Query 032012
Match_columns 149
No_of_seqs 113 out of 843
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 4.9E-39 1.1E-43 258.2 14.6 131 3-133 98-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 5.8E-37 1.3E-41 245.6 12.1 128 3-131 99-236 (236)
3 cd01951 lectin_L-type legume l 100.0 1.8E-29 3.9E-34 199.8 14.1 121 5-132 94-223 (223)
4 cd07308 lectin_leg-like legume 99.2 3.7E-10 7.9E-15 89.4 13.7 109 16-131 98-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 98.8 1.4E-07 3E-12 75.8 12.5 113 16-132 100-223 (225)
6 cd06903 lectin_EMP46_EMP47 EMP 98.0 0.00012 2.5E-09 58.6 11.9 100 17-131 102-212 (215)
7 cd06901 lectin_VIP36_VIPL VIP3 97.8 0.00043 9.4E-09 56.4 11.5 110 17-132 100-222 (248)
8 PF03388 Lectin_leg-like: Legu 97.7 0.00063 1.4E-08 54.6 11.5 110 16-130 101-225 (229)
9 KOG3838 Mannose lectin ERGIC-5 96.9 0.016 3.4E-07 50.5 11.1 106 18-129 134-251 (497)
10 cd06900 lectin_VcfQ VcfQ bacte 94.5 0.73 1.6E-05 37.9 10.6 29 102-130 225-253 (255)
11 KOG3839 Lectin VIP36, involved 91.8 0.26 5.6E-06 42.1 4.3 106 18-130 153-272 (351)
12 PF13619 KTSC: KTSC domain 33.2 54 0.0012 20.5 2.7 19 65-83 6-24 (60)
13 cd08389 C2A_Synaptotagmin-14_1 31.6 70 0.0015 22.6 3.4 22 62-83 3-24 (124)
14 PRK08493 NADH dehydrogenase su 27.4 47 0.001 31.8 2.4 42 1-42 636-694 (819)
15 cd08390 C2A_Synaptotagmin-15-1 25.4 1.1E+02 0.0023 21.0 3.5 22 63-84 2-23 (123)
16 PF11225 DUF3024: Protein of u 24.5 63 0.0014 20.2 1.9 21 65-85 6-26 (57)
17 smart00159 PTX Pentraxin / C-r 23.6 2.1E+02 0.0045 22.1 5.1 28 56-83 85-112 (206)
18 cd00276 C2B_Synaptotagmin C2 d 23.3 1.2E+02 0.0026 20.9 3.4 21 63-83 2-22 (134)
19 PF10049 DUF2283: Protein of u 21.9 1E+02 0.0022 18.6 2.4 16 67-82 2-17 (50)
20 cd08388 C2A_Synaptotagmin-4-11 20.6 1.7E+02 0.0037 20.7 3.8 22 62-83 3-24 (128)
21 cd08521 C2A_SLP C2 domain firs 20.5 1.6E+02 0.0034 20.1 3.5 21 63-83 2-22 (123)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=4.9e-39 Score=258.19 Aligned_cols=131 Identities=31% Similarity=0.413 Sum_probs=118.7
Q ss_pred CCCcccCCCC---CCCCCCEEEEEEeCccCC-C-CCCCCceeeecCccccccccccc--ccccCCCceeEEEEEEeCCCC
Q 032012 3 FSSYLSKFPL---YLPRPHGSRFESDVYVNS-W-DPTISKLLVSISTLCNQRKMYLL--RSDVKSGRRNEAWISYNSSTH 75 (149)
Q Consensus 3 ~~~yLGl~~~---~~~~~~~vAVEFDT~~n~-~-Dp~~nHVgIdins~~S~~~~~~~--~~~l~~G~~~~awI~Yd~~~~ 75 (149)
.|+||||++. +.+.++.|||||||++|. + ||+.|||||++|++.|..+..|. ...|.+|+.++|||+||+.++
T Consensus 98 ~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~ 177 (236)
T cd06899 98 SGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYWDDDGGKLKSGKPMQAWIDYDSSSK 177 (236)
T ss_pred CcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeeccccccccccCCCeEEEEEEEcCCCC
Confidence 5899999983 346889999999999998 4 99999999999999888877763 234689999999999999999
Q ss_pred ceEEEEEcCCCCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEEEeC
Q 032012 76 NPSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNSS 133 (149)
Q Consensus 76 ~L~V~l~~~~~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF~s~ 133 (149)
+|+|+|......+|..|+|++.+||+.+|+++|||||||+||...|.|+|++|+|+++
T Consensus 178 ~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 178 RLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred EEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 9999999887667889999999999999999999999999999999999999999876
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=5.8e-37 Score=245.56 Aligned_cols=128 Identities=26% Similarity=0.364 Sum_probs=112.4
