Query 032010
Match_columns 149
No_of_seqs 106 out of 908
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g3q_A Protein YBL047C; endocy 76.8 4.2 0.00014 23.6 4.2 35 114-148 6-40 (43)
2 2knc_B Integrin beta-3; transm 75.5 3.9 0.00013 27.5 4.2 25 84-108 38-62 (79)
3 1z96_A DNA-damage, UBA-domain 73.1 3.8 0.00013 23.0 3.2 35 113-147 5-39 (40)
4 3e3v_A Regulatory protein RECX 72.8 15 0.00052 27.4 7.5 34 108-141 135-168 (177)
5 2knz_A Ubiquilin-4; cytoplasm, 63.3 16 0.00054 22.3 4.8 42 107-148 6-48 (53)
6 1ify_A HHR23A, UV excision rep 62.7 14 0.00047 22.2 4.4 38 111-148 7-44 (49)
7 3clq_A Uncharacterized protein 62.6 7.9 0.00027 33.7 4.4 36 113-148 203-238 (421)
8 1vg5_A RSGI RUH-014, rhomboid 62.0 11 0.00039 24.8 4.2 37 112-148 29-65 (73)
9 1wji_A Tudor domain containing 59.8 10 0.00035 24.1 3.6 36 113-148 10-45 (63)
10 2bzb_A Conserved domain protei 58.3 8.1 0.00028 24.8 2.9 35 102-136 4-38 (62)
11 2c0s_A Conserved domain protei 58.1 11 0.00037 24.4 3.4 35 102-136 4-38 (64)
12 2dak_A Ubiquitin carboxyl-term 57.6 15 0.0005 23.1 4.0 35 114-148 11-45 (63)
13 1wj7_A Hypothetical protein (R 54.9 34 0.0012 24.2 5.9 51 96-146 23-74 (104)
14 2jy5_A Ubiquilin-1; UBA, alter 50.5 16 0.00056 22.1 3.3 41 108-148 8-49 (52)
15 2bwb_A Ubiquitin-like protein 50.3 22 0.00077 21.0 3.8 42 107-148 2-44 (46)
16 2dkl_A Trinucleotide repeat co 48.6 26 0.00091 23.5 4.4 36 113-148 22-57 (85)
17 1wtj_A Ureidoglycolate dehydro 47.8 23 0.00078 29.6 4.8 33 106-138 13-45 (343)
18 3uoe_A Dehydrogenase; structur 47.0 24 0.00081 29.8 4.8 32 107-138 27-58 (357)
19 3i0p_A Malate dehydrogenase; a 46.6 24 0.00082 29.7 4.8 32 107-138 10-41 (365)
20 1v9n_A Malate dehydrogenase; r 46.0 25 0.00085 29.6 4.8 32 107-138 15-46 (360)
21 1z2i_A Malate dehydrogenase; s 45.6 26 0.00087 29.5 4.8 33 106-138 12-44 (358)
22 4ae4_A Ubiquitin-associated pr 43.1 35 0.0012 24.2 4.6 37 111-147 7-43 (118)
23 2ekk_A UBA domain from E3 ubiq 42.6 20 0.00068 21.0 2.7 34 114-148 11-44 (47)
24 2g8y_A Malate/L-lactate dehydr 42.5 26 0.0009 29.8 4.4 32 107-138 30-61 (385)
25 3lay_A Zinc resistance-associa 42.4 42 0.0014 25.5 5.1 61 82-142 64-128 (175)
26 3d0w_A YFLH protein; GRAM-posi 41.8 38 0.0013 24.0 4.4 42 78-121 58-99 (104)
27 1ixs_A Holliday junction DNA h 39.8 50 0.0017 20.7 4.4 27 111-137 16-42 (62)
28 1c07_A Protein (epidermal grow 39.5 16 0.00055 23.8 2.1 40 102-141 17-58 (95)
29 3dfg_A Xcrecx, regulatory prot 39.3 38 0.0013 24.8 4.4 26 113-138 35-60 (162)
30 1whc_A RSGI RUH-027, UBA/UBX 3 38.9 26 0.0009 22.1 3.0 35 114-148 11-46 (64)
31 1fi6_A EH domain protein REPS1 37.7 16 0.00054 23.6 1.8 31 111-141 27-57 (92)
32 2dag_A Ubiquitin carboxyl-term 37.1 42 0.0014 21.8 3.8 36 113-148 10-46 (74)
33 3k9o_A Ubiquitin-conjugating e 36.2 89 0.0031 23.5 6.2 59 89-147 138-198 (201)
34 1owf_B IHF-beta, integration H 35.9 42 0.0014 22.1 3.8 27 112-138 3-31 (94)
35 3d5l_A Regulatory protein RECX 35.9 54 0.0019 25.2 5.0 29 108-136 178-206 (221)
36 1yfs_A Alanyl-tRNA synthetase; 35.3 1.4E+02 0.0049 26.1 8.0 103 26-135 268-404 (465)
37 1eh2_A EPS15; calcium binding, 34.7 23 0.00078 24.1 2.3 32 110-141 31-62 (106)
38 1wiv_A UBP14, ubiquitin-specif 34.1 40 0.0014 21.8 3.4 35 113-147 30-64 (73)
39 1veg_A NEDD8 ultimate buster-1 33.5 41 0.0014 22.7 3.4 36 113-148 30-65 (83)
40 2pmy_A RAS and EF-hand domain- 32.8 27 0.00093 22.0 2.4 32 110-141 44-75 (91)
41 2dai_A Ubadc1, ubiquitin assoc 32.8 42 0.0014 22.4 3.4 36 113-148 30-65 (83)
42 3d5l_A Regulatory protein RECX 32.6 52 0.0018 25.3 4.4 21 107-127 90-110 (221)
43 1wr1_B Ubiquitin-like protein 32.4 47 0.0016 20.7 3.4 42 107-148 12-54 (58)
44 1qjt_A EH1, epidermal growth f 30.6 23 0.00079 23.4 1.8 31 111-141 29-59 (99)
45 3erm_A Uncharacterized conserv 30.2 71 0.0024 22.0 4.2 35 113-147 37-73 (91)
46 1vek_A UBP14, ubiquitin-specif 30.2 49 0.0017 22.0 3.3 36 113-148 30-66 (84)
47 2cmp_A G1P, terminase small su 29.8 27 0.00093 22.3 1.9 28 116-143 28-55 (63)
48 1f3m_A Serine/threonine-protei 29.7 52 0.0018 21.8 3.4 28 113-147 32-59 (80)
49 3c1d_A Protein ORAA, regulator 29.4 73 0.0025 23.0 4.5 28 109-136 130-157 (159)
50 1k8u_A S100A6, calcyclin, CACY 29.3 44 0.0015 20.4 2.9 46 96-141 11-65 (90)
51 2cpw_A CBL-interacting protein 28.4 41 0.0014 21.2 2.6 35 114-148 21-56 (64)
