BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032013
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
LP+L VFDLDYTLWPF+ + + + LYP +L L+ G
Sbjct: 3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
+ VA ASR+ A L + F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91
>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase
1 Of The Haloacid Dehalogenase Superfamily (Mgc5987)
Length = 187
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 21 LPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKGI 65
LP+L VFDLDYTLWPF+ + + + LYP +L+ L+ G+
Sbjct: 26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGV 85
Query: 66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
A ASR+ + A L + FV
Sbjct: 86 PGAAASRTSEIEGANQLLELFDLFRYFV 113
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
I LYP+ K LEALK +G +AV + P + + L GI +F
Sbjct: 111 NISRLYPNVKETLEALKAQGYILAVVTNKPTKHV-QPILTAFGIDHLF 157
>pdb|1I4J|A Chain A, Crystal Structure Of L22 Ribosomal Protein Mutant
pdb|1I4J|B Chain B, Crystal Structure Of L22 Ribosomal Protein Mutant
Length = 110
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 36 FYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV 69
Y + Y DE P + P A+G + +K++ H+ V
Sbjct: 69 LYVKAAYVDEGPAVLPRARGRADIIKKRTSHITV 102
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89
+IPY Y H K + ++E + A +P D K+ + GI
Sbjct: 92 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQ 136
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89
+IPY Y H K + ++E + A +P D K+ + GI
Sbjct: 92 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQ 136
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89
+IPY Y H K + ++E + A +P D K+ + GI
Sbjct: 66 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQ 110
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89
+IPY Y H K + ++E + A +P D K+ + GI
Sbjct: 94 KIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQ 138
>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 109
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK 63
+ R + ++ + P YE+++PYL P+ K ++ KE+
Sbjct: 62 IKRALDLNMRQQILPKEQWTKYEEDVPYLEPYLKEVIRERKER 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.147 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,734,112
Number of Sequences: 62578
Number of extensions: 125848
Number of successful extensions: 421
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 17
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)