Q ss_pred CCCcccCCCC---CCCCCCEEEEEEeCccCC--CCCCCCceeeecCccccccccccc-----ccccCCCceeEEEEEEeC
Q 032012 3 FSSYLSKFPL---YLPRPHGSRFESDVYVNS--WDPTISKLLVSISTLCNQRKMYLL-----RSDVKSGRRNEAWISYNS 72 (149)
Q Consensus 3 ~~~yLGl~~~---~~~~~~~vAVEFDT~~n~--~Dp~~nHVgIdins~~S~~~~~~~-----~~~l~~G~~~~awI~Yd~ 72 (149)
.|++|||++. +...+++||||||||+|. .||+.+||||++|++.+..+.++. ..++.+|+.+.|||+||+
T Consensus 99 ~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~ 178 (236)
T PF00139_consen 99 SGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDA 178 (236)
T ss_dssp SGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE----EEEEHHHGTTSEEEEEEEEET
T ss_pred CCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCcccccccccccccccccccCCcEEEEEEEEcC
Confidence 3689999883 334789999999999987 599999999999999988774431 567899999999999999
Q ss_pred CCCceEEEEEcCCCCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEEE
Q 032012 73 STHNPSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFN 131 (149)
Q Consensus 73 ~~~~L~V~l~~~~~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF~ 131 (149)
.+++|+|++.... .+|..|+|++.+||+.+|+++||||||||||...|.|.|++|+|+
T Consensus 179 ~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 179 STKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp TTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred CccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEEEEeC
Confidence 9999999999875 578889999999999999999999999999999999999999995
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=99.96 E-value=1.8e-29 Score=199.85 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=101.7
Q ss_pred CcccCCCCCCCCCCEEEEEEeCccCC--CCCCCCceeeecCccccc-------ccccccccccCCCceeEEEEEEeCCCC
Q 032012 5 SYLSKFPLYLPRPHGSRFESDVYVNS--WDPTISKLLVSISTLCNQ-------RKMYLLRSDVKSGRRNEAWISYNSSTH 75 (149)
Q Consensus 5 ~yLGl~~~~~~~~~~vAVEFDT~~n~--~Dp~~nHVgIdins~~S~-------~~~~~~~~~l~~G~~~~awI~Yd~~~~ 75 (149)
++||. ...++.+|||||||+|. +||+.+||||++|+..+. ....+ +....+|+.++|||+|++.++
T Consensus 94 ~~lG~----~~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~~-~~~~~~g~~~~v~I~Y~~~~~ 168 (223)
T cd01951 94 GGLGY----GGIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSASL-PNGTGLGNEHTVRITYDPTTN 168 (223)
T ss_pred CccCc----cccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceeeC-CCccCCCCEEEEEEEEeCCCC
Confidence 66774 35678999999999998 499999999999998643 23333 222233899999999999999
Q ss_pred ceEEEEEcCCCCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEEEe
Q 032012 76 NPSVAFTGFRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNS 132 (149)
Q Consensus 76 ~L~V~l~~~~~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF~s 132 (149)
+|+|+|..... |..++|+.++||+.+++++||||||||||...|.|+|++|+|.+
T Consensus 169 ~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 169 TLTVYLDNGST--LTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred EEEEEECCCCc--cccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 99999986553 56789999999999999999999999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.23 E-value=3.7e-10 Score=89.38 Aligned_cols=109 Identities=21% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCEEEEEEeCccCCCCCCCCceeeecC-cccccc------ccccc--ccccC-CCceeEEEEEEeCCCCceEEEEEcCC
Q 032012 16 RPHGSRFESDVYVNSWDPTISKLLVSIS-TLCNQR------KMYLL--RSDVK-SGRRNEAWISYNSSTHNPSVAFTGFR 85 (149)
Q Consensus 16 ~~~~vAVEFDT~~n~~Dp~~nHVgIdin-s~~S~~------~~~~~--~~~l~-~G~~~~awI~Yd~~~~~L~V~l~~~~ 85 (149)
..+.+||||||++|. +-...+|.+-+| +..+.. ...+. ..... .+.+++++|.|+ .+.|.|.+....