52 1dv0_A DNA repair protein HHR2 28.3 14 0.00049 22.0 0.3 35 114-148 6-40 (47)
53 1sfu_A 34L protein; protein/Z- 27.9 29 0.001 23.1 1.8 50 88-141 9-58 (75)
54 2o97_B NS1, HU-1, DNA-binding 26.8 86 0.003 20.4 4.1 26 112-137 3-29 (90)
55 3dfg_A Xcrecx, regulatory prot 25.6 64 0.0022 23.5 3.6 26 109-134 132-157 (162)
56 3ff5_A PEX14P, peroxisomal bio 24.9 74 0.0025 19.8 3.2 21 113-133 31-51 (54)
57 3e3v_A Regulatory protein RECX 24.5 38 0.0013 25.2 2.1 32 108-139 31-62 (177)
58 2juj_A E3 ubiquitin-protein li 24.5 1.4E+02 0.0047 18.8 4.5 35 111-145 6-40 (56)
59 2e8e_A Hypothetical protein AQ 24.4 70 0.0024 22.0 3.5 28 55-82 29-56 (132)
60 1p71_A DNA-binding protein HU; 24.2 91 0.0031 20.5 3.9 27 112-138 3-30 (94)
61 1k2h_A S100A1, S-100 protein, 24.1 61 0.0021 19.9 2.9 31 111-141 29-66 (93)
62 2jq6_A EH domain-containing pr 24.1 40 0.0014 24.3 2.2 32 110-141 67-98 (139)
63 1mul_A NS2, HU-2, DNA binding 24.0 93 0.0032 20.2 3.9 26 112-137 3-29 (90)
64 2dah_A Ubiquilin-3; UBA domain 23.8 34 0.0012 20.9 1.5 40 108-147 5-45 (54)
65 1b8z_A Protein (histonelike pr 23.6 96 0.0033 20.1 3.9 26 113-138 4-30 (90)
66 2crn_A Ubash3A protein; compac 23.1 1E+02 0.0034 19.4 3.7 34 115-148 12-46 (64)
67 3nr7_A DNA-binding protein H-N 22.8 1.8E+02 0.0061 19.5 6.0 24 108-131 57-80 (86)
68 2qsf_X RAD23, UV excision repa 22.3 1E+02 0.0036 23.3 4.3 33 116-148 134-166 (171)
69 3c4i_A DNA-binding protein HU 22.3 1E+02 0.0035 20.5 3.9 27 112-138 3-30 (99)
70 3hy0_A Alanyl-tRNA synthetase; 22.0 3.9E+02 0.013 23.2 8.5 100 26-135 281-414 (441)
71 1go3_F DNA-directed RNA polyme 21.7 91 0.0031 21.5 3.6 36 106-141 46-81 (107)
72 2hjm_A Hypothetical protein PF 21.5 32 0.0011 24.2 1.1 21 29-49 45-65 (103)
73 2lbc_A Ubiquitin carboxyl-term 21.5 1.1E+02 0.0036 21.4 3.9 36 113-148 79-114 (126)
74 2w84_A Peroxisomal membrane pr 21.2 90 0.0031 20.5 3.2 24 113-136 36-59 (70)
75 2zt9_E Cytochrome B6-F complex 21.1 1.2E+02 0.0041 16.9 3.3 24 65-88 4-27 (31)
76 2d9s_A CBL E3 ubiquitin protei 21.0 85 0.0029 19.5 2.9 32 116-147 13-44 (53)
77 2kgr_A Intersectin-1; structur 20.7 51 0.0018 22.0 2.0 32 110-141 31-62 (111)
78 1wgn_A UBAP1, ubiquitin associ 20.6 92 0.0032 20.1 3.1 33 113-145 20-52 (63)
79 1nye_A Osmotically inducible p 20.5 99 0.0034 22.5 3.7 29 54-82 61-89 (162)
80 3rhi_A DNA-binding protein HU; 20.2 81 0.0028 20.8 2.9 26 112-137 6-32 (93)
81 3a9f_A Cytochrome C; alpha hel 20.2 71 0.0024 21.5 2.7 27 112-139 65-91 (92)
82 1lql_A OSMC, osmotical inducib 20.1 1.1E+02 0.0038 22.2 4.0 29 54-82 60-88 (166)
No 1
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=76.79 E-value=4.2 Score=23.58 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+.++-+...||+++.|......-..|.+..+++++
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45777888999999999988877778888887765
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.45 E-value=3.9 Score=27.45 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=17.5
Q ss_pred hhhhccchHHHHHHHHHHHHHhcCc
Q 032010 84 LAAKSEADHYVRELKREQEEIINAP 108 (149)
Q Consensus 84 lS~kse~d~~~~e~~rE~~ei~~~p 108 (149)
+.-+-|-.-++.|+++++|+-.+||
T Consensus 38 i~DrrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 38 IHDRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHhcccccCCCC
Confidence 3345566666778888888877777
No 3
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=73.11 E-value=3.8 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
++.++-+...|++++.|+.....-..|.+..++.+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34566677789999999887776666677666654
No 4
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=72.77 E-value=15 Score=27.43 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
|...++.+...+..+||+.+.+..+.+.+..+|+
T Consensus 135 ~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 135 YRNKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 4567889999999999999999999999887775
No 5
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=63.26 E-value=16 Score=22.27 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCChHHHHhhh
Q 032010 107 APDIEAAECAEILAQYGA-EPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gl-s~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
.|+..-++-++.+...|| +++.+......-.-|.+..++++.
