Query 032010
Match_columns 149
No_of_seqs 106 out of 908
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02433 Nodulin-21_like_2 Nodu 100.0 1.5E-42 3.4E-47 284.0 12.9 124 26-149 14-137 (234)
2 cd02434 Nodulin-21_like_3 Nodu 100.0 1.5E-41 3.3E-46 276.3 13.4 120 30-149 1-120 (225)
3 cd02435 CCC1 CCC1. CCC1: This 100.0 3.9E-41 8.5E-46 276.7 13.8 133 16-149 6-140 (241)
4 cd02432 Nodulin-21_like_1 Nodu 100.0 8E-40 1.7E-44 265.4 13.3 120 28-149 4-123 (218)
5 PF01988 VIT1: VIT family; In 100.0 1.6E-39 3.4E-44 261.2 13.4 118 31-149 1-118 (213)
6 KOG4473 Uncharacterized membra 100.0 1.3E-33 2.8E-38 228.8 6.4 127 21-149 24-150 (247)
7 cd02436 Nodulin-21 Nodulin-21. 99.9 2.1E-27 4.5E-32 183.5 8.0 77 30-106 1-77 (152)
8 cd02431 Ferritin_CCC1_C CCC1-r 99.8 9.6E-22 2.1E-26 151.8 5.7 64 32-95 1-64 (149)
9 cd02437 CCC1_like_1 CCC1-relat 99.8 1.1E-20 2.5E-25 148.2 9.5 77 31-115 2-79 (175)
10 TIGR00267 conserved hypothetic 99.8 1E-20 2.3E-25 148.2 6.0 79 33-129 1-79 (169)
11 cd01059 CCC1_like CCC1-related 99.7 1.2E-18 2.5E-23 132.8 4.8 60 32-91 1-60 (143)
12 COG1814 Uncharacterized membra 99.4 7E-13 1.5E-17 108.2 10.5 114 26-139 6-120 (229)
13 COG1814 Uncharacterized membra 86.0 0.59 1.3E-05 38.2 2.4 56 30-85 82-138 (229)
14 PF04156 IncA: IncA protein; 81.6 21 0.00046 27.5 9.5 26 58-83 33-58 (191)
15 PF13767 DUF4168: Domain of un 76.9 13 0.00028 25.2 6.1 61 83-143 13-75 (78)
16 PF07499 RuvA_C: RuvA, C-termi 75.6 7 0.00015 24.1 4.1 30 112-141 3-32 (47)
17 PF06545 DUF1116: Protein of u 74.4 5 0.00011 33.1 4.1 37 112-148 111-147 (216)
18 PRK11677 hypothetical protein; 73.4 29 0.00062 26.5 7.8 12 109-120 46-57 (134)
19 PF05055 DUF677: Protein of un 72.4 21 0.00044 31.2 7.6 36 112-147 276-311 (336)
20 COG3093 VapI Plasmid maintenan 66.7 8.4 0.00018 28.4 3.4 34 113-146 38-72 (104)
21 PF00627 UBA: UBA/TS-N domain; 64.0 12 0.00025 21.8 3.1 34 113-146 3-36 (37)
22 PRK01844 hypothetical protein; 60.5 52 0.0011 22.7 6.2 63 60-136 3-67 (72)
23 PF06305 DUF1049: Protein of u 59.8 43 0.00094 21.5 5.6 29 77-105 37-65 (68)
24 smart00165 UBA Ubiquitin assoc 59.5 23 0.0005 20.1 3.9 33 114-146 3-35 (37)
25 PF09388 SpoOE-like: Spo0E lik 58.2 21 0.00045 21.8 3.7 31 106-136 4-34 (45)
26 PRK00523 hypothetical protein; 54.8 69 0.0015 22.2 6.1 62 61-136 5-68 (72)
27 PF14476 Chloroplast_duf: Peta 53.9 1.4E+02 0.0031 25.9 9.1 44 20-63 11-57 (313)
28 cd00194 UBA Ubiquitin Associat 53.5 38 0.00081 19.3 4.1 35 114-148 3-37 (38)
29 PF11220 DUF3015: Protein of u 51.5 20 0.00043 27.7 3.4 105 31-141 12-138 (144)
30 cd00052 EH Eps15 homology doma 50.8 24 0.00051 21.8 3.2 31 111-141 17-47 (67)
31 PRK00117 recX recombination re 49.6 46 0.001 24.9 5.1 29 109-137 126-154 (157)
32 PF06791 TMP_2: Prophage tail 47.5 1.5E+02 0.0032 23.8 10.1 90 42-140 58-147 (210)
33 PF11588 DUF3243: Protein of u 46.2 37 0.00079 24.0 3.7 43 76-120 34-76 (81)
34 PF02631 RecX: RecX family; I 46.1 66 0.0014 23.0 5.3 29 107-135 90-118 (121)
35 PRK00145 putative inner membra 46.0 1.6E+02 0.0035 23.9 9.5 32 96-127 66-97 (223)
36 PF01411 tRNA-synt_2c: tRNA sy 46.0 95 0.0021 28.7 7.4 102 27-135 274-407 (552)
37 COG4105 ComL DNA uptake lipopr 45.9 85 0.0019 26.5 6.5 62 75-140 168-234 (254)
38 TIGR00084 ruvA Holliday juncti 45.7 54 0.0012 26.1 5.2 100 35-140 58-175 (191)
39 PRK00252 alaS alanyl-tRNA synt 45.5 1.5E+02 0.0032 29.1 8.9 104 26-135 268-402 (865)
40 COG3678 CpxP P pilus assembly/ 45.4 65 0.0014 25.2 5.5 58 86-143 59-116 (160)
41 PRK14134 recX recombination re 45.1 1.4E+02 0.0031 25.1 7.9 30 110-139 253-282 (283)
42 PRK11375 allantoin permease; P 45.0 63 0.0014 29.1 6.0 65 30-94 28-93 (484)
43 TIGR02865 spore_II_E stage II 44.9 32 0.00069 33.0 4.3 40 36-76 192-233 (764)
44 PRK14137 recX recombination re 42.6 1.4E+02 0.0029 24.0 7.0 32 109-140 152-183 (195)
45 COG4564 Signal transduction hi 42.4 2.6E+02 0.0056 25.3 9.2 67 71-137 16-86 (459)
46 PF06295 DUF1043: Protein of u 42.3 1.4E+02 0.0031 22.1 7.4 18 103-120 36-53 (128)
47 PF10112 Halogen_Hydrol: 5-bro 40.6 99 0.0021 24.2 5.9 77 48-146 11-87 (199)
48 PRK10098 putative dehydrogenas 40.5 47 0.001 29.0 4.4 32 107-138 8-39 (350)
49 PF07130 YebG: YebG protein; 40.1 97 0.0021 21.6 5.0 35 113-147 36-72 (75)
50 PF06072 Herpes_US9: Alphaherp 40.0 47 0.001 22.2 3.3 15 71-85 43-57 (60)
51 PF04172 LrgB: LrgB-like famil 39.9 17 0.00038 29.7 1.5 47 36-82 128-174 (215)
52 PRK01584 alanyl-tRNA synthetas 39.6 2.6E+02 0.0057 26.4 9.3 104 26-135 277-413 (594)
53 TIGR00601 rad23 UV excision re 39.4 54 0.0012 29.1 4.6 42 108-149 152-193 (378)
54 PF03035 RNA_capsid: Calicivir 39.0 1.9E+02 0.004 24.2 7.4 18 116-133 72-89 (226)
55 TIGR00344 alaS alanine--tRNA l 38.2 2.3E+02 0.005 27.8 9.0 104 26-135 275-408 (851)
56 PF01618 MotA_ExbB: MotA/TolQ/ 37.6 73 0.0016 23.5 4.5 58 37-94 71-133 (139)
57 PF10397 ADSL_C: Adenylosuccin 37.5 47 0.001 22.4 3.2 26 113-138 7-32 (81)
58 TIGR03683 A-tRNA_syn_arch alan 37.3 1.6E+02 0.0034 29.2 7.8 104 26-135 329-459 (902)
59 PF14265 DUF4355: Domain of un 36.7 1.5E+02 0.0032 21.4 6.0 26 107-132 66-91 (125)
60 PRK00117 recX recombination re 35.9 1.8E+02 0.0038 21.7 6.5 31 108-138 24-54 (157)
61 PRK14137 recX recombination re 34.7 1.9E+02 0.0042 23.1 6.8 50 90-140 36-85 (195)
62 PF02671 PAH: Paired amphipath 34.5 58 0.0012 19.6 2.9 34 113-146 8-42 (47)
63 PF05461 ApoL: Apolipoprotein 34.5 2.6E+02 0.0056 24.1 7.9 56 34-89 98-159 (313)
64 cd00238 ERp29c ERp29 and ERp38 34.4 1.3E+02 0.0029 21.2 5.2 45 91-135 42-86 (93)
65 PF10507 DUF2453: Protein of u 34.4 46 0.00099 24.8 2.9 32 59-90 34-65 (111)
66 PRK14722 flhF flagellar biosyn 34.1 84 0.0018 27.8 5.0 32 106-139 72-103 (374)
67 PRK15358 pathogenicity island 33.8 1.4E+02 0.0031 24.7 5.8 90 32-137 45-136 (239)
68 TIGR03592 yidC_oxa1_cterm memb 33.6 64 0.0014 25.1 3.8 26 101-126 42-67 (181)
69 KOG3251 Golgi SNAP receptor co 33.5 1.9E+02 0.0041 23.9 6.6 60 70-144 136-195 (213)
70 PF11239 DUF3040: Protein of u 33.1 56 0.0012 22.3 3.0 17 60-76 64-80 (82)
71 PF09713 A_thal_3526: Plant pr 32.5 1.4E+02 0.0029 19.5 4.5 37 112-148 15-53 (54)
72 PF04156 IncA: IncA protein; 32.2 57 0.0012 25.1 3.3 13 69-81 50-62 (191)
73 COG0466 Lon ATP-dependent Lon 31.8 1.4E+02 0.0031 29.1 6.3 55 86-140 223-280 (782)
74 PF14748 P5CR_dimer: Pyrroline 31.7 87 0.0019 22.3 3.9 24 112-135 24-47 (107)
75 PTZ00236 mitochondrial import 31.5 2.6E+02 0.0056 22.1 6.8 37 51-87 100-140 (164)
76 PRK14136 recX recombination re 31.3 1.2E+02 0.0026 26.4 5.3 27 109-135 275-301 (309)
77 KOG1965 Sodium/hydrogen exchan 31.2 97 0.0021 29.2 5.0 50 31-80 192-247 (575)
78 PRK14135 recX recombination re 31.1 1.8E+02 0.004 23.5 6.3 31 106-136 229-259 (263)
79 COG2137 OraA Uncharacterized p 31.1 1.3E+02 0.0028 23.8 5.1 30 109-138 137-166 (174)
80 PF11629 Mst1_SARAH: C termina 30.2 78 0.0017 20.4 3.0 29 94-122 10-38 (49)
81 PRK10061 DNA damage-inducible 30.0 1.1E+02 0.0023 22.4 4.1 35 113-147 36-72 (96)
82 TIGR02895 spore_sigI RNA polym 29.9 2.2E+02 0.0048 23.1 6.5 44 103-146 113-171 (218)
83 PRK14136 recX recombination re 29.9 1.6E+02 0.0035 25.7 5.8 39 102-140 169-207 (309)
84 PF11691 DUF3288: Protein of u 29.8 2.1E+02 0.0046 20.5 6.5 52 89-140 23-76 (90)
85 PRK01001 putative inner membra 29.7 2.8E+02 0.006 27.3 7.9 50 76-126 592-641 (795)
86 PF14163 SieB: Superinfection 29.6 2.4E+02 0.0052 21.1 7.0 58 61-122 37-94 (151)
87 PRK13902 alaS alanyl-tRNA synt 29.6 2.2E+02 0.0047 28.2 7.4 116 26-147 325-470 (900)
88 PF12537 DUF3735: Protein of u 29.4 1.8E+02 0.0038 19.4 5.2 21 44-65 18-38 (72)
89 PRK12727 flagellar biosynthesi 29.1 1.3E+02 0.0028 28.3 5.5 31 109-139 291-321 (559)
90 PLN02900 alanyl-tRNA synthetas 29.0 2.8E+02 0.0062 27.6 8.0 104 26-135 299-436 (936)
91 PF01169 UPF0016: Uncharacteri 29.0 1.9E+02 0.0041 19.7 5.8 43 50-92 21-65 (78)
92 PRK11677 hypothetical protein; 29.0 2.6E+02 0.0057 21.3 7.0 25 88-112 36-60 (134)
93 PF07223 DUF1421: Protein of u 28.6 80 0.0017 28.0 3.9 29 112-140 321-349 (358)
94 PF06295 DUF1043: Protein of u 28.6 2.2E+02 0.0047 21.1 5.8 27 87-113 31-57 (128)
95 PRK07634 pyrroline-5-carboxyla 28.4 97 0.0021 24.4 4.1 28 110-137 183-210 (245)
96 PRK14135 recX recombination re 28.2 2E+02 0.0043 23.3 6.0 16 35-50 22-37 (263)
97 PF14242 DUF4342: Domain of un 28.0 34 0.00073 24.1 1.2 44 30-73 20-76 (84)
98 PF11181 YflT: Heat induced st 28.0 1E+02 0.0023 21.6 3.8 27 113-139 71-97 (103)
99 TIGR02384 RelB_DinJ addiction 27.9 1.4E+02 0.0031 20.5 4.4 32 108-139 10-42 (83)
100 PRK10363 cpxP periplasmic repr 27.8 1.8E+02 0.004 23.1 5.4 51 88-138 54-104 (166)
101 smart00027 EH Eps15 homology d 27.7 93 0.002 21.2 3.4 34 108-141 25-58 (96)
102 PF14023 DUF4239: Protein of u 26.7 2.8E+02 0.006 21.6 6.4 50 71-120 12-62 (209)
103 PF08006 DUF1700: Protein of u 26.6 1.5E+02 0.0033 22.7 4.8 28 102-129 12-46 (181)
104 PF12576 DUF3754: Protein of u 26.1 2.9E+02 0.0062 20.8 6.4 37 65-101 95-131 (141)
105 KOG3747 Concentrative Na+-nucl 26.1 1.2E+02 0.0025 28.6 4.6 50 2-51 381-430 (602)
106 PF04888 SseC: Secretion syste 25.7 1.1E+02 0.0023 25.6 4.0 19 36-54 58-76 (306)
107 TIGR03499 FlhF flagellar biosy 25.2 2.1E+02 0.0045 23.7 5.7 31 108-138 132-162 (282)
108 PRK08055 chorismate mutase; Pr 25.0 3.6E+02 0.0078 21.5 9.2 59 79-137 26-90 (181)
109 COG1424 BioW Pimeloyl-CoA synt 24.9 1.2E+02 0.0025 25.3 3.9 32 107-138 72-103 (239)
110 COG3763 Uncharacterized protei 24.8 2.4E+02 0.0052 19.4 6.4 40 97-136 26-67 (71)
111 PRK01315 putative inner membra 24.7 4.7E+02 0.01 22.8 8.4 32 95-126 76-107 (329)
112 PRK06476 pyrroline-5-carboxyla 24.6 1.2E+02 0.0026 24.4 4.0 26 111-136 171-196 (258)
113 PF07553 Lipoprotein_Ltp: Host 24.5 1E+02 0.0022 19.4 2.8 26 110-135 19-47 (48)
114 PF04282 DUF438: Family of unk 24.4 2.4E+02 0.0052 19.3 6.5 43 93-135 15-57 (71)
115 PF04695 Pex14_N: Peroxisomal 24.3 90 0.0019 23.4 3.0 28 112-139 23-50 (136)
116 PF03672 UPF0154: Uncharacteri 24.3 2.3E+02 0.005 19.1 5.3 29 101-129 23-51 (64)
117 PF02096 60KD_IMP: 60Kd inner 23.7 1.4E+02 0.0029 23.2 4.1 24 104-127 46-69 (198)
118 PRK15374 pathogenicity island 23.7 6.4E+02 0.014 24.0 10.6 84 42-136 323-410 (593)
119 PF11700 ATG22: Vacuole efflux 23.5 1.7E+02 0.0037 26.3 5.1 49 39-87 293-343 (477)
120 cd08817 CARD_RIG-I_2 Caspase a 23.2 1.9E+02 0.0041 20.7 4.3 40 107-147 32-72 (88)
121 PRK08311 putative RNA polymera 23.1 3.8E+02 0.0081 21.9 6.7 40 107-146 129-182 (237)
122 PRK00199 ihfB integration host 23.1 1.5E+02 0.0034 20.3 3.9 27 112-138 3-31 (94)
123 PF12552 DUF3741: Protein of u 23.0 1E+02 0.0022 19.5 2.5 21 127-147 21-41 (46)
124 PF07662 Nucleos_tra2_C: Na+ d 22.9 2.2E+02 0.0048 23.3 5.2 45 6-51 19-63 (210)
125 PF11505 DUF3216: Protein of u 22.9 45 0.00098 24.2 1.1 21 29-49 39-59 (97)
126 TIGR00763 lon ATP-dependent pr 22.9 2.6E+02 0.0056 26.8 6.4 53 87-139 221-276 (775)
127 TIGR00659 conserved hypothetic 22.8 41 0.00089 27.9 1.0 46 36-81 138-183 (226)
128 PF09280 XPC-binding: XPC-bind 22.5 65 0.0014 21.1 1.7 41 101-148 14-54 (59)
129 PF00216 Bac_DNA_binding: Bact 22.3 1.6E+02 0.0035 19.5 3.8 25 113-137 4-29 (90)
130 COG2137 OraA Uncharacterized p 22.3 1.5E+02 0.0032 23.5 4.0 35 106-140 31-65 (174)
131 PRK02201 putative inner membra 22.2 5.5E+02 0.012 22.7 8.5 20 108-127 186-205 (357)
132 PF12732 YtxH: YtxH-like prote 22.0 2.4E+02 0.0053 18.5 6.9 39 75-114 10-48 (74)
133 PRK10328 DNA binding protein, 21.8 2.6E+02 0.0057 21.2 5.2 23 108-130 54-76 (134)
134 PF09335 SNARE_assoc: SNARE as 21.4 2.8E+02 0.0061 19.0 6.9 27 60-86 17-43 (123)
135 KOG4608 Uncharacterized conser 21.3 1E+02 0.0023 26.2 3.0 73 61-136 186-258 (270)
136 PF09435 DUF2015: Fungal prote 21.1 1.5E+02 0.0033 22.6 3.6 25 109-133 84-108 (128)
137 COG2270 Permeases of the major 21.0 2.2E+02 0.0049 25.9 5.3 53 38-90 263-317 (438)
