Query 032013
Match_columns 149
No_of_seqs 241 out of 1563
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0637 Predicted phosphatase/ 99.9 2.6E-27 5.6E-32 183.6 9.0 97 45-142 83-187 (221)
2 TIGR01685 MDP-1 magnesium-depe 99.9 4.5E-22 9.8E-27 149.5 9.7 119 21-140 1-156 (174)
3 PLN03243 haloacid dehalogenase 99.9 5.8E-22 1.3E-26 157.2 9.8 94 46-140 107-208 (260)
4 PRK14988 GMP/IMP nucleotidase; 99.9 5.7E-22 1.2E-26 153.8 9.1 92 47-139 92-191 (224)
5 PLN02770 haloacid dehalogenase 99.9 5.6E-22 1.2E-26 155.7 9.0 94 46-140 106-207 (248)
6 PRK11587 putative phosphatase; 99.9 1.3E-21 2.7E-26 150.5 9.8 94 46-141 81-182 (218)
7 PRK13226 phosphoglycolate phos 99.9 2E-21 4.4E-26 150.7 9.0 93 47-140 94-194 (229)
8 TIGR02253 CTE7 HAD superfamily 99.9 2.6E-21 5.7E-26 148.0 9.2 95 47-142 93-196 (221)
9 PRK13288 pyrophosphatase PpaX; 99.9 2.8E-21 6E-26 147.8 9.2 94 46-140 80-181 (214)
10 PLN02575 haloacid dehalogenase 99.8 3.4E-21 7.3E-26 159.8 9.8 95 46-141 214-316 (381)
11 PRK10826 2-deoxyglucose-6-phos 99.8 4.4E-21 9.5E-26 147.6 8.9 96 46-142 90-193 (222)
12 TIGR01422 phosphonatase phosph 99.8 5.8E-21 1.3E-25 149.7 9.6 93 47-140 98-200 (253)
13 TIGR01428 HAD_type_II 2-haloal 99.8 4.4E-21 9.5E-26 145.0 8.4 94 47-143 91-194 (198)
14 KOG2914 Predicted haloacid-hal 99.8 3.5E-21 7.6E-26 149.5 7.6 96 44-142 88-197 (222)
15 TIGR01656 Histidinol-ppas hist 99.8 1.5E-20 3.3E-25 137.0 9.5 119 23-142 1-146 (147)
16 TIGR03351 PhnX-like phosphonat 99.8 1.9E-20 4.1E-25 143.5 10.2 93 47-140 86-190 (220)
17 TIGR01449 PGP_bact 2-phosphogl 99.8 1.1E-20 2.4E-25 143.7 8.3 93 47-140 84-184 (213)
18 PRK10725 fructose-1-P/6-phosph 99.8 1.8E-20 4E-25 140.1 7.8 92 47-141 87-186 (188)
19 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 3.7E-20 8.1E-25 131.9 8.6 118 23-142 1-132 (132)
20 PRK13478 phosphonoacetaldehyde 99.8 7E-20 1.5E-24 145.0 10.5 94 47-141 100-203 (267)
21 PRK06698 bifunctional 5'-methy 99.8 3.5E-20 7.5E-25 157.1 8.7 95 46-141 328-427 (459)
22 PRK13225 phosphoglycolate phos 99.8 6.7E-20 1.4E-24 146.4 9.0 94 46-140 140-238 (273)
23 PLN02940 riboflavin kinase 99.8 4.9E-20 1.1E-24 153.3 8.2 95 46-141 91-194 (382)
24 TIGR00213 GmhB_yaeD D,D-heptos 99.8 2.1E-19 4.6E-24 134.4 10.2 114 23-138 2-147 (176)
25 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 1.2E-19 2.5E-24 135.1 8.6 90 47-139 87-184 (185)
26 PRK06769 hypothetical protein; 99.8 2.1E-19 4.6E-24 134.5 9.6 119 21-142 3-138 (173)
27 TIGR01454 AHBA_synth_RP 3-amin 99.8 9.9E-20 2.1E-24 138.4 7.7 92 46-140 73-174 (205)
28 PRK08942 D,D-heptose 1,7-bisph 99.8 3.5E-19 7.5E-24 133.6 10.2 120 21-141 2-147 (181)
29 PRK10563 6-phosphogluconate ph 99.8 1.4E-19 3E-24 138.9 7.8 90 47-140 87-185 (221)
30 TIGR01990 bPGM beta-phosphoglu 99.8 1.8E-19 3.9E-24 134.1 8.0 89 47-140 86-184 (185)
31 COG0546 Gph Predicted phosphat 99.8 7.3E-19 1.6E-23 135.8 11.0 93 47-140 88-188 (220)
32 PRK13223 phosphoglycolate phos 99.8 7.8E-19 1.7E-23 139.9 9.8 92 47-139 100-199 (272)
33 PRK13222 phosphoglycolate phos 99.8 1.4E-18 3E-23 133.0 10.2 94 46-140 91-192 (226)
34 TIGR02252 DREG-2 REG-2-like, H 99.8 1.6E-18 3.4E-23 131.4 9.9 89 48-138 105-202 (203)
35 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 1.8E-18 3.8E-23 128.0 8.8 91 47-139 84-182 (183)
36 TIGR01993 Pyr-5-nucltdase pyri 99.8 2.1E-18 4.5E-23 129.1 8.6 89 47-139 83-183 (184)
37 PRK09449 dUMP phosphatase; Pro 99.8 1.9E-18 4.2E-23 132.7 8.1 94 47-142 94-197 (224)
38 TIGR02254 YjjG/YfnB HAD superf 99.8 2.6E-18 5.7E-23 131.2 8.1 92 47-142 96-199 (224)
39 PLN02779 haloacid dehalogenase 99.8 4.8E-18 1E-22 136.3 9.8 92 48-140 144-245 (286)
40 PRK09456 ?-D-glucose-1-phospha 99.7 1.8E-18 3.8E-23 131.3 6.5 92 48-142 84-186 (199)
41 PF13419 HAD_2: Haloacid dehal 99.7 1.9E-18 4E-23 125.6 6.4 94 45-139 74-175 (176)
42 TIGR02247 HAD-1A3-hyp Epoxide 99.7 3.3E-18 7.2E-23 130.4 7.8 97 46-142 92-197 (211)
43 PHA02597 30.2 hypothetical pro 99.7 5.4E-18 1.2E-22 128.1 8.7 94 46-141 72-174 (197)
44 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 1.2E-17 2.5E-22 119.5 9.4 107 23-132 1-126 (128)
45 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 2.2E-17 4.8E-22 123.1 10.9 116 22-138 13-159 (166)
