Query 032009
Match_columns 149
No_of_seqs 143 out of 897
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5k_A HD6, histone deacetylas 100.0 5.9E-34 2E-38 207.1 12.0 108 29-140 2-109 (109)
2 2g45_A Ubiquitin carboxyl-term 100.0 1.4E-32 4.9E-37 205.1 9.8 110 21-139 1-124 (129)
3 2uzg_A Ubiquitin carboxyl-term 99.9 6.2E-27 2.1E-31 166.7 5.6 82 31-113 3-89 (97)
4 2ida_A Hypothetical protein; z 99.9 7.9E-27 2.7E-31 167.8 6.0 85 33-122 4-97 (102)
5 2i50_A Ubiquitin carboxyl-term 99.9 2.3E-26 7.9E-31 170.8 4.5 94 32-125 5-119 (126)
6 3ihp_A Ubiquitin carboxyl-term 99.9 2.1E-24 7.2E-29 199.9 10.7 113 17-138 178-304 (854)
7 3mhs_A Ubiquitin carboxyl-term 99.8 3E-20 1E-24 159.7 1.9 64 52-117 48-113 (476)
8 3ihp_A Ubiquitin carboxyl-term 97.1 0.00049 1.7E-08 63.9 5.8 60 35-99 30-93 (854)
9 1wg2_A Zinc finger (AN1-like) 83.6 1.7 5.8E-05 28.1 4.3 26 51-77 14-41 (64)
10 1wfh_A Zinc finger (AN1-like) 82.7 1.7 5.9E-05 28.1 4.1 26 51-77 14-41 (64)
11 1wfp_A Zinc finger (AN1-like) 81.4 2 6.8E-05 28.6 4.1 26 51-77 24-51 (74)
12 2xzl_A ATP-dependent helicase 81.3 1.7 5.8E-05 39.9 5.0 59 52-110 11-79 (802)
13 1x4w_A Hypothetical protein FL 75.2 1.8 6.1E-05 28.3 2.3 26 51-77 14-44 (67)
14 2wjy_A Regulator of nonsense t 74.9 2.9 0.0001 38.4 4.5 59 52-110 6-74 (800)
15 1wff_A Riken cDNA 2810002D23 p 71.6 5.8 0.0002 26.9 4.3 26 51-77 24-52 (85)
16 2jun_A Midline-1; B-BOX, TRIM, 52.7 12 0.0004 24.7 3.1 39 53-95 4-49 (101)
17 1wfl_A Zinc finger protein 216 51.8 19 0.00066 23.7 3.9 26 51-77 24-51 (74)
18 1vq8_Z 50S ribosomal protein L 51.8 7.6 0.00026 26.0 2.0 26 52-77 27-58 (83)
19 2akl_A PHNA-like protein PA012 41.7 17 0.00057 26.7 2.6 24 51-74 26-54 (138)
20 1dl6_A Transcription factor II 41.6 14 0.00047 22.8 1.9 22 54-75 13-41 (58)
21 4gzn_C ZFP-57, zinc finger pro 41.2 7.1 0.00024 23.8 0.5 15 62-76 30-44 (60)
22 2ct2_A Tripartite motif protei 39.4 39 0.0013 21.1 3.9 59 51-122 14-76 (88)
23 2lce_A B-cell lymphoma 6 prote 39.2 12 0.00042 22.4 1.4 26 62-87 43-69 (74)
24 3j21_i 50S ribosomal protein L 35.9 25 0.00084 23.6 2.5 26 52-77 35-66 (83)
25 6rxn_A Rubredoxin; electron tr 35.2 15 0.00051 21.9 1.2 13 63-75 3-15 (46)
26 3cc2_Z 50S ribosomal protein L 35.1 19 0.00065 25.7 2.0 27 51-77 59-91 (116)
27 3izc_m 60S ribosomal protein R 34.5 27 0.00091 23.9 2.6 27 51-77 35-67 (92)
28 3iz5_m 60S ribosomal protein L 34.2 27 0.00093 23.9 2.6 26 52-77 36-67 (92)
29 4ap4_A E3 ubiquitin ligase RNF 33.1 16 0.00055 24.5 1.3 51 26-76 43-103 (133)
30 2czr_A TBP-interacting protein 32.5 19 0.00064 28.1 1.7 25 105-137 157-181 (226)
31 1ffk_W Ribosomal protein L37AE 32.4 22 0.00075 23.3 1.8 27 51-77 26-58 (73)
32 2yqq_A Zinc finger HIT domain- 32.4 53 0.0018 20.3 3.5 25 51-76 11-35 (56)
33 2ysl_A Tripartite motif-contai 32.4 32 0.0011 20.8 2.5 50 51-113 19-68 (73)
34 4a17_Y RPL37A, 60S ribosomal p 30.8 27 0.00091 24.5 2.1 26 52-77 36-67 (103)
35 3jyw_9 60S ribosomal protein L 30.4 25 0.00084 23.0 1.8 26 52-77 26-57 (72)
36 2ysj_A Tripartite motif-contai 29.4 34 0.0012 20.1 2.3 26 51-76 19-44 (63)
37 1pft_A TFIIB, PFTFIIBN; N-term 29.1 39 0.0013 19.6 2.4 21 54-74 7-34 (50)
38 3v2d_5 50S ribosomal protein L 28.8 21 0.00071 22.4 1.2 24 50-73 28-52 (60)
39 2m0e_A Zinc finger and BTB dom 28.8 11 0.00037 17.5 -0.2 23 65-87 3-26 (29)
40 3uk3_C Zinc finger protein 217 28.5 22 0.00077 19.7 1.2 11 64-74 32-42 (57)
41 1bbo_A Human enhancer-binding 28.3 13 0.00045 20.8 0.1 13 63-75 28-40 (57)
42 1x6e_A Zinc finger protein 24; 27.7 25 0.00084 20.9 1.4 26 63-88 41-67 (72)
43 1x4u_A Zinc finger, FYVE domai 27.2 46 0.0016 21.5 2.8 25 53-77 15-43 (84)
44 1x5w_A Zinc finger protein 64, 27.1 28 0.00097 20.4 1.6 27 63-89 36-63 (70)
45 3by4_A OTU1, ubiquitin thioest 26.7 14 0.00047 28.5 0.0 27 65-94 181-207 (212)
46 3j21_g 50S ribosomal protein L 26.2 31 0.0011 21.0 1.6 21 53-73 15-37 (51)
47 2m0f_A Zinc finger and BTB dom 25.8 16 0.00053 17.0 0.1 23 65-87 3-26 (29)
48 1y02_A CARP2, FYVE-ring finger 25.8 37 0.0013 24.0 2.2 26 52-77 19-48 (120)
49 1yk4_A Rubredoxin, RD; electro 25.8 25 0.00084 21.3 1.1 13 64-76 2-14 (52)
50 2d8v_A Zinc finger FYVE domain 25.7 27 0.00094 22.6 1.3 39 53-94 9-49 (67)
51 3pwf_A Rubrerythrin; non heme 25.6 25 0.00086 26.1 1.3 14 62-75 136-149 (170)
52 1chc_A Equine herpes virus-1 r 25.5 84 0.0029 18.5 3.6 26 51-76 4-30 (68)
53 2ffw_A Midline-1; B-BOX, ring 25.5 38 0.0013 21.8 2.0 39 52-94 30-75 (78)
54 1vfy_A Phosphatidylinositol-3- 25.4 36 0.0012 21.5 1.9 25 53-77 12-40 (73)
55 2v3b_B Rubredoxin 2, rubredoxi 24.9 25 0.00086 21.5 1.0 14 63-76 2-15 (55)
56 2d8t_A Dactylidin, ring finger 24.8 49 0.0017 20.0 2.4 25 52-76 15-39 (71)
57 3t7l_A Zinc finger FYVE domain 24.7 40 0.0014 22.3 2.1 25 53-77 21-49 (90)
58 2ecj_A Tripartite motif-contai 24.6 37 0.0013 19.4 1.8 26 51-76 14-39 (58)
59 1t1h_A Gspef-atpub14, armadill 24.4 63 0.0021 19.7 2.9 48 51-113 7-54 (78)
60 1bor_A Transcription factor PM 24.4 44 0.0015 19.5 2.1 26 52-77 6-31 (56)