T Consensus 98 ~~~Glai~fdt~~n~-~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~~ 174 (218)
T cd07308 98 KFKGLAIFFDTYDND-GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYSE 174 (218)
T ss_pred CCCEEEEEEEcCCCC-CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCCC
Confidence 468999999999986 222335555443 222211 11111 11222 268999999999 578999997532
Q ss_pred CCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEEE
Q 032012 86 NNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFN 131 (149)
Q Consensus 86 ~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF~ 131 (149)
. ....+...++.- .|++.+|+||||+||...+.|+|++|.+.
T Consensus 175 ~---~~~~~c~~~~~~-~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 175 G---NNWKECFTVEDV-ILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred C---CCccEEEEcCCc-ccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 1 222344444432 46788999999999999999999999874
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=98.79 E-value=1.4e-07 Score=75.82 Aligned_cols=113 Identities=17% Similarity=0.008 Sum_probs=69.5
Q ss_pred CCCEEEEEEeCccCCCCCCCCceeeecC-cccccc------ccccc--cccc-CCCceeEEEEEEeCCCCceEEEEEcCC
Q 032012 16 RPHGSRFESDVYVNSWDPTISKLLVSIS-TLCNQR------KMYLL--RSDV-KSGRRNEAWISYNSSTHNPSVAFTGFR 85 (149)
Q Consensus 16 ~~~~vAVEFDT~~n~~Dp~~nHVgIdin-s~~S~~------~~~~~--~~~l-~~G~~~~awI~Yd~~~~~L~V~l~~~~ 85 (149)
.-.-+||.|||+.|........|.+-.| +..... ...+. .... ....+.+++|.|.. +.|+|.+....
T Consensus 100 ~f~Gl~I~~Dt~~n~~~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~--~~l~V~~d~~~ 177 (225)
T cd06902 100 KWNGVGIFFDSFDNDGKKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQ--NVLTVSINNGF 177 (225)
T ss_pred cccEEEEEEECCCCCCCCCCcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEEEEEEEC--CeEEEEEeCCc
Confidence 4468999999998854333346655543 322111 11111 1122 23568999999999 46888886422
Q ss_pred CCCcccceeEEEecCCc-CCCCceEEEEEeecCCCcceeEEEEEEEEe
Q 032012 86 NNSVVMQGLGYQVDLRQ-HLPEFVTFGFSMETRVDFVIFSIYSWEFNS 132 (149)
Q Consensus 86 ~~~p~~p~Ls~~vdLs~-~L~~~v~vGFSasTG~~~~~h~I~sWsF~s 132 (149)
. +.......-.++.. .||+..|+||||+||...+.|+|++|.|.+
T Consensus 178 ~--~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 178 T--PNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred C--CCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 1 11111111123333 467789999999999999999999999863
No 6
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=98.03 E-value=0.00012 Score=58.62 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCEEEEEEeCccCCCCCCCCceeeecC-ccccccc-----cccc--cc-ccCCCceeEEEEEEeCCCCceEEEEEcCCCC
Q 032012 17 PHGSRFESDVYVNSWDPTISKLLVSIS-TLCNQRK-----MYLL--RS-DVKSGRRNEAWISYNSSTHNPSVAFTGFRNN 87 (149)
Q Consensus 17 ~~~vAVEFDT~~n~~Dp~~nHVgIdin-s~~S~~~-----~~~~--~~-~l~~G~~~~awI~Yd~~~~~L~V~l~~~~~~ 87 (149)
-.-+||.|||+.|.. ..|.+-.| |...... ..+. .. ....+.+.+++|.|....+.|+|.+..