138 PRK03449 putative inner membra 20.9 1.3E+02 0.0028 25.9 3.7 31 97-127 68-98 (304)
139 PRK14134 recX recombination re 20.9 1.7E+02 0.0036 24.7 4.3 22 106-127 89-110 (283)
140 PF03874 RNA_pol_Rpb4: RNA pol 20.8 73 0.0016 22.7 1.8 25 111-135 58-82 (117)
141 PF11829 DUF3349: Protein of u 20.7 1.7E+02 0.0037 21.1 3.7 30 108-138 21-50 (96)
142 PRK06995 flhF flagellar biosyn 20.6 2.3E+02 0.005 26.0 5.4 31 109-139 195-225 (484)
143 PF14068 YuiB: Putative membra 20.5 1.6E+02 0.0035 21.7 3.5 31 48-78 61-91 (102)
144 PRK00116 ruvA Holliday junctio 20.2 1.8E+02 0.0039 22.9 4.2 28 112-139 149-176 (192)
145 PRK01318 membrane protein inse 20.0 4.3E+02 0.0093 24.4 7.0 50 76-126 339-388 (521)
146 cd03302 Adenylsuccinate_lyase_ 20.0 6.3E+02 0.014 22.5 8.8 77 62-138 285-392 (436)
147 PHA00439 exonuclease 20.0 1.2E+02 0.0026 26.0 3.2 31 110-140 240-273 (286)
No 1
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1.5e-42 Score=283.95 Aligned_cols=124 Identities=32% Similarity=0.481 Sum_probs=121.4
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHh
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEII 105 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~ 105 (149)
...++|+||+|||+||||||+||+|+|++|++.++.+|+++|+++++|||||||+|+|+|+|+|+|.++++++||+|+++
T Consensus 14 ~~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~~~~re~~~i~ 93 (234)
T cd02433 14 HRMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERRELR 93 (234)
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
++|++|++||.++|+++|+++++|+.+++++++||+.|+++||+
T Consensus 94 ~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~ 137 (234)
T cd02433 94 KHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAR 137 (234)
T ss_pred hCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999984
No 2
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1.5e-41 Score=276.30 Aligned_cols=120 Identities=37% Similarity=0.540 Sum_probs=118.4
Q ss_pred hhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcH
Q 032010 30 EIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPD 109 (149)
Q Consensus 30 ~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe 109 (149)
+|+|++|||+||||+|+||+|+|++|++.++.+|+++|+++++|||||||+|+|+|+|+|+|.++++++||+|+++++|+
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe 80 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
.|++||.++|+.+|+++++|+++++++++||+.|+++||+
T Consensus 81 ~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHH
Confidence 9999999999999999999999999999999999999985
No 3
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=3.9e-41 Score=276.68 Aligned_cols=133 Identities=55% Similarity=0.844 Sum_probs=125.5
Q ss_pred ccchhccccccccchhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHH
Q 032010 16 LELEEHEEKHFTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVR 95 (149)
Q Consensus 16 ~~~~~~~e~h~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~ 95 (149)
|....|.++|...++|+||+|||+|||||++||+|+|++|++ ++.+|+++|+++++|||||||+|+|+|+|+|+|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~lr~~VlG~nDGlvs~~alvaGvag~~-~~~~vll~Gla~liAgA~SMa~GeYlS~~sq~d~~~~ 84 (241)
T cd02435 6 HSTSSHSEKHFTSPRIVRDIIIGLSDGLTVPFALTAGLSSLG-DTKLVITGGLAELAAGAISMGLGGYLAAKSERDHYQR 84 (241)
T ss_pred CCCCCCccccccccchHHHHHhhcchhhHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence 334567788889999999999999999999999999999988 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHH-HHHHHHhcCCCHHHHHHHHH-HHHhCChHHHHhhhC
Q 032010 96 ELKREQEEIINAPDIEAAE-CAEILAQYGAEPHEYEGVVN-ALKRNPKHWLDFMMK 149 (149)
Q Consensus 96 e~~rE~~ei~~~pe~E~~e-l~~iy~~~Gls~~~A~~v~~-~l~~~~~~~~~~Mm~ 149 (149)
+++||+|+++++|+.|++| +.++|.++|++++++.+++. .+.+||+.|+++||+
T Consensus 85 ~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~ 140 (241)
T cd02435 85 EHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMR 140 (241)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 9999999999999999999 99999999999999988766 799999999999985
No 4
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=8e-40 Score=265.45 Aligned_cols=120 Identities=29% Similarity=0.464 Sum_probs=116.9
Q ss_pred cchhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcC
Q 032010 28 SSEIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINA 107 (149)
Q Consensus 28 ~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~ 107 (149)
+.+|+|++|||+|||||++||+|+|++|++.++.+|+++|+++++|||+|||+|+|+|+|+|+|.++++++||+|+++++
T Consensus 4 ~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~~ 83 (218)
T cd02432 4 RLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERRELAED 83 (218)
T ss_pred hHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
|+.|++||.++|+++|+++++|+++++++++|| |+++||+
T Consensus 84 p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~--~~~~~~~ 123 (218)
T cd02432 84 PEAELEELADIYEERGLSPELARQVADELMAKD--ALEAHAR 123 (218)
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--hHHHHHH
Confidence 999999999999999999999999999999997 6999984
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=1.6e-39 Score=261.17 Aligned_cols=118 Identities=42% Similarity=0.689 Sum_probs=116.7
Q ss_pred hhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHH
Q 032010 31 IVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDI 110 (149)
Q Consensus 31 ~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~ 110 (149)
|+|++|||+||||+++|++|+|++|++.++++|+++|+++++|||+|||+|+|+|+|+|+|++++|++||+||++++||+
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
|++||.++|+++|+++++|+++++.+++|||. +|+||+
T Consensus 81 e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~-~~~m~~ 118 (213)
T PF01988_consen 81 EKEELVEIYRAKGLSEEDAEEIAEELSKDKDA-LDFMMR 118 (213)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCchH-HHHHHh
Confidence 99999999999999999999999999999999 999984
No 6
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=228.82 Aligned_cols=127 Identities=35% Similarity=0.576 Sum_probs=119.7
Q ss_pred ccccccccchhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHH
Q 032010 21 HEEKHFTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKRE 100 (149)
Q Consensus 21 ~~e~h~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE 100 (149)
+...|..+.+|+|++|+|.||||+++|++.+|+++++.+.++|+++|||+++|||+|||+|+|+|++||.|+|.+|.++|
T Consensus 24 ~~~~~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~Sq~D~e~ae~q~e 103 (247)
T KOG4473|consen 24 KTFDYFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKSQYDIEVAEVQME 103 (247)
T ss_pred hhhhhHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecchhhHHHHHHHHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 101 QEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 101 ~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
++++..+|+.|..|+.+||. |..+++-..++..+.++|+.|+|||||
T Consensus 104 rre~~a~~~~e~~E~~~Il~--g~~~~E~lpvi~alq~~p~~~ldf~~R 150 (247)
T KOG4473|consen 104 RREFYANSNLENDEIADILL--GEEEKEELPVIKALQRTPELMLDFIIR 150 (247)
T ss_pred HHHhhccchhhhHHHHHHhc--CCCchhccchhHHhhhChHHHHHHHHH
Confidence 99999999999999999999 666666667799999999999999986
No 7
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=99.94 E-value=2.1e-27 Score=183.45 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=74.7
Q ss_pred hhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhc
Q 032010 30 EIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIIN 106 (149)
Q Consensus 30 ~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~ 106 (149)
+|+|++|||+||||++++++++|++|++.++.+|+++|+++++||++|||+|+|+|+++|+|.+++.++||++|+..
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i~~e~~el~r 77 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRNRAR 77 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHHHHHHHHhhc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999843
No 8
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=99.85 E-value=9.6e-22 Score=151.75 Aligned_cols=64 Identities=33% Similarity=0.468 Sum_probs=62.2
Q ss_pred hhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHH
Q 032010 32 VRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVR 95 (149)
Q Consensus 32 iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~ 95 (149)
+|++|||+||||+|+|++++|++|+..++.+|+++|+++++||++||++|+|+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~ 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc
Confidence 5999999999999999999999999999999999999999999999999999999999998876
No 9
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=99.84 E-value=1.1e-20 Score=148.18 Aligned_cols=77 Identities=26% Similarity=0.230 Sum_probs=68.5
Q ss_pred hhhHHHhhcccchHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcH
Q 032010 31 IVRDIIIGVSDGLTVPFALAAGLSGADV-PSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPD 109 (149)
Q Consensus 31 ~iR~~V~G~~DGlvt~falvaGvaga~~-~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe 109 (149)
++|++|||+|||++|++++++|+++++. ++.+|+++|+++++|+++|||+|+|+|+++| +||+|+.+++|+
T Consensus 2 ~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~--------~~~~~~~~~~~~ 73 (175)
T cd02437 2 TIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGS--------LRGMLEEKEKIL 73 (175)
T ss_pred chHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhChh
Confidence 6899999999999999999999999998 9999999999999999999999999998754 455666677777
Q ss_pred HHHHHH
Q 032010 110 IEAAEC 115 (149)
Q Consensus 110 ~E~~el 115 (149)
.+.+++
T Consensus 74 ~~~~~~ 79 (175)
T cd02437 74 LRLEQM 79 (175)
T ss_pred hhHHHH
Confidence 777755
No 10
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=99.82 E-value=1e-20 Score=148.18 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=65.9
Q ss_pred hHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHH
Q 032010 33 RDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEA 112 (149)
Q Consensus 33 R~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~ 112 (149)
|++|||+||||++++++|.|+++. .++.+|+++|+++++|||+|||.|+|++.|+|++ ||++|++.+|
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~-------~e~~ele~~~---- 68 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEE-------REMRELEKSM---- 68 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----
Confidence 789999999999999999997655 5777999999999999999999999997666655 5555565555
Q ss_pred HHHHHHHHhcCCCHHHH
Q 032010 113 AECAEILAQYGAEPHEY 129 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A 129 (149)
|+++|++++.+
T Consensus 69 ------~~~~g~~~~~~ 79 (169)
T TIGR00267 69 ------LMDEGKLDDTI 79 (169)
T ss_pred ------HHhcCCCchhh
Confidence 56689988864
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=99.74 E-value=1.2e-18 Score=132.84 Aligned_cols=60 Identities=43% Similarity=0.746 Sum_probs=58.9
Q ss_pred hhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccch
Q 032010 32 VRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEAD 91 (149)
Q Consensus 32 iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d 91 (149)
+|++|||+|||+++++++++|++++..+++.|+++|+++++|+++||+.|+|+|+|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~ 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 589999999999999999999999999999999999999999999999999999999999
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.45 E-value=7e-13 Score=108.19 Aligned_cols=114 Identities=27% Similarity=0.389 Sum_probs=105.5
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHH
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADV-PSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEI 104 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~-~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei 104 (149)
..+.++.|..++|.|||++.+..++-|+..... ....+++.|+++.+.+++||+.|+|+|..+|.|....+.++++.+.