61 2b0o_E UPLC1; arfgap, structur 24.3 52 0.0018 25.6 3.0 50 51-104 41-90 (301)
62 2d8q_A BLU protein, zinc finge 23.6 54 0.0018 20.7 2.5 35 51-89 14-49 (70)
63 2lvt_A Zinc finger and BTB dom 29.2 17 0.00058 17.1 0.0 23 65-87 3-26 (29)
64 2ecv_A Tripartite motif-contai 23.5 56 0.0019 19.9 2.6 54 51-114 18-71 (85)
65 2lvr_A Zinc finger and BTB dom 29.2 17 0.00058 17.0 0.0 23 65-87 4-27 (30)
66 2ecn_A Ring finger protein 141 23.4 64 0.0022 19.2 2.8 25 51-76 14-38 (70)
67 2ecm_A Ring finger and CHY zin 23.0 80 0.0027 17.6 3.0 25 52-76 5-33 (55)
68 2kiz_A E3 ubiquitin-protein li 22.9 65 0.0022 19.1 2.7 48 51-114 13-63 (69)
69 2yw8_A RUN and FYVE domain-con 22.5 43 0.0015 21.6 1.9 25 53-77 20-48 (82)
70 2zjr_Z 50S ribosomal protein L 22.4 29 0.00097 21.7 0.9 24 50-73 28-52 (60)
71 1qxf_A GR2, 30S ribosomal prot 22.3 52 0.0018 21.2 2.2 26 52-77 7-39 (66)
72 1wfk_A Zinc finger, FYVE domai 22.2 54 0.0019 21.6 2.4 25 53-77 10-38 (88)
73 1joc_A EEA1, early endosomal a 22.1 47 0.0016 23.3 2.1 25 53-77 70-98 (125)
74 3j20_Y 30S ribosomal protein S 22.0 53 0.0018 19.6 2.1 22 53-74 20-47 (50)
75 1dx8_A Rubredoxin; electron tr 21.9 31 0.0011 22.2 1.1 14 62-75 5-18 (70)
76 1e8j_A Rubredoxin; iron-sulfur 21.8 29 0.001 21.0 0.8 12 64-75 3-14 (52)
77 1rik_A E6APC1 peptide; E6-bind 21.7 22 0.00074 16.5 0.2 12 65-76 3-14 (29)
78 2els_A Zinc finger protein 406 21.4 22 0.00075 17.8 0.2 25 62-86 7-32 (36)
79 1yuz_A Nigerythrin; rubrythrin 21.3 29 0.001 26.4 1.0 15 62-76 169-183 (202)
80 1wys_A Riken cDNA 2310008M20 p 21.2 1.2E+02 0.0041 19.7 3.8 27 51-77 13-42 (75)
81 2yur_A Retinoblastoma-binding 21.2 61 0.0021 19.8 2.4 46 52-111 15-61 (74)
82 1z2q_A LM5-1; membrane protein 20.9 54 0.0019 21.2 2.1 25 53-77 22-50 (84)
83 2lvu_A Zinc finger and BTB dom 26.0 21 0.00072 16.3 0.0 11 65-75 3-13 (26)
84 2iqj_A Stromal membrane-associ 20.5 62 0.0021 23.2 2.5 50 51-104 26-75 (134)
85 2lri_C Autoimmune regulator; Z 20.5 1.2E+02 0.004 18.9 3.6 48 51-110 11-58 (66)
86 2csy_A Zinc finger protein 183 20.4 68 0.0023 19.8 2.5 46 52-113 15-60 (81)
87 2kn9_A Rubredoxin; metalloprot 20.2 35 0.0012 22.8 1.0 15 62-76 25-39 (81)
88 1s24_A Rubredoxin 2; electron 20.0 40 0.0014 22.7 1.3 15 62-76 33-47 (87)
89 4rxn_A Rubredoxin; electron tr 20.0 37 0.0013 20.8 1.0 12 64-75 3-14 (54)
No 1
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=100.00 E-value=5.9e-34 Score=207.11 Aligned_cols=108 Identities=42% Similarity=0.779 Sum_probs=94.3
Q ss_pred cCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCC
Q 032009 29 EPLTSCDHLVASLSSDLAHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTC 108 (149)
Q Consensus 29 ~~~~~CpHl~~~l~~~~~~i~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~C 108 (149)
++...|||+ .++.+.........+.|.+|+...++|+||+||++||||+.++||++||++++|+++|++++++||||.|
T Consensus 2 ~~~~~C~Hl-~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~c 80 (109)
T 3c5k_A 2 SPLPWCPHL-VAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYC 80 (109)
T ss_dssp CCBSCCTTG-GGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTT
T ss_pred CCCCCCcCc-ccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCC
Confidence 466899999 6776643223335788999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccccCCchhhhHHHHHHhhCCCCCCCC
Q 032009 109 DAYLNAQVIPQLRPVYETAYILKFGEAPPIHI 140 (149)
Q Consensus 109 d~~V~~~~~~~L~~~~~~~hl~kfg~~~~~~~ 140 (149)
|+||+++ .|.+...++|++||||++++.+
T Consensus 81 d~~V~~~---~L~d~~~~~hl~~fg~~~~~~~ 109 (109)
T 3c5k_A 81 QAYVHHQ---ALLDVKNIAHQNKFGEDMPHPH 109 (109)
T ss_dssp TEEBCCG---GGHHHHHHHHHHHHCSCCSSCC
T ss_pred CCEEecc---cccChHHHHHHHHhCCCCCCCC
Confidence 9999874 4667778999999999999853
No 2
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.98 E-value=1.4e-32 Score=205.07 Aligned_cols=110 Identities=25% Similarity=0.422 Sum_probs=87.6
Q ss_pred hcCccccccCC-CCCcccccccccCC--CCCCCCCCCCCCCCCCCCceeccccCeeeecCCC------ChhHHHHhhhcC
Q 032009 21 FGAESGWVEPL-TSCDHLVASLSSDL--AHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRFV------NKHMLQHYLETN 91 (149)
Q Consensus 21 ~~~~~~w~~~~-~~CpHl~~~l~~~~--~~i~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~------~~Ha~~H~~~t~ 91 (149)
++++++|+.+. ..|||+ ..|.+.. ..+++..++|.+|....+||+||+||+|||||+. ++||++||++++
T Consensus 1 ~~~~~~W~~e~~~~C~h~-~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~ 79 (129)
T 2g45_A 1 KQEVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETG 79 (129)
T ss_dssp ----------CCEECTTT-TTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHC
T ss_pred ChHHHhhcCCCCCCCCCc-CcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcC
Confidence 35678898665 789999 6776642 3455577899999999999999999999999975 999999999999
Q ss_pred CeeEEECCCC-----cEEEcCCCceecccccCCchhhhHHHHHHhhCCCCCCC
Q 032009 92 HSVALSYSDL-----SVWCFTCDAYLNAQVIPQLRPVYETAYILKFGEAPPIH 139 (149)
Q Consensus 92 H~l~v~l~t~-----~vwCY~Cd~~V~~~~~~~L~~~~~~~hl~kfg~~~~~~ 139 (149)
|||+|+|+|+ +||||.||+||.+ |+| +.||++|||+++-.