T Consensus 6 ~pe~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 6 MPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp CTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467777888899999999 777777777766667777766653
No 6
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.66 E-value=14 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+-++.++-+...||+++.|+...+.-.-|.+..+++++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566788899999999999988887778888877654
No 7
>3clq_A Uncharacterized protein; APC29596.3, conserved protein of unknown function, enterococ faecalis V583, structural genomics, PSI-2; 2.50A {Enterococcus faecalis}
Probab=62.55 E-value=7.9 Score=33.66 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+||.-.+.+-++++++..+|.+-|.+|+.+|++++|
T Consensus 203 ~el~p~i~~~~~~~~~~~~v~~fl~~nd~FFLnl~M 238 (421)
T 3clq_A 203 QALTPYMVQTDFSREQLKEVFEFLGSSDYFSGPTWM 238 (421)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHHHHTSCTTTTHHHHH
T ss_pred HHHhHHHhccCCChHHHHHHHHHHhcCCcccHHHHH
Confidence 445555667899999999999999999999999998
No 8
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=62.04 E-value=11 Score=24.80 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
.++.++.+...||+++.|....+.-.-|.+.-+++++
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556777889999999999998888888888888775
No 9
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.76 E-value=10 Score=24.13 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++.++-+...||+++.|+.....-..|.+..+++++
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345677888999999998877776667777777654
No 10
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=58.29 E-value=8.1 Score=24.80 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 102 EEIINAPDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 102 ~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..+...-|..|++|..+-..+||+.+.+-.+.++|
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeL 38 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDL 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556668889999999999999999988887766
No 11
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=58.05 E-value=11 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 102 EEIINAPDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 102 ~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..+...-|..|++|..+-..+||+.+.+-.+.++|
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeL 38 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQEL 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556667889999999999999999988877765
No 12
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.55 E-value=15 Score=23.09 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+.++-+...||+++.|+.....-..|.+..++.++
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45566777899999999888777677877777654
No 13
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=54.87 E-value=34 Score=24.15 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhCChHHHHh
Q 032010 96 ELKREQEEIINAPDIEAAECAEILAQY-GAEPHEYEGVVNALKRNPKHWLDF 146 (149)
Q Consensus 96 e~~rE~~ei~~~pe~E~~el~~iy~~~-Gls~~~A~~v~~~l~~~~~~~~~~ 146 (149)
+.-|-.+.|.+..+.+.++-+..+... |+++++|+.....---+-+..+++
T Consensus 23 eQ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~ 74 (104)
T 1wj7_A 23 EQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINV 74 (104)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333444445555555667777888888 999999988776544444444433
No 14
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.52 E-value=16 Score=22.12 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCChHHHHhhh
Q 032010 108 PDIEAAECAEILAQYGA-EPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gl-s~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
|+.+-++-++-+...|| +++.+......-.-|.+.-++.+.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555677888999999 777777776666667777776654
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=50.26 E-value=22 Score=21.04 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHhCChHHHHhhh
Q 032010 107 APDIEAAECAEILAQYGAEPHE-YEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~-A~~v~~~l~~~~~~~~~~Mm 148 (149)
.|+..-++-.+-+...||++.+ +......-.-|.+..++.+.
T Consensus 2 ~p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 2 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3667777788889999997655 46666666677777777654
No 16
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.57 E-value=26 Score=23.54 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++.++-|...||+++.|+.....-..+.+..+++++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~ 57 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALL 57 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 667788888999999998877554456666665543
No 17
>1wtj_A Ureidoglycolate dehydrogenase; NADPH dependent enzyme, oxidoreductase; 1.55A {Pseudomonas syringae PV} PDB: 2cwf_A* 2cwh_A*
Probab=47.82 E-value=23 Score=29.61 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=28.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
-.+++-++-+.++|++.|+++++|+.+++.|..
T Consensus 13 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 45 (343)
T 1wtj_A 13 VSYPQLIDLLRRIFVVHGTSPEVADVLAENCAS 45 (343)
T ss_dssp ECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345677788899999999999999999998753
No 18
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.31A {Sinorhizobium meliloti}
Probab=46.97 E-value=24 Score=29.76 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
..++-++-+.++|++.|+++++|+.+++.|..
T Consensus 27 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 58 (357)
T 3uoe_A 27 PPARLRNLSVALLEKRGVPADSARLQANLLLE 58 (357)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34566777899999999999999999998753
No 19
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic dysentery, ssgcid, NI infectious disease, structural genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Probab=46.61 E-value=24 Score=29.71 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
..+.-++-+.++|++.|+++++|+.+++.|..
T Consensus 10 ~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 41 (365)
T 3i0p_A 10 SIDTIKEFMYQVLLKVGSDEENARMVRDTLIA 41 (365)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34566777899999999999999999998753
No 20
>1v9n_A Malate dehydrogenase; riken structural genomics/proteomics initiati structural genomics, oxidoreductase; HET: NDP; 2.10A {Pyrococcus horikoshii}
Probab=46.03 E-value=25 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=27.4
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
.+++-++-+.++|++.|+++++|+.+++.|..