T Consensus 6 ~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~~~~~~~ 85 (229)
T COG1814 6 INRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQKERRLL 85 (229)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHH
Confidence 467899999999999999999999999999884 5667777779999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 105 INAPDIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 105 ~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
...|.-+.+++..+|..+|+++++++++.+.+.+.
T Consensus 86 ~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~ 120 (229)
T COG1814 86 ALSLGVADALVEILGALRGESEEEAREVAEQLLQG 120 (229)
T ss_pred hcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999985443
No 13
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=85.95 E-value=0.59 Score=38.16 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=49.8
Q ss_pred hhhhHHHhhcccchHHHHHHHHhhhcCCCchHHHH-HHHHHHHHHHHHHHhhhhhhh
Q 032010 30 EIVRDIIIGVSDGLTVPFALAAGLSGADVPSSIIL-IAGIAEVAAGAVSMGLGGYLA 85 (149)
Q Consensus 30 ~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~Vl-laGla~liAgaiSMa~G~YlS 85 (149)
.+..+..+|.+||++..++...|......+..... ..++.....+..+|+++.|++
T Consensus 82 ~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (229)
T COG1814 82 RRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLS 138 (229)
T ss_pred HHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999998887665555 889999999999999999997
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.64 E-value=21 Score=27.53 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhhh
Q 032010 58 VPSSIILIAGIAEVAAGAVSMGLGGY 83 (149)
Q Consensus 58 ~~~~~VllaGla~liAgaiSMa~G~Y 83 (149)
.++....+.|++.+..|.+..+.|-|
T Consensus 33 l~~~~s~~lg~~~lAlg~vL~~~g~~ 58 (191)
T PF04156_consen 33 LGALISFILGIALLALGVVLLSLGLL 58 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666657776666663
No 15
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=76.93 E-value=13 Score=25.19 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=41.9
Q ss_pred hhhhhccchHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHH
Q 032010 83 YLAAKSEADHYVRELKRE--QEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHW 143 (149)
Q Consensus 83 YlS~kse~d~~~~e~~rE--~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~ 143 (149)
|+....-+..+..++..- ..++..-+..-..+|+++.+..||+.+.=..|+.....||++.
T Consensus 13 ~~~ie~ir~~~~~~l~~~~~~~~~~~l~~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~Dp~L~ 75 (78)
T PF13767_consen 13 VLEIEPIRQEYQQELQAAEDPEEIQELQEEAQEEMVEAIEENGLTVERFNEITQAAQSDPELR 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCHHHH
Confidence 444444444444444331 1233334566678888999999999999999999999999864
No 16
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=75.55 E-value=7 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
.+++.+.+...|+++.++..++..+...|+
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~ 32 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPG 32 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCC
Confidence 578899999999999999999999975443
No 17
>PF06545 DUF1116: Protein of unknown function (DUF1116); InterPro: IPR009499 This family contains hypothetical bacterial proteins of unknown function.; PDB: 3CLQ_A.
Probab=74.44 E-value=5 Score=33.15 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
.+||.-.+...++++++..++.+-|..|+.+|++++|
T Consensus 111 ~~~L~P~l~~~~~~~~~~~~v~~fl~~nd~FFLnl~M 147 (216)
T PF06545_consen 111 LRELAPALVDTDFPKDDKAEVLEFLASNDHFFLNLSM 147 (216)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHTS-TTTTHHHHH
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHhcCCceeehHHH
Confidence 4566666778899999999999999999999999998
No 18
>PRK11677 hypothetical protein; Provisional
Probab=73.40 E-value=29 Score=26.55 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 032010 109 DIEAAECAEILA 120 (149)
Q Consensus 109 e~E~~el~~iy~ 120 (149)
+.-+++|.+.|.
T Consensus 46 e~YkqeV~~HFa 57 (134)
T PRK11677 46 EEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHH
Confidence 334444544444
No 19
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=72.39 E-value=21 Score=31.22 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
...+++.-.+.|=.+...+.++++|.++-+.|.+.+
T Consensus 276 ~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~ql 311 (336)
T PF05055_consen 276 MKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQL 311 (336)
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHH
Confidence 345566666777667778899999999999887754
No 20
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=66.71 E-value=8.4 Score=28.41 Aligned_cols=34 Identities=12% Similarity=0.354 Sum_probs=28.8
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHhCChHHHHh
Q 032010 113 AECAEILA-QYGAEPHEYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 113 ~el~~iy~-~~Gls~~~A~~v~~~l~~~~~~~~~~ 146 (149)
..+.+|.. +++++.|.|-.++..+-..|++|+|+
T Consensus 38 ~~is~ling~~~iT~dmAlrL~k~fGtspefWlNl 72 (104)
T COG3093 38 NTISELINGRRAITADMALRLAKVFGTSPEFWLNL 72 (104)
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 45555666 45999999999999999999999986
No 21
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=63.97 E-value=12 Score=21.77 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~ 146 (149)
++.++.+...||+++.++.....--.|.+.-+++
T Consensus 3 ~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 3 EEKVQQLMEMGFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHh
Confidence 3456667777999999888776555555555443
No 22
>PRK01844 hypothetical protein; Provisional
Probab=60.51 E-value=52 Score=22.75 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHH--HHHHHHH
Q 032010 60 SSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEY--EGVVNAL 136 (149)
Q Consensus 60 ~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A--~~v~~~l 136 (149)
.+.+++.++.+++.|++ +|-|++ ++.-+.++.+||.--.+-++..|.+.|-.+.++ +++-+.+
T Consensus 3 ~~~~I~l~I~~li~G~~---~Gff~a-----------rk~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 3 IWLGILVGVVALVAGVA---LGFFIA-----------RKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH-----------HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34455555556666653 344443 223345677898888888999999998766554 5555544
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.76 E-value=43 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=16.8
Q ss_pred HHhhhhhhhhhccchHHHHHHHHHHHHHh
Q 032010 77 SMGLGGYLAAKSEADHYVRELKREQEEII 105 (149)
Q Consensus 77 SMa~G~YlS~kse~d~~~~e~~rE~~ei~ 105 (149)
.++...++..+-+.-..++++++-+.+++
T Consensus 37 l~~~~~~~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 37 LLSLPSRLRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666655555544
No 24
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=59.47 E-value=23 Score=20.10 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~ 146 (149)
+..+.+...||+++.+......-..+.+.-+++
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 456677888999998888776655555544443
No 25
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=58.20 E-value=21 Score=21.81 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=25.7
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..-+..|++|..+...+|++.++.-.+...|
T Consensus 4 ~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~L 34 (45)
T PF09388_consen 4 EEIEELRQELNELAEKKGLTDPEVLELSQEL 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3446778999999999999999988877766
No 26
>PRK00523 hypothetical protein; Provisional
Probab=54.83 E-value=69 Score=22.17 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHH--HHHHHHH
Q 032010 61 SIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEY--EGVVNAL 136 (149)
Q Consensus 61 ~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A--~~v~~~l 136 (149)
+.+++.++..++.|++ +|-|++ ++.-+.++.+||.--.+-++..|.+.|-.+.++ +++-+.+
T Consensus 5 ~l~I~l~i~~li~G~~---~Gffia-----------rk~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 5 GLALGLGIPLLIVGGI---IGYFVS-----------KKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHH-----------HHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4444555555555553 343443 223345677899888888999999998765554 5555554
No 27
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=53.91 E-value=1.4e+02 Score=25.89 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=30.2
Q ss_pred hcccccc---ccchhhhHHHhhcccchHHHHHHHHhhhcCCCchHHH
Q 032010 20 EHEEKHF---TSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPSSII 63 (149)
Q Consensus 20 ~~~e~h~---~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~~~V 63 (149)
++.|-|. ...+......+.+...|+.+.++.+|++++...|..-
T Consensus 11 DR~EMH~nIG~QRdNWN~LLl~Sin~itLtAa~Magla~~~~~~~~A 57 (313)
T PF14476_consen 11 DRVEMHKNIGEQRDNWNHLLLNSINMITLTAATMAGLAGGSGAPLLA 57 (313)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Confidence 3445553 3445556678889999999999999999544444433
No 28
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=53.54 E-value=38 Score=19.26 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+.++.+...|++++.+......--.|.+.-+++++
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 45566777899999998887776666666665543
No 29
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=51.54 E-value=20 Score=27.75 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=64.3
Q ss_pred hhhHHHhhcccchH--------------HHHHHHHhhhcCCCc-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 032010 31 IVRDIIIGVSDGLT--------------VPFALAAGLSGADVP-------SSIILIAGIAEVAAGAVSMGLGGYLAAKSE 89 (149)
Q Consensus 31 ~iR~~V~G~~DGlv--------------t~falvaGvaga~~~-------~~~VllaGla~liAgaiSMa~G~YlS~kse 89 (149)
-|..+||..++|++ -+||+..|.+|-..+ ...+++..-..-++-=++||=||||.+-++
T Consensus 12 GlGs~vf~~~~g~~~~vlAaTTNgT~gnqTfGiTsGTsgC~~~g~~~~~~k~~~Fi~~n~d~La~DiA~G~GE~L~ala~ 91 (144)
T PF11220_consen 12 GLGSMVFKGQSGLVPQVLAATTNGTSGNQTFGITSGTSGCSTDGCLGYNEKTAVFINSNMDNLAQDIARGQGEHLDALAE 91 (144)
T ss_pred CcceeeecCCCCcHHHHHHHHhcccccCcceeeecccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 36677888888842 168888888877422 456778888889999999999999988664
Q ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhCCh
Q 032010 90 ADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEY-EGVVNALKRNPK 141 (149)
Q Consensus 90 ~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A-~~v~~~l~~~~~ 141 (149)
.=--..+-+. ..-..-++.-.+||...-.+.++. ..+...+.+|+.
T Consensus 92 llgv~~~d~~------~f~~~~q~nF~~if~s~~~t~~~v~~~i~~~~~~d~~ 138 (144)
T PF11220_consen 92 LLGVPAEDRA------AFGAVLQENFASIFPSESVTSEEVLDNIVAVMAGDPA 138 (144)
T ss_pred HhCCCHhhHH------HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCHH
Confidence 3211000000 001112233445666666666655 446666666654
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=50.80 E-value=24 Score=21.77 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
..+|+..++...|++++++..+...+-.+.+
T Consensus 17 ~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~ 47 (67)
T cd00052 17 SGDEARPFLGKSGLPRSVLAQIWDLADTDKD 47 (67)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 5678888888889999999988888876654
No 31
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=49.62 E-value=46 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l~ 137 (149)
...++-+...+..+||+.+++..+.+...
T Consensus 126 ~~~k~Ki~~~L~rkGF~~~~I~~~l~~~~ 154 (157)
T PRK00117 126 AKEKAKLVRFLARRGFSMDVIQRVLRNAL 154 (157)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhhh
Confidence 36788999999999999999999888754
No 32
>PF06791 TMP_2: Prophage tail length tape measure protein; InterPro: IPR009628 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpH, tail tape measure protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened [].
Probab=47.47 E-value=1.5e+02 Score=23.84 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 032010 42 GLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQ 121 (149)
Q Consensus 42 Glvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~ 121 (149)
|+.-.+.-+.|..+.-.+|..++++.++.+ ..+ |.....|.+.++..+... -..-..-..+.+.+.+-+..
T Consensus 58 G~~~a~~~~~~~~~~~~~p~~~~~ga~~~l-----~~A---~~~~~~e~~~~~~al~~t-G~~aG~Ta~~L~~~A~~~~~ 128 (210)
T PF06791_consen 58 GVGPALRALGGAIAGLVSPVGLAAGAVGAL-----GAA---AYKGSKEAEAFNKALILT-GNAAGVTAEQLAAMADAIAA 128 (210)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555566666644422222 222 333333333333333221 11222335667778777778
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 032010 122 YGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 122 ~Gls~~~A~~v~~~l~~~~ 140 (149)
.|.+.+.|+.+...|...-
T Consensus 129 ~~~t~~~A~~al~~la~tG 147 (210)
T PF06791_consen 129 SGGTQGEAREALAALAATG 147 (210)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 8899998888887776543
No 33
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=46.25 E-value=37 Score=23.97 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=26.0
Q ss_pred HHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 032010 76 VSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILA 120 (149)
Q Consensus 76 iSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~ 120 (149)
+..=+|.||+.+-+-...+...-+|.|++-+ +.|++-|..++.
T Consensus 34 ~A~~iGdyLA~~vdP~N~EerlLkELW~va~--e~Eq~~LA~lmv 76 (81)
T PF11588_consen 34 LAYQIGDYLAKNVDPKNPEERLLKELWDVAD--EEEQHALANLMV 76 (81)
T ss_dssp HHHHHHHHHHT-----SHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 3445789999998888888888888887654 456666666554
No 34
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=46.09 E-value=66 Score=23.02 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.+...++-+...+..+||+.+++..+.+.
T Consensus 90 ~~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 90 SDRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp -CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 46889999999999999999999988775
No 35
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=46.01 E-value=1.6e+02 Score=23.85 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHH
Q 032010 96 ELKREQEEIINAPDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 96 e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~ 127 (149)
++++-+.+..++|+.-.+|+.++|++.|+++=
T Consensus 66 ~~~~i~~k~k~d~~~~~~e~~~Lyk~~~inp~ 97 (223)
T PRK00145 66 EIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPL 97 (223)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHhCCCch
Confidence 33444444557888889999999999999863
No 36
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=45.95 E-value=95 Score=28.74 Aligned_cols=102 Identities=15% Similarity=0.267 Sum_probs=51.5
Q ss_pred ccchhhhHHHhhcccchHH---HHH----------H-HHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchH
Q 032010 27 TSSEIVRDIIIGVSDGLTV---PFA----------L-AAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADH 92 (149)
Q Consensus 27 ~~~~~iR~~V~G~~DGlvt---~fa----------l-vaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~ 92 (149)
.-.+++|+++|-..||++= --| + .+-..|.... ++.-|...+...+. ..|=..+..++.