T Consensus 80 H~l~v~l~t~~~~~~~vwcY~cd~~V~d---p~L-----~~hl~~fgi~~~~~ 124 (129)
T 2g45_A 80 YPLAVKLGTITPDGADVYSYDEDDMVLD---PSL-----AEHLSHFGIDMLKM 124 (129)
T ss_dssp CCEEEETTCCBTTBCCEEETTTTEEEEC---TTH-----HHHHHTTTCCTTTC
T ss_pred CCEEEECCCCCCCCCeEEECCCCCEeEC---ccH-----HHHHHHHCCChhhh
Confidence 9999999994 9999999999975 667 89999999998754
No 3
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.93 E-value=6.2e-27 Score=166.71 Aligned_cols=82 Identities=28% Similarity=0.591 Sum_probs=70.2
Q ss_pred CCCCcccccccccCCC--CCCCCCCCCCCCC-CCCCceeccc--cCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEE
Q 032009 31 LTSCDHLVASLSSDLA--HIPTPDTPCNRCQ-HPSENWLCLC--CKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWC 105 (149)
Q Consensus 31 ~~~CpHl~~~l~~~~~--~i~~~~~~C~~C~-~~~~lW~CL~--Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwC 105 (149)
...|||+ ..+.+... .+++..++|.+|+ ...++|+||+ ||+|||||+.++||++||++++|+|+|+++|++|||
T Consensus 3 ~~~C~Hl-~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwC 81 (97)
T 2uzg_A 3 RNHCPHL-DSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC 81 (97)
T ss_dssp CCSCHHH-HHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEE
T ss_pred CCCCcCc-chhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEE
Confidence 3689999 56654321 1223678999999 6678999999 999999999999999999999999999999999999
Q ss_pred cCCCceec
Q 032009 106 FTCDAYLN 113 (149)
Q Consensus 106 Y~Cd~~V~ 113 (149)
|.||+||.
T Consensus 82 y~cdd~V~ 89 (97)
T 2uzg_A 82 YACSKEVF 89 (97)
T ss_dssp TTTTEEEC
T ss_pred CCCCcEee
Confidence 99999984
No 4
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.93 E-value=7.9e-27 Score=167.76 Aligned_cols=85 Identities=22% Similarity=0.575 Sum_probs=71.2
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCC----CceeccccCeeeecCC-CChhHHHHhhhcCCeeEEECC--CCcEEE
Q 032009 33 SCDHLVASLSSDLAHIPTPDTPCNRCQHPS----ENWLCLCCKEVLCSRF-VNKHMLQHYLETNHSVALSYS--DLSVWC 105 (149)
Q Consensus 33 ~CpHl~~~l~~~~~~i~~~~~~C~~C~~~~----~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~t~H~l~v~l~--t~~vwC 105 (149)
.|||+ ..+.. +++..++|.+|...+ +||+||+||+|||||+ +++||++||++++|||+++++ +.+|||
T Consensus 4 ~C~Hl-~~~~~----~~p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwc 78 (102)
T 2ida_A 4 GCRHV-AGIRT----VTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWC 78 (102)
T ss_dssp CCGGG-GGCCC----CCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEE
T ss_pred cCcCc-ccccc----CCCCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEE
Confidence 59999 45543 334678999999886 8999999999999997 999999999999999999988 579999
Q ss_pred cCCCceecc--cccCCchh
Q 032009 106 FTCDAYLNA--QVIPQLRP 122 (149)
Q Consensus 106 Y~Cd~~V~~--~~~~~L~~ 122 (149)
|.||+||.+ +..+.|.+
T Consensus 79 Y~cd~~V~~p~~~~~~~~~ 97 (102)
T 2ida_A 79 YVDEVMFDLSDRMTPHNGP 97 (102)
T ss_dssp TTTTEEEECTTTCCCCSSC
T ss_pred cCCCcEEECccccccccCC
Confidence 999999976 33455543
No 5
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.92 E-value=2.3e-26 Score=170.80 Aligned_cols=94 Identities=32% Similarity=0.672 Sum_probs=76.6
Q ss_pred CCCcccccccccC-C-CC-CCCCCCCCCCCCC--------------CCCceeccccCeeeecCC-CChhHHHHhhh---c
Q 032009 32 TSCDHLVASLSSD-L-AH-IPTPDTPCNRCQH--------------PSENWLCLCCKEVLCSRF-VNKHMLQHYLE---T 90 (149)
Q Consensus 32 ~~CpHl~~~l~~~-~-~~-i~~~~~~C~~C~~--------------~~~lW~CL~Cg~vgCgr~-~~~Ha~~H~~~---t 90 (149)
..|||+...+.+. . .. .+...+.|.+|.. ..+||+||+||+|||||+ .++||++||++ +
T Consensus 5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t 84 (126)
T 2i50_A 5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSE 84 (126)
T ss_dssp CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCSS
T ss_pred CCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCCC
Confidence 6899995433321 1 11 1223477999986 689999999999999997 78999999999 8
Q ss_pred CCeeEEECCCCcEEEcCCCceecccccCCchhhhH
Q 032009 91 NHSVALSYSDLSVWCFTCDAYLNAQVIPQLRPVYE 125 (149)
Q Consensus 91 ~H~l~v~l~t~~vwCY~Cd~~V~~~~~~~L~~~~~ 125 (149)
+|||+|+++|+.||||.||+||++...+.|.++++
T Consensus 85 ~H~l~~~l~t~~vwCY~cd~~V~~~~~~~l~~~v~ 119 (126)
T 2i50_A 85 PHCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVD 119 (126)
T ss_dssp CCCEEEETTTCCEEETTTTEEECCCTTSHHHHHHH
T ss_pred CCcEEEECCCCeEEeCCCCcEEEcCcchhHHHHHH
Confidence 99999999999999999999999888888876655
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=199.95 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=85.3
Q ss_pred hhhhhcCccccccCC-CCCcccccccccCC--CCCCCCCCCCCCCCCCCCceeccccCeeeecCC------CChhHHHHh
Q 032009 17 DEMMFGAESGWVEPL-TSCDHLVASLSSDL--AHIPTPDTPCNRCQHPSENWLCLCCKEVLCSRF------VNKHMLQHY 87 (149)
Q Consensus 17 ~~~~~~~~~~w~~~~-~~CpHl~~~l~~~~--~~i~~~~~~C~~C~~~~~lW~CL~Cg~vgCgr~------~~~Ha~~H~ 87 (149)
+...+.++++|+.++ ..|+|+ ..+.|.. ..+++..++|..|....++|+||+||++||||+ +++||+.||
T Consensus 178 ~~~~~~~~~~w~~~~~~~c~h~-~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~ 256 (854)
T 3ihp_A 178 SASRKQEVQAWDGEVRQVSKHA-FSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY 256 (854)
T ss_dssp --------------CCCBCTTT-TTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHH
T ss_pred CHHHHHHHHhhcCccCCCCcCc-cccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHH
Confidence 456788899999887 999999 6776542 455567789999999999999999999999985 389999999
Q ss_pred hhcCCeeEEECCC-----CcEEEcCCCceecccccCCchhhhHHHHHHhhCCCCCC
Q 032009 88 LETNHSVALSYSD-----LSVWCFTCDAYLNAQVIPQLRPVYETAYILKFGEAPPI 138 (149)
Q Consensus 88 ~~t~H~l~v~l~t-----~~vwCY~Cd~~V~~~~~~~L~~~~~~~hl~kfg~~~~~ 138 (149)
++++|++++++.| .+||||.||+||.+ |.| +.|+++|||++..
