BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032010
         (149 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422.
 pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422.
 pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422.
 pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422.
 pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422.
 pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
           Northeast Structural Genomics Consortium Target Nsr422
          Length = 172

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 96  ELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149
           +L R+ + I+ +P I A + AEIL   G      E    A   N  +WLD+ +K
Sbjct: 42  KLGRQFDLIVTSPLIRARQTAEILLASGLSCQLEESNHLAPNGNIFNWLDYWLK 95


>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
          Length = 540

 Score = 26.2 bits (56), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 96  ELKREQEEIINAPDIEAAECAEILAQYGA 124
           E + E +E+I   D+ A E  EI A+Y A
Sbjct: 112 ETEEENKEVIATKDVVAGEWTEISAKYKA 140


>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
           Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
           With Xylohexaose
 pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
 pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
           Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
           Xylanas Xylohexaose
          Length = 540

 Score = 26.2 bits (56), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 96  ELKREQEEIINAPDIEAAECAEILAQYGA 124
           E + E +E+I   D+ A E  EI A+Y A
Sbjct: 112 ETEEENKEVIATKDVVAGEWTEISAKYKA 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,357,285
Number of Sequences: 62578
Number of extensions: 103600
Number of successful extensions: 175
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)