T Consensus 102 f~Gl~I~~Dt~~n~~----p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~---- 173 (215)
T cd06903 102 FDGLQLLIDNNGGSG----GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSGVPSTIRLSYDALNSLFKVQVDN---- 173 (215)
T ss_pred CcEEEEEEECCCCCC----ceEEEEECCCCeeccccCCcccccceeeEeccCCCCCEEEEEEEECCCCEEEEEECC----
Confidence 356999999998731 23333332 3221111 1111 11 234567899999999977788888742
Q ss_pred CcccceeEE-EecCCcCCC-CceEEEEEeecCCCcceeEEEEEEEE
Q 032012 88 SVVMQGLGY-QVDLRQHLP-EFVTFGFSMETRVDFVIFSIYSWEFN 131 (149)
Q Consensus 88 ~p~~p~Ls~-~vdLs~~L~-~~v~vGFSasTG~~~~~h~I~sWsF~ 131 (149)
..++.. .|. || ...|+||||+||...+.|+|++-.+.
T Consensus 174 ---~~Cf~~~~v~----lP~~~y~fGiSAaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 174 ---RLCFQTDKVQ----LPQGGYRFGITAANADNPESFEILKLKVW 212 (215)
T ss_pred ---CEEEecCCee----cCCCCCEEEEEEcCCCCCCcEEEEEEEEe
Confidence 123322 133 45 45679999999999999999987664
No 7
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=97.79 E-value=0.00043 Score=56.44 Aligned_cols=110 Identities=17% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCEEEEEEeCccCCCC---CCCCceeeecC-cccccc------ccccc--cccc-CCCceeEEEEEEeCCCCceEEEEEc
Q 032012 17 PHGSRFESDVYVNSWD---PTISKLLVSIS-TLCNQR------KMYLL--RSDV-KSGRRNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 17 ~~~vAVEFDT~~n~~D---p~~nHVgIdin-s~~S~~------~~~~~--~~~l-~~G~~~~awI~Yd~~~~~L~V~l~~ 83 (149)
-.-+||-|||+.|... ....-|.+-+| +..... ...+. ...+ ..+.+..++|.|... .|.|.+..
T Consensus 100 f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~rI~Y~~~--~l~v~vd~ 177 (248)
T cd06901 100 FHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFVAIRYSKG--RLTVMTDI 177 (248)
T ss_pred CceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeeccCCCCCeEEEEEEECC--eEEEEEec
Confidence 3579999999998521 12223433332 322111 11111 1122 345567899999974 57777764
Q ss_pred CCCCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEEEe
Q 032012 84 FRNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEFNS 132 (149)
Q Consensus 84 ~~~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF~s 132 (149)
.+.. ....++. ++ .-.||...|+||||+||...+.|+|++-.+..
T Consensus 178 ~~~~-~w~~Cf~--~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~ 222 (248)
T cd06901 178 DGKN-EWKECFD--VT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYE 222 (248)
T ss_pred CCCC-ceeeeEE--eC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEec
Confidence 4311 1122322 21 12367779999999999999999999987754
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=97.74 E-value=0.00063 Score=54.58 Aligned_cols=110 Identities=19% Similarity=0.089 Sum_probs=62.6
Q ss_pred CCCEEEEEEeCccCCCCC---CCCceeeecC-ccccccc------cccc--ccccC-CCceeEEEEEEeCCCCceEEEEE
Q 032012 16 RPHGSRFESDVYVNSWDP---TISKLLVSIS-TLCNQRK------MYLL--RSDVK-SGRRNEAWISYNSSTHNPSVAFT 82 (149)
Q Consensus 16 ~~~~vAVEFDT~~n~~Dp---~~nHVgIdin-s~~S~~~------~~~~--~~~l~-~G~~~~awI~Yd~~~~~L~V~l~ 82 (149)
.-.-+||=||||.|...+ ....|.+.+| +...... ..+. ...++ .+.+..++|.|... .|.|.+.