T Consensus 274 vIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~~~lg~~~~----fl~~lv~~vi~~~~---~~ypel~~~~~~ 346 (552)
T PF01411_consen 274 VIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFGRKLGIEEP----FLYELVPVVIESMG---DFYPELKENKDY 346 (552)
T ss_dssp HHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SS------HHHHHHHHHHHHT---TTGTHHHHCHHH
T ss_pred EEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHHHHhCCCcc----chHHHHHHHHHHhh---ccChhhhhhHHH
Confidence 3478999999999999751 000 0 0112222211 23444444444333 345444555565
Q ss_pred HHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 93 YVRELKREQEEIIN------------------APDIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 93 ~~~e~~rE~~ei~~------------------~pe~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
....++.|+..... ...---+.+..+|..+|||.|....++++
T Consensus 347 I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsge~aF~LYDTyGfP~Dlt~eia~e 407 (552)
T PF01411_consen 347 IKDIIKEEEERFLKTLERGLKLLEKLIKKLKKKKELSGEDAFKLYDTYGFPLDLTEEIAEE 407 (552)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEE-HHHHHHHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChHHheeehhccCCCHHHHHHHHHH
Confidence 65555555533321 11112356778899999999999888874
No 37
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=45.86 E-value=85 Score=26.54 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 75 AVSMGLGGYLAAKSEADHYVRELKREQEEIINAP-----DIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 75 aiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~p-----e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
.-=|.+|.|= .+|..+.+.+.|-+.-+++.| .....-|.+.|...|+. ++|...+..|-.|+
T Consensus 168 ~~Em~IaryY---~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~-~~a~~~~~vl~~N~ 234 (254)
T COG4105 168 GHEMAIARYY---LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT-DEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHHHHH---HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcC
Confidence 3457777763 477778888888887788766 66777889999999998 46777777777664
No 38
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=45.72 E-value=54 Score=26.09 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHhhcccch-HHHHHHHHhhhcCCCchHHHHHHHH-HH-HHHHHHHH----------hhhhhhhhhccchHHHHHHHHHH
Q 032010 35 IIIGVSDGL-TVPFALAAGLSGADVPSSIILIAGI-AE-VAAGAVSM----------GLGGYLAAKSEADHYVRELKREQ 101 (149)
Q Consensus 35 ~V~G~~DGl-vt~falvaGvaga~~~~~~VllaGl-a~-liAgaiSM----------a~G~YlS~kse~d~~~~e~~rE~ 101 (149)
..||..|-- =..|-.+.++.|.| +.....+.+. .. -+..||.- |+|.. +..... -|.+...
T Consensus 58 ~LyGF~~~~Er~lF~~L~~V~GIG-pK~Al~iL~~~~~~el~~aI~~~d~~~L~~ipGiGkK----tAerIi-leLk~k~ 131 (191)
T TIGR00084 58 LLFGFNTLEERELFKELIKVNGVG-PKLALAILSNMSPEEFVYAIETEEVKALVKIPGVGKK----TAERLL-LELKGKL 131 (191)
T ss_pred eeeCCCCHHHHHHHHHHhCCCCCC-HHHHHHHHhcCCHHHHHHHHHhCCHHHHHhCCCCCHH----HHHHHH-HHHHhhh
Confidence 468988888 67899999999988 3333333332 11 23333333 44433 222222 1111111
Q ss_pred --H-HHhc--CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 102 --E-EIIN--APDIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 102 --~-ei~~--~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
+ .+.. ......+++.+.+...|+++.+|+.++..+.+.|
T Consensus 132 ~~~~~~~~~~~~~~~~~e~~~aL~~LGy~~~e~~~ai~~~~~~~ 175 (191)
T TIGR00084 132 KGNKNLEMFTPTEAARDELFEALVSLGYKPQEIQQALKKIKNKP 175 (191)
T ss_pred cccccccccccccchHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 1 0111 1123468899999999999999999999987533
No 39
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=45.48 E-value=1.5e+02 Score=29.10 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCc-----hHHHHHH--------HHHHHHHHHHHHhhhhhhhhhccchH
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVP-----SSIILIA--------GIAEVAAGAVSMGLGGYLAAKSEADH 92 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~-----~~~Vlla--------Gla~liAgaiSMa~G~YlS~kse~d~ 92 (149)
..-.+++|+++|-..||++= +-.|.+.. .+++..+ -|..++.--+.+--..|=..+..++.
T Consensus 268 rviaDH~R~~~f~i~DG~~P------sn~grgYvlRrilRRa~r~~~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~ 341 (865)
T PRK00252 268 RVIADHIRAVAFLIADGVLP------SNEGRGYVLRRILRRAVRHGRLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDL 341 (865)
T ss_pred EEEcchHHHHHHHHccCccc------CCCCcchHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHH
Confidence 34578999999999999851 11122211 1111111 14445555555544445444555555
Q ss_pred HHHHHHHHHHHHhcCc------------------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 93 YVRELKREQEEIINAP------------------DIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 93 ~~~e~~rE~~ei~~~p------------------e~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.+..++.|+..+..-- .---+.+..+|..+|||.|....++.+
T Consensus 342 i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e 402 (865)
T PRK00252 342 IEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARE 402 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHhccCCCHHHHHHHHHH
Confidence 5555555543332211 122356678899999999999988864
No 40
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=45.43 E-value=65 Score=25.22 Aligned_cols=58 Identities=3% Similarity=0.052 Sum_probs=45.2
Q ss_pred hhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHH
Q 032010 86 AKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHW 143 (149)
Q Consensus 86 ~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~ 143 (149)
+..+++-.+.-....+.+.......++.+|.++...-++.+..++..++........+
T Consensus 59 T~~Qrqqi~~i~~~~~~a~~~~~~~~r~~l~~li~a~~~D~aka~a~~~~m~~~~~~~ 116 (160)
T COG3678 59 TRAQRQQIRDLMQAQRRAQREQLRSKRRALHELIAADQFDEAKARAQAEKMENQRQAL 116 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777778889999999999999999988888887766544433
No 41
>PRK14134 recX recombination regulator RecX; Provisional
Probab=45.06 E-value=1.4e+02 Score=25.06 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
..++-|...|..+|++.++...|.+.+..+
T Consensus 253 k~~~Kl~~~L~rkGf~~e~I~~vl~~~~~~ 282 (283)
T PRK14134 253 KIYRRLSNYLLRRGYSWEEVKKSLNELLYE 282 (283)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999999999988654
No 42
>PRK11375 allantoin permease; Provisional
Probab=45.00 E-value=63 Score=29.08 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=46.5
Q ss_pred hhhhHHHhhcccch-HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHH
Q 032010 30 EIVRDIIIGVSDGL-TVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYV 94 (149)
Q Consensus 30 ~~iR~~V~G~~DGl-vt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~ 94 (149)
++..-+.+=..+++ ++++.+.+|+.+.+.+.+..+++-+.+-+-+++-|++=.+.+.|.-.-+..
T Consensus 28 ~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v 93 (484)
T PRK11375 28 KTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAM 93 (484)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCChhH
Confidence 34444445555666 344456777778889988888888888888888888888888887665553
No 43
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=44.92 E-value=32 Score=33.03 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=26.6
Q ss_pred HhhcccchH--HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHH
Q 032010 36 IIGVSDGLT--VPFALAAGLSGADVPSSIILIAGIAEVAAGAV 76 (149)
Q Consensus 36 V~G~~DGlv--t~falvaGvaga~~~~~~VllaGla~liAgai 76 (149)
+.|+.=|-+ ++.|++.|++..+ .+..+-+.||++++||.|
T Consensus 192 ~gG~~~Gaa~Gv~~Gli~~l~~~~-~~~~~~~~af~GLlaG~f 233 (764)
T TIGR02865 192 IGGSGAGAAGGVVIGVILGLANNA-NLYQIGVFGFAGLLGGIF 233 (764)
T ss_pred hcCchHhHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhh
Confidence 344444432 3556666666554 778999999999999864
No 44
>PRK14137 recX recombination regulator RecX; Provisional
Probab=42.64 E-value=1.4e+02 Score=24.02 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
...++.+...+..+||+.+.+..+.+.+...+
T Consensus 152 ~~~k~K~~~~L~rRGFs~~~I~~al~~~~~~~ 183 (195)
T PRK14137 152 RDPRASAYAFLARRGFSGAVIWPAIREVAALA 183 (195)
T ss_pred hhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 35678899999999999999999998877654
No 45
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=42.44 E-value=2.6e+02 Score=25.30 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhhhh---hhccchHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 032010 71 VAAGAVSMGLGGYLA---AKSEADHYVREL-KREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 71 liAgaiSMa~G~YlS---~kse~d~~~~e~-~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~ 137 (149)
++|-..-|++--+-| ++.|++.+++.. +..+-|+.|.-+.....+..+|.+-|.|+++|++=+..+-
T Consensus 16 ~iA~l~It~~i~hQs~tLaq~ei~~fe~~ml~akEteL~~~v~lA~sAIr~v~~~ag~sdeaak~evk~iL 86 (459)
T COG4564 16 LIAILSITAIITHQSKTLAQREIEIFEANMLEAKETELLNLVNLALSAIRLVYNNAGPSDEAAKQEVKAIL 86 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 444444444444443 255777766655 4445678888999999999999999999999977555443
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.31 E-value=1.4e+02 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=7.8
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 032010 103 EIINAPDIEAAECAEILA 120 (149)
Q Consensus 103 ei~~~pe~E~~el~~iy~ 120 (149)
+....-+.-+++|.+.|.
T Consensus 36 ~~k~el~~yk~~V~~HF~ 53 (128)
T PF06295_consen 36 QAKQELEQYKQEVNDHFA 53 (128)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444445554443
No 47
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=40.60 E-value=99 Score=24.22 Aligned_cols=77 Identities=10% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHH
Q 032010 48 ALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 48 alvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~ 127 (149)
.+++.++++..-....+..+...+++..++++.+..+.....+..... .|...|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k----------------------~~~~~gls~~ 68 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRK----------------------FLKEAGLSDR 68 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchh----------------------HhhhcCCChh
Q ss_pred HHHHHHHHHHhCChHHHHh
Q 032010 128 EYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 128 ~A~~v~~~l~~~~~~~~~~ 146 (149)
+...+-+.+..-.+.+-..
T Consensus 69 e~~~~~~~l~ea~~~i~~i 87 (199)
T PF10112_consen 69 EYEYIREILEEAKEKIRRI 87 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 48
>PRK10098 putative dehydrogenase; Provisional
Probab=40.47 E-value=47 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
..+.-++-+.++|.+.|+++++|+.+++.|..
T Consensus 8 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 39 (350)
T PRK10098 8 DAQTLHSFVQAVWRQAGSEEREAKLVADHLVA 39 (350)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34566777899999999999999999998753
No 49
>PF07130 YebG: YebG protein; InterPro: IPR009813 This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS [].; PDB: 3ERM_E.
Probab=40.07 E-value=97 Score=21.56 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQY--GAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~--Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
+.+...+++. |++++.++.++=.|++|++.+...+
T Consensus 36 d~L~~~L~~~~~~lde~~~E~l~l~LA~~kd~~~~~l 72 (75)
T PF07130_consen 36 DNLTDFLEQSVLGLDEAQAEELALYLAENKDELAKAL 72 (75)
T ss_dssp HHHHHHHHHHSTT--HHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCHHHHHHHH
Confidence 4566666654 7788899999999999999987754
No 50
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=39.99 E-value=47 Score=22.21 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhhhh
Q 032010 71 VAAGAVSMGLGGYLA 85 (149)
Q Consensus 71 liAgaiSMa~G~YlS 85 (149)
++...+|+++|.+++
T Consensus 43 ~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 43 VALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455667777776654
No 51
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=39.95 E-value=17 Score=29.72 Aligned_cols=47 Identities=23% Similarity=0.382 Sum_probs=40.2
Q ss_pred HhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 032010 36 IIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGG 82 (149)
Q Consensus 36 V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~ 82 (149)
-+|++..|+..|-++.|+.|+-..+...-..++=.-+|-+++||...
T Consensus 128 ~iGG~~sLta~~VvitGi~Ga~~g~~llk~~~I~~~~A~GlalG~~s 174 (215)
T PF04172_consen 128 QIGGIPSLTAVFVVITGILGAVLGPPLLKLLRIKDPVARGLALGTAS 174 (215)
T ss_pred HhCChHHHHHHHHHHHhhHHHHhHHHHHhHcccccHHHHHHHhccch
Confidence 57889999999999999999999888888888888888888887654
No 52
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=39.58 E-value=2.6e+02 Score=26.42 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=58.4
Q ss_pred cccchhhhHHHhhccc--chHHHHHHHHhhhcCCCc-----hHHHHH---H-----HHHHHHHHHHHHhhhhhhhhhccc
Q 032010 26 FTSSEIVRDIIIGVSD--GLTVPFALAAGLSGADVP-----SSIILI---A-----GIAEVAAGAVSMGLGGYLAAKSEA 90 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~D--Glvt~falvaGvaga~~~-----~~~Vll---a-----Gla~liAgaiSMa~G~YlS~kse~ 90 (149)
..-.+++|+++|-..| |++ =+-.|.+.. ..+|.. . -|..++.-.+.+--..|=..+..+
T Consensus 277 rvIaDH~R~~~f~i~D~~Gv~------PsN~grGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~ 350 (594)
T PRK01584 277 RIIADHIRAACFILGDPFVVL------PSNVGQGYVLRRLIRRSIRHAKKLGIESHFLADLVDSVEEIYGSFYPELTEKK 350 (594)
T ss_pred EEEecHHHHHHHHhhcccCCC------CCCCCCchHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhhhChHHHHhH
Confidence 3457899999999999 653 111222211 011111 1 133344444444444565555556
Q ss_pred hHHHHHHHHHHHHHhcCc------------------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 91 DHYVRELKREQEEIINAP------------------DIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 91 d~~~~e~~rE~~ei~~~p------------------e~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
+.....++.|+......- .---+.+..+|..+|||.|..+.++++
T Consensus 351 ~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e 413 (594)
T PRK01584 351 DFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASE 413 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHhhhccCCCCHHHHHHHHHH
Confidence 666666666654433211 122345667888999999999888865
No 53
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.39 E-value=54 Score=29.06 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhhC
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMMK 149 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm~ 149 (149)
...+.+++++-+...|+.++++...-+.-+-|||+.|++++.