46 TIGR01261 hisB_Nterm histidino 99.7 9.6E-18 2.1E-22 124.5 8.8 117 23-142 2-148 (161)
47 TIGR02726 phenyl_P_delta pheny 99.7 9.5E-18 2.1E-22 125.6 8.7 117 20-140 5-124 (169)
48 PLN02919 haloacid dehalogenase 99.7 9.5E-18 2.1E-22 154.2 9.9 92 49-141 162-262 (1057)
49 TIGR01548 HAD-SF-IA-hyp1 haloa 99.7 6.2E-17 1.4E-21 122.5 9.6 80 53-133 111-197 (197)
50 TIGR01670 YrbI-phosphatas 3-de 99.7 3.9E-17 8.4E-22 120.1 8.2 112 22-139 1-117 (154)
51 TIGR01668 YqeG_hyp_ppase HAD s 99.7 7.9E-17 1.7E-21 120.2 9.8 110 20-141 23-136 (170)
52 TIGR00338 serB phosphoserine p 99.7 4.8E-17 1E-21 124.5 8.6 120 19-139 11-193 (219)
53 TIGR01549 HAD-SF-IA-v1 haloaci 99.7 1.2E-16 2.7E-21 115.9 8.7 85 47-134 63-154 (154)
54 PLN02954 phosphoserine phospha 99.7 1.6E-16 3.5E-21 122.0 9.0 92 47-139 83-194 (224)
55 PHA02530 pseT polynucleotide k 99.7 2.9E-16 6.3E-21 125.7 10.1 118 21-140 157-295 (300)
56 PRK10748 flavin mononucleotide 99.7 9.8E-17 2.1E-21 125.2 7.2 89 47-142 112-209 (238)
57 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 1.9E-16 4.2E-21 119.0 8.5 93 47-140 79-189 (201)
58 PRK09484 3-deoxy-D-manno-octul 99.7 2.4E-16 5.1E-21 119.0 8.5 113 21-139 20-137 (183)
59 smart00577 CPDc catalytic doma 99.7 1.8E-16 3.9E-21 115.8 7.2 114 23-139 3-140 (148)
60 TIGR01672 AphA HAD superfamily 99.7 9.1E-16 2E-20 120.4 10.8 113 22-140 63-210 (237)
61 cd01427 HAD_like Haloacid deha 99.6 1.8E-15 3.9E-20 105.2 9.8 114 24-139 1-138 (139)
62 COG1011 Predicted hydrolase (H 99.6 1.1E-15 2.4E-20 117.0 8.3 94 47-142 98-200 (229)
63 PF12689 Acid_PPase: Acid Phos 99.6 7.6E-15 1.7E-19 109.8 10.5 121 21-142 2-152 (169)
64 TIGR01686 FkbH FkbH-like domai 99.6 7.8E-15 1.7E-19 119.4 10.4 114 21-136 2-125 (320)
65 TIGR01691 enolase-ppase 2,3-di 99.6 4.5E-15 9.7E-20 115.4 8.4 96 46-142 93-197 (220)
66 PRK09552 mtnX 2-hydroxy-3-keto 99.6 1.3E-14 2.7E-19 111.8 10.0 95 45-142 71-187 (219)
67 PRK05446 imidazole glycerol-ph 99.6 1.8E-14 3.9E-19 118.9 10.7 118 22-142 2-149 (354)
68 PRK13582 thrH phosphoserine ph 99.5 2.5E-14 5.4E-19 108.3 8.7 91 45-137 65-167 (205)
69 PLN02811 hydrolase 99.5 1.5E-14 3.3E-19 111.3 7.3 95 47-141 77-184 (220)
70 PRK11133 serB phosphoserine ph 99.5 2.6E-14 5.5E-19 116.8 8.6 120 19-139 107-289 (322)
71 PRK11009 aphA acid phosphatase 99.5 1.5E-13 3.3E-18 107.9 11.0 115 22-141 63-211 (237)
72 TIGR01493 HAD-SF-IA-v2 Haloaci 99.5 1E-14 2.2E-19 107.9 4.0 80 46-133 88-175 (175)
73 TIGR01489 DKMTPPase-SF 2,3-dik 99.4 4.4E-13 9.5E-18 99.6 8.0 87 47-134 71-182 (188)
74 TIGR03333 salvage_mtnX 2-hydro 99.4 1E-12 2.2E-17 101.0 8.7 96 46-143 68-184 (214)
75 COG2179 Predicted hydrolase of 99.4 1.4E-12 3E-17 96.7 8.1 113 20-144 26-141 (175)
76 TIGR01684 viral_ppase viral ph 99.4 1.8E-12 3.9E-17 104.2 7.9 66 22-95 126-192 (301)
77 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 4.4E-12 9.6E-17 99.2 8.6 101 21-134 7-115 (242)
78 KOG3085 Predicted hydrolase (H 99.3 3.8E-12 8.2E-17 99.7 7.1 93 46-142 111-214 (237)
79 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.3 2.6E-12 5.7E-17 97.0 5.4 92 48-140 87-197 (202)
80 KOG3109 Haloacid dehalogenase- 99.3 7.2E-12 1.6E-16 96.6 7.6 93 47-142 99-206 (244)
81 PTZ00445 p36-lilke protein; Pr 99.3 9.4E-12 2E-16 95.8 7.7 123 19-141 40-205 (219)
82 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.3 4E-11 8.7E-16 94.4 10.0 55 23-88 2-59 (249)
83 TIGR01663 PNK-3'Pase polynucle 99.2 4.1E-11 8.9E-16 103.5 9.9 113 21-136 167-306 (526)
84 TIGR02137 HSK-PSP phosphoserin 99.2 3.2E-11 6.9E-16 92.6 8.3 90 47-139 67-169 (203)
85 TIGR01488 HAD-SF-IB Haloacid D 99.2 2.6E-11 5.7E-16 89.4 6.9 88 45-133 70-177 (177)
86 TIGR01544 HAD-SF-IE haloacid d 99.2 1.2E-10 2.6E-15 93.3 10.5 88 45-133 118-230 (277)
87 PF13344 Hydrolase_6: Haloacid 99.2 1E-10 2.2E-15 80.5 8.7 81 25-117 1-83 (101)
88 PHA03398 viral phosphatase sup 99.2 4.1E-11 8.8E-16 96.5 7.6 68 20-95 126-194 (303)
89 PLN02645 phosphoglycolate phos 99.2 1.6E-10 3.4E-15 93.8 10.7 106 21-138 27-135 (311)
90 PRK15126 thiamin pyrimidine py 99.2 5.1E-11 1.1E-15 94.3 7.4 65 21-95 1-65 (272)
91 PRK10976 putative hydrolase; P 99.2 5.1E-11 1.1E-15 93.8 7.2 64 22-95 2-65 (266)