T Consensus 257 ~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v~~---~~l-----~~~l~~~gi~~~~ 304 (854)
T 3ihp_A 257 RETGYPLAVKLGTITPDGADVYSYDEDDMVLD---PSL-----AEHLSHFGIDMLK 304 (854)
T ss_dssp HHHCCCEEEETTCCBTTBCCEEETTTTEECBC---TTH-----HHHHHHTTCCC--
T ss_pred hhcCCcEEEEcCCcCCCCCeEEEccCCCeeeC---ccH-----HHHHHHhCccccc
Confidence 9999999999999 89999999999965 556 7889999997644
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.78 E-value=3e-20 Score=159.74 Aligned_cols=64 Identities=22% Similarity=0.617 Sum_probs=58.9
Q ss_pred CCCCCCCCCC--CCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceeccccc
Q 032009 52 DTPCNRCQHP--SENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNAQVI 117 (149)
Q Consensus 52 ~~~C~~C~~~--~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~~~~~ 117 (149)
.++|.+|... .++|+||+||++|||+ ++||..|+++++|++++++.+.+||||.|++||.+..+
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l 113 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDL 113 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHH
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHH
Confidence 3569999987 7999999999999996 89999999999999999999999999999999987653
No 8
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00049 Score=63.94 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=46.2
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCC----CCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECC
Q 032009 35 DHLVASLSSDLAHIPTPDTPCNRCQHP----SENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYS 99 (149)
Q Consensus 35 pHl~~~l~~~~~~i~~~~~~C~~C~~~----~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~ 99 (149)
+|+ ..+..+...-.+.+..|..|+.+ .+|.+||.|..-+|- .|+..|++.++|++++++.
T Consensus 30 ~~~-~~~~~p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~----~~~~~~~~~~~~~~~l~i~ 93 (854)
T 3ihp_A 30 SVL-PTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGK----QYVERHFNKTGQRVYLHLR 93 (854)
T ss_dssp HTG-GGCCCCCTTCCCCCSSCSSSSCCTTSTTCEEEETTTCCEECT----TTHHHHHHHHCCCEEEEEE
T ss_pred Hhh-cCCcCCCCCCcEecccCceecCCCCCCCCeEEcccccccccH----HHHHHHHhccCCceEEEEE
Confidence 455 34443333334578889999975 689999999888883 7999999999999999754
No 9
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=83.64 E-value=1.7 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.773 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCc--eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN--WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 77 (149)
...+|..|+...+| ..| .||..+|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEeccc
Confidence 45689999987665 789 899999984
No 10
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.72 E-value=1.7 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.713 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCc--eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN--WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 77 (149)
...+|..|+...+| ..| .||..+|+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccc
Confidence 55789999987665 789 799999984
No 11
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=81.41 E-value=2 Score=28.57 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCc--eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN--WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 77 (149)
...+|..|+...++ ..| .||..+|+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cCccchhhcCcccccceEe-ccCCEeccc
Confidence 55689999987665 789 899999984
No 12
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.30 E-value=1.7 Score=39.90 Aligned_cols=59 Identities=24% Similarity=0.564 Sum_probs=46.3
Q ss_pred CCCCCCCCCC--CCceeccccCeeeecCC---CChhHHHHhhhcCCeeEEE-----CCCCcEEEcCCCc
Q 032009 52 DTPCNRCQHP--SENWLCLCCKEVLCSRF---VNKHMLQHYLETNHSVALS-----YSDLSVWCFTCDA 110 (149)
Q Consensus 52 ~~~C~~C~~~--~~lW~CL~Cg~vgCgr~---~~~Ha~~H~~~t~H~l~v~-----l~t~~vwCY~Cd~ 110 (149)
...|..|+.. ..+-.|+.|++-+|-.. ...|+..|.-.++|.-+.- ++...+=||.|..
T Consensus 11 ~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 11 DNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp -CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred hhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCC
Confidence 4579999976 67889999999999652 4589999999998865442 3455889999974
No 13
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.19 E-value=1.8 Score=28.26 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCc-----eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN-----WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l-----W~CL~Cg~vgCgr 77 (149)
...+|..|+....| ..| .||.++|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 44689999988777 589 999999984
No 14
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=74.87 E-value=2.9 Score=38.37 Aligned_cols=59 Identities=15% Similarity=0.389 Sum_probs=46.4
Q ss_pred CCCCCCCCCC--CCceeccccCeeeecCC---CChhHHHHhhhcCCeeEEE-----CCCCcEEEcCCCc
Q 032009 52 DTPCNRCQHP--SENWLCLCCKEVLCSRF---VNKHMLQHYLETNHSVALS-----YSDLSVWCFTCDA 110 (149)
Q Consensus 52 ~~~C~~C~~~--~~lW~CL~Cg~vgCgr~---~~~Ha~~H~~~t~H~l~v~-----l~t~~vwCY~Cd~ 110 (149)
...|..|+.. ..+-.|+.|++-+|-.. ..+|+..|.-.++|.-+.- ++...+=||.|..
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 6 IHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp TTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred chhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCC
Confidence 4679999986 56889999999999652 5689999999998865442 3445788999974
No 15
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=71.64 E-value=5.8 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.531 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCc---eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN---WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l---W~CL~Cg~vgCgr 77 (149)
...+|..|+....| ..| .||..+|++
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEeccc
Confidence 45689999986654 689 599999984
No 16
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=52.69 E-value=12 Score=24.69 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=27.9
Q ss_pred CCCCCCCC---CCCceeccccCeeeecCCCChhHHH-Hhhh---cCCeeE
Q 032009 53 TPCNRCQH---PSENWLCLCCKEVLCSRFVNKHMLQ-HYLE---TNHSVA 95 (149)
Q Consensus 53 ~~C~~C~~---~~~lW~CL~Cg~vgCgr~~~~Ha~~-H~~~---t~H~l~ 95 (149)
..|..|.. ....-.||.|+...|. .|... |... ..|.++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~----~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCD----ECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECH----HHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhH----HHCHHHhccCCccCCCeee
Confidence 46999984 3567889999999994 57776 6532 257665
No 17
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.83 E-value=19 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.617 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCc--eeccccCeeeecC
Q 032009 51 PDTPCNRCQHPSEN--WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~~~l--W~CL~Cg~vgCgr 77 (149)
...+|..|+...+| ..|- ||..+|+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh
Confidence 45689999986554 6788 99999984
No 18
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=51.83 E-value=7.6 Score=26.02 Aligned_cols=26 Identities=23% Similarity=0.689 Sum_probs=21.7
Q ss_pred CCCCCCCCCC------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
.-.|..|+.. .++|.|-.||+..-|.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 3469999973 6799999999998886
No 19
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.72 E-value=17 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=19.5
Q ss_pred CCCCCCCCCCC-----CCceeccccCeee
Q 032009 51 PDTPCNRCQHP-----SENWLCLCCKEVL 74 (149)
Q Consensus 51 ~~~~C~~C~~~-----~~lW~CL~Cg~vg 74 (149)
....|..|... ..+|+|..|++--
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCCeEECCcccccc
Confidence 34579999974 6899999999875
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=41.61 E-value=14 Score=22.85 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=14.7
Q ss_pred CCCCCCC-------CCCceeccccCeeee
Q 032009 54 PCNRCQH-------PSENWLCLCCKEVLC 75 (149)
Q Consensus 54 ~C~~C~~-------~~~lW~CL~Cg~vgC 75 (149)
.|..|+. ..+.++|..||.|-=
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 5777754 245678888887743
No 21
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=41.20 E-value=7.1 Score=23.79 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=9.9
Q ss_pred CCceeccccCeeeec
Q 032009 62 SENWLCLCCKEVLCS 76 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCg 76 (149)
...+.|-.||..+-.
T Consensus 30 ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 30 YRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CcCeECCCCCCCcCC
Confidence 446777777777653
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.38 E-value=39 Score=21.06 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCc----eeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceecccccCCchh
Q 032009 51 PDTPCNRCQHPSEN----WLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNAQVIPQLRP 122 (149)
Q Consensus 51 ~~~~C~~C~~~~~l----W~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~~~~~~~L~~ 122 (149)
....|..|...-.. -+-|.||+++|. .-.....+.. ....-|-.|...+....+.+|.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~----~Ci~~~~~~~---------~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICR----QCLEKLLASS---------INGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEH----HHHHHHHHHC---------SSCBCCTTTCCCBCCSSTTTSEE
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhH----HHHHHHHHcC---------CCCcCCCCCCCcccchhHHHHHH
Confidence 34568888865333 566789999995 3444444432 13466888887776655445533
No 23
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.21 E-value=12 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCceeccccCeeeecC-CCChhHHHHh
Q 032009 62 SENWLCLCCKEVLCSR-FVNKHMLQHY 87 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCgr-~~~~Ha~~H~ 87 (149)
...+.|-.||..+-.+ .-..|++.|.