T Consensus 152 ~g~~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~t 193 (378)
T TIGR00601 152 VGSERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLT 193 (378)
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 345888889999999999999999999999999999998863
No 54
>PF03035 RNA_capsid: Calicivirus putative RNA polymerase/capsid protein; InterPro: IPR004278 Caliciviruses are a small round-structured virus group defined by RNA-dependent RNA polymerase and capsid diversity.
Probab=39.02 E-value=1.9e+02 Score=24.18 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.1
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 032010 116 AEILAQYGAEPHEYEGVV 133 (149)
Q Consensus 116 ~~iy~~~Gls~~~A~~v~ 133 (149)
...|..-||++.||...+
T Consensus 72 ~~~L~~gGFS~aDAAR~a 89 (226)
T PF03035_consen 72 QGVLTAGGFSPADAARGA 89 (226)
T ss_pred HHHHHhcCCCHHHHHHHh
Confidence 456888999999997653
No 55
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=38.20 E-value=2.3e+02 Score=27.82 Aligned_cols=104 Identities=11% Similarity=0.137 Sum_probs=58.5
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCc-----hHHHHH---H-----HHHHHHHHHHHHhhhhhhhhhccchH
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVP-----SSIILI---A-----GIAEVAAGAVSMGLGGYLAAKSEADH 92 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~-----~~~Vll---a-----Gla~liAgaiSMa~G~YlS~kse~d~ 92 (149)
..-.+++|++.|-..||++= +-.|.+.. .+++.. . -|..++.-.+.+--..|=..+..++.
T Consensus 275 rviaDH~R~~~f~i~DGv~P------sN~grgYvlRrilRRa~r~~~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~ 348 (851)
T TIGR00344 275 RVIADHTRALAFMLADGVVP------SNEGRGYVLRRLIRRALRHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEF 348 (851)
T ss_pred eeehhhhhhhhhhhccCccc------CCCCCchhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHH
Confidence 35578999999999999851 11222211 011111 0 03334444444444445555555565
Q ss_pred HHHHHHHHHHHHhcCc-----------------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 93 YVRELKREQEEIINAP-----------------DIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 93 ~~~e~~rE~~ei~~~p-----------------e~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
....+..|+..+..-- .---+....+|..+|||.|....++++
T Consensus 349 i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~~i~g~~af~LydTyGfP~dlt~~~a~e 408 (851)
T TIGR00344 349 VEQILELEEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEE 408 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 5555555553333211 122356678899999999999988865
No 56
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=37.61 E-value=73 Score=23.54 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=32.7
Q ss_pred hhcccchHHHHHHHHhhhcCC-----CchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHH
Q 032010 37 IGVSDGLTVPFALAAGLSGAD-----VPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYV 94 (149)
Q Consensus 37 ~G~~DGlvt~falvaGvaga~-----~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~ 94 (149)
+|--=||+.+|.-++...+.+ .+-..-+++.+.+++.+-+++-+-.|+..+.++...+
T Consensus 71 lGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~tT~~GL~vai~~~~~~~~l~~~~~~~~~~ 133 (139)
T PF01618_consen 71 LGTVIGMIEAFQALAETGSGDPSQLAGGISVALITTAYGLVVAIPALPFYNYLKRRVERIIHR 133 (139)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666665554322211 1234555666666777777777777777666665544
No 57
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=37.53 E-value=47 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
+.+.-.+.++|+++++|..+++.++.
T Consensus 7 E~v~~~L~~~G~gR~~Ah~lv~~~a~ 32 (81)
T PF10397_consen 7 ERVMLALAEKGLGRQEAHELVQEAAM 32 (81)
T ss_dssp HHHHHHHHHTTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555677899999999998887653
No 58
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=37.27 E-value=1.6e+02 Score=29.16 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=57.3
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCch-----HHHHHH-------HHHHHHHHHHHHhhhhhhhhhccchHH
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPS-----SIILIA-------GIAEVAAGAVSMGLGGYLAAKSEADHY 93 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~-----~~Vlla-------Gla~liAgaiSMa~G~YlS~kse~d~~ 93 (149)
..-.+++|++.|-..||++= +-.|.|..- +++..+ .|..++.--+..--..|=..+..+|+.
T Consensus 329 rvIaDH~R~~~f~i~DGv~P------sN~grGYvlRrilRRa~r~~~~lg~~~~l~~lv~~~~~~~~~~ypel~~~~~~I 402 (902)
T TIGR03683 329 YAIADHTRCLAFMLGDGIVP------SNVKEGYLARLVIRRTLRLMRELGLDIPLSDLVEMQLEELKKIYPELKENKDYI 402 (902)
T ss_pred EEEcchHHHHHHHHhcCCcc------CCCCcchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhhhChhHHHhHHHH
Confidence 45578999999999999751 112222111 111110 133333333333333344444455555
Q ss_pred HHHHHHHHHHHhc---------------CcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 94 VRELKREQEEIIN---------------APDIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 94 ~~e~~rE~~ei~~---------------~pe~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
...++.|+..... ...---+++..+|..+|||+|....++++
T Consensus 403 ~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~~~~i~g~~~f~LyDTyGfP~dl~~eia~e 459 (902)
T TIGR03683 403 LDILDLEEEKYRETLERGRRIVERLLKTKKEIPLDDLIELYDSHGIPPEIVKEIAAE 459 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 5555444433221 11234467889999999999999998875
No 59
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=36.69 E-value=1.5e+02 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHH
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGV 132 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v 132 (149)
....-+.....++...|||.+.+..|
T Consensus 66 ~~~e~~~~~~~~l~e~GLp~~l~~~l 91 (125)
T PF14265_consen 66 ARRELRSEAKKVLAEKGLPAELADFL 91 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34445566788899999999977766
No 60
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=35.90 E-value=1.8e+02 Score=21.70 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
.+.-..||.+-|..+|++++.+..+.+.+..
T Consensus 24 r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~ 54 (157)
T PRK00117 24 REHSRAELRRKLAAKGFSEEVIEAVLDRLKE 54 (157)
T ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555667777777777777777777777665
No 61
>PRK14137 recX recombination regulator RecX; Provisional
Probab=34.71 E-value=1.9e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 90 ADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 90 ~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
-+.++....+-. .+-...+.-..||.+-|..+|++++.+..|.+.|..+.
T Consensus 36 ~e~~~~~~~~Al-~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~g 85 (195)
T PRK14137 36 DEAREALLAYAF-RALAARAMTAAELRAKLERRSEDEALVTEVLERVQELG 85 (195)
T ss_pred HHHHHHHHHHHH-HHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 344443333333 23345567778888888888888888888888887653
No 62
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=34.51 E-value=58 Score=19.62 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCHHHHH-HHHHHHHhCChHHHHh
Q 032010 113 AECAEILAQYGAEPHEYE-GVVNALKRNPKHWLDF 146 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~-~v~~~l~~~~~~~~~~ 146 (149)
-.+...|.+.-++..+.. .|...+..|||++.+|
T Consensus 8 L~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F 42 (47)
T PF02671_consen 8 LKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEF 42 (47)
T ss_dssp HHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHH
Confidence 356677888888877774 4666667788887765
No 63
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=34.45 E-value=2.6e+02 Score=24.09 Aligned_cols=56 Identities=29% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHhhcccchHHHHHHHHhhhcCCCc---hHHHHHHHHHHHHHHH---HHHhhhhhhhhhcc
Q 032010 34 DIIIGVSDGLTVPFALAAGLSGADVP---SSIILIAGIAEVAAGA---VSMGLGGYLAAKSE 89 (149)
Q Consensus 34 ~~V~G~~DGlvt~falvaGvaga~~~---~~~VllaGla~liAga---iSMa~G~YlS~kse 89 (149)
+-|.|..=|+++....+.|++-+... +.++..+|++-..|++ ++-.+.+++..++.
T Consensus 98 snvv~ss~g~vsGilsIlGLaLAPvT~G~SL~LsaaG~GlgaaagvT~i~t~I~e~~~~~~~ 159 (313)
T PF05461_consen 98 SNVVGSSTGAVSGILSILGLALAPVTAGGSLALSAAGIGLGAAAGVTSISTSIVEHVSNKSA 159 (313)
T ss_pred HHHHhhhHHHHhhHHHHHhHHhccccccchHHHHHhhhHHHHHhhhhHHHHHHHHHHHhHHH
Confidence 34555555555544445555444432 4556666666555544 44555555555443
No 64
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=34.40 E-value=1.3e+02 Score=21.16 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 91 DHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 91 d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
++|..-.++-...-....+.|.+.|..++..++++++-...+...
T Consensus 42 ~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R 86 (93)
T cd00238 42 KYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRR 86 (93)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 566666666555566778999999999999988999877766543
No 65
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=34.38 E-value=46 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 032010 59 PSSIILIAGIAEVAAGAVSMGLGGYLAAKSEA 90 (149)
Q Consensus 59 ~~~~VllaGla~liAgaiSMa~G~YlS~kse~ 90 (149)
.-.+.-.+++++++++..-+++|.|+..-+||
T Consensus 34 giStmAAAalGN~vSDv~Gi~~~~~vE~~~~r 65 (111)
T PF10507_consen 34 GISTMAAAALGNLVSDVAGIGLGGYVERLAQR 65 (111)
T ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 34577789999999999999999998666554
No 66
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.10 E-value=84 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.7
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
.+|. ...+.+.+...|++++.++++++.+..+
T Consensus 72 ~~p~--~~~l~~~L~~~g~~~~l~~~l~~~~~~~ 103 (374)
T PRK14722 72 RNPV--HGALTKYLFAAGFSAQLVRMIVDNLPEG 103 (374)
T ss_pred cCcH--HHHHHHHHHHCCCCHHHHHHHHHhhhhh
Confidence 4454 4888999999999999999999988654
No 67
>PRK15358 pathogenicity island 2 effector protein SseF; Provisional
Probab=33.80 E-value=1.4e+02 Score=24.67 Aligned_cols=90 Identities=26% Similarity=0.285 Sum_probs=45.8
Q ss_pred hhHHHhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHH--HHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcH
Q 032010 32 VRDIIIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVA--AGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPD 109 (149)
Q Consensus 32 iR~~V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~li--AgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe 109 (149)
||+.+-|.-=|+....++++| |++ .-.++++|++=.+ +++ .-|+-.|-+.+-++|-. .---|
T Consensus 45 iral~AgV~FgvSIaatV~SG--GAg--~PLlilAGv~l~LAVaD~-aCAYhNW~~~s~gkegL-----------~MGSD 108 (239)
T PRK15358 45 IRALGATVVFGLSVAAAVISG--GAG--LPIAILAGAALVIAIGDA-CCAYHNYQLICQQKEPL-----------QTASD 108 (239)
T ss_pred HHHHHhhhheeeeeeeeeecC--Ccc--chHHHHhhhHHHHHHHHH-HHHhhhhhHHhcCCCCC-----------CcccH
Confidence 455444433333344444444 333 3344455544333 222 23444454444444322 12223
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~ 137 (149)
.-.+-+..+...-|.|++.|+++++..+
T Consensus 109 AIanaVf~Lak~cGaSde~AkkiAr~tS 136 (239)
T PRK15358 109 SVALVVSALALKCGASLNCANTLANCLS 136 (239)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445556666677999999999988654
No 68
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=33.64 E-value=64 Score=25.10 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=20.6
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCH
Q 032010 101 QEEIINAPDIEAAECAEILAQYGAEP 126 (149)
Q Consensus 101 ~~ei~~~pe~E~~el~~iy~~~Gls~ 126 (149)
+.+..+++..-.+|+.++|++.|+++
T Consensus 42 ~~k~k~~~~~~~~e~~~l~k~~~~~p 67 (181)
T TIGR03592 42 QEKYKDDPQKLQQEMMKLYKEEGVNP 67 (181)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhCCCc
Confidence 33444667777899999999999997
No 69
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.45 E-value=1.9e+02 Score=23.91 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHH
Q 032010 70 EVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWL 144 (149)
Q Consensus 70 ~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~ 144 (149)
..+-.-|++|.+.+=..+.|+.+..+.. +.+.+++..-|+|..+.+.|=+...+|+-+|.
T Consensus 136 ~~lDd~l~~G~~ile~l~~Q~~~L~~~~---------------~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~ 195 (213)
T KOG3251|consen 136 NMLDDLLESGSAILENLVEQRLTLKGTQ---------------KKILDILNTLGLSNQTIRLIERRVREDKIIFY 195 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHH
Confidence 4677888888888888888888776655 45778999999999999999999999988775
No 70
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=33.07 E-value=56 Score=22.28 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032010 60 SSIILIAGIAEVAAGAV 76 (149)
Q Consensus 60 ~~~VllaGla~liAgai 76 (149)
...+.+.|+..+++|++
T Consensus 64 ~~~~~v~G~~v~~~~~~ 80 (82)
T PF11239_consen 64 QPPLGVAGFVVMVAGAV 80 (82)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34477777777777654
No 71
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.48 E-value=1.4e+02 Score=19.50 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=28.0
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHH-hCChHHHHhhh
Q 032010 112 AAECAEILA-QYGAEPHEYEGVVNALK-RNPKHWLDFMM 148 (149)
Q Consensus 112 ~~el~~iy~-~~Gls~~~A~~v~~~l~-~~~~~~~~~Mm 148 (149)
++|++..+. ..++.|.-...|=+.|. .||++|-....