92 PRK01158 phosphoglycolate phos 99.2 5.9E-11 1.3E-15 91.3 7.2 64 22-95 3-66 (230)
93 PRK10530 pyridoxal phosphate ( 99.2 7.1E-11 1.5E-15 92.8 7.5 64 22-95 3-66 (272)
94 PRK00192 mannosyl-3-phosphogly 99.2 8.7E-11 1.9E-15 93.3 7.4 66 21-96 3-68 (273)
95 TIGR01487 SPP-like sucrose-pho 99.2 1.1E-10 2.3E-15 89.4 7.3 64 22-95 1-64 (215)
96 TIGR02251 HIF-SF_euk Dullard-l 99.1 6.5E-11 1.4E-15 87.8 4.8 114 23-141 2-139 (162)
97 COG0561 Cof Predicted hydrolas 99.1 1.8E-10 4E-15 90.6 7.3 66 21-96 2-67 (264)
98 COG0241 HisB Histidinol phosph 99.1 5.8E-10 1.3E-14 84.3 9.5 122 22-144 5-152 (181)
99 PRK12702 mannosyl-3-phosphogly 99.1 2.4E-10 5.2E-15 92.1 7.3 65 22-96 1-65 (302)
100 PRK08238 hypothetical protein; 99.1 5.5E-10 1.2E-14 95.7 9.9 113 23-137 11-162 (479)
101 PRK10513 sugar phosphate phosp 99.1 2.6E-10 5.7E-15 89.8 7.0 58 22-89 3-60 (270)
102 PRK03669 mannosyl-3-phosphogly 99.1 3.5E-10 7.6E-15 89.7 7.2 66 21-96 6-72 (271)
103 COG4996 Predicted phosphatase 99.1 9.7E-10 2.1E-14 78.9 7.9 101 23-125 1-127 (164)
104 COG1778 Low specificity phosph 99.0 4.4E-10 9.5E-15 82.7 5.7 114 20-138 6-123 (170)
105 TIGR02463 MPGP_rel mannosyl-3- 99.0 6.5E-10 1.4E-14 85.3 6.7 63 24-96 1-64 (221)
106 TIGR00099 Cof-subfamily Cof su 99.0 8.1E-10 1.7E-14 86.6 7.0 62 24-95 1-62 (256)
107 PF08282 Hydrolase_3: haloacid 99.0 7.3E-10 1.6E-14 84.6 6.6 63 25-97 1-63 (254)
108 TIGR02461 osmo_MPG_phos mannos 99.0 8.3E-10 1.8E-14 85.8 6.8 62 24-96 1-62 (225)
109 TIGR01482 SPP-subfamily Sucros 99.0 9.9E-10 2.1E-14 84.1 6.2 60 25-94 1-60 (225)
110 COG0560 SerB Phosphoserine pho 99.0 9.8E-10 2.1E-14 85.0 6.2 92 47-139 76-185 (212)
111 TIGR01452 PGP_euk phosphoglyco 99.0 7.8E-09 1.7E-13 82.5 10.7 102 22-137 2-107 (279)
112 TIGR01533 lipo_e_P4 5'-nucleot 99.0 6.8E-09 1.5E-13 82.9 10.1 113 19-133 72-207 (266)
113 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.9 3.3E-09 7.2E-14 83.9 8.1 80 22-109 1-82 (257)
114 PTZ00174 phosphomannomutase; P 98.9 2.2E-09 4.8E-14 84.3 6.6 54 22-85 5-58 (247)
115 TIGR01689 EcbF-BcbF capsule bi 98.9 5.4E-09 1.2E-13 74.8 8.0 72 23-101 2-89 (126)
116 PRK10444 UMP phosphatase; Prov 98.9 8E-09 1.7E-13 81.6 9.3 77 22-110 1-79 (248)
117 PF09419 PGP_phosphatase: Mito 98.9 1.2E-08 2.6E-13 76.4 9.7 114 19-143 38-166 (168)
118 PF00702 Hydrolase: haloacid d 98.9 7.9E-09 1.7E-13 77.8 7.9 84 47-134 126-215 (215)
119 TIGR01486 HAD-SF-IIB-MPGP mann 98.9 4.7E-09 1E-13 82.5 6.6 63 24-96 1-63 (256)
120 COG0647 NagD Predicted sugar p 98.8 1.4E-08 3E-13 81.3 7.9 86 20-117 6-94 (269)
121 PLN02887 hydrolase family prot 98.8 9.1E-09 2E-13 90.0 7.1 61 19-89 305-365 (580)
122 TIGR01525 ATPase-IB_hvy heavy 98.8 2.2E-08 4.8E-13 87.1 9.3 104 22-135 364-468 (556)
123 smart00775 LNS2 LNS2 domain. T 98.8 6.9E-08 1.5E-12 71.4 10.0 112 24-137 1-142 (157)
124 PRK14502 bifunctional mannosyl 98.8 1.9E-08 4.2E-13 88.9 7.6 68 19-96 413-480 (694)
125 TIGR01452 PGP_euk phosphoglyco 98.7 1.1E-08 2.3E-13 81.8 4.6 90 50-140 145-246 (279)
126 TIGR01484 HAD-SF-IIB HAD-super 98.7 3.3E-08 7.1E-13 74.8 6.8 55 24-87 1-55 (204)
127 TIGR01485 SPP_plant-cyano sucr 98.7 3.1E-08 6.7E-13 77.6 5.3 61 24-91 3-63 (249)
128 PRK11590 hypothetical protein; 98.7 1.3E-07 2.9E-12 72.5 8.2 91 48-139 95-201 (211)
129 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.7 2E-08 4.4E-13 79.4 3.8 92 49-141 121-224 (257)
130 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.6 2.5E-08 5.3E-13 78.0 3.3 89 50-140 140-240 (242)
131 PLN02423 phosphomannomutase 98.6 8.9E-08 1.9E-12 75.3 6.3 56 19-85 3-59 (245)
132 PF08645 PNK3P: Polynucleotide 98.6 5E-07 1.1E-11 66.9 9.9 114 23-137 1-152 (159)
133 TIGR01675 plant-AP plant acid 98.6 1.9E-07 4.1E-12 73.1 7.7 90 2-91 54-165 (229)
134 TIGR01511 ATPase-IB1_Cu copper 98.6 2.2E-07 4.8E-12 81.1 8.6 104 22-136 385-488 (562)
135 TIGR01512 ATPase-IB2_Cd heavy 98.6 2.5E-07 5.4E-12 80.3 8.9 102 24-135 344-446 (536)
136 PRK10187 trehalose-6-phosphate 98.6 1.2E-07 2.5E-12 75.5 5.9 61 23-88 15-76 (266)
137 TIGR02250 FCP1_euk FCP1-like p 98.6 3.2E-07 6.9E-12 67.8 7.5 102 22-127 6-140 (156)
138 TIGR01456 CECR5 HAD-superfamil 98.5 7.4E-07 1.6E-11 72.7 9.3 100 24-139 2-109 (321)