T Consensus 15 ~~~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 46 (360)
T 1v9n_A 15 PKDRLFSFIVRVLTKLGVPEEDAKIVADNLVM 46 (360)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45667788899999999999999999998753
No 21
>1z2i_A Malate dehydrogenase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: NAD; 2.20A {Agrobacterium tumefaciens}
Probab=45.63 E-value=26 Score=29.47 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=28.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
-.++.-++-+.++|++.|+++++|+.+++.|..
T Consensus 12 v~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 44 (358)
T 1z2i_A 12 ARLDELERFCRAVFLAVGTDEETADAATRAMMH 44 (358)
T ss_dssp ECHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345667788899999999999999999998753
No 22
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=43.09 E-value=35 Score=24.19 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
+.+++++.|...||++..+.......-.+.+..++++
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL 43 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYL 43 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 4567777778888888877777666665666655544
No 23
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.60 E-value=20 Score=21.01 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+.++-+...||+++.|+.....- .|.+..++.++
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~-~n~e~A~~~L~ 44 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT-STMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS-CSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44566777899999888866665 47777777654
No 24
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Probab=42.50 E-value=26 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 107 APDIEAAECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
.+++-++-+.++|++.|+++++|+.+++.|..
T Consensus 30 ~~~el~~~~~~~l~~~G~~~~~A~~vA~~Lv~ 61 (385)
T 2g8y_A 30 DAQTLHSFIQAVFRQMGSEEQEAKLVADHLIA 61 (385)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45777788899999999999999999998753
No 25
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.44 E-value=42 Score=25.48 Aligned_cols=61 Identities=8% Similarity=0.099 Sum_probs=38.8
Q ss_pred hhhhhhccchHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChH
Q 032010 82 GYLAAKSEADHYVREL----KREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPKH 142 (149)
Q Consensus 82 ~YlS~kse~d~~~~e~----~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~ 142 (149)
.|+....|....-.++ +.+.+++.......++||.+++....+++..++.+++++.+-...
T Consensus 64 ~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~q 128 (175)
T 3lay_A 64 GGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQK 128 (175)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5666555444433333 334445555556778999999999999999999999988765443
No 26
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=41.80 E-value=38 Score=23.98 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=32.4
Q ss_pred HhhhhhhhhhccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 032010 78 MGLGGYLAAKSEADHYVRELKREQEEIINAPDIEAAECAEILAQ 121 (149)
Q Consensus 78 Ma~G~YlS~kse~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~ 121 (149)
.=+|.||+..-+-...+...-+|.|.+-+ +.|++.|..++.+
T Consensus 58 ~~iGdyLA~~vdP~N~EerlLkELW~Va~--eeEq~~LA~mmvK 99 (104)
T 3d0w_A 58 AILGDYLAKHEEPQNGEEMLLQELWSVAD--EDEKEHLAQLLVK 99 (104)
T ss_dssp HHHHHHHHTCCCCCSHHHHHHHHHHHHCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 44689999999988888888899998865 5566766666543
No 27
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=39.81 E-value=50 Score=20.72 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~ 137 (149)
..++..+.|...|+++.+|+.+++.+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~ 42 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLL 42 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 457899999999999999999999885
No 28
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=39.50 E-value=16 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=30.2
Q ss_pred HHHhcCcH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 102 EEIINAPD--IEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 102 ~ei~~~pe--~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
..++.+.+ -..+|+..++...|++++++..+.+.+-.+.+
T Consensus 17 ~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~d 58 (95)
T 1c07_A 17 LKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDC 58 (95)
T ss_dssp HHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCS
T ss_pred HHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCC
Confidence 34454444 36788999999999999999998888766654
No 29
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=39.33 E-value=38 Score=24.79 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~ 138 (149)
.||.+-|..+|++++....+.+.|..
T Consensus 35 ~EL~~KL~~kg~~~e~Ie~vl~~l~~ 60 (162)
T 3dfg_A 35 KELNRKLQARGIEPEAAQAAVERLAG 60 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.90 E-value=26 Score=22.10 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNAL-KRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l-~~~~~~~~~~Mm 148 (149)
+.++-+...||+++.|+.....- ..+.+..+++++
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34566788999999998877766 367777777664
No 31
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=37.70 E-value=16 Score=23.56 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
..+|+..++...|++.+++..+.+.+-.+.+
T Consensus 27 ~~~el~~~l~~~g~~~~~~~~i~~~~D~d~d 57 (92)
T 1fi6_A 27 PGSAAKEFFTKSKLPILELSHIWELSDFDKD 57 (92)
T ss_dssp EHHHHHHHHHHHSSCHHHHHHHHHHHCTTCS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHCCCCC
Confidence 5688888999999999999888887766654
No 32
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.05 E-value=42 Score=21.81 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH-hCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALK-RNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~-~~~~~~~~~Mm 148 (149)
++.++-|...||+++.|++....-. .+.+.-+++++
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~ 46 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM 46 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455667778999998888777665 35776666654
No 33
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=36.17 E-value=89 Score=23.54 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 89 EADHYVRELKREQEEIINAP--DIEAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 89 e~d~~~~e~~rE~~ei~~~p--e~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
.++.|+...++-.+.....| ..+-++.++-+.+.||+++.|..+.....=|.+..++.+
T Consensus 138 ~~~~f~~~a~~~~~~~a~~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 138 NPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45555444443333333333 456688899999999999999987776666666655554
No 34
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=35.95 E-value=42 Score=22.13 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHh
Q 032010 112 AAECAEILAQY--GAEPHEYEGVVNALKR 138 (149)
Q Consensus 112 ~~el~~iy~~~--Gls~~~A~~v~~~l~~ 138 (149)
+++|++.+..+ |++..++..+++.+..