T Consensus 43 ~~~~~C~~C~k~f~~~~~L~~H~~~H~ 69 (74)
T 2lce_A 43 EKPYRCNICGAQFNRPANLKTHTRIHS 69 (74)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred CCCEECCCCCchhCCHHHHHHHHHhcC
Confidence 3457888888876543 2345666664
No 24
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.86 E-value=25 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.632 Sum_probs=21.8
Q ss_pred CCCCCCCCCC------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
.-.|..|+.. .++|-|-.||+..-|.
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEeCC
Confidence 4569999874 6899999999998886
No 25
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=35.23 E-value=15 Score=21.91 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.4
Q ss_pred CceeccccCeeee
Q 032009 63 ENWLCLCCKEVLC 75 (149)
Q Consensus 63 ~lW~CL~Cg~vgC 75 (149)
..|+|..||++.=
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 3588888888753
No 26
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=35.10 E-value=19 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=22.2
Q ss_pred CCCCCCCCCCC------CCceeccccCeeeecC
Q 032009 51 PDTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
..-.|..|+.. .++|.|-.||+..-|.
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 34469999973 6899999999998876
No 27
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=34.51 E-value=27 Score=23.95 Aligned_cols=27 Identities=26% Similarity=0.815 Sum_probs=22.1
Q ss_pred CCCCCCCCCCC------CCceeccccCeeeecC
Q 032009 51 PDTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
..-.|..|+.. .++|-|-.||+..-|.
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCCEEECC
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCCEEeCC
Confidence 34569999864 6899999999998886
No 28
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=34.21 E-value=27 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=21.6
Q ss_pred CCCCCCCCCC------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
.-.|..|+.. .++|-|-.||+..-|.
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp CBCCTTTCSSCBEEEETTEEECSSSCCEEECC
T ss_pred cccCcccCCCeeEecCcceEEcCCCCCEEeCC
Confidence 3469999874 6899999999998886
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=33.14 E-value=16 Score=24.55 Aligned_cols=51 Identities=16% Similarity=0.321 Sum_probs=31.4
Q ss_pred ccccCCCCCcccccccccCC---CCCCCCCCCCCCCCCC-------CCceeccccCeeeec
Q 032009 26 GWVEPLTSCDHLVASLSSDL---AHIPTPDTPCNRCQHP-------SENWLCLCCKEVLCS 76 (149)
Q Consensus 26 ~w~~~~~~CpHl~~~l~~~~---~~i~~~~~~C~~C~~~-------~~lW~CL~Cg~vgCg 76 (149)
.|......||--.+.+.... ..++.....|..|... ....+.+.||+++|.
T Consensus 43 ~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~ 103 (133)
T 4ap4_A 43 DSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCS 103 (133)
T ss_dssp HHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEH
T ss_pred HHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhH
Confidence 45555567777644443221 1223456679999864 234588899999995
No 30
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=32.55 E-value=19 Score=28.09 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=20.6
Q ss_pred EcCCCceecccccCCchhhhHHHHHHhhCCCCC
Q 032009 105 CFTCDAYLNAQVIPQLRPVYETAYILKFGEAPP 137 (149)
Q Consensus 105 CY~Cd~~V~~~~~~~L~~~~~~~hl~kfg~~~~ 137 (149)
|-.|+.||+- ++| +.||++.|+++.
T Consensus 157 Ce~CgKYvDI---d~~-----~~Hlk~Hg~~v~ 181 (226)
T 2czr_A 157 CEECGKYVDI---ENL-----EAHLREHGIKLH 181 (226)
T ss_dssp CTTTCCEEEG---GGH-----HHHHHTTTCCGG
T ss_pred hhhcCceecH---HHH-----HHHHHHcCcchh
Confidence 8889999964 456 889999999874
No 31
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=32.40 E-value=22 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.660 Sum_probs=21.9
Q ss_pred CCCCCCCCCCC------CCceeccccCeeeecC
Q 032009 51 PDTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
..-.|..|+.. ..+|.|-.|++..-|.
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 45679999973 5789999999997775
No 32
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.39 E-value=53 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.693 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCceeccccCeeeec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCS 76 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCg 76 (149)
....|..|+. ...+.|..|+.-.|+
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeC
Confidence 3346999999 999999999999996
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.37 E-value=32 Score=20.78 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLN 113 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~ 113 (149)
....|..|...-..-+-|.||+++|. .-.....+.. ....-|-.|...+.
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~----~Ci~~~~~~~---------~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCL----KCITQIGETS---------CGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEH----HHHHHHCSSS---------CSCCCCSSSCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhH----HHHHHHHHcC---------CCCCCCCCCCCcCC
Confidence 34568888876555566799999995 3444444311 23445667775553
No 34
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=30.82 E-value=27 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=21.7
Q ss_pred CCCCCCCCCC------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
.-.|..|+.. .++|-|-.||+..-|.
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEEeCC
Confidence 3459999873 7899999999999886
No 35
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.44 E-value=25 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.842 Sum_probs=19.9
Q ss_pred CCCCCCCCCC------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~------~~lW~CL~Cg~vgCgr 77 (149)
.-.|..|+.. .++|-|-.||+..-|.
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEeCC
Confidence 3458888763 6799999999887775
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.38 E-value=34 Score=20.13 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCceeccccCeeeec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCS 76 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCg 76 (149)
....|..|...-..-+-|.||+++|.
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~fC~ 44 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHNFCL 44 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSEECH
T ss_pred cCCCCCcCCchhCCeEEeCCCCcchH
Confidence 34568888865444455689999995
No 37
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.13 E-value=39 Score=19.63 Aligned_cols=21 Identities=24% Similarity=0.667 Sum_probs=12.8
Q ss_pred CCCCCCC-------CCCceeccccCeee
Q 032009 54 PCNRCQH-------PSENWLCLCCKEVL 74 (149)
Q Consensus 54 ~C~~C~~-------~~~lW~CL~Cg~vg 74 (149)
.|..|+. ..+-++|..||.+.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4666654 13456777777664
No 38
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.76 E-value=21 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCC-CCceeccccCee
Q 032009 50 TPDTPCNRCQHP-SENWLCLCCKEV 73 (149)
Q Consensus 50 ~~~~~C~~C~~~-~~lW~CL~Cg~v 73 (149)
+....|..|+.. ..--+|..||+.
T Consensus 28 p~l~~c~~cGe~~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 28 PTLVPCPECKAMKPPHTVCPECGYY 52 (60)
T ss_dssp CCCEECTTTCCEECTTSCCTTTCEE
T ss_pred CceeECCCCCCeecceEEcCCCCcC
Confidence 356779999974 456689999975
No 39
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.76 E-value=11 Score=17.52 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=12.1
Q ss_pred eeccccCeeeecCC-CChhHHHHh
Q 032009 65 WLCLCCKEVLCSRF-VNKHMLQHY 87 (149)
Q Consensus 65 W~CL~Cg~vgCgr~-~~~Ha~~H~ 87 (149)
+.|-.||..+.... -..|++.|.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHhc
Confidence 45667776655432 234555553
No 40
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=28.48 E-value=22 Score=19.74 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=6.0
Q ss_pred ceeccccCeee
Q 032009 64 NWLCLCCKEVL 74 (149)
Q Consensus 64 lW~CL~Cg~vg 74 (149)
.+.|..||..+
T Consensus 32 ~~~C~~C~~~f 42 (57)
T 3uk3_C 32 PYKCEFCEYAA 42 (57)
T ss_dssp CEECSSSSCEE
T ss_pred CcCCCCCcchh
Confidence 45566665553
No 41
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=28.26 E-value=13 Score=20.81 Aligned_cols=13 Identities=15% Similarity=0.462 Sum_probs=8.2
Q ss_pred CceeccccCeeee
Q 032009 63 ENWLCLCCKEVLC 75 (149)
Q Consensus 63 ~lW~CL~Cg~vgC 75 (149)
..+.|-.||..+-
T Consensus 28 ~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 28 RPYHCTYCNFSFK 40 (57)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCchhc
Confidence 3467777776654
No 42
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.74 E-value=25 Score=20.88 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=14.4
Q ss_pred CceeccccCeeeecC-CCChhHHHHhh
Q 032009 63 ENWLCLCCKEVLCSR-FVNKHMLQHYL 88 (149)
Q Consensus 63 ~lW~CL~Cg~vgCgr-~~~~Ha~~H~~ 88 (149)
..+.|..|+..+-.+ .-..|++.|..