139 TIGR01460 HAD-SF-IIA Haloacid 98.5 6.1E-07 1.3E-11 70.1 8.3 73 25-110 1-77 (236)
140 TIGR01545 YfhB_g-proteo haloac 98.4 1.3E-06 2.8E-11 67.3 8.4 91 48-139 94-200 (210)
141 TIGR01680 Veg_Stor_Prot vegeta 98.4 1.1E-06 2.4E-11 70.3 8.2 90 2-91 80-190 (275)
142 TIGR02471 sucr_syn_bact_C sucr 98.4 2E-07 4.4E-12 72.3 3.8 61 24-96 1-63 (236)
143 COG3769 Predicted hydrolase (H 98.4 6.3E-07 1.4E-11 69.7 6.3 60 20-90 5-64 (274)
144 KOG2882 p-Nitrophenyl phosphat 98.4 4.6E-06 9.9E-11 67.3 10.3 81 21-112 21-103 (306)
145 PF06941 NT5C: 5' nucleotidase 98.3 3.1E-07 6.7E-12 69.4 2.0 86 45-142 70-163 (191)
146 PF05152 DUF705: Protein of un 98.3 2.8E-06 6E-11 68.2 7.4 70 19-95 119-188 (297)
147 PF03767 Acid_phosphat_B: HAD 98.3 6.4E-07 1.4E-11 70.0 3.4 70 20-90 70-159 (229)
148 PF03031 NIF: NLI interacting 98.3 2.1E-06 4.5E-11 62.7 5.5 98 23-126 1-118 (159)
149 PLN03017 trehalose-phosphatase 98.2 3E-06 6.4E-11 70.5 7.0 56 22-83 111-166 (366)
150 PRK10671 copA copper exporting 98.2 7.9E-06 1.7E-10 74.4 9.6 105 22-136 630-734 (834)
151 COG4229 Predicted enolase-phos 98.2 5.4E-06 1.2E-10 62.9 7.0 95 47-142 102-205 (229)
152 TIGR02245 HAD_IIID1 HAD-superf 98.2 1.5E-05 3.2E-10 61.1 9.0 103 20-126 19-141 (195)
153 KOG4549 Magnesium-dependent ph 98.2 4.2E-06 9E-11 59.8 5.4 70 22-91 18-87 (144)
154 TIGR02244 HAD-IG-Ncltidse HAD 98.2 4.7E-06 1E-10 68.9 6.2 95 46-141 182-323 (343)
155 PLN02151 trehalose-phosphatase 98.1 7.2E-06 1.6E-10 68.0 6.3 57 22-84 98-154 (354)
156 PRK14501 putative bifunctional 98.1 7.7E-06 1.7E-10 73.4 6.1 62 22-88 492-554 (726)
157 PF06888 Put_Phosphatase: Puta 98.0 8.4E-06 1.8E-10 64.1 5.1 50 45-95 68-119 (234)
158 PLN02580 trehalose-phosphatase 98.0 1.5E-05 3.2E-10 66.8 6.7 58 22-85 119-176 (384)
159 KOG1615 Phosphoserine phosphat 98.0 1.6E-05 3.5E-10 60.8 5.5 85 44-129 84-188 (227)
160 PLN02645 phosphoglycolate phos 98.0 7.3E-06 1.6E-10 66.6 3.9 89 52-140 174-274 (311)
161 TIGR00685 T6PP trehalose-phosp 97.9 1.8E-05 3.9E-10 62.0 5.1 52 22-77 3-55 (244)
162 PF13242 Hydrolase_like: HAD-h 97.9 1.4E-05 3E-10 51.6 3.6 45 97-141 2-49 (75)
163 PLN02205 alpha,alpha-trehalose 97.9 2.4E-05 5.2E-10 71.5 6.3 59 21-86 595-654 (854)
164 PF08235 LNS2: LNS2 (Lipin/Ned 97.9 3.9E-05 8.4E-10 56.9 6.2 109 25-136 2-141 (157)
165 PLN02382 probable sucrose-phos 97.9 3.3E-05 7.2E-10 65.3 6.1 62 22-91 8-71 (413)
166 COG1877 OtsB Trehalose-6-phosp 97.8 6.5E-05 1.4E-09 60.1 6.0 64 19-87 15-79 (266)
167 COG2503 Predicted secreted aci 97.6 0.00016 3.5E-09 57.0 6.1 72 22-93 79-170 (274)
168 COG3700 AphA Acid phosphatase 97.6 0.00016 3.5E-09 54.8 5.9 120 19-140 60-210 (237)
169 KOG3040 Predicted sugar phosph 97.6 0.00059 1.3E-08 53.0 8.8 77 21-109 6-84 (262)
170 PRK11033 zntA zinc/cadmium/mer 97.5 0.00077 1.7E-08 60.9 9.6 102 22-135 548-649 (741)
171 PF02358 Trehalose_PPase: Treh 97.4 0.00012 2.6E-09 56.9 3.4 53 26-83 1-54 (235)
172 COG4359 Uncharacterized conser 97.4 0.0003 6.6E-09 53.5 5.2 42 45-87 70-111 (220)
173 PF05116 S6PP: Sucrose-6F-phos 97.4 0.00014 3.1E-09 57.2 3.1 58 22-89 2-59 (247)
174 PLN03064 alpha,alpha-trehalose 97.3 0.00059 1.3E-08 62.9 6.1 65 22-87 591-661 (934)
175 KOG3120 Predicted haloacid deh 97.2 0.00043 9.3E-09 54.0 4.1 50 45-95 81-131 (256)
176 PRK10444 UMP phosphatase; Prov 97.2 0.0019 4.2E-08 50.9 7.8 44 97-140 172-218 (248)
177 PLN03063 alpha,alpha-trehalose 97.2 0.00075 1.6E-08 61.5 6.0 64 22-87 507-571 (797)
178 TIGR01460 HAD-SF-IIA Haloacid 97.1 0.0025 5.4E-08 49.7 7.8 44 97-140 186-233 (236)
179 COG3882 FkbH Predicted enzyme 97.1 0.0026 5.5E-08 54.8 8.1 115 17-134 217-347 (574)
180 PF12710 HAD: haloacid dehalog 97.1 0.0015 3.3E-08 48.2 5.7 79 50-131 87-192 (192)
181 TIGR01522 ATPase-IIA2_Ca golgi 97.0 0.0035 7.6E-08 57.7 8.1 87 48-135 528-638 (884)
182 KOG1618 Predicted phosphatase 96.9 0.0024 5.3E-08 52.4 6.1 56 23-89 36-99 (389)
183 PRK10530 pyridoxal phosphate ( 96.9 0.0022 4.7E-08 50.2 5.7 88 50-137 139-238 (272)
184 COG5663 Uncharacterized conser 96.7 0.002 4.3E-08 48.4 3.5 85 48-140 72-160 (194)
185 KOG3189 Phosphomannomutase [Li 96.7 0.0039 8.5E-08 48.1 5.2 44 24-77 13-56 (252)
186 KOG2630 Enolase-phosphatase E- 96.4 0.014 3E-07 45.9 6.7 92 48-142 123-225 (254)