T Consensus 15 k~E~v~~L~~~a~I~P~~T~~VW~~Le~eN~eFF~aY~~ 53 (54)
T PF09713_consen 15 KEECVRALQKQANIEPVFTSTVWQKLEKENPEFFKAYYT 53 (54)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCHHHHHHhhc
Confidence 456766665 55999999999888887 68888866543
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.23 E-value=57 Score=25.11 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhh
Q 032010 69 AEVAAGAVSMGLG 81 (149)
Q Consensus 69 a~liAgaiSMa~G 81 (149)
..++++++....-
T Consensus 50 ~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 50 VVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 4466666655543
No 73
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=1.4e+02 Score=29.09 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=38.9
Q ss_pred hhccchHHHHHHHH-HHHHHhc--CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 86 AKSEADHYVRELKR-EQEEIIN--APDIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 86 ~kse~d~~~~e~~r-E~~ei~~--~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
.|+|||+|.+|.-+ -+.|+-. +...|.+++.+-+.+.+++++.-..+-.+|.+-.
T Consensus 223 eK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~ 280 (782)
T COG0466 223 EKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLE 280 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 36788888776533 3344432 3346789999999999999987777777776643
No 74
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=31.68 E-value=87 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.+.|.+--.++||++++|+.++..
T Consensus 24 ~eal~~a~v~~Gl~~~~A~~lv~~ 47 (107)
T PF14748_consen 24 IEALADAAVAQGLPREEARKLVAQ 47 (107)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356777778899999999987765
No 75
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=31.52 E-value=2.6e+02 Score=22.11 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=18.8
Q ss_pred HhhhcCCCchHHHHHHHHHHHH----HHHHHHhhhhhhhhh
Q 032010 51 AGLSGADVPSSIILIAGIAEVA----AGAVSMGLGGYLAAK 87 (149)
Q Consensus 51 aGvaga~~~~~~VllaGla~li----AgaiSMa~G~YlS~k 87 (149)
.|+.++...+..+..+++.+.+ -.++|+++-.|....
T Consensus 100 Ga~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~ 140 (164)
T PTZ00236 100 GGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRT 140 (164)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444445544444444433 356677777665533
No 76
>PRK14136 recX recombination regulator RecX; Provisional
Probab=31.32 E-value=1.2e+02 Score=26.40 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
..+++.+...|..+||+.+....+.+.
T Consensus 275 ~kek~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 275 PAERAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 356778899999999999999887754
No 77
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=31.17 E-value=97 Score=29.21 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=42.8
Q ss_pred hhhHHHhh---cccch-HHHHHHHHhhhcCCCchHHH--HHHHHHHHHHHHHHHhh
Q 032010 31 IVRDIIIG---VSDGL-TVPFALAAGLSGADVPSSII--LIAGIAEVAAGAVSMGL 80 (149)
Q Consensus 31 ~iR~~V~G---~~DGl-vt~falvaGvaga~~~~~~V--llaGla~liAgaiSMa~ 80 (149)
-+-+.||| .||+. ++.|..+-.....+.+.+.. .+..|..++-|+..||+
T Consensus 192 ~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv 247 (575)
T KOG1965|consen 192 KLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGV 247 (575)
T ss_pred ceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35567777 79999 78889999999999988888 88899999999999983
No 78
>PRK14135 recX recombination regulator RecX; Provisional
Probab=31.11 E-value=1.8e+02 Score=23.53 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=26.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..|...++-+...+..+||+.++...+.+.+
T Consensus 229 ~~~~k~k~K~~~~L~rrGF~~~~I~~~l~~~ 259 (263)
T PRK14135 229 YDGYELKQKLKQALYRKGFSYDDIDSFLREY 259 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 3456778999999999999999999888765
No 79
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=31.06 E-value=1.3e+02 Score=23.82 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
..+++-+...|..+||+.+++..+...+..
T Consensus 137 ~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~~ 166 (174)
T COG2137 137 KKEKAKIQRFLLRRGFSYEVIKEALNEAEE 166 (174)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 567888999999999999999998877653
No 80
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=30.21 E-value=78 Score=20.36 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 032010 94 VRELKREQEEIINAPDIEAAECAEILAQY 122 (149)
Q Consensus 94 ~~e~~rE~~ei~~~pe~E~~el~~iy~~~ 122 (149)
..++.+-...++...|.|++|+..-|+.|
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~K 38 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34556666778888999999999999976
No 81
>PRK10061 DNA damage-inducible protein YebG; Provisional
Probab=30.02 E-value=1.1e+02 Score=22.36 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQY--GAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~--Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
+.|...+.+. |++++.++.++=.|++|+|.+...+
T Consensus 36 d~L~~~L~~s~~~ldE~q~E~L~l~LA~nKd~l~~~l 72 (96)
T PRK10061 36 DLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTIL 72 (96)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667654 7889999999999999999988764
No 82
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=29.95 E-value=2.2e+02 Score=23.07 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHhcCc-HHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHhCChHHHHh
Q 032010 103 EIINAP-DIEAAECAEILAQYGAEPH--------------EYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 103 ei~~~p-e~E~~el~~iy~~~Gls~~--------------~A~~v~~~l~~~~~~~~~~ 146 (149)
+.++.| ..|..+...-+..+|++-+ .+..+|..+..||+++-.+
T Consensus 113 ~~~~~~~~eEI~~~~~~L~~~gi~~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l 171 (218)
T TIGR02895 113 EIENENRRLEILEYKKLLKQFGIEFVELVKVSPKHRDTRKKAIKIAKVIVENEELLEYL 171 (218)
T ss_pred HHccccHHHHHHHHHHHHHHcCCcHHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444 5689999999999999644 4667888999999876544
No 83
>PRK14136 recX recombination regulator RecX; Provisional
Probab=29.89 E-value=1.6e+02 Score=25.65 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=31.2
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 102 EEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 102 ~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
..+....+.-..||.+-|+++|++++....|++.|.++.
T Consensus 169 L~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~g 207 (309)
T PRK14136 169 LGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREG 207 (309)
T ss_pred HHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 334556677888999999999999999999999887653
No 84
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.80 E-value=2.1e+02 Score=20.53 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 89 EADHYVRELKREQEEIINAP--DIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 89 e~d~~~~e~~rE~~ei~~~p--e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
-.|....+.+|-.-...+.| ..=.+.|..+++..|+++++...-++.|-..-
T Consensus 23 p~d~~L~eLARL~iRY~gFPGA~diq~DL~kiL~~W~lteeeLf~kTR~I~~~g 76 (90)
T PF11691_consen 23 PTDYNLAELARLRIRYQGFPGARDIQKDLDKILQKWGLTEEELFEKTREIHASG 76 (90)
T ss_pred CCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 55677888888888888998 55578899999999999999988888876543
No 85
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=29.71 E-value=2.8e+02 Score=27.30 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCH
Q 032010 76 VSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEP 126 (149)
Q Consensus 76 iSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~ 126 (149)
+-...-.|.|.+--+ ..+=++++-+....++|..-.+|+.++|++.|+++
T Consensus 592 lPLtiKS~kSmaKMq-~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNP 641 (795)
T PRK01001 592 YPLNAWSIRSMRRMQ-KLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNP 641 (795)
T ss_pred hccHHHHHHHHHHHH-HhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCc
Confidence 334444455443322 33444555555566789889999999999999986
No 86
>PF14163 SieB: Superinfection exclusion protein B
Probab=29.59 E-value=2.4e+02 Score=21.05 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 032010 61 SIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQY 122 (149)
Q Consensus 61 ~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~ 122 (149)
..+++.+++=+++..++.....+..-..++...+ +-+..+.+--+.|+.-+.+.|.+.
T Consensus 37 ~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~----~~~~~l~~Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 37 GLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKK----KIEKKLNSLTPEEKAVLREFYIQG 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHCC
Confidence 5677788888899999888665543322222221 112225555566777777777654
No 87
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=29.55 E-value=2.2e+02 Score=28.19 Aligned_cols=116 Identities=13% Similarity=0.220 Sum_probs=62.1
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCch-----HHHHHH-------HHHHHHHHHHHHhhhhhhhhhccchHH
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPS-----SIILIA-------GIAEVAAGAVSMGLGGYLAAKSEADHY 93 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~-----~~Vlla-------Gla~liAgaiSMa~G~YlS~kse~d~~ 93 (149)
..-.+++|++.|-..||++= +-.|.|... +++..+ .|..++.--+.+--..|=..+..+|+.
T Consensus 325 ~vIaDH~R~~~f~i~DGv~P------sN~grGYvlRrilRRa~r~~~~lg~~~~l~~lv~~~~~~~~~~ypel~~~~~~I 398 (900)
T PRK13902 325 YAIADHTRTLAFMLGDGIVP------SNVGEGYLARLVIRRTLRLLDELGLDVPLSELVDMQIDELKEDYPELKENRDYI 398 (900)
T ss_pred EEEecHHHHHHHHHhCCCcC------CCCCcchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhhhChhHHHhHHHH
Confidence 34578999999999999751 112222111 111111 133344433333333454444444555
Q ss_pred HHHHHHHHHHHhcC---------------cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hCChHHHHhh
Q 032010 94 VRELKREQEEIINA---------------PDIEAAECAEILAQYGAEPHEYEGVVNALK---RNPKHWLDFM 147 (149)
Q Consensus 94 ~~e~~rE~~ei~~~---------------pe~E~~el~~iy~~~Gls~~~A~~v~~~l~---~~~~~~~~~M 147 (149)
...++.|+.....- ..---+++..+|..+|||+|....++++-- .-|+-|-..|
T Consensus 399 ~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~ 470 (900)
T PRK13902 399 LDIVDLEEEKYRETLERGKRIVERLAKKKEEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLV 470 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHH
Confidence 55555544333211 112346788899999999999999886532 2334454444
No 88
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=29.39 E-value=1.8e+02 Score=19.44 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhcCCCchHHHHH
Q 032010 44 TVPFALAAGLSGADVPSSIILI 65 (149)
Q Consensus 44 vt~falvaGvaga~~~~~~Vll 65 (149)
|++.|+++|+++.+ .|+..+.
T Consensus 18 Vt~mAiLSG~gaVs-tpy~~~~ 38 (72)
T PF12537_consen 18 VTLMAILSGFGAVS-TPYYYFS 38 (72)
T ss_pred HHHHHHHhhhhHHc-cHHHHHH
Confidence 57778888887776 5555443
No 89
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.10 E-value=1.3e+02 Score=28.28 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
+..+..+.+.|.+.|++++.++.+.+.+..+
T Consensus 291 ~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~ 321 (559)
T PRK12727 291 SPVRAQALELMDDYGFDAGLTRDVAMQIPAD 321 (559)
T ss_pred ChHHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 3467778899999999999999999988653
No 90
>PLN02900 alanyl-tRNA synthetase
Probab=29.05 E-value=2.8e+02 Score=27.60 Aligned_cols=104 Identities=10% Similarity=0.093 Sum_probs=59.9
Q ss_pred cccchhhhHHHhhcccchHHHHHHHHhhhcCCCch-----HHHHH----H-----HHHHHHHHHHHHhhhhhhhhhccch
Q 032010 26 FTSSEIVRDIIIGVSDGLTVPFALAAGLSGADVPS-----SIILI----A-----GIAEVAAGAVSMGLGGYLAAKSEAD 91 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt~falvaGvaga~~~~-----~~Vll----a-----Gla~liAgaiSMa~G~YlS~kse~d 91 (149)
..-.+++|+++|-..||++= +-.|.+..- +++.. + -|..++.--+.+--..|=..+..++
T Consensus 299 rviaDH~R~~~f~i~DGv~P------sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~ 372 (936)
T PLN02900 299 RVVADHIRTLSFAIADGVVP------SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEK 372 (936)
T ss_pred eeehhhHHHHHHHHhcCCcc------CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHH
Confidence 34578999999999999741 111222110 00000 0 1333444444444455666666667
Q ss_pred HHHHHHHHHHHHHhcCc--------------------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 92 HYVRELKREQEEIINAP--------------------DIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 92 ~~~~e~~rE~~ei~~~p--------------------e~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
..+..+..|+..+..-- .---+....+|..+|||.|..+.++++
T Consensus 373 ~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e 436 (936)
T PLN02900 373 RITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEE 436 (936)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHH
Confidence 77766666654333211 122356678899999999999888864
No 91
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=29.03 E-value=1.9e+02 Score=19.68 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHhhhcCC-CchHHHHHHHHHH-HHHHHHHHhhhhhhhhhccchH
Q 032010 50 AAGLSGAD-VPSSIILIAGIAE-VAAGAVSMGLGGYLAAKSEADH 92 (149)
Q Consensus 50 vaGvaga~-~~~~~VllaGla~-liAgaiSMa~G~YlS~kse~d~ 92 (149)
+..++... .+++.|++....+ .+..+++..+|.++..+-..++
T Consensus 21 t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~ 65 (78)
T PF01169_consen 21 TIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERY 65 (78)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 34445543 3677777666555 6778899999999866554443
No 92
>PRK11677 hypothetical protein; Provisional
Probab=28.98 E-value=2.6e+02 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHHHHHhcCcHHHH
Q 032010 88 SEADHYVRELKREQEEIINAPDIEA 112 (149)
Q Consensus 88 se~d~~~~e~~rE~~ei~~~pe~E~ 112 (149)
.|.|..+.++.+-+.++.+|...-.
T Consensus 36 ~eLe~~k~ele~YkqeV~~HFa~TA 60 (134)
T PRK11677 36 YELEKNKAELEEYRQELVSHFARSA 60 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666677777775433
No 93
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=28.64 E-value=80 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
..+|++-....||++|.++.++++|..+-
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~rl~E~G 349 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRRLTENG 349 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Confidence 46889999999999999999999998774
No 94
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.62 E-value=2.2e+02 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=15.3
Q ss_pred hccchHHHHHHHHHHHHHhcCcHHHHH
Q 032010 87 KSEADHYVRELKREQEEIINAPDIEAA 113 (149)
Q Consensus 87 kse~d~~~~e~~rE~~ei~~~pe~E~~ 113 (149)
+.|.+..+.++.+-+.++..|.+.-.+
T Consensus 31 ~~eL~~~k~el~~yk~~V~~HF~~ta~ 57 (128)
T PF06295_consen 31 EQELEQAKQELEQYKQEVNDHFAQTAE 57 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666677776655333
No 95
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.42 E-value=97 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~ 137 (149)
.-.+.+.+...+.||++++|++++..+.