T Consensus 41 ~~~~C~~C~~~f~~~~~L~~H~~~H~~ 67 (72)
T 1x6e_A 41 KPYKCLECGKAFSQNSGLINHQRIHTS 67 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred CCeECCCCCcccCCHHHHHHHHHhcCC
Confidence 456777777765433 13456665543
No 43
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.25 E-value=46 Score=21.54 Aligned_cols=25 Identities=28% Similarity=0.749 Sum_probs=18.7
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|... ..-.-|-.||.|.|+.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTT
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChh
Confidence 458888765 3445799999999985
No 44
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.11 E-value=28 Score=20.39 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=14.8
Q ss_pred CceeccccCeeeecC-CCChhHHHHhhh
Q 032009 63 ENWLCLCCKEVLCSR-FVNKHMLQHYLE 89 (149)
Q Consensus 63 ~lW~CL~Cg~vgCgr-~~~~Ha~~H~~~ 89 (149)
..+.|-.|+..+-.+ .-..|++.|..+
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~ 63 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 63 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence 346777777765433 133566655543
No 45
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=26.65 E-value=14 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=0.0
Q ss_pred eeccccCeeeecCCCChhHHHHhhhcCCee
Q 032009 65 WLCLCCKEVLCSRFVNKHMLQHYLETNHSV 94 (149)
Q Consensus 65 W~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l 94 (149)
-.|+.||..+-| ..=|..|.++|||.=
T Consensus 181 l~C~~C~~~~~g---~~~a~~ha~~tgH~~ 207 (212)
T 3by4_A 181 IKCNTCQMTFVG---EREVARHAESTGHVD 207 (212)
T ss_dssp ------------------------------
T ss_pred EEcccCCCcccC---HHHHHHHHHHhCCCC
Confidence 357777777664 456789999999953
No 46
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.16 E-value=31 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=15.5
Q ss_pred CCCCCCCC--CCCceeccccCee
Q 032009 53 TPCNRCQH--PSENWLCLCCKEV 73 (149)
Q Consensus 53 ~~C~~C~~--~~~lW~CL~Cg~v 73 (149)
..|..|+. ..+.|-|-.||+.
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSC
T ss_pred ccCCCCCCcCCCCceecCCCCCc
Confidence 34778875 4678888888875
No 47
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.83 E-value=16 Score=16.96 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=13.1
Q ss_pred eeccccCeeeecC-CCChhHHHHh
Q 032009 65 WLCLCCKEVLCSR-FVNKHMLQHY 87 (149)
Q Consensus 65 W~CL~Cg~vgCgr-~~~~Ha~~H~ 87 (149)
+.|-.||..+-.. .-..|++.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHHHhc
Confidence 5677787775533 1235665554
No 48
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.81 E-value=37 Score=24.01 Aligned_cols=26 Identities=27% Similarity=0.721 Sum_probs=19.8
Q ss_pred CCCCCCCCCCC----CceeccccCeeeecC
Q 032009 52 DTPCNRCQHPS----ENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~~----~lW~CL~Cg~vgCgr 77 (149)
...|..|+..= .-.-|-.||.+.|+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~ 48 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMT 48 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGG
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHH
Confidence 34699998753 345799999999986
No 49
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.76 E-value=25 Score=21.34 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=9.9
Q ss_pred ceeccccCeeeec
Q 032009 64 NWLCLCCKEVLCS 76 (149)
Q Consensus 64 lW~CL~Cg~vgCg 76 (149)
.|+|..||++.=.
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5889999988543
No 50
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.72 E-value=27 Score=22.57 Aligned_cols=39 Identities=23% Similarity=0.572 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCceecccc-CeeeecC-CCChhHHHHhhhcCCee
Q 032009 53 TPCNRCQHPSENWLCLCC-KEVLCSR-FVNKHMLQHYLETNHSV 94 (149)
Q Consensus 53 ~~C~~C~~~~~lW~CL~C-g~vgCgr-~~~~Ha~~H~~~t~H~l 94 (149)
.=|..|... ....|+.| |-..|.| +...|. =+....|..
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~--~~d~r~Hk~ 49 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHD--NFDLKEHQT 49 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT--TSSTTTCCE
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHcc--chhhhccce
Confidence 348888866 55789999 9999988 555563 245555543
No 51
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.61 E-value=25 Score=26.11 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=11.1
Q ss_pred CCceeccccCeeee
Q 032009 62 SENWLCLCCKEVLC 75 (149)
Q Consensus 62 ~~lW~CL~Cg~vgC 75 (149)
...|+|..||++.=
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 56899999998854
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=25.49 E-value=84 Score=18.49 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCc-eeccccCeeeec
Q 032009 51 PDTPCNRCQHPSEN-WLCLCCKEVLCS 76 (149)
Q Consensus 51 ~~~~C~~C~~~~~l-W~CL~Cg~vgCg 76 (149)
....|..|...-.. -+-+.||+++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~ 30 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCY 30 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEEST
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHH
Confidence 34579999876433 477899999995
No 53
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.46 E-value=38 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.514 Sum_probs=29.0
Q ss_pred CCCCCCCCC---CCCceeccccCeeeecCCCChhHHH-Hhhhc---CCee
Q 032009 52 DTPCNRCQH---PSENWLCLCCKEVLCSRFVNKHMLQ-HYLET---NHSV 94 (149)
Q Consensus 52 ~~~C~~C~~---~~~lW~CL~Cg~vgCgr~~~~Ha~~-H~~~t---~H~l 94 (149)
...|..|.. ....-.||+|....| ..|... |.+.. .|.|
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCCCCCCCCCcc
Confidence 456999975 345678999999999 479996 86644 5655
No 54
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.37 E-value=36 Score=21.50 Aligned_cols=25 Identities=24% Similarity=0.681 Sum_probs=18.8
Q ss_pred CCCCCCCCCC----CceeccccCeeeecC
Q 032009 53 TPCNRCQHPS----ENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~~----~lW~CL~Cg~vgCgr 77 (149)
..|..|+..= .-.-|-.||.+.|+.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEccc
Confidence 3588887653 345799999999985
No 55
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.93 E-value=25 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=10.7
Q ss_pred CceeccccCeeeec
Q 032009 63 ENWLCLCCKEVLCS 76 (149)
Q Consensus 63 ~lW~CL~Cg~vgCg 76 (149)
..|.|..||++.=+
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 36899999988544
No 56
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=49 Score=20.00 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCceeccccCeeeec
Q 032009 52 DTPCNRCQHPSENWLCLCCKEVLCS 76 (149)
Q Consensus 52 ~~~C~~C~~~~~lW~CL~Cg~vgCg 76 (149)
...|..|...-..-+-+.||+++|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~fC~ 39 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVFCY 39 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEEEEH
T ss_pred CCCCccCCcccCCCEEccCCCHHHH
Confidence 3458888765444466789999994
No 57
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.74 E-value=40 Score=22.25 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=19.1
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|... ..-.-|-.||.+.|+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCc
Confidence 358888864 3445799999999986
No 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.64 E-value=37 Score=19.35 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCceeccccCeeeec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCS 76 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCg 76 (149)
....|..|...-..-+-|.||+++|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~ 39 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCK 39 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCH
T ss_pred cCCCCccCCcccCccEeCCCCCccCH
Confidence 34568888765433344789999985
No 59
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=24.44 E-value=63 Score=19.72 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLN 113 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~ 113 (149)
....|..|...-..-+-+.||+++|. ....+++.. + ...|-.|...+.