T Consensus 3 k~eli~~ia~~~~~ls~~~~~~~l~~~~~ 31 (94)
T 1owf_B 3 KSELIERLATQQSHIPAKTVEDAVKEMLE 31 (94)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46677666644 9999999999887653
No 35
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=35.88 E-value=54 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
+...++-+...+..+||+.+.+..+.+.+
T Consensus 178 ~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 178 ERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 35679999999999999999999888765
No 36
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=35.34 E-value=1.4e+02 Score=26.13 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=56.4
Q ss_pred cccchhhhHHHhhcccchHH---HHHHH-----------HhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccch
Q 032010 26 FTSSEIVRDIIIGVSDGLTV---PFALA-----------AGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKSEAD 91 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt---~falv-----------aGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~kse~d 91 (149)
..-.+++|+++|-..||++= -=|-| +-..|.... + |..++.--+..--..|=..+..++
T Consensus 268 rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~~----f---l~~Lv~~v~~~m~~~yPel~~~~~ 340 (465)
T 1yfs_A 268 RVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENP----F---LYKGVDLVVDIMKEPYPELELSRE 340 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCSC----C---HHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred EEEcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCch----h---HHHHHHHHHHHHhccCchhhhhHH
Confidence 34578899999999998741 11100 011122211 1 223333334444455666666666
Q ss_pred HHHHHHHHHHHHHhcCc-------HH-------------HHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 92 HYVRELKREQEEIINAP-------DI-------------EAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 92 ~~~~e~~rE~~ei~~~p-------e~-------------E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.....++.|+.....-- +. --+....+|-.+|||.|..+.++++
T Consensus 341 ~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e 404 (465)
T 1yfs_A 341 FVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIARE 404 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHH
Confidence 66666665553332211 11 1134677899999999999988864
No 37
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=34.72 E-value=23 Score=24.07 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
-..+|+..++...|++.++...+.+..-.+.+
T Consensus 31 Is~~el~~~l~~~gl~~~el~~i~~~~D~d~d 62 (106)
T 1eh2_A 31 LSGDKVKPVLLNSKLPVDILGRVWELSDIDHD 62 (106)
T ss_dssp CBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCS
T ss_pred EcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCC
Confidence 35678999999999999999988887766654
No 38
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.11 E-value=40 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
++.++-+...||+++.|+...+.-..|.+.-++.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L 64 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGGDIEKATDWV 64 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 34456678889999999887776656666666654
No 39
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.53 E-value=41 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++.++-+...||+++.|+...+.-.-|.+..+++++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~ 65 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLA 65 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345677788899999999887776666666666553
No 40
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=32.79 E-value=27 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
-..+|+..++...|++++++..+...+-.+.+
T Consensus 44 I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~d 75 (91)
T 2pmy_A 44 LEREEFRALCTELRVRPADAEAVFQRLDADRD 75 (91)
T ss_dssp EEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCS
T ss_pred CcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCC
Confidence 36788999999999999999888888766654
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.79 E-value=42 Score=22.39 Aligned_cols=36 Identities=6% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++.++-+...||+++.|+.....-..|.+.-+++++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345566777899999998877765556666666553
No 42
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=32.60 E-value=52 Score=25.26 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=10.6
Q ss_pred CcHHHHHHHHHHHHhcCCCHH
Q 032010 107 APDIEAAECAEILAQYGAEPH 127 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~ 127 (149)
.|+..++++.+-+...|+=.|
T Consensus 90 ~~~e~i~~vl~~L~~~g~ldD 110 (221)
T 3d5l_A 90 TPEEFVEPILKKLRGQQLIDD 110 (221)
T ss_dssp CCHHHHHHHHHHHHHTTCCCH
T ss_pred CCHHHHHHHHHHHHHcCCCCH
Confidence 344555555555555555433
No 43
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.37 E-value=47 Score=20.67 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhCChHHHHhhh
Q 032010 107 APDIEAAECAEILAQYGAEPHEY-EGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 107 ~pe~E~~el~~iy~~~Gls~~~A-~~v~~~l~~~~~~~~~~Mm 148 (149)
.|+..-++-.+-+...||+++++ ......-.-|.+..++.+.
T Consensus 12 ~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 12 DPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp SHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45666666778888999975544 6666655566666666553
No 44
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.64 E-value=23 Score=23.41 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
..+|+..++...|++.+++..+.+.+-.+.+
T Consensus 29 s~~el~~~l~~~~l~~~~l~~i~~~~D~d~d 59 (99)
T 1qjt_A 29 LALDAAAFLKKSGLPDLILGKIWDLADTDGK 59 (99)
T ss_dssp CSHHHHHHHHTSSSCHHHHHHHHHHHCCSSS
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHCCCCC
Confidence 5578999999999999999998888765543
No 45
>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV}
Probab=30.22 E-value=71 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQY--GAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~--Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
+.+...+.+. |++++.+..++=.|++|++.+...+
T Consensus 37 d~L~~~L~~~~~~ldE~~~E~l~l~LA~nkd~l~~~l 73 (91)
T 3erm_A 37 ELLTDVLIKNVPGLSEKHAEDASIYMAKNRAVFAAAF 73 (91)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666644 7899999999999999999887654
No 46
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.20 E-value=49 Score=22.04 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH-hCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALK-RNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~-~~~~~~~~~Mm 148 (149)
++.++-+...||+++.|++....-. .|.+.-++.++
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~ 66 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4556777788999999988776654 46776666654
No 47
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=29.79 E-value=27 Score=22.25 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=23.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCChHH
Q 032010 116 AEILAQYGAEPHEYEGVVNALKRNPKHW 143 (149)
Q Consensus 116 ~~iy~~~Gls~~~A~~v~~~l~~~~~~~ 143 (149)
.+.|...|.|++.|...+.+|.+||++.
