
Query: 109 DAYLNAQV 116
D Y++ V
Sbjct: 371 DNYVHRLV 378
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 25 SGWVEPLTSCDHLVASLSSDLAHIPTPDTP-CNRCQHPSENWLCLCCKEVLCSR------ 77
+ W LT+CDH++ +L + ++ D C++C W+CL C + C R
Sbjct: 144 TAWENELTTCDHII-NLPENETYVTNLDNATCSKCDLAENLWMCLTCGALSCGRKQYGGG 202
Query: 78 FVNKHMLQHYLETNHSVALSYSDLS------VWCFTCDAYLNAQVIPQLRPVYETAYILK 131
N H L HY +T H +A+ +S ++C++CD ++ P ++ ++L
Sbjct: 203 GGNGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSCD---EERIDPNIK-----THMLN 254
Query: 132 FGEAPPIHIGEHPKVE 147
FG I I + K E
Sbjct: 255 FG----IDIAKLNKTE 266
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNA 114
C C W+CL C V C R+ +KH ++HY ET H A+ VW + D Y++
Sbjct: 301 CATCGSTDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHR 360
Query: 115 QV 116
V
Sbjct: 361 LV 362
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 55 CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
CN C ++ W+CL C + C R+ +H +H+ T+H+ +L VW + D Y+
Sbjct: 310 CNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHTYSLKVGGERVWDYAGDNYV 367
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 53 TPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYL 112
+ C C + + W+CL C + C R+ + H QHY++T H A+ VW + D Y+
Sbjct: 260 SKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYV 319
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 34 CDHLVAS--LSSDLAHIPTPDTP---CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYL 88
C HL +S ++ D A P C+ C+ W+CL C V C R+VN H +HY
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 89 E----------------TNHSVALSYSDLSVWCFTCDAYL 112
+ H+V + S S +C+ CD ++
Sbjct: 63 DAQIPLLNHKRSEKQEKAQHTVCMDCSSYSTYCYRCDDFV 102
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 34 CDHLVAS--LSSDLAHIPTPDTP---CNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYL 88
C HL +S ++ D A P C+ C+ W+CL C V C R+VN H +HY
Sbjct: 3 CPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYE 62
Query: 89 E----------------TNHSVALSYSDLSVWCFTCDAYL 112
+ H+V + S S +C+ CD ++
Sbjct: 63 DAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFV 102
>sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16
PE=2 SV=1
Length = 815
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 65 WLCLCCKEVLCSRFVNKHMLQHYLETN---HSVALSYSDLSVWCFTCDAYLN-------A 114
W+CL C C R N+H ++HY H + LS SVWC+ CD + A
Sbjct: 74 WMCLKCGHRGCGRSGNQHAIKHYETPRSEPHCLVLSLDVWSVWCYICDDEVQYSSTGQLA 133
Query: 115 QVIPQLRPVYETA 127
Q+I +R TA
Sbjct: 134 QLITNIRKQVLTA 146
>sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16
PE=2 SV=1
Length = 826
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 65 WLCLCCKEVLCSRFVN-KHMLQHYLETN---HSVALSYSDLSVWCFTCDA---YLNAQVI 117
WLCL C C R +H L+HY++ H + LS + SVWC+ CD Y N+ +
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLCDDEVHYCNSNRL 131
Query: 118 PQL 120
Q+
Sbjct: 132 GQV 134
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16
PE=1 SV=1
Length = 823
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 65 WLCLCCKEVLCSRFVN-KHMLQHYLETN---HSVALSYSDLSVWCFTCD 109
WLCL C C R +H L+HYL H + LS + SVWC+ CD
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD 120
>sp|Q4R6X7|UBP16_MACFA Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis
GN=USP16 PE=2 SV=2
Length = 826
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 65 WLCLCCKEVLCSRFVN-KHMLQHYLETN---HSVALSYSDLSVWCFTCD 109
WLCL C C R +H L+HYL H + LS + SVWC+ CD
Sbjct: 72 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYICD 120
>sp|Q99LG0|UBP16_MOUSE Ubiquitin carboxyl-terminal hydrolase 16 OS=Mus musculus GN=Usp16
PE=1 SV=1
Length = 825
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 52 DTPCNRCQHPSENWLCLCCKEVLCSRFVN-KHMLQHYLETN---HSVALSYSDLSVWCFT 107
D P + PS WLCL C C R +H L+HY H + LS + SVWC+
Sbjct: 59 DKPEEEAEDPSV-WLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYK 117