187 PF06437 ISN1: IMP-specific 5' 95.9 0.051 1.1E-06 45.7 8.1 64 21-92 146-210 (408)
188 PF11019 DUF2608: Protein of u 95.8 0.13 2.8E-06 40.8 10.0 84 48-133 81-197 (252)
189 KOG2116 Protein involved in pl 95.8 0.012 2.6E-07 52.2 4.1 64 23-90 531-602 (738)
190 COG4087 Soluble P-type ATPase 95.7 0.062 1.3E-06 39.0 6.8 97 23-134 15-113 (152)
191 TIGR01497 kdpB K+-transporting 95.6 0.11 2.3E-06 46.9 9.5 101 22-134 426-528 (675)
192 TIGR01116 ATPase-IIA1_Ca sarco 95.1 0.1 2.3E-06 48.4 8.1 87 48-135 537-651 (917)
193 PF04312 DUF460: Protein of un 95.1 0.11 2.3E-06 37.7 6.4 58 23-90 44-103 (138)
194 KOG2134 Polynucleotide kinase 94.8 0.034 7.4E-07 46.7 3.7 51 22-74 75-130 (422)
195 COG2217 ZntA Cation transport 94.5 0.073 1.6E-06 48.2 5.4 94 24-128 519-613 (713)
196 PRK14010 potassium-transportin 93.7 0.11 2.3E-06 46.9 4.8 44 48-92 441-484 (673)
197 PRK00192 mannosyl-3-phosphogly 93.7 0.19 4E-06 39.8 5.7 78 61-139 145-232 (273)
198 PRK01122 potassium-transportin 93.5 0.12 2.6E-06 46.6 4.8 63 23-92 426-488 (679)
199 PF00702 Hydrolase: haloacid d 93.2 0.049 1.1E-06 40.5 1.6 18 22-39 1-18 (215)
200 TIGR02463 MPGP_rel mannosyl-3- 93.2 0.19 4.1E-06 38.2 4.9 69 70-139 145-220 (221)
201 PF05761 5_nucleotid: 5' nucle 92.6 0.16 3.6E-06 43.6 4.1 55 47-102 182-245 (448)
202 COG5083 SMP2 Uncharacterized p 92.6 0.12 2.7E-06 44.3 3.2 53 20-76 373-431 (580)
203 PF12710 HAD: haloacid dehalog 91.7 0.095 2.1E-06 38.4 1.5 13 25-37 1-13 (192)
204 TIGR01482 SPP-subfamily Sucros 91.7 0.6 1.3E-05 35.3 6.0 73 66-139 109-190 (225)
205 TIGR01647 ATPase-IIIA_H plasma 91.6 0.34 7.3E-06 44.1 5.2 42 48-90 442-483 (755)
206 PLN02499 glycerol-3-phosphate 91.4 0.45 9.7E-06 41.4 5.4 35 55-91 100-135 (498)
207 COG0647 NagD Predicted sugar p 91.2 2.2 4.9E-05 34.3 8.9 81 52-140 137-234 (269)
208 COG4850 Uncharacterized conser 91.2 0.53 1.2E-05 39.0 5.4 54 24-77 163-226 (373)
209 TIGR01106 ATPase-IIC_X-K sodiu 91.1 0.33 7.2E-06 45.6 4.7 41 48-89 568-608 (997)
210 KOG2882 p-Nitrophenyl phosphat 89.9 1 2.2E-05 36.8 5.9 102 19-140 151-268 (306)
211 PRK01158 phosphoglycolate phos 88.6 1 2.2E-05 34.1 5.0 39 101-139 158-198 (230)
212 TIGR01456 CECR5 HAD-superfamil 88.6 0.39 8.4E-06 39.2 2.7 46 96-141 230-291 (321)
213 PRK10517 magnesium-transportin 88.6 0.74 1.6E-05 42.9 4.8 41 48-89 550-590 (902)
214 TIGR01517 ATPase-IIB_Ca plasma 88.5 0.85 1.8E-05 42.6 5.2 41 48-89 579-619 (941)
215 PRK15122 magnesium-transportin 88.0 0.78 1.7E-05 42.7 4.6 41 48-89 550-590 (903)
216 PF02590 SPOUT_MTase: Predicte 87.9 3 6.6E-05 30.7 6.9 87 8-111 54-141 (155)
217 TIGR01523 ATPase-IID_K-Na pota 87.8 0.92 2E-05 43.0 5.0 41 48-89 646-686 (1053)
218 TIGR01657 P-ATPase-V P-type AT 87.5 1 2.2E-05 42.6 5.1 41 48-89 656-696 (1054)
219 TIGR01524 ATPase-IIIB_Mg magne 87.5 2.8 6.1E-05 38.9 7.9 41 48-89 515-555 (867)
220 KOG0207 Cation transport ATPas 87.5 4 8.7E-05 38.1 8.6 80 22-111 703-782 (951)
221 PRK00103 rRNA large subunit me 87.4 5.8 0.00013 29.3 8.1 88 7-111 53-141 (157)
222 TIGR01494 ATPase_P-type ATPase 87.2 3.9 8.5E-05 35.2 8.2 100 22-134 327-426 (499)
223 COG1576 Uncharacterized conser 87.1 5.9 0.00013 29.3 7.9 88 7-111 53-140 (155)
224 KOG2961 Predicted hydrolase (H 86.7 1.7 3.6E-05 32.5 4.8 111 21-141 42-167 (190)
225 KOG1605 TFIIF-interacting CTD 86.7 0.27 5.9E-06 39.4 0.8 103 20-125 87-212 (262)
226 PF06189 5-nucleotidase: 5'-nu 86.6 4.6 9.9E-05 32.4 7.6 103 22-131 122-249 (264)
227 TIGR01487 SPP-like sucrose-pho 86.0 1.1 2.4E-05 33.8 3.8 73 66-139 109-188 (215)
228 TIGR02495 NrdG2 anaerobic ribo 85.9 5.5 0.00012 29.4 7.5 83 48-138 74-157 (191)
229 PRK13762 tRNA-modifying enzyme 85.8 2.4 5.2E-05 34.8 5.9 83 48-137 142-224 (322)
230 COG0474 MgtA Cation transport 84.6 1.9 4E-05 40.3 5.2 43 48-91 547-589 (917)
231 KOG3128 Uncharacterized conser 84.5 1.4 2.9E-05 35.5 3.6 40 46-86 136-175 (298)
232 COG2216 KdpB High-affinity K+ 84.0 1.8 3.9E-05 38.2 4.5 55 48-108 447-501 (681)
233 PF06258 Mito_fiss_Elm1: Mitoc 82.4 9.4 0.0002 31.2 8.0 79 58-141 176-256 (311)
234 TIGR02468 sucrsPsyn_pln sucros 82.4 2.6 5.7E-05 40.0 5.2 52 23-89 771-828 (1050)
235 KOG0202 Ca2+ transporting ATPa 81.0 3.4 7.4E-05 38.3 5.2 43 48-91 584-626 (972)