T Consensus 28 t~Aa~kAGYs~~tA~~~as~LL~~~~V~ 55 (63)
T 2cmp_A 28 TKAAIAAGYSKNSASAIGAENLQKPAIR 55 (63)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHSHHHH
T ss_pred HHHHHHhcCCHhHHHHHHHHHHCchHHH
Confidence 3557777999999999999999999864
No 48
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=29.68 E-value=52 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
.+...++...|+++++... ||+..++++
T Consensus 32 ~eW~~ll~~sGIs~~e~~~-------np~~v~dvl 59 (80)
T 1f3m_A 32 EQWARLLQTSNITKSEQKK-------NPQAVLDVL 59 (80)
T ss_dssp HHHHHHHHTSCCCHHHHHH-------CHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH-------CHHHHHHHH
Confidence 3455667788999876644 666666553
No 49
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.43 E-value=73 Score=23.04 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..+++-+...+..+||+.+.+..+.+.+
T Consensus 130 ~~~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 130 FSEKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 4678899999999999999998776654
No 50
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=29.25 E-value=44 Score=20.36 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHh-cCcHH---HHHHHHHHHHh---cC--CCHHHHHHHHHHHHhCCh
Q 032010 96 ELKREQEEII-NAPDI---EAAECAEILAQ---YG--AEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 96 e~~rE~~ei~-~~pe~---E~~el~~iy~~---~G--ls~~~A~~v~~~l~~~~~ 141 (149)
+++.-=..++ .+.++ ..+|+..++.. .| ++++++..+...+-.+.+
T Consensus 11 ~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~d 65 (90)
T 1k8u_A 11 LLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKD 65 (90)
T ss_dssp HHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCC
Confidence 3443344556 36655 67888888887 66 678888888888876665
No 51
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.41 E-value=41 Score=21.19 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-hCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALK-RNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~-~~~~~~~~~Mm 148 (149)
+.++-+...||+++.|+.....-. +|.+.-++.++
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345667778999999988777655 37777777664
No 52
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=28.30 E-value=14 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 114 ECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 114 el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
+-++-+...||++..|.++-..--+|.+..++.+.
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34556778899999998876666677777766653
No 53
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.91 E-value=29 Score=23.07 Aligned_cols=50 Identities=6% Similarity=0.161 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 88 SEADHYVRELKREQEEIINAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 88 se~d~~~~e~~rE~~ei~~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
+++|.++.. +..|.+-|+++.-...+|=.+.|+++.++.++.-.|.+.-.
T Consensus 9 ~~~~~~~~v----~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 9 NDAEIFSLV----KKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDT 58 (75)
T ss_dssp CSHHHHHHH----HHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHH----HHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 455666544 46788899988888899999999999999998888776543
No 54
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=26.76 E-value=86 Score=20.41 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=18.0
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 032010 112 AAECAEILA-QYGAEPHEYEGVVNALK 137 (149)
Q Consensus 112 ~~el~~iy~-~~Gls~~~A~~v~~~l~ 137 (149)
+++|++.+. ..|++..++..+++.+.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 2o97_B 3 KSQLIDKIAAGADISKAAAGRALDAII 29 (90)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 355655544 56999999999988765
No 55
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.56 E-value=64 Score=23.52 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 032010 109 DIEAAECAEILAQYGAEPHEYEGVVN 134 (149)
Q Consensus 109 e~E~~el~~iy~~~Gls~~~A~~v~~ 134 (149)
..+++-+...|..+||+.+.+..+.+
T Consensus 132 ~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 132 LAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 46888999999999999999988754
No 56
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.90 E-value=74 Score=19.81 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 032010 113 AECAEILAQYGAEPHEYEGVV 133 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~ 133 (149)
..=++.|+.|||+.++.....
T Consensus 31 ~~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 31 ATRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 344678999999999987654
No 57
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.53 E-value=38 Score=25.22 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
.+.-..||.+-|..+|++++.+..|.+.|..+
T Consensus 31 r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~ 62 (177)
T 3e3v_A 31 QLRTRKEVEDKLRSLDIHEDYISEIINKLIDL 62 (177)
T ss_dssp SCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 34445666666667777777777766666543
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=24.46 E-value=1.4e+02 Score=18.80 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHH
Q 032010 111 EAAECAEILAQYGAEPHEYEGVVNALKRNPKHWLD 145 (149)
Q Consensus 111 E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~ 145 (149)
..++=++-|...|++.+++.+....-..|=+..-|
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtN 40 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKN 40 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHH
Confidence 34445666889999999998876654444444333
No 59
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=24.38 E-value=70 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 032010 55 GADVPSSIILIAGIAEVAAGAVSMGLGG 82 (149)
Q Consensus 55 ga~~~~~~VllaGla~liAgaiSMa~G~ 82 (149)
+.+.+|.-.|++++++.++.++.|.+..
T Consensus 29 ~~g~nP~eLllaala~C~~~~~~~~a~~ 56 (132)
T 2e8e_A 29 EKGLNPMELLLVSIGSCSGVDVYHILKK 56 (132)
T ss_dssp TTSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6778999999999999998888877663
No 60
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=24.23 E-value=91 Score=20.46 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHH-HhcCCCHHHHHHHHHHHHh
Q 032010 112 AAECAEIL-AQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 112 ~~el~~iy-~~~Gls~~~A~~v~~~l~~ 138 (149)
+++|++.+ ...|++..++..+++.+..