Query: 108 CD 109
CD
Sbjct: 118 CD 119
>sp|Q2KJ09|UBP16_RAT Ubiquitin carboxyl-terminal hydrolase 16 OS=Rattus norvegicus
GN=Usp16 PE=2 SV=2
Length = 826
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 65 WLCLCCKEVLCSRFVN-KHMLQHYLETN---HSVALSYSDLSVWCFTCD 109
WLCL C C R +H L+HY H + LS + SVWC+ CD
Sbjct: 71 WLCLKCGHQGCGRDSQEQHALKHYTTPRSEPHYLVLSLDNWSVWCYKCD 119
>sp|Q8K387|UBP45_MOUSE Ubiquitin carboxyl-terminal hydrolase 45 OS=Mus musculus GN=Usp45
PE=2 SV=1
Length = 813
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 61 PSENWLCLCCKEVLCSRFV-NKHMLQHYLETN---HSVALSYSDLSVWCFTCDAYL---- 112
P++ WLCL C C + ++H L+H+ + H V +S S +WC+ C+ L
Sbjct: 79 PADVWLCLKCGLQGCGKNSESQHSLRHFKSSGTESHCVVISLSTWVIWCYECNEKLSTHC 138
Query: 113 NAQVIPQL 120
N +V+ Q+
Sbjct: 139 NKKVLAQI 146
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 27 WVEPLTSCDHLVASLSSDLA-HIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------ 79
W E L + H + + D IP C++C WL L VLC ++
Sbjct: 177 WEEELQASKHAKSLVQLDNGVRIPPSGWKCSKCDLRENLWLNLTDGSVLCGKWFFDGSGG 236
Query: 80 NKHMLQHYLETNHSVALSYSDLS 102
N H ++HY ET + +A+ ++
Sbjct: 237 NGHAMEHYKETGYPLAVKLGTIT 259
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC--D 109
C C+ N W CL C V C H H ET H++ ++ + L VWC+ C +
Sbjct: 31 CQDCKVGGPNLWACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYACTKE 90
Query: 110 AYLNAQVIP 118
+L ++ P
Sbjct: 91 VFLERKLGP 99
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC--D 109
C C+ N W CL C V C H H ET H + ++ + L VWC+ C +
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 89
Query: 110 AYLNAQV-----IPQLRPVYE 125
+L+ ++ +P ++P+++
Sbjct: 90 VFLDRKLGTQPSLPHVKPLHQ 110
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 48 IPTPDTPCNRCQHPSENWLCLCCKEVLCSR------FVNKHMLQHYLETNHSVALSYSDL 101
IP C++C WL L +LC R N H ++HY ET + +A+ +
Sbjct: 173 IPPSGWKCSKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAVEHYKETAYPLAVKLGTI 232
Query: 102 SVWCFTCDAY 111
+ D Y
Sbjct: 233 TADLEAADVY 242
>sp|Q70EL2|UBP45_HUMAN Ubiquitin carboxyl-terminal hydrolase 45 OS=Homo sapiens GN=USP45
PE=1 SV=3
Length = 814
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 62 SENWLCLCCKEVLCSRFV-NKHMLQHYLETN---HSVALSYSDLSVWCFTCDAYL----N 113
S+ WLCL C C + ++H L+H+ + H + ++ S +WC+ CD L N
Sbjct: 80 SDIWLCLKCGFQGCGKNSESQHSLKHFKSSRTEPHCIIINLSTWIIWCYECDEKLSTHCN 139
Query: 114 AQVIPQL 120
+V+ Q+
Sbjct: 140 KKVLAQI 146
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 31/134 (23%)
Query: 1 MATSSSTQLENRPEEEDEMMFGAES--------GWVEPLTSCDHLVASLSSDLAHIPT-P 51
++ S+ + + + E+ E + A+S WV +++C H ++ IP+ P
Sbjct: 130 LSKSTDSDISSTALEKIEKILKAKSQDFEDKKNSWVLEISTCPH------TENFQIPSKP 183
Query: 52 DTP-----CNRCQHPSENWLCLCCKEVLCSR-----FVNKHMLQHYL-ETNHSVALSYSD 100
+ C+ C WLCL C + C R + H L HY NH +A+
Sbjct: 184 ENTVNLNQCSSCDLTQNLWLCLHCGNIGCGREQIGIDGHSHALDHYRSNNNHPLAIKLGS 243
Query: 101 LS-----VWCFTCD 109
LS ++C+ CD
Sbjct: 244 LSSSTYDLYCYACD 257
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 46 AHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETNHSVALSYS 99
A IP C++C WL L +LC R N H ++HY ET + +A+
Sbjct: 190 ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLG 249
Query: 100 DLS 102
++
Sbjct: 250 TIT 252
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 46 AHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETNHSVALSYS 99
A IP C++C WL L +LC R N H ++HY ET + +A+
Sbjct: 190 ARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLG 249
Query: 100 DLS 102
++
Sbjct: 250 TIT 252
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 47 HIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETNHSVALSYSD 100
IP C +C+ WL L VLC ++ N H L+HY E+N +A+ +
Sbjct: 184 RIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALEHYRESNFPLAVKLNT 243
Query: 101 LS 102
++
Sbjct: 244 IT 245