236 TIGR00246 tRNA_RlmH_YbeA rRNA 79.9 17 0.00036 26.7 7.8 86 8-111 53-138 (153)
237 COG0731 Fe-S oxidoreductases [ 79.7 6.5 0.00014 32.1 6.1 36 48-84 92-128 (296)
238 KOG3040 Predicted sugar phosph 79.6 2.7 5.8E-05 33.0 3.6 90 50-141 124-226 (262)
239 TIGR01652 ATPase-Plipid phosph 78.9 2.9 6.2E-05 39.6 4.3 42 48-90 631-672 (1057)
240 PF05822 UMPH-1: Pyrimidine 5' 78.9 2.1 4.5E-05 34.0 2.9 42 46-88 88-129 (246)
241 PLN02177 glycerol-3-phosphate 78.6 1.2 2.6E-05 38.9 1.6 35 55-91 114-149 (497)
242 KOG2470 Similar to IMP-GMP spe 78.1 1.4 3E-05 37.2 1.7 46 49-95 241-289 (510)
243 PRK13361 molybdenum cofactor b 77.0 12 0.00026 30.5 7.0 80 48-135 73-154 (329)
244 PRK05301 pyrroloquinoline quin 76.9 13 0.00028 30.7 7.3 43 47-90 73-117 (378)
245 TIGR03470 HpnH hopanoid biosyn 75.5 7 0.00015 31.8 5.2 30 47-76 83-112 (318)
246 COG2433 Uncharacterized conser 75.4 8.1 0.00018 34.6 5.8 57 24-90 257-315 (652)
247 TIGR02109 PQQ_syn_pqqE coenzym 75.3 14 0.00031 30.2 7.0 42 48-90 65-108 (358)
248 KOG2832 TFIIF-interacting CTD 75.1 7.8 0.00017 32.7 5.3 69 22-93 189-257 (393)
249 TIGR03278 methan_mark_10 putat 75.0 18 0.00038 30.8 7.6 45 45-90 83-131 (404)
250 TIGR02886 spore_II_AA anti-sig 74.1 22 0.00048 23.5 6.7 59 21-92 38-96 (106)
251 TIGR02471 sucr_syn_bact_C sucr 72.4 9.1 0.0002 29.3 5.0 41 99-139 158-200 (236)
252 KOG0204 Calcium transporting A 72.1 6.8 0.00015 36.6 4.6 43 47-90 646-688 (1034)
253 TIGR00099 Cof-subfamily Cof su 71.8 2.3 4.9E-05 33.0 1.5 30 110-139 200-229 (256)
254 PLN03190 aminophospholipid tra 71.1 7.6 0.00016 37.5 5.0 41 48-89 726-766 (1178)
255 TIGR02826 RNR_activ_nrdG3 anae 69.7 12 0.00025 27.2 4.7 37 49-85 73-109 (147)
256 cd07043 STAS_anti-anti-sigma_f 69.4 20 0.00042 22.9 5.5 59 22-93 38-96 (99)
257 TIGR00236 wecB UDP-N-acetylglu 68.7 50 0.0011 26.7 8.8 85 53-138 16-114 (365)
258 TIGR02493 PFLA pyruvate format 68.0 29 0.00064 26.4 7.0 77 49-137 78-159 (235)
259 cd03812 GT1_CapH_like This fam 67.9 26 0.00056 27.6 6.8 84 53-141 210-297 (358)
260 cd05008 SIS_GlmS_GlmD_1 SIS (S 67.4 11 0.00023 25.7 4.0 28 50-77 59-86 (126)
261 TIGR01485 SPP_plant-cyano sucr 66.8 7.9 0.00017 30.0 3.6 44 97-140 164-209 (249)
262 PF01740 STAS: STAS domain; I 66.1 4.5 9.8E-05 27.3 1.9 60 21-93 47-106 (117)
263 TIGR01484 HAD-SF-IIB HAD-super 65.8 8.4 0.00018 28.6 3.4 40 99-138 162-203 (204)
264 COG0263 ProB Glutamate 5-kinas 65.2 13 0.00029 31.2 4.7 38 56-94 222-259 (369)
265 cd05014 SIS_Kpsf KpsF-like pro 64.4 11 0.00024 25.7 3.6 29 49-77 59-87 (128)
266 TIGR01691 enolase-ppase 2,3-di 63.4 4.6 9.9E-05 31.3 1.6 26 115-140 92-117 (220)
267 PF00534 Glycos_transf_1: Glyc 63.3 17 0.00037 25.7 4.6 88 51-141 31-123 (172)
268 COG2044 Predicted peroxiredoxi 63.1 17 0.00037 25.8 4.3 49 24-74 37-85 (120)
269 TIGR02461 osmo_MPG_phos mannos 63.0 7.5 0.00016 30.0 2.7 27 113-139 198-224 (225)
270 smart00540 LEM in nuclear memb 62.9 6.5 0.00014 22.9 1.8 32 54-86 9-40 (44)
271 cd03801 GT1_YqgM_like This fam 62.3 29 0.00062 26.4 6.0 86 53-141 217-306 (374)
272 COG4502 5'(3')-deoxyribonucleo 62.2 7.5 0.00016 28.7 2.4 28 45-73 65-92 (180)
273 TIGR00377 ant_ant_sig anti-ant 62.1 42 0.00091 22.0 6.9 60 21-93 42-101 (108)
274 PF04131 NanE: Putative N-acet 61.0 39 0.00084 25.9 6.2 88 51-142 79-174 (192)
275 cd05710 SIS_1 A subgroup of th 59.7 18 0.00038 24.9 4.0 28 50-77 60-87 (120)
276 PF01976 DUF116: Protein of un 59.1 27 0.00058 25.8 5.0 33 52-87 74-106 (158)
277 cd02071 MM_CoA_mut_B12_BD meth 59.1 25 0.00055 24.3 4.7 43 51-94 65-109 (122)
278 PF01380 SIS: SIS domain SIS d 58.4 22 0.00048 24.0 4.3 27 51-77 67-93 (131)
279 TIGR02668 moaA_archaeal probab 58.3 58 0.0013 25.9 7.3 80 48-136 68-149 (302)
280 COG3660 Predicted nucleoside-d 58.3 52 0.0011 26.9 6.8 81 57-141 190-272 (329)
281 cd03811 GT1_WabH_like This fam 58.1 46 0.001 25.2 6.5 84 52-140 206-293 (353)
282 PF04007 DUF354: Protein of un 57.9 59 0.0013 26.9 7.3 38 53-92 16-53 (335)
283 cd07041 STAS_RsbR_RsbS_like Su 57.6 33 0.00071 22.7 5.0 57 21-90 40-96 (109)
284 cd03799 GT1_amsK_like This is 56.8 51 0.0011 25.7 6.6 89 51-140 195-291 (355)
285 TIGR03127 RuMP_HxlB 6-phospho 56.2 20 0.00043 26.2 4.0 29 49-77 84-112 (179)