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (94)
T 1p71_A 3 KGELVDAVAEKASVTKKQADAVLTAALE 30 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555444 4569999999998887653
No 61
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=24.11 E-value=61 Score=19.93 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=20.3
Q ss_pred HHHHHHHHHHh-----c--CCCHHHHHHHHHHHHhCCh
Q 032010 111 EAAECAEILAQ-----Y--GAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 111 E~~el~~iy~~-----~--Gls~~~A~~v~~~l~~~~~ 141 (149)
..+|+..++.. . .++++++..+...+-.+.+
T Consensus 29 ~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~d 66 (93)
T 1k2h_A 29 SKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGD 66 (93)
T ss_dssp CHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Confidence 56666666665 3 3677777777777665554
No 62
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=24.08 E-value=40 Score=24.32 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
-..+|+..++...|++.++..++.+..-.|.+
T Consensus 67 Is~~El~~~l~~~gl~~~el~~I~~~~D~d~d 98 (139)
T 2jq6_A 67 ITGANAKKEMVKSKLPNTVLGKIWKLADVDKD 98 (139)
T ss_dssp EEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCC
T ss_pred ECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCC
Confidence 46789999999999999999998887766654
No 63
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=24.04 E-value=93 Score=20.18 Aligned_cols=26 Identities=0% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHH-HhcCCCHHHHHHHHHHHH
Q 032010 112 AAECAEIL-AQYGAEPHEYEGVVNALK 137 (149)
Q Consensus 112 ~~el~~iy-~~~Gls~~~A~~v~~~l~ 137 (149)
+++|.+.+ ...|++..++..+++.+.
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTL 29 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34555444 466999999999888765
No 64
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.81 E-value=34 Score=20.94 Aligned_cols=40 Identities=13% Similarity=-0.070 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHhCChHHHHhh
Q 032010 108 PDIEAAECAEILAQYGAEPHEY-EGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A-~~v~~~l~~~~~~~~~~M 147 (149)
|+..-++-.+-+...||+++++ .+....---|-+..++++
T Consensus 5 p~~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 5 SSGHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp CCCSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433355567788889988765 555544444445544443
No 65
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=23.65 E-value=96 Score=20.07 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=18.5
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHh
Q 032010 113 AECAEIL-AQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 113 ~el~~iy-~~~Gls~~~A~~v~~~l~~ 138 (149)
++|++.+ ...|++..++..+++.+..
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 4 KELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4554444 4569999999998887653
No 66
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.09 E-value=1e+02 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH-hCChHHHHhhh
Q 032010 115 CAEILAQYGAEPHEYEGVVNALK-RNPKHWLDFMM 148 (149)
Q Consensus 115 l~~iy~~~Gls~~~A~~v~~~l~-~~~~~~~~~Mm 148 (149)
.++-|...||+++.|.+....-. ++.+.-++.++
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667789999998888776554 36776666554
No 67
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.82 E-value=1.8e+02 Score=19.50 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHH
Q 032010 108 PDIEAAECAEILAQYGAEPHEYEG 131 (149)
Q Consensus 108 pe~E~~el~~iy~~~Gls~~~A~~ 131 (149)
....++++.+.+...||++++...
T Consensus 57 r~~Kl~~~~e~l~~~GI~~eeL~~ 80 (86)
T 3nr7_A 57 RTRKLQQYREMLIADGIDPNELLN 80 (86)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHh
Confidence 455678888999999999988643
No 68
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.29 E-value=1e+02 Score=23.29 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=27.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 116 AEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 116 ~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++-+...||+++.+.++-..--+|.+.+++++.
T Consensus 134 I~rL~~mGF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 134 ISRLCELGFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577889999999999988777788888888765
No 69
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=22.27 E-value=1e+02 Score=20.48 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHHHH-HhcCCCHHHHHHHHHHHHh
Q 032010 112 AAECAEIL-AQYGAEPHEYEGVVNALKR 138 (149)
Q Consensus 112 ~~el~~iy-~~~Gls~~~A~~v~~~l~~ 138 (149)
+++|++.+ ...|++..++..+++.+..
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~ 30 (99)
T 3c4i_A 3 KAELIDVLTQKLGSDRRQATAAVENVVD 30 (99)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555444 4569999999998887653
No 70
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=22.04 E-value=3.9e+02 Score=23.18 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=57.7
Q ss_pred cccchhhhHHHhhcccchHH-----------------HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 032010 26 FTSSEIVRDIIIGVSDGLTV-----------------PFALAAGLSGADVPSSIILIAGIAEVAAGAVSMGLGGYLAAKS 88 (149)
Q Consensus 26 ~~~~~~iR~~V~G~~DGlvt-----------------~falvaGvaga~~~~~~VllaGla~liAgaiSMa~G~YlS~ks 88 (149)
..-.+++|+++|-..||++= -.+-..|+-... |..++.-.+..--..|=..+.
T Consensus 281 rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~~Lg~~~~f----------l~~Lv~~v~~~m~~~yPeL~~ 350 (441)
T 3hy0_A 281 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF----------FYKLVGPLIDVMGSAGEDLKR 350 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCSCC----------GGGGHHHHHHHHGGGGHHHHH
T ss_pred EEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHHHHHHHHhCCCCcc----------HHHHHHHHHHHHhhhhhHHHh
Confidence 34577899999999998741 111111111111 222333333333455766666
Q ss_pred cchHHHHHHHHHHHHHhcCcHH-----------------HHHHHHHHHHhcCCCHHHHHHHHHH
Q 032010 89 EADHYVRELKREQEEIINAPDI-----------------EAAECAEILAQYGAEPHEYEGVVNA 135 (149)
Q Consensus 89 e~d~~~~e~~rE~~ei~~~pe~-----------------E~~el~~iy~~~Gls~~~A~~v~~~ 135 (149)
.++.....++.|+..+..--+. --+.+..+|-.+|||.|..+.++++
T Consensus 351 ~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e 414 (441)
T 3hy0_A 351 QQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRE 414 (441)
T ss_dssp THHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHH
Confidence 6777777777666444432221 1245567889999999998888864
No 71
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=21.68 E-value=91 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 106 NAPDIEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 106 ~~pe~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
..+..+..++++-+...|+.+.+|.++++.+-++++
T Consensus 46 k~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~t~d 81 (107)
T 1go3_F 46 KLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLD 81 (107)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCSHH
T ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCHH
Confidence 344557777778788899999999999987666554
No 72
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=21.51 E-value=32 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=17.1
Q ss_pred chhhhHHHhhcccchHHHHHH
Q 032010 29 SEIVRDIIIGVSDGLTVPFAL 49 (149)
Q Consensus 29 ~~~iR~~V~G~~DGlvt~fal 49 (149)
-.+++..|||...||.|++=.