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 25 SGWVEPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV----- 79
S + LT D+ V IP C RC WL L VLC ++
Sbjct: 189 SKYANNLTQLDNGV--------RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG 240
Query: 80 -NKHMLQHYLETNHSVALSYSDLS 102
N H L+HY +T + +A+ ++
Sbjct: 241 GNGHALEHYRDTGYPLAVKLGTIT 264
>sp|Q0VA64|UBP16_XENTR Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis
GN=usp16 PE=2 SV=1
Length = 864
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 65 WLCLCCKEVLCSR-FVNKHMLQHY---LETNHSVALSYSDLSVWCFTCD 109
WLCL C C R ++H L HY H + LS S WC+ CD
Sbjct: 69 WLCLKCGHRGCGRNSASQHALNHYNTPRSEPHCLVLSMDMWSAWCYLCD 117
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 46 AHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETNHSVALSYS 99
A IP C++C WL L +LC R N H ++HY ET + +A+
Sbjct: 190 ARIPPCGWECSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLG 249
Query: 100 DLS 102
++
Sbjct: 250 TIT 252
>sp|Q6PAW2|UBP16_XENLA Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus laevis GN=usp16
PE=2 SV=1
Length = 901
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 65 WLCLCCKEVLCSR-FVNKHMLQHYLETN---HSVALSYSDLSVWCFTCD 109
WLCL C C R V +H L HY H + L+ S WC+ CD
Sbjct: 69 WLCLKCGHRGCGRNSVAQHALNHYNTPRSEPHCLVLNVDMWSAWCYLCD 117
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC--D 109
C C+ N W CL C V C H H +T H + ++ + L VWC+TC +
Sbjct: 30 CQDCRVRGPNLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWCYTCSKE 89
Query: 110 AYLNAQVIPQ 119
+L+ ++ Q
Sbjct: 90 VFLDRKLSTQ 99
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC--D 109
C C+ N W CL C V C H H ET H + ++ + L VWC+ C +
Sbjct: 61 CQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 120
Query: 110 AYLNAQVIPQ 119
+L+ ++ Q
Sbjct: 121 VFLDRKLGTQ 130
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC 108
C C+ N W CL C V C H H ET H + ++ + L VWC+ C
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYAC 86
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC--D 109
C C+ N W CL C V C H H ET H + ++ + L VWC+ C +
Sbjct: 30 CQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKE 89
Query: 110 AYLNAQVIPQ 119
+L+ ++ Q
Sbjct: 90 VFLDRKLGTQ 99
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 25 SGWVEPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV----- 79
S + LT D+ V IP C RC WL L VLC ++
Sbjct: 189 SKYANNLTQLDNGV--------RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSG 240
Query: 80 -NKHMLQHYLETNHSVALSYSDLS 102
N H L+HY + + +A+ ++
Sbjct: 241 GNGHALEHYRDMGYPLAVKLGTIT 264
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 47 HIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETNHSVALSYSD 100
IP C RC WL L VLC ++ N H L+HY + + +A+
Sbjct: 201 RIPPSGWKCARCDLRENLWLNLTDGSVLCGKWFFDSSGGNGHALEHYRDMGYPLAVKLGT 260
Query: 101 LS 102
++
Sbjct: 261 IT 262
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCD 109
C C N W CL C V C H H H++ ++ + VWC+ C+
Sbjct: 30 CQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQAKKHNLTVNLTTFRVWCYACE 87
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 55 CNRCQHPSEN-WLCL--CCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCD 109
C C N W CL C+ V C H H H++ ++ + VWC+ C+
Sbjct: 30 CESCGVGGPNLWACLQDGCQSVGCGESYVDHSTLHAQAKKHNLTVNLTTFRVWCYACE 87
>sp|Q2M1P5|KIF7_HUMAN Kinesin-like protein KIF7 OS=Homo sapiens GN=KIF7 PE=1 SV=2
Length = 1343
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 13 PEEEDEMMFGAESGWVEPLTSCDHLVASLSSDLAHIPTPDT 53
P EDE+ E W+ PLT + DL H P P T
Sbjct: 1236 PGNEDELHLAPELLWLSPLTEGAPRTREETRDLVHAPLPLT 1276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,736,551
Number of Sequences: 539616
Number of extensions: 2301912
Number of successful extensions: 4957
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 4897
Number of HSP's gapped (non-prelim): 85
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)