286 cd01335 Radical_SAM Radical SA 55.6 44 0.00096 23.5 5.7 38 52-90 60-101 (204)
287 TIGR03471 HpnJ hopanoid biosyn 55.4 44 0.00095 28.6 6.4 111 4-138 229-340 (472)
288 PLN02951 Molybderin biosynthes 55.3 63 0.0014 27.0 7.2 80 48-136 118-200 (373)
289 TIGR03365 Bsubt_queE 7-cyano-7 54.4 15 0.00033 28.6 3.2 30 48-77 84-113 (238)
290 TIGR00815 sulP high affinity s 54.0 44 0.00096 29.4 6.4 62 22-97 494-556 (563)
291 PF00578 AhpC-TSA: AhpC/TSA fa 53.6 30 0.00064 23.1 4.2 40 49-89 44-83 (124)
292 cd03798 GT1_wlbH_like This fam 53.3 55 0.0012 25.0 6.2 86 52-141 219-309 (377)
293 TIGR00262 trpA tryptophan synt 53.1 1E+02 0.0022 24.4 7.7 91 49-142 125-228 (256)
294 cd05844 GT1_like_7 Glycosyltra 52.9 36 0.00077 27.0 5.2 90 51-141 204-301 (367)
295 cd05013 SIS_RpiR RpiR-like pro 52.7 25 0.00055 23.7 3.8 27 51-77 74-100 (139)
296 TIGR01290 nifB nitrogenase cof 52.4 23 0.0005 30.4 4.2 83 52-139 96-192 (442)
297 PF00072 Response_reg: Respons 52.1 61 0.0013 20.8 5.6 54 22-93 44-99 (112)
298 cd05017 SIS_PGI_PMI_1 The memb 51.6 22 0.00047 24.3 3.3 36 50-88 56-91 (119)
299 cd05006 SIS_GmhA Phosphoheptos 51.4 21 0.00045 26.2 3.4 29 49-77 113-141 (177)
300 TIGR03568 NeuC_NnaA UDP-N-acet 51.0 85 0.0018 25.9 7.3 84 51-141 220-307 (365)
301 PF13911 AhpC-TSA_2: AhpC/TSA 50.8 60 0.0013 21.8 5.4 53 55-114 4-56 (115)
302 PLN02389 biotin synthase 50.7 27 0.00058 29.4 4.2 79 49-137 151-229 (379)
303 KOG2469 IMP-GMP specific 5'-nu 50.7 15 0.00033 31.3 2.8 40 18-66 23-64 (424)
304 PRK10076 pyruvate formate lyas 50.2 29 0.00063 26.7 4.1 29 48-76 50-79 (213)
305 PRK13937 phosphoheptose isomer 50.1 28 0.00061 26.0 3.9 28 50-77 119-146 (188)
306 COG5190 FCP1 TFIIF-interacting 50.0 35 0.00075 29.0 4.8 104 19-125 209-332 (390)
307 KOG0203 Na+/K+ ATPase, alpha s 49.8 41 0.00088 31.7 5.4 68 20-88 560-629 (1019)
308 cd06591 GH31_xylosidase_XylS X 49.7 69 0.0015 26.0 6.4 47 22-71 40-86 (319)
309 cd06539 CIDE_N_A CIDE_N domain 49.4 24 0.00052 23.1 3.0 33 3-36 22-54 (78)
310 cd06589 GH31 The enzymes of gl 49.3 83 0.0018 24.7 6.7 49 22-75 40-90 (265)
311 PF04413 Glycos_transf_N: 3-De 49.3 42 0.00091 25.1 4.8 84 51-140 35-124 (186)
312 COG1433 Uncharacterized conser 49.2 83 0.0018 22.2 6.0 70 18-91 20-90 (121)
313 TIGR00441 gmhA phosphoheptose 48.7 27 0.00059 25.1 3.6 28 50-77 92-119 (154)
314 cd06844 STAS Sulphate Transpor 48.6 44 0.00095 21.9 4.4 58 21-91 38-95 (100)
315 cd06603 GH31_GANC_GANAB_alpha 48.3 59 0.0013 26.6 5.9 46 22-72 40-85 (339)
316 PF02142 MGS: MGS-like domain 48.0 28 0.0006 22.9 3.3 32 52-89 1-32 (95)
317 cd07038 TPP_PYR_PDC_IPDC_like 47.6 50 0.0011 24.0 4.9 82 56-140 3-91 (162)
318 PRK15427 colanic acid biosynth 46.8 51 0.0011 27.5 5.4 87 52-140 239-334 (406)
319 PF02254 TrkA_N: TrkA-N domain 46.6 84 0.0018 20.8 7.1 58 82-140 54-115 (116)
320 PF05761 5_nucleotid: 5' nucle 46.3 13 0.00029 32.0 1.8 43 19-70 9-54 (448)
321 cd01615 CIDE_N CIDE_N domain, 46.1 30 0.00065 22.6 3.1 33 3-36 22-54 (78)
322 cd03816 GT1_ALG1_like This fam 46.1 62 0.0013 27.0 5.8 87 53-141 250-348 (415)
323 cd05005 SIS_PHI Hexulose-6-pho 45.8 35 0.00076 25.0 3.9 29 49-77 87-115 (179)
324 cd04795 SIS SIS domain. SIS (S 45.6 28 0.00061 21.7 3.0 22 50-71 60-81 (87)
325 PF04055 Radical_SAM: Radical 45.2 31 0.00068 23.6 3.4 78 51-137 60-143 (166)
326 PF03332 PMM: Eukaryotic phosp 44.8 36 0.00077 26.7 3.8 24 53-77 1-24 (220)
327 cd03174 DRE_TIM_metallolyase D 44.8 33 0.00072 26.4 3.8 38 48-88 48-88 (265)
328 cd04951 GT1_WbdM_like This fam 44.7 80 0.0017 24.6 6.0 85 52-141 205-293 (360)
329 smart00266 CAD Domains present 44.7 34 0.00073 22.2 3.1 33 3-36 20-52 (74)
330 COG1663 LpxK Tetraacyldisaccha 44.4 58 0.0012 27.2 5.2 82 50-140 63-147 (336)
331 TIGR02244 HAD-IG-Ncltidse HAD 44.1 13 0.00029 30.9 1.4 17 20-36 10-26 (343)
332 COG0001 HemL Glutamate-1-semia 44.0 38 0.00081 29.2 4.1 103 23-127 44-148 (432)
333 COG4213 XylF ABC-type xylose t 43.9 9.6 0.00021 31.6 0.6 21 125-145 97-117 (341)
334 cd06592 GH31_glucosidase_KIAA1 43.7 1.2E+02 0.0025 24.5 6.9 47 22-73 46-92 (303)
335 cd07042 STAS_SulP_like_sulfate 43.6 62 0.0013 20.8 4.5 57 22-92 41-98 (107)