T Consensus 45 e~Fv~vsIlGFlEGiLttLK~ 65 (103)
T 2hjm_A 45 EAFAKASIYGFLEGILTTLKM 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999887643
No 73
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=21.50 E-value=1.1e+02 Score=21.37 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHHhhh
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLDFMM 148 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~Mm 148 (149)
++.++-+...||+++.|......-..|.+.-++.++
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455677788899999998877766566666666554
No 74
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.20 E-value=90 Score=20.47 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q 032010 113 AECAEILAQYGAEPHEYEGVVNAL 136 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l 136 (149)
..=++.|+.|||+.++....-..-
T Consensus 36 ~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 36 ATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 344678999999999998876653
No 75
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=21.10 E-value=1.2e+02 Score=16.87 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc
Q 032010 65 IAGIAEVAAGAVSMGLGGYLAAKS 88 (149)
Q Consensus 65 laGla~liAgaiSMa~G~YlS~ks 88 (149)
+.+....++..+..|.|-|+.-|+
T Consensus 4 ~i~y~~~l~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 4 IVAYIGFLALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888998988776
No 76
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.02 E-value=85 Score=19.54 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=23.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCChHHHHhh
Q 032010 116 AEILAQYGAEPHEYEGVVNALKRNPKHWLDFM 147 (149)
Q Consensus 116 ~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~~M 147 (149)
++.|...||++++|.+....---|-+...+++
T Consensus 13 I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 13 IERLMSQGYSYQDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence 56678899999999987776656655544443
No 77
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=20.66 E-value=51 Score=22.05 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCh
Q 032010 110 IEAAECAEILAQYGAEPHEYEGVVNALKRNPK 141 (149)
Q Consensus 110 ~E~~el~~iy~~~Gls~~~A~~v~~~l~~~~~ 141 (149)
-..+|+..++...+++.+++..+.+.+-.+.+
T Consensus 31 I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~d 62 (111)
T 2kgr_A 31 LTGPQARTILMQSSLPQAQLASIWNLSDIDQD 62 (111)
T ss_dssp EEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCC
T ss_pred CcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCC
Confidence 36788888888889999999988887766654
No 78
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.63 E-value=92 Score=20.07 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCChHHHH
Q 032010 113 AECAEILAQYGAEPHEYEGVVNALKRNPKHWLD 145 (149)
Q Consensus 113 ~el~~iy~~~Gls~~~A~~v~~~l~~~~~~~~~ 145 (149)
++.++.+...||+++.|+.....--.|.+..+|
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaD 52 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILD 52 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHH
Confidence 455788889999999988766655555555444
No 79
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=20.46 E-value=99 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=24.8
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 032010 54 SGADVPSSIILIAGIAEVAAGAVSMGLGG 82 (149)
Q Consensus 54 aga~~~~~~VllaGla~liAgaiSMa~G~ 82 (149)
-+.+.+|.-.|+++++++++.++.+.+..
T Consensus 61 ~~~g~nPeeLllaalaaC~~~~l~~~a~~ 89 (162)
T 1nye_A 61 GEKGTNPEELIGAAHAACFSMALSLMLGE 89 (162)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999998887764
No 80
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.20 E-value=81 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=18.5
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 032010 112 AAECAEILA-QYGAEPHEYEGVVNALK 137 (149)
Q Consensus 112 ~~el~~iy~-~~Gls~~~A~~v~~~l~ 137 (149)
++||++.+. ..|++..++..+++.+.
T Consensus 6 k~eLi~~ia~~~~lsk~~~~~~v~~~~ 32 (93)
T 3rhi_A 6 KTELIKNVAQNAEISQKEATVVVQTVV 32 (93)
T ss_dssp -CHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 345555544 56999999999988765
No 81
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=20.16 E-value=71 Score=21.50 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 032010 112 AAECAEILAQYGAEPHEYEGVVNALKRN 139 (149)
Q Consensus 112 ~~el~~iy~~~Gls~~~A~~v~~~l~~~ 139 (149)
...|...+ ..+++++|+..|++.|.++
T Consensus 65 v~~M~~mp-g~~Is~eda~~Iv~YLa~~ 91 (92)
T 3a9f_A 65 VKRMQGFP-GSGISDDDAKTIGIWLHEK 91 (92)
T ss_dssp HHHHHHST-TCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCCCHHHHHHHHHHHHHh
Confidence 33443333 5799999999999998763
No 82
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=20.06 E-value=1.1e+02 Score=22.16 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=24.6
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhhhh
Q 032010 54 SGADVPSSIILIAGIAEVAAGAVSMGLGG 82 (149)
Q Consensus 54 aga~~~~~~VllaGla~liAgaiSMa~G~ 82 (149)
.+.+.+|.-.+++++++.++.++.|.+..
T Consensus 60 ~~~g~nP~ELllaalaaC~~~~~~~~a~~ 88 (166)
T 1lql_A 60 TAKGFGPLAALLSGLAACELATANLMAPA 88 (166)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998887664
Done!