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~----~Ci~~~~~~-~----------~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYER----SSIQKWLDA-G----------HKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEH----HHHHHHHTT-T----------CCBCTTTCCBCS
T ss_pred ccCCCCCccccccCCEEcCCCCeecH----HHHHHHHHH-C----------cCCCCCCcCCCC
Confidence 45679999876544456789999994 455555542 1 234777776654
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.39 E-value=44 Score=19.49 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCceeccccCeeeecC
Q 032009 52 DTPCNRCQHPSENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~~~lW~CL~Cg~vgCgr 77 (149)
...|..|...-..-+-|.||+.+|..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~fC~~ 31 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTLCSG 31 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTT
T ss_pred CCCceEeCCccCCeEEcCCCCcccHH
Confidence 34588887654444667899988864
No 61
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=24.33 E-value=52 Score=25.59 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEE
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVW 104 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vw 104 (149)
....|.+|+.....|..+..|.+-|.+ .+-.|-.-..|.-.|..-+.+.|
T Consensus 41 ~n~~c~dc~~~~p~w~s~~~g~~~c~~----cs~~hr~lg~~is~v~sl~lD~w 90 (301)
T 2b0o_E 41 GNSQCCDCGAADPTWLSTNLGVLTCIQ----CSGVHRELGVRFSRMQSLTLDLL 90 (301)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHH----HHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCCCCCCCCCeEEeecCeEEcHH----HHHHHHhhCCCcccccccCcCCC
Confidence 567899999998999999999999964 34445333335544444444333
No 62
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=23.65 E-value=54 Score=20.70 Aligned_cols=35 Identities=17% Similarity=0.533 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCceeccccCee-eecCCCChhHHHHhhh
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEV-LCSRFVNKHMLQHYLE 89 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~v-gCgr~~~~Ha~~H~~~ 89 (149)
....|..|+. .++..|-.|..+ .|+ ..+...|+..
T Consensus 14 ~~~~C~~C~~-~~~~~Cs~Ck~v~YCs---~eCQ~~~W~~ 49 (70)
T 2d8q_A 14 ERPRCAYCSA-EASKRCSRCQNEWYCC---RECQVKHWEK 49 (70)
T ss_dssp CCCBCSSSCC-BCCCBCTTTSCCBCSC---HHHHHHTHHH
T ss_pred CCCcCCCCCC-cccccCCCCCCEeeCC---HHHhHHHHHH
Confidence 4567999987 467888888877 564 4677777765
No 63
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.22 E-value=17 Score=17.08 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=12.2
Q ss_pred eeccccCeeeecC-CCChhHHHHh
Q 032009 65 WLCLCCKEVLCSR-FVNKHMLQHY 87 (149)
Q Consensus 65 W~CL~Cg~vgCgr-~~~~Ha~~H~ 87 (149)
+.|-.||..+-.. .-..|++.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHVRQHT 26 (29)
Confidence 3566676665433 2345665553
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=56 Score=19.91 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceecc
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNA 114 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~~ 114 (149)
....|..|...-..-+-|.||+++|. .-...++.... ......-|-.|...+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~----~Ci~~~~~~~~------~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQ----ACLTANHKKSM------LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCT----THHHHHHHHHH------HTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHH----HHHHHHHHHhh------cCCCCCcCCCCCCccCH
Confidence 34568888875443444789999995 34555544310 01124567788866653
No 65
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.19 E-value=17 Score=17.04 Aligned_cols=23 Identities=17% Similarity=0.587 Sum_probs=12.3
Q ss_pred eeccccCeeeecCC-CChhHHHHh
Q 032009 65 WLCLCCKEVLCSRF-VNKHMLQHY 87 (149)
Q Consensus 65 W~CL~Cg~vgCgr~-~~~Ha~~H~ 87 (149)
+.|-.||..+-... -..|++.|.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~~h~ 27 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQRHVRIHT 27 (30)
Confidence 45666776655432 345555553
No 66
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.40 E-value=64 Score=19.21 Aligned_cols=25 Identities=24% Similarity=0.640 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCceeccccCeeeec
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCS 76 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCg 76 (149)
....|..|...... +-+.||+.+|.
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~ 38 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQ 38 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECH
T ss_pred CCCCCeeCCcCccC-cccCCCCcccH
Confidence 45679999876544 77899999984
No 67
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=23.03 E-value=80 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCCCCCCCCCC----CceeccccCeeeec
Q 032009 52 DTPCNRCQHPS----ENWLCLCCKEVLCS 76 (149)
Q Consensus 52 ~~~C~~C~~~~----~lW~CL~Cg~vgCg 76 (149)
...|..|...- +..+-+.||+++|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~ 33 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHR 33 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEET
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccH
Confidence 45688887642 34778889999985
No 68
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=22.94 E-value=65 Score=19.13 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCCCCCCCCCC---CCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceecc
Q 032009 51 PDTPCNRCQHP---SENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLNA 114 (149)
Q Consensus 51 ~~~~C~~C~~~---~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~~ 114 (149)
....|..|... ....+.|.||+++|. .-....++... -|-.|...|..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~----~Ci~~~~~~~~------------~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQ----VCVDQWLITNK------------KCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEH----HHHHHHHHHCS------------BCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHH----HHHHHHHHcCC------------CCcCcCccccC
Confidence 44568888643 345677889999994 34444443321 17777766543
No 69
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=22.52 E-value=43 Score=21.64 Aligned_cols=25 Identities=24% Similarity=0.825 Sum_probs=19.2
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|+.. ..-.-|-.||.+.|+.
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCcccCccccccCCCCCCEEChH
Confidence 458888875 3445799999999975
No 70
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.39 E-value=29 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCC-CCceeccccCee
Q 032009 50 TPDTPCNRCQHP-SENWLCLCCKEV 73 (149)
Q Consensus 50 ~~~~~C~~C~~~-~~lW~CL~Cg~v 73 (149)
+....|..|+.. ..--+|..||+.
T Consensus 28 p~l~~c~~cG~~~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 28 PNLTECPQCHGKKLSHHICPNCGYY 52 (60)
T ss_dssp CCCEECTTTCCEECTTBCCTTTCBS
T ss_pred CCceECCCCCCEeCCceEcCCCCcC
Confidence 356679999975 456799999975
No 71
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.32 E-value=52 Score=21.17 Aligned_cols=26 Identities=23% Similarity=0.630 Sum_probs=19.8
Q ss_pred CCCCCCCCCC-------CCceeccccCeeeecC
Q 032009 52 DTPCNRCQHP-------SENWLCLCCKEVLCSR 77 (149)
Q Consensus 52 ~~~C~~C~~~-------~~lW~CL~Cg~vgCgr 77 (149)
..+|..|+.. ...-.|+.||.+.|-.
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 3469999873 3455899999999975
No 72
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=22.22 E-value=54 Score=21.61 Aligned_cols=25 Identities=20% Similarity=0.696 Sum_probs=19.3
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|... ..-.-|-.||.+.|+.