T Consensus 183 ~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 183 YFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4456788889999999999998877654
No 96
>PRK14135 recX recombination regulator RecX; Provisional
Probab=28.17 E-value=2e+02 Score=23.34 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=9.3
Q ss_pred HHhhcccchHHHHHHH
Q 032010 35 IIIGVSDGLTVPFALA 50 (149)
Q Consensus 35 ~V~G~~DGlvt~falv 50 (149)
.+|+.+-+++.-++|-
T Consensus 22 ~~~~~~~~~~~~~~L~ 37 (263)
T PRK14135 22 YAFSVDEDTLVKFMLK 37 (263)
T ss_pred eEEEeeHHHHHHhcCc
Confidence 4555666666666654
No 97
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=28.05 E-value=34 Score=24.06 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=26.1
Q ss_pred hhhhHHHhhccc--------c-----hHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Q 032010 30 EIVRDIIIGVSD--------G-----LTVPFALAAGLSGADVPSSIILIAGIAEVAA 73 (149)
Q Consensus 30 ~~iR~~V~G~~D--------G-----lvt~falvaGvaga~~~~~~VllaGla~liA 73 (149)
+++|+.+=-+|. + |-.+.|+++|+.++-..|...+++.++++++
T Consensus 20 ~~iK~li~kGNv~Ri~Ikk~~~tll~iPlt~gv~~g~i~~~~aP~la~lg~iaAl~~ 76 (84)
T PF14242_consen 20 DKIKELIKKGNVTRIIIKKDDKTLLDIPLTAGVAAGVIGALLAPVLAALGAIAALVT 76 (84)
T ss_pred HHHHHHHHhcCeEEEEEEcCCeEEEEeeeehHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466666666552 2 1247777778877766666555555555443
No 98
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.00 E-value=1e+02 Score=21.64 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
.++..-+...|||+++|..-.+.|.+=
T Consensus 71 d~~~~~l~~lGl~~~ea~~y~~~l~~G 97 (103)
T PF11181_consen 71 DELRSKLESLGLSEDEAERYEEELDQG 97 (103)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 467778899999999999988887653
No 99
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=27.94 E-value=1.4e+02 Score=20.53 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhC
Q 032010 108 PDIEAAECAEILAQYGAEPHEY-EGVVNALKRN 139 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A-~~v~~~l~~~ 139 (149)
++.-+++..++|.+.|++..+| +.....+.++
T Consensus 10 d~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv~~ 42 (83)
T TIGR02384 10 DEELKKEAYAVFEELGLTPSTAIRMFLKQVIRE 42 (83)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4567788888899999988887 3344554443
No 100
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=27.84 E-value=1.8e+02 Score=23.06 Aligned_cols=51 Identities=4% Similarity=0.043 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 88 SEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 88 se~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
.||+-.+.-+++.+.+-..-+..|++.|..+....-|.+..++..++.+..
T Consensus 54 aQRqQmRdLm~~~r~~~~~~~~~er~amh~LI~ad~FDEaavra~a~kma~ 104 (166)
T PRK10363 54 HQRQQMRDLMQQARHEQPPVNVSEMETMHRLVTAENFDENAVRAQAEKMAQ 104 (166)
T ss_pred HHHHHHHHHHHHHHhcccccCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345544444444443333334679999999999999999999998887764
No 101
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=27.71 E-value=93 Score=21.22 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
---..+++..++...|+++++...+...+-.+.+
T Consensus 25 G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~ 58 (96)
T smart00027 25 GTVTGAQAKPILLKSGLPQTLLAKIWNLADIDND 58 (96)
T ss_pred CeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 3457788888899999999988888877655543
No 102
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=26.73 E-value=2.8e+02 Score=21.61 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Q 032010 71 VAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAP-DIEAAECAEILA 120 (149)
Q Consensus 71 liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~p-e~E~~el~~iy~ 120 (149)
++|=.++++.+.|-..+.-...+-..+..--|.....| +..+++++..++
T Consensus 12 ~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~~~~~~r~~l~ 62 (209)
T PF14023_consen 12 LLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPPDRDEIRALLR 62 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 33444555555555444444444444444445555555 344444444433
No 103
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.56 E-value=1.5e+02 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHhcCcHHHHHHHHHHHHh-------cCCCHHHH
Q 032010 102 EEIINAPDIEAAECAEILAQ-------YGAEPHEY 129 (149)
Q Consensus 102 ~ei~~~pe~E~~el~~iy~~-------~Gls~~~A 129 (149)
.++..-|+.|+++..+-|++ .|.|++++
T Consensus 12 ~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeei 46 (181)
T PF08006_consen 12 KYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEI 46 (181)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHH
Confidence 33456788888888877763 35666653
No 104
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=26.11 E-value=2.9e+02 Score=20.78 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHH
Q 032010 65 IAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQ 101 (149)
Q Consensus 65 laGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~ 101 (149)
+.....+++...++++=.|.+-+..+..|+.++.+..
T Consensus 95 ~~~~~~~l~~~~~~~~r~~~~~~~~~~ry~~~l~~~L 131 (141)
T PF12576_consen 95 LILILSLLSALGGYAFRQYTGYKNNRARYQLLLTKTL 131 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666678999999999999999988887654
No 105
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=26.11 E-value=1.2e+02 Score=28.60 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=38.9
Q ss_pred CCCCCCCccccCCcccchhccccccccchhhhHHHhhcccchHHHHHHHH
Q 032010 2 AASSYTAPEKQKPLLELEEHEEKHFTSSEIVRDIIIGVSDGLTVPFALAA 51 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~e~h~~~~~~iR~~V~G~~DGlvt~falva 51 (149)
|.|-+..||-+|++-.++.-+-.|..+.+.+-++--|+.+-+-+++++.+
T Consensus 381 A~sKL~yPEtEEs~~~ee~~kLe~~~~~~lldaassga~aav~~V~~I~a 430 (602)
T KOG3747|consen 381 ACSKLFYPETEESITKEEDIKLESGDDRNLLDAASSGAVAAVPIVLNIAA 430 (602)
T ss_pred HHhhhcCCccccccccccccccccCCcccHHHHHhhhhHHHHHHHHHHHH
Confidence 56788999999998666666666777778888888888888777777655
No 106
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.73 E-value=1.1e+02 Score=25.58 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=11.5
Q ss_pred HhhcccchHHHHHHHHhhh
Q 032010 36 IIGVSDGLTVPFALAAGLS 54 (149)
Q Consensus 36 V~G~~DGlvt~falvaGva 54 (149)
+--..|-|+++.++|+|+.
T Consensus 58 ~~kIf~wi~~avsvv~~~~ 76 (306)
T PF04888_consen 58 FSKIFGWIGTAVSVVAGAF 76 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344456667777777665
No 107
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=25.19 E-value=2.1e+02 Score=23.73 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
...+.+++.+.+...|++++.++.+.+.+..
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~ 162 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPE 162 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhc
Confidence 3457789999999999999999999999875
No 108
>PRK08055 chorismate mutase; Provisional
Probab=24.96 E-value=3.6e+02 Score=21.51 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=43.0
Q ss_pred hhhhhhhhhccchHHHHHHHHHHHHHh---cCcHHHHHHHHHHHH---hcCCCHHHHHHHHHHHH
Q 032010 79 GLGGYLAAKSEADHYVRELKREQEEII---NAPDIEAAECAEILA---QYGAEPHEYEGVVNALK 137 (149)
Q Consensus 79 a~G~YlS~kse~d~~~~e~~rE~~ei~---~~pe~E~~el~~iy~---~~Gls~~~A~~v~~~l~ 137 (149)
-+++-+..-.||=.+-.++.+-+|+-. .+|+.|++-+...-. +.|++++.++.+-..+.
T Consensus 26 ~~~~Lv~Li~eRl~la~~VA~~K~~~~~PI~Dp~RE~~VL~~v~~~A~~~GLdp~~i~~~F~~~I 90 (181)
T PRK08055 26 SLGALATLINERLSYMKDVAGYKAEHHLPIEDLTQEQKVLAEAEEEAASNGLDPESIKPFIVAQM 90 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH
Confidence 456677777788888888888888754 478888877765544 45899999887666543
No 109
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=24.90 E-value=1.2e+02 Score=25.26 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
+||+.++-...++++-|++++.+.+..+.|.+
T Consensus 72 ~~Ee~re~a~~ll~~eGv~e~vi~ka~e~i~k 103 (239)
T COG1424 72 CPEEARENAQKLLQEEGVTEQVINKAYEIIKK 103 (239)
T ss_pred CHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 68889999999999999999999988887765
No 110
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=2.4e+02 Score=19.45 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHH--HHHHHHH
Q 032010 97 LKREQEEIINAPDIEAAECAEILAQYGAEPHEY--EGVVNAL 136 (149)
Q Consensus 97 ~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A--~~v~~~l 136 (149)
++.-+.++.+||.--.+.++..|.+.|--+.++ +++-+.+
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344567788999888899999999999866554 4454443
No 111
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=24.74 E-value=4.7e+02 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCH
Q 032010 95 RELKREQEEIINAPDIEAAECAEILAQYGAEP 126 (149)
Q Consensus 95 ~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~ 126 (149)
-++++-+....++++.-.+|+.++|++.|+++
T Consensus 76 Pe~~~iq~kyk~~~~~~~~e~~~Lykk~ginp 107 (329)
T PRK01315 76 PKMKKIQEKYKGDRERMSQEMMKLYKETGTNP 107 (329)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCc
Confidence 34444455566778889999999999999987
No 112
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.62 E-value=1.2e+02 Score=24.36 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
-.+++.+..++.|+++++|.+++..+
T Consensus 171 ~~~~~~~~~~~~Gl~~~~a~~~~~~~ 196 (258)
T PRK06476 171 ILETATGWLEEQGLKRQKARAYLAPL 196 (258)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56788889999999999998877643
No 113
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=24.52 E-value=1e+02 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHH
Q 032010 110 IEAAECAEILAQY---GAEPHEYEGVVNA 135 (149)
Q Consensus 110 ~E~~el~~iy~~~---Gls~~~A~~v~~~ 135 (149)
.-++.|.+-|... ||++++|+=.++.
T Consensus 19 ~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 19 MSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred CCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 4567888888875 9999999876654
No 114
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.38 E-value=2.4e+02 Score=19.25 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 93 YVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 93 ~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.+.-+++=...+.+-...|+..+.+-|.+.|++.++.+.+.+.
T Consensus 15 ~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 15 PEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 3444555566778888899999999999999999999988764
No 115
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.34 E-value=90 Score=23.38 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
...=++.|+.|||+++|..++-......
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 3444678999999999998877765443
No 116
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.34 E-value=2.3e+02 Score=19.08 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=21.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCHHHH
Q 032010 101 QEEIINAPDIEAAECAEILAQYGAEPHEY 129 (149)
Q Consensus 101 ~~ei~~~pe~E~~el~~iy~~~Gls~~~A 129 (149)
+.++..||.--.+-++..|.+.|-.+.++
T Consensus 23 ~k~l~~NPpine~mir~M~~QMG~kpSek 51 (64)
T PF03672_consen 23 EKQLKENPPINEKMIRAMMMQMGRKPSEK 51 (64)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhCCCccHH
Confidence 34456788777788889999988766554
No 117
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=23.74 E-value=1.4e+02 Score=23.16 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=20.1
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCHH
Q 032010 104 IINAPDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 104 i~~~pe~E~~el~~iy~~~Gls~~ 127 (149)
..+++....+|+.++|+++|+++=
T Consensus 46 ~~~~~~~~~~~~~~l~k~~~~~p~ 69 (198)
T PF02096_consen 46 YKEDQQKMQQEMQKLYKKHGVNPL 69 (198)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCcH
Confidence 455677889999999999999875
No 118
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=23.69 E-value=6.4e+02 Score=23.98 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=49.6
Q ss_pred chHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcC--c--HHHHHHHHH
Q 032010 42 GLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINA--P--DIEAAECAE 117 (149)
Q Consensus 42 Glvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~--p--e~E~~el~~ 117 (149)
++++..++++.+.-.| ....+...|++-++++-|.=+.+.+- +..... .|-.++- | +.=-.-+.+
T Consensus 323 ~vitaVsvvAAvfTGG-ASLAlAaVGlAL~aaDeI~qa~TG~S-------Fm~eam---~PiMe~VvkPLme~is~~iT~ 391 (593)
T PRK15374 323 ALLTIVSVVAAVFTGG-ASLALAAVGLAVMVADEIVKAATGVS-------FIQQAL---NPIMEHVLKPLMELIGKAITK 391 (593)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhCcc-------HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888666665 35666666777677776655554431 222111 1111111 1 222245567
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 032010 118 ILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 118 iy~~~Gls~~~A~~v~~~l 136 (149)
++...|++++.|+.+..++
T Consensus 392 ~L~~~GVdke~Ae~iGsI~ 410 (593)
T PRK15374 392 ALEGLGVDKKTAEMAGSIV 410 (593)
T ss_pred HHHHcCCCHHHHHHHHHHH
Confidence 8888999999999887764
No 119
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=23.47 E-value=1.7e+02 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=30.2
Q ss_pred cccchHHHHHH--HHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 032010 39 VSDGLTVPFAL--AAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAK 87 (149)
Q Consensus 39 ~~DGlvt~fal--vaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~k 87 (149)
-|||+.|++++ +-+..-.+.+...+++.++...+.+.+.--+..|+.-|
T Consensus 293 ~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 293 YSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999775554 33333356677777777777766665555555566544
No 120
>cd08817 CARD_RIG-I_2 Caspase activation and recruitment domain found in RIG-I, second repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), second repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction do
Probab=23.19 E-value=1.9e+02 Score=20.74 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhCChHHHHhh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNA-LKRNPKHWLDFM 147 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~-l~~~~~~~~~~M 147 (149)
-+..|-+|+.+|+..+|.-- -|+++++- +..+++-|-+.+
T Consensus 32 L~~~EceeI~qi~~~kg~ma-~aeKl~ecLlRSDKenWpK~L 72 (88)
T cd08817 32 LINRECEEIQQIESQKGPMA-GAEKLVECLLRSDKENWPKTL 72 (88)
T ss_pred HhHHHHHHHHHHHhcCCchH-HHHHHHHHHHHhcccCcHHHH
Confidence 35788899999999999754 44555554 567888887754
No 121
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=23.11 E-value=3.8e+02 Score=21.93 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHhCChHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEP--------------HEYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~--------------~~A~~v~~~l~~~~~~~~~~ 146 (149)
....|..+...-+..+|++- +.+..||..++.||+.+-.+
T Consensus 129 ~~~~ei~~~~~~L~~~gi~~~dL~~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l 182 (237)
T PRK08311 129 ERREEIEEFKKELKEFGITFEDLVKESPKHRDTRENAIKIAKTIAENEELLEKL 182 (237)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHhhcCCCCHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 35677888888999999974 35677899999999876544
No 122
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=23.11 E-value=1.5e+02 Score=20.29 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHHHHHh-c-CCCHHHHHHHHHHHHh
Q 032010 112 AAECAEILAQ-Y-GAEPHEYEGVVNALKR 138 (149)
Q Consensus 112 ~~el~~iy~~-~-Gls~~~A~~v~~~l~~ 138 (149)
+.|+++.+.+ . |++..++..+++.+..