T Consensus 101 ~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y~~~--~l~v~id 178 (229)
T PF03388_consen 101 KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRIRISYSKN--TLTVSID 178 (229)
T ss_dssp S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTESSEEEEEEEEETT--EEEEEEE
T ss_pred ccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceeccCcCCCCEEEEEEEECC--eEEEEEe
Confidence 345799999999986433 2234444444 2221111 1111 12222 35678999999985 5677776
Q ss_pred cC--CCCCcccceeEEEecCCcCCCCceEEEEEeecCCCcceeEEEEEEE
Q 032012 83 GF--RNNSVVMQGLGYQVDLRQHLPEFVTFGFSMETRVDFVIFSIYSWEF 130 (149)
Q Consensus 83 ~~--~~~~p~~p~Ls~~vdLs~~L~~~v~vGFSasTG~~~~~h~I~sWsF 130 (149)
.. ........++... .-.||+..|+||||+||...+.|+|++-.-
T Consensus 179 ~~~~~~~~~~~~Cf~~~---~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 179 SNYLKNQDDWELCFTTD---GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp TSCCSECCTTEEEEEES---TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred cccccCCcCCcEEEEcC---CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 32 1111122344432 113677889999999999999999998543
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.016 Score=50.48 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=67.3
Q ss_pred CEEEEEEeCccCCCCCCCCceeeecC-cccc-cc-----cccccc--cccCCC-ceeEEEEEEeCCCCceEEEEEcCCCC
Q 032012 18 HGSRFESDVYVNSWDPTISKLLVSIS-TLCN-QR-----KMYLLR--SDVKSG-RRNEAWISYNSSTHNPSVAFTGFRNN 87 (149)
Q Consensus 18 ~~vAVEFDT~~n~~Dp~~nHVgIdin-s~~S-~~-----~~~~~~--~~l~~G-~~~~awI~Yd~~~~~L~V~l~~~~~~ 87 (149)
.-++|=||.|.|..--+..-|.+-.| +-.+ .. +.-+++ -+++|. -++.|+|+|=. ++|+|-+...-.
T Consensus 134 nGigiffDSfdnD~qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~--nvLtv~innGmt- 210 (497)
T KOG3838|consen 134 NGIGIFFDSFDNDGQKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYG--NVLTVMINNGMT- 210 (497)
T ss_pred cceEEEeecccccCCcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCCceEEEEEec--cEEEEEEcCCCC-
Confidence 46889999998864334445555554 2221 11 111211 144442 36899999987 689998864432
Q ss_pred Ccc-cceeEEEecCCc-CCCCceEEEEEeecCCCcceeEEEEEE
Q 032012 88 SVV-MQGLGYQVDLRQ-HLPEFVTFGFSMETRVDFVIFSIYSWE 129 (149)
Q Consensus 88 ~p~-~p~Ls~~vdLs~-~L~~~v~vGFSasTG~~~~~h~I~sWs 129 (149)
|. .+=+. ++... +||...|+|.||+||+...-|+|+++.
T Consensus 211 -p~d~yE~C--~rve~~~lp~nGyFGvSAATGgLADDHDVl~Fl 251 (497)
T KOG3838|consen 211 -PSDDYEFC--VRVENLLLPPNGYFGVSAATGGLADDHDVLSFL 251 (497)
T ss_pred -CCCCccee--EeccceeccCCCeeeeeecccccccccceeeeE
Confidence 22 12233 33333 468899999999999999999999875
No 10
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=94.49 E-value=0.73 Score=37.87 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.7
Q ss_pred cCCCCceEEEEEeecCCCcceeEEEEEEE
Q 032012 102 QHLPEFVTFGFSMETRVDFVIFSIYSWEF 130 (149)
Q Consensus 102 ~~L~~~v~vGFSasTG~~~~~h~I~sWsF 130 (149)
.-+|+..+++|++|||.+...|+|-..+.