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETT
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChh
Confidence 458888875 3445799999999986
No 73
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.07 E-value=47 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.675 Sum_probs=19.5
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|+.. ..-.-|-.||.+.|+.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~ 98 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAE 98 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CCCcCcCCccccccccccCCCCCeEEChH
Confidence 458888875 3445899999999986
No 74
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.95 E-value=53 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=15.4
Q ss_pred CCCCCCCCC------CCceeccccCeee
Q 032009 53 TPCNRCQHP------SENWLCLCCKEVL 74 (149)
Q Consensus 53 ~~C~~C~~~------~~lW~CL~Cg~vg 74 (149)
..|..|+.. .+-|.|-.||++.
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 347788762 4677888888764
No 75
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.87 E-value=31 Score=22.16 Aligned_cols=14 Identities=14% Similarity=0.441 Sum_probs=11.2
Q ss_pred CCceeccccCeeee
Q 032009 62 SENWLCLCCKEVLC 75 (149)
Q Consensus 62 ~~lW~CL~Cg~vgC 75 (149)
...|.|..||+|.=
T Consensus 5 m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 5 EGKYECEACGYIYE 18 (70)
T ss_dssp SSCEEETTTCCEEC
T ss_pred CceEEeCCCCEEEc
Confidence 35799999999954
No 76
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.81 E-value=29 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=9.1
Q ss_pred ceeccccCeeee
Q 032009 64 NWLCLCCKEVLC 75 (149)
Q Consensus 64 lW~CL~Cg~vgC 75 (149)
.|.|..||++.=
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 588888888843
No 77
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.75 E-value=22 Score=16.53 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=7.9
Q ss_pred eeccccCeeeec
Q 032009 65 WLCLCCKEVLCS 76 (149)
Q Consensus 65 W~CL~Cg~vgCg 76 (149)
+.|-.||..+-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 467777777654
No 78
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.37 E-value=22 Score=17.78 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=14.8
Q ss_pred CCceeccccCeeeecC-CCChhHHHH
Q 032009 62 SENWLCLCCKEVLCSR-FVNKHMLQH 86 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCgr-~~~~Ha~~H 86 (149)
...+.|-.||..+-.. .-..|++.|
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHHHHHHh
Confidence 4567888888876533 123455544
No 79
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.27 E-value=29 Score=26.41 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.2
Q ss_pred CCceeccccCeeeec
Q 032009 62 SENWLCLCCKEVLCS 76 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCg 76 (149)
...|+|..||++.=|
T Consensus 169 ~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG 183 (202)
T ss_dssp CCEEECSSSCCEEES
T ss_pred CcEEEECCCCCEEcC
Confidence 569999999999543
No 80
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=21.18 E-value=1.2e+02 Score=19.69 Aligned_cols=27 Identities=19% Similarity=0.619 Sum_probs=20.3
Q ss_pred CCCCCCC--CCCCCCc-eeccccCeeeecC
Q 032009 51 PDTPCNR--CQHPSEN-WLCLCCKEVLCSR 77 (149)
Q Consensus 51 ~~~~C~~--C~~~~~l-W~CL~Cg~vgCgr 77 (149)
...+|.. |+...-+ ..|-.|+.++|..
T Consensus 13 ~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 13 IGQHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred cCCCcCcccCCCccceeeECcccCcCcCcc
Confidence 4567887 8876443 4699999999974
No 81
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=21.17 E-value=61 Score=19.80 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCceeccc-cCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCce
Q 032009 52 DTPCNRCQHPSENWLCLC-CKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAY 111 (149)
Q Consensus 52 ~~~C~~C~~~~~lW~CL~-Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~ 111 (149)
...|..|...-..-+-|. ||+++|. .-....++..+ ...|-.|...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~----~Ci~~~~~~~~----------~~~CP~Cr~~ 61 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCD----ECIRTALLESD----------EHTCPTCHQN 61 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECT----THHHHHHHHSS----------SSCCSSSCCS
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHH----HHHHHHHHhcC----------CCcCCCCCCc
Confidence 346888876544444577 9999994 45666665431 2357777753
No 82
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.88 E-value=54 Score=21.23 Aligned_cols=25 Identities=32% Similarity=0.711 Sum_probs=18.9
Q ss_pred CCCCCCCCC----CCceeccccCeeeecC
Q 032009 53 TPCNRCQHP----SENWLCLCCKEVLCSR 77 (149)
Q Consensus 53 ~~C~~C~~~----~~lW~CL~Cg~vgCgr 77 (149)
..|..|... ..-.-|-.||.+.|+.
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTG
T ss_pred CCCcCcCCccccchhcccccCCCcEEChH
Confidence 458888764 3456799999999975
No 83
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.01 E-value=21 Score=16.32 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=6.1
Q ss_pred eeccccCeeee
Q 032009 65 WLCLCCKEVLC 75 (149)
Q Consensus 65 W~CL~Cg~vgC 75 (149)
+.|-.||..+-
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 45666666544
No 84
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=20.51 E-value=62 Score=23.22 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEE
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVW 104 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vw 104 (149)
....|.+|+.....|..+.=|.+-|.+ .+-.|-.---|.-.|..-+++.|
T Consensus 26 ~N~~CaDCg~~~P~WaS~n~GvfiC~~----CsgiHR~lG~hiS~VkSl~ld~w 75 (134)
T 2iqj_A 26 DNKFCADCQSKGPRWASWNIGVFICIR----CAGIHRNLGVHISRVKSVNLDQW 75 (134)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHH----HHHHHHHHCTTTCCEEETTTSCC
T ss_pred CCCcCCcCcCCCCCeEEecCCEEEhHh----hhHHHhcCCCCCCceeeccccCC
Confidence 456799999999999999988888853 44455433336545555555555
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=20.48 E-value=1.2e+02 Score=18.90 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCc
Q 032009 51 PDTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDA 110 (149)
Q Consensus 51 ~~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~ 110 (149)
...+|..|+...++-+|-.|... =|+.=+.-. ..++-...-+|-.|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~-------~H~~Cl~P~-----l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAA-------FHWRCHFPA-----GTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCE-------ECHHHHCTT-----TCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECCCCCCc-------eecccCCCc-----cCcCCCCCEECccccC
Confidence 45679999988888777766533 244444211 1123455677888864
No 86
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=68 Score=19.80 Aligned_cols=46 Identities=22% Similarity=0.567 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCceeccccCeeeecCCCChhHHHHhhhcCCeeEEECCCCcEEEcCCCceec
Q 032009 52 DTPCNRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYLETNHSVALSYSDLSVWCFTCDAYLN 113 (149)
Q Consensus 52 ~~~C~~C~~~~~lW~CL~Cg~vgCgr~~~~Ha~~H~~~t~H~l~v~l~t~~vwCY~Cd~~V~ 113 (149)
...|..|...-..-+=+.||+++|. .-....++. ..-|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~----~Ci~~~~~~------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCE----SCALEHFRA------------TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEH----HHHHHHHHH------------CSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHH----HHHHHHHHC------------CCcCCCcCcccc
Confidence 4568888765433444889999994 455555543 225888887765
No 87
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.24 E-value=35 Score=22.75 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=12.2
Q ss_pred CCceeccccCeeeec
Q 032009 62 SENWLCLCCKEVLCS 76 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCg 76 (149)
...|+|..||+|.=+
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 458999999999654
No 88
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.03 E-value=40 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.840 Sum_probs=12.2
Q ss_pred CCceeccccCeeeec
Q 032009 62 SENWLCLCCKEVLCS 76 (149)
Q Consensus 62 ~~lW~CL~Cg~vgCg 76 (149)
...|.|..||++.=+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 568999999999654
No 89
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.02 E-value=37 Score=20.82 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=8.8
Q ss_pred ceeccccCeeee
Q 032009 64 NWLCLCCKEVLC 75 (149)
Q Consensus 64 lW~CL~Cg~vgC 75 (149)
.|.|..||+|.=
T Consensus 3 ~y~C~vCGyvYd 14 (54)
T 4rxn_A 3 KYTCTVCGYIYD 14 (54)
T ss_dssp CEEETTTCCEEC
T ss_pred ceECCCCCeEEC
Confidence 578888888743
Done!