T Consensus 3 k~eli~~ia~~~~~~s~~~~~~vv~~~~~ 31 (94)
T PRK00199 3 KSELIERLAARNPHLSAKDVENAVKEILE 31 (94)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4677776664 3 7999999998887653
No 123
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=22.98 E-value=1e+02 Score=19.45 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCChHHHHhh
Q 032010 127 HEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 127 ~~A~~v~~~l~~~~~~~~~~M 147 (149)
.+-....+.|..|+|+|++++
T Consensus 21 KEf~DaLeiL~sNkdlflk~L 41 (46)
T PF12552_consen 21 KEFLDALEILSSNKDLFLKFL 41 (46)
T ss_pred HHHHHHHHHHHhCHHHHHHHH
Confidence 455667788999999999886
No 124
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=22.93 E-value=2.2e+02 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCCccccCCcccchhccccccccchhhhHHHhhcccchHHHHHHHH
Q 032010 6 YTAPEKQKPLLELEEHEEKHFTSSEIVRDIIIGVSDGLTVPFALAA 51 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~e~h~~~~~~iR~~V~G~~DGlvt~falva 51 (149)
+.-||.++|..+.+...+ .....+.+-++.=|+.||+-..+.+.+
T Consensus 19 i~~Pet~~~~~~~~~~~~-~~~~~n~~~A~~~Ga~~g~~la~~I~a 63 (210)
T PF07662_consen 19 IMYPETEESETKGEEEEE-KSEPQNFFDAISNGALDGLKLALNIGA 63 (210)
T ss_dssp HHS---S----------------SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCcccchhccc-ccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777654433333 445667899999999999965555433
No 125
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=22.88 E-value=45 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.4
Q ss_pred chhhhHHHhhcccchHHHHHH
Q 032010 29 SEIVRDIIIGVSDGLTVPFAL 49 (149)
Q Consensus 29 ~~~iR~~V~G~~DGlvt~fal 49 (149)
-.+++..|||...||.|++-.
T Consensus 39 e~Fi~vsIlGFlEGiLttLk~ 59 (97)
T PF11505_consen 39 EEFIKVSILGFLEGILTTLKL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999888754
No 126
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=22.86 E-value=2.6e+02 Score=26.80 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=36.5
Q ss_pred hccchHHHHHHHH-HHHHHhc--CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 87 KSEADHYVRELKR-EQEEIIN--APDIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 87 kse~d~~~~e~~r-E~~ei~~--~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
+.||+++.+|.-+ -+.|+-. +.+.|.+++.+-+.+.++|++....+-++|.+-
T Consensus 221 ~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~ 276 (775)
T TIGR00763 221 KTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKL 276 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5567776554432 3344433 345788999999999999998888887777643
No 127
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=22.83 E-value=41 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.4
Q ss_pred HhhcccchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhh
Q 032010 36 IIGVSDGLTVPFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLG 81 (149)
Q Consensus 36 V~G~~DGlvt~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G 81 (149)
-+|++-.|+.+|.++.|+.|+-..+...-..++-.-+|-++.||..
T Consensus 138 ~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~~i~~~~A~GlalG~a 183 (226)
T TIGR00659 138 MIGGIPAVTAVFVILTGLLGTVFGPMVLRYFRVKNEIARGLLLGTS 183 (226)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhHH
Confidence 3567777788888899999888777777777776666766666654
No 128
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=22.45 E-value=65 Score=21.10 Aligned_cols=41 Identities=17% Similarity=0.435 Sum_probs=26.2
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 101 QEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 101 ~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+.-+..||+ -+-.+++..|-+... +++.|..||+.|+++|.
T Consensus 14 R~~vq~NP~----lL~~lLqql~~~nP~---l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 14 RQLVQQNPQ----LLPPLLQQLGQSNPQ---LLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp HHHHHC-GG----GHHHHHHHHHCCSHH---HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHCHH----HHHHHHHHHhccCHH---HHHHHHHCHHHHHHHHc
Confidence 344667885 344455555554443 45568999999999885
No 129
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=22.31 E-value=1.6e+02 Score=19.53 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=18.1
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHH
Q 032010 113 AECAEILA-QYGAEPHEYEGVVNALK 137 (149)
Q Consensus 113 ~el~~iy~-~~Gls~~~A~~v~~~l~ 137 (149)
++|++.+. ..|++..++..+.+.+.
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~ 29 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALF 29 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45555554 55999999999888765
No 130
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=22.27 E-value=1.5e+02 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNP 140 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~ 140 (149)
...+.-.+||..-|.++|++++....|.+.+..+.
T Consensus 31 s~R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~ 65 (174)
T COG2137 31 SRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEG 65 (174)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Confidence 34456667888888888888888888887776543
No 131
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=22.20 E-value=5.5e+02 Score=22.66 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHhcCCCHH
Q 032010 108 PDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~ 127 (149)
+..-.+|+.++|++.|+++=
T Consensus 186 ~~k~q~e~~~Lykk~ginP~ 205 (357)
T PRK02201 186 KQRKQQEIQELYKKHNISPF 205 (357)
T ss_pred HHHHHHHHHHHHHHcCCCcH
Confidence 45577999999999999985
No 132
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.05 E-value=2.4e+02 Score=18.53 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=18.8
Q ss_pred HHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHH
Q 032010 75 AVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAE 114 (149)
Q Consensus 75 aiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~e 114 (149)
++.-++|-+++.++-++..+.-. +...++.+++..-.++
T Consensus 10 ~~Ga~~glL~aP~sG~e~R~~l~-~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 10 AAGAAAGLLFAPKSGKETREKLK-DKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33345555666666666654433 3333444444333333
No 133
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.80 E-value=2.6e+02 Score=21.22 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHH
Q 032010 108 PDIEAAECAEILAQYGAEPHEYE 130 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~ 130 (149)
...-++++.+....+||+.++..
T Consensus 54 r~~~l~~i~~~~~~~Git~eeL~ 76 (134)
T PRK10328 54 RQEKINTWLELMKADGINPEELL 76 (134)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHh
Confidence 34567788888999999999884
No 134
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=21.44 E-value=2.8e+02 Score=19.02 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 032010 60 SSIILIAGIAEVAAGAVSMGLGGYLAA 86 (149)
Q Consensus 60 ~~~VllaGla~liAgaiSMa~G~YlS~ 86 (149)
...++++.++..+++.++-.+|.+..-
T Consensus 17 ~~~~~~~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 17 WLGFLIATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457777778888888888899988875
No 135
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=1e+02 Score=26.17 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 61 SIILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 61 ~~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..+++.++.++..|+.+|.+.-|+..+.+ |.++ +..+.++-.-.-..+..+-++-+.++-=++.+++.+-..+
T Consensus 186 a~vilG~~lG~tv~~~l~l~q~a~~k~vn-E~~~--l~~~dyk~~l~vts~~~~aie~L~q~e~~e~~~~~~kal~ 258 (270)
T KOG4608|consen 186 AGVILGALLGTTVGGLLMLFQKASGKTVN-ERKQ--LKLEDYKGRLQVTSHLPEAIESLLQEEEPENDAKKIKALL 258 (270)
T ss_pred hcceeehhhcchHHHHHHHHHHHhCCcHH-HHHH--HHHHhhccccccccchHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34567777778888888888888765543 2221 3333333333333333333333444333444555544333
No 136
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=21.06 E-value=1.5e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVV 133 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~ 133 (149)
+..++|+..|-++++++=|+|+.+=
T Consensus 84 ~~ak~EI~~IM~~~~v~FDeARliy 108 (128)
T PF09435_consen 84 DAAKREIRRIMKRRRVNFDEARLIY 108 (128)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5668999999999999999998853
No 137
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=20.96 E-value=2.2e+02 Score=25.94 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=34.4
Q ss_pred hcccchHHHHH--HHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 032010 38 GVSDGLTVPFA--LAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEA 90 (149)
Q Consensus 38 G~~DGlvt~fa--lvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~ 90 (149)
=-+||+.++++ .+-|.+-.+.+...+++.|++.-+-+++.-=++.||..|-+-
T Consensus 263 ~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~ 317 (438)
T COG2270 263 FYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGS 317 (438)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35899987555 444555566777777777777655555555555588776543
No 138
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=20.93 E-value=1.3e+02 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCHH
Q 032010 97 LKREQEEIINAPDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 97 ~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~ 127 (149)
+++-+.+..+++..-.+|+.++|+++|+++=
T Consensus 68 l~~iq~kyk~~~~~~~~e~~~Lyk~~gvnP~ 98 (304)
T PRK03449 68 IKALQKKYGNDRQKMALEMQKLQKEHGFNPI 98 (304)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCCch
Confidence 3333344456778888999999999999863
No 139
>PRK14134 recX recombination regulator RecX; Provisional
Probab=20.88 E-value=1.7e+02 Score=24.68 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=11.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCHH
Q 032010 106 NAPDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~ 127 (149)
..|+..++++.+-+...|+=.|
T Consensus 89 ~~~~~~Ie~vI~~L~e~~yldD 110 (283)
T PRK14134 89 EYDEDAVNRVIRFLKEYNFIDD 110 (283)
T ss_pred CCCHHHHHHHHHHHHHCCCCCH
Confidence 4445555555555555555444
No 140
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=20.78 E-value=73 Score=22.66 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
..+++.+.+...|+++.++-++++.
T Consensus 58 ~~~~l~~~L~~~~L~~~E~~qi~Nl 82 (117)
T PF03874_consen 58 SIKELREELKKFGLTEFEILQIINL 82 (117)
T ss_dssp HHHHHHHHHTTSTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHhcC
Confidence 3444444444444444444444443
No 141
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.73 E-value=1.7e+02 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
|....--|..+|..+ |++++..+|+..|.+
T Consensus 21 P~~Dy~PLlALL~r~-Ltd~ev~~Va~~L~~ 50 (96)
T PF11829_consen 21 PPTDYVPLLALLRRR-LTDDEVAEVAAELAA 50 (96)
T ss_dssp -HHHHHHHHHHHTTT-S-HHHHHHHHHHHHH
T ss_pred CCCccHHHHHHhccc-CCHHHHHHHHHHHHh
Confidence 456667778888877 888888888888864
No 142
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.61 E-value=2.3e+02 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
+...+++.+.|...|++.+.++++++.+.++
T Consensus 195 ~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~ 225 (484)
T PRK06995 195 DPVRAALLKHLLAAGFSAQLVRMLVDNLPEG 225 (484)
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 4556889999999999999999999988654
No 143
>PF14068 YuiB: Putative membrane protein
Probab=20.46 E-value=1.6e+02 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 032010 48 ALAAGLSGADVPSSIILIAGIAEVAAGAVSM 78 (149)
Q Consensus 48 alvaGvaga~~~~~~VllaGla~liAgaiSM 78 (149)
++-..+.+.......++.+|+++++..++.+
T Consensus 61 ~l~~~l~~l~~~Di~il~~Gl~GAi~SG~tI 91 (102)
T PF14068_consen 61 SLGENLVSLALADILILSSGLAGAIVSGITI 91 (102)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555565567889999999988888765
No 144
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=20.21 E-value=1.8e+02 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
.+++...|...|+++.+|..+.+.+.++
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~ 176 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKE 176 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999999763
No 145
>PRK01318 membrane protein insertase; Provisional
Probab=20.05 E-value=4.3e+02 Score=24.44 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=31.0
Q ss_pred HHHhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCH
Q 032010 76 VSMGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEP 126 (149)
Q Consensus 76 iSMa~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~ 126 (149)
+-..+-.|.|..-.+.. +-++++-+....++|..-.+|+.++|++.|+++
T Consensus 339 ~Pl~~~s~~s~~km~~l-qP~~~~i~~kyk~d~~k~~~e~~~LYKk~~vnP 388 (521)
T PRK01318 339 FPLTYKSYVSMAKMKVL-QPKMQELKEKYKDDPQKMQQEMMELYKKEKVNP 388 (521)
T ss_pred hhhHHHHHHHHHHHHHh-hHHHHHHHHHhHhhHHHHHHHHHHHHHHcCCCc
Confidence 44444445444333322 233333344456788888999999999999986
No 146
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=20.05 E-value=6.3e+02 Score=22.49 Aligned_cols=77 Identities=9% Similarity=-0.031 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHH------------------------------HHHHhcCcHH-
Q 032010 62 IILIAGIAEVAAGAVSMGLGGYLAAKSEADHYVRELKRE------------------------------QEEIINAPDI- 110 (149)
Q Consensus 62 ~VllaGla~liAgaiSMa~G~YlS~kse~d~~~~e~~rE------------------------------~~ei~~~pe~- 110 (149)
.-.+-|++..+.|-++...........|||.-..-..+. +..++.+...
T Consensus 285 ~E~i~~~a~~~~g~~~~~~~~~~~~~~Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~ 364 (436)
T cd03302 285 SERCCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFM 364 (436)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChH
Confidence 455667777777777666655655556665443332221 1222222221
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
--+.+...+.++|++..+|..++.+++.
T Consensus 365 ~se~~~~~L~~~g~~~~~Ah~~v~~~~~ 392 (436)
T cd03302 365 ATENIIMAAVKAGGDRQDAHERIRVLSH 392 (436)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2234777788889999999999887763
No 147
>PHA00439 exonuclease
Probab=20.04 E-value=1.2e+02 Score=26.03 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHH---HHHHHHHhCC
Q 032010 110 IEAAECAEILAQYGAEPHEYE---GVVNALKRNP 140 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~---~v~~~l~~~~ 140 (149)
.-..-|+.+|.+.|+++++|. ++|++|....
T Consensus 240 ~~w~~~v~~~~k~g~~e~~~~~q~~~ari~r~~d 273 (286)
T PHA00439 240 TLWDCIVTLGAKAGMTEEDAIKQAQMARILRAED 273 (286)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccc
Confidence 447889999999999999994 4777776543
Done!