T Consensus 225 ~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 225 DAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred CCCCccEEEEEEecCCCcccceeecceEe
Confidence 56789999999999999999999987654
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=0.26 Score=42.07 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=61.4
Q ss_pred CEEEEEEeCccCCCCCC---CCceeeecC-cccc------ccccccc--ccccCCCc-eeEEEEEEeCCCCceEEEEEcC
Q 032012 18 HGSRFESDVYVNSWDPT---ISKLLVSIS-TLCN------QRKMYLL--RSDVKSGR-RNEAWISYNSSTHNPSVAFTGF 84 (149)
Q Consensus 18 ~~vAVEFDT~~n~~Dp~---~nHVgIdin-s~~S------~~~~~~~--~~~l~~G~-~~~awI~Yd~~~~~L~V~l~~~ 84 (149)
+.+||=.|||-|..-|. ..-+.+.+| +..| .+.+.+. ...+++.. ....-|.|+. ++|++.....
T Consensus 153 ~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~iry~~--~~l~~~~dl~ 230 (351)
T KOG3839|consen 153 TGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNLPHDTLVVIRYEK--KTLSISIDLE 230 (351)
T ss_pred eeEEEEEeccCCcCCCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccCCCcceeEEEecC--CceEEEEecC
Confidence 46899999998853221 122333332 1111 1111111 11223322 2457799998 4555555433
Q ss_pred CCCCcccceeEEEecCCcC-CCCceEEEEEeecCCCcceeEEEEEEE
Q 032012 85 RNNSVVMQGLGYQVDLRQH-LPEFVTFGFSMETRVDFVIFSIYSWEF 130 (149)
Q Consensus 85 ~~~~p~~p~Ls~~vdLs~~-L~~~v~vGFSasTG~~~~~h~I~sWsF 130 (149)
+ |. ....-.+|..+ ||.-=|+|+||+||...+.|+|.+-.+
T Consensus 231 ~---~~--~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 231 G---PN--EWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred C---Cc--eeeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 3 22 24445666665 677789999999999999999988655
No 12
>PF13619 KTSC: KTSC domain
Probab=33.16 E-value=54 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.2
Q ss_pred EEEEEEeCCCCceEEEEEc
Q 032012 65 EAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 65 ~awI~Yd~~~~~L~V~l~~ 83 (149)
...|.||..++.|.|.+..
T Consensus 6 I~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 6 IRSVGYDPETRTLEVEFKS 24 (60)
T ss_pred ccEEeECCCCCEEEEEEcC
Confidence 4569999999999999953
No 13
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=31.65 E-value=70 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.1
Q ss_pred ceeEEEEEEeCCCCceEEEEEc
Q 032012 62 RRNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 62 ~~~~awI~Yd~~~~~L~V~l~~ 83 (149)
+.++..|.|++.+.+|.|++-.
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~ 24 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIR 24 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEE
Confidence 4688899999999999999864
No 14
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=27.42 E-value=47 Score=31.79 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=29.9
Q ss_pred CCCCCc--------ccCCC----CC----CCCCCEEEEEEeCccCCCCCCC-Cceeeec
Q 032012 1 MPFSSY--------LSKFP----LY----LPRPHGSRFESDVYVNSWDPTI-SKLLVSI 42 (149)
Q Consensus 1 ~~~~~y--------LGl~~----~~----~~~~~~vAVEFDT~~n~~Dp~~-nHVgIdi 42 (149)
.||.|| ||+-. +| .....+.+||||-..|.++.++ +|-|--+
T Consensus 636 ~~~~gy~lndia~~~~~~~~~~i~~t~~lp~~~~f~~~~fd~l~n~~~~~g~~~rgy~l 694 (819)
T PRK08493 636 LPFEGYDLNDIANALGFDEEYTIDYTKKLPTEKGFKAIEFDDLENYYTNDGSNHRGYEL 694 (819)
T ss_pred cCcCCeeHHHHHHHhCCChhhhhhhhhhcccccCcceeecccccccCCCCCccccCeee
Confidence 377777 67644 22 3456788999999999887664 7777555
No 15
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=25.41 E-value=1.1e+02 Score=21.00 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.8
Q ss_pred eeEEEEEEeCCCCceEEEEEcC
Q 032012 63 RNEAWISYNSSTHNPSVAFTGF 84 (149)
Q Consensus 63 ~~~awI~Yd~~~~~L~V~l~~~ 84 (149)
.+.+.+.|+..+.+|.|.+-..
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~~a 23 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLIKA 23 (123)
T ss_pred EEEEEEEECCCCCEEEEEEEEe
Confidence 5788999999999999998643
No 16
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.45 E-value=63 Score=20.18 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCceEEEEEcCC
Q 032012 65 EAWISYNSSTHNPSVAFTGFR 85 (149)
Q Consensus 65 ~awI~Yd~~~~~L~V~l~~~~ 85 (149)
.|+|.|+..++...++.....
T Consensus 6 iAk~~~~~~~~~W~lyw~~~~ 26 (57)
T PF11225_consen 6 IAKLTFDKTTGCWKLYWMDHD 26 (57)
T ss_pred eEEEEEeCCCCEEEEEEECCC
Confidence 589999999999999987544
No 17
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=23.60 E-value=2.1e+02 Score=22.13 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=24.5
Q ss_pred cccCCCceeEEEEEEeCCCCceEEEEEc
Q 032012 56 SDVKSGRRNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 56 ~~l~~G~~~~awI~Yd~~~~~L~V~l~~ 83 (149)
..+.+|+-+++-+.||+.+.++.+++..
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG 112 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDG 112 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECC
Confidence 4567899999999999999999999963
No 18
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=23.32 E-value=1.2e+02 Score=20.93 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=18.0
Q ss_pred eeEEEEEEeCCCCceEEEEEc
Q 032012 63 RNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 63 ~~~awI~Yd~~~~~L~V~l~~ 83 (149)
.+++.+.|++...+|.|++-.
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~ 22 (134)
T cd00276 2 ELLLSLSYLPTAERLTVVVLK 22 (134)
T ss_pred eEEEEEEeeCCCCEEEEEEEE
Confidence 477889999999999999864
No 19
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=21.89 E-value=1e+02 Score=18.58 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=14.4
Q ss_pred EEEEeCCCCceEEEEE
Q 032012 67 WISYNSSTHNPSVAFT 82 (149)
Q Consensus 67 wI~Yd~~~~~L~V~l~ 82 (149)
||.||...-.|-++|.
T Consensus 2 ki~YD~~~D~lyi~l~ 17 (50)
T PF10049_consen 2 KIEYDPEADALYIRLS 17 (50)
T ss_pred EeEEcCcCCEEEEEEC
Confidence 7999999999999993
No 20
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=20.56 E-value=1.7e+02 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=18.9
Q ss_pred ceeEEEEEEeCCCCceEEEEEc
Q 032012 62 RRNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 62 ~~~~awI~Yd~~~~~L~V~l~~ 83 (149)
+.+...+.|++...+|.|++-.
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~ 24 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIE 24 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEE
Confidence 4688889999999999999863
No 21
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=20.54 E-value=1.6e+02 Score=20.08 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=17.9
Q ss_pred eeEEEEEEeCCCCceEEEEEc
Q 032012 63 RNEAWISYNSSTHNPSVAFTG 83 (149)
Q Consensus 63 ~~~awI~Yd~~~~~L~V~l~~ 83 (149)
.+...+.|+.....|.|++-.
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~ 22 (123)
T cd08521 2 EIEFSLSYNYKTGSLEVHIKE 22 (123)
T ss_pred eEEEEEEEeCCCCEEEEEEEE
Confidence 477889999999999999864
Done!