336 PLN02275 transferase, transfer 43.6 1.1E+02 0.0024 24.9 6.9 76 64-141 261-340 (371)
337 COG2896 MoaA Molybdenum cofact 43.6 96 0.0021 25.7 6.4 80 47-136 70-152 (322)
338 TIGR00640 acid_CoA_mut_C methy 43.2 60 0.0013 23.0 4.6 41 52-93 69-111 (132)
339 PF03102 NeuB: NeuB family; I 43.0 60 0.0013 25.6 5.0 82 53-138 102-198 (241)
340 cd06595 GH31_xylosidase_XylS-l 42.8 1.1E+02 0.0024 24.4 6.6 49 22-73 41-96 (292)
341 cd06537 CIDE_N_B CIDE_N domain 42.8 35 0.00076 22.5 3.0 32 3-36 22-53 (81)
342 PRK00994 F420-dependent methyl 42.5 43 0.00094 26.8 4.0 40 49-89 72-111 (277)
343 COG1180 PflA Pyruvate-formate 42.0 24 0.00052 28.0 2.6 43 28-77 83-125 (260)
344 PF05240 APOBEC_C: APOBEC-like 41.5 34 0.00074 20.8 2.6 24 51-74 2-25 (55)
345 COG3707 AmiR Response regulato 41.1 1.4E+02 0.003 23.0 6.5 83 57-143 22-108 (194)
346 PRK15108 biotin synthase; Prov 41.1 52 0.0011 27.2 4.5 78 49-137 109-187 (345)
347 PF07287 DUF1446: Protein of u 40.9 94 0.002 26.1 6.0 91 50-143 57-169 (362)
348 COG1225 Bcp Peroxiredoxin [Pos 40.6 34 0.00073 25.4 3.0 35 22-63 121-155 (157)
349 PRK11475 DNA-binding transcrip 40.5 1.6E+02 0.0035 22.3 7.5 51 54-109 56-108 (207)
350 cd03820 GT1_amsD_like This fam 40.4 1.1E+02 0.0024 23.1 6.1 85 52-141 195-283 (348)
351 cd06601 GH31_lyase_GLase GLase 40.2 1.3E+02 0.0029 24.7 6.8 46 22-72 40-85 (332)
352 PRK00414 gmhA phosphoheptose i 40.1 50 0.0011 24.8 4.0 28 50-77 124-151 (192)
353 PRK13938 phosphoheptose isomer 39.8 49 0.0011 25.2 3.9 28 50-77 126-153 (196)
354 PF13580 SIS_2: SIS domain; PD 39.8 31 0.00066 24.4 2.6 22 51-72 117-138 (138)
355 cd06602 GH31_MGAM_SI_GAA This 38.9 1.1E+02 0.0025 25.1 6.2 46 22-72 40-87 (339)
356 PF10623 PilI: Plasmid conjuga 38.5 50 0.0011 21.7 3.2 44 64-124 8-53 (83)
357 cd03012 TlpA_like_DipZ_like Tl 38.4 37 0.00081 23.1 2.8 40 49-89 41-86 (126)
358 PRK01045 ispH 4-hydroxy-3-meth 38.3 55 0.0012 26.7 4.2 65 55-122 79-143 (298)
359 cd06600 GH31_MGAM-like This fa 38.0 1.2E+02 0.0026 24.6 6.1 45 22-71 40-84 (317)
360 PRK07094 biotin synthase; Prov 37.9 61 0.0013 26.1 4.4 78 51-137 103-181 (323)
361 cd03808 GT1_cap1E_like This fa 37.7 1.3E+02 0.0028 22.8 6.1 83 53-140 206-293 (359)
362 cd06536 CIDE_N_ICAD CIDE_N dom 37.6 50 0.0011 21.7 3.1 34 3-36 22-56 (80)
363 PF01993 MTD: methylene-5,6,7, 37.5 43 0.00092 26.9 3.3 40 49-89 71-110 (276)
364 cd03817 GT1_UGDG_like This fam 37.4 1.2E+02 0.0027 23.2 6.0 87 52-141 219-309 (374)
365 smart00851 MGS MGS-like domain 37.0 81 0.0018 20.3 4.2 31 53-89 2-32 (90)
366 cd01421 IMPCH Inosine monophos 36.9 85 0.0018 23.9 4.7 33 50-88 10-42 (187)
367 cd03018 PRX_AhpE_like Peroxire 36.8 86 0.0019 21.6 4.6 40 49-89 47-86 (149)
368 KOG0323 TFIIF-interacting CTD 36.7 65 0.0014 29.2 4.7 46 46-93 199-245 (635)
369 TIGR00423 radical SAM domain p 36.7 49 0.0011 26.7 3.7 41 27-68 260-300 (309)
370 PRK12360 4-hydroxy-3-methylbut 36.5 53 0.0012 26.6 3.8 65 55-122 82-146 (281)
371 cd04949 GT1_gtfA_like This fam 36.4 1.4E+02 0.0031 23.8 6.4 85 52-141 221-309 (372)
372 PRK14558 pyrH uridylate kinase 36.4 98 0.0021 23.7 5.2 29 55-84 192-220 (231)
373 PRK11145 pflA pyruvate formate 36.4 56 0.0012 25.1 3.8 27 49-75 83-110 (246)
374 COG4030 Uncharacterized protei 36.3 46 0.001 26.7 3.3 40 47-88 82-121 (315)
375 cd03807 GT1_WbnK_like This fam 36.1 1.6E+02 0.0034 22.4 6.4 84 53-141 211-299 (365)
376 PRK04531 acetylglutamate kinas 35.7 85 0.0019 26.6 5.1 58 22-93 36-93 (398)
377 PF12261 T_hemolysin: Thermost 35.6 74 0.0016 24.0 4.2 34 55-91 107-140 (179)
378 PF14597 Lactamase_B_5: Metall 35.2 31 0.00068 26.5 2.1 59 27-90 21-81 (199)
379 cd06538 CIDE_N_FSP27 CIDE_N do 35.0 51 0.0011 21.6 2.8 32 3-36 22-53 (79)
380 TIGR00715 precor6x_red precorr 34.7 1.7E+02 0.0036 23.2 6.3 28 116-143 199-232 (256)
381 PRK10886 DnaA initiator-associ 34.6 58 0.0013 24.8 3.6 28 50-77 122-149 (196)
382 cd03796 GT1_PIG-A_like This fa 34.5 1.2E+02 0.0025 24.9 5.6 85 53-141 211-300 (398)
383 PRK02947 hypothetical protein; 34.4 49 0.0011 25.9 3.2 26 50-75 119-144 (246)
384 cd06523 GH25_PlyB-like PlyB is 34.4 1.2E+02 0.0026 22.3 5.2 56 7-74 69-125 (177)
385 cd03017 PRX_BCP Peroxiredoxin 34.4 1.1E+02 0.0023 20.8 4.7 39 50-89 43-81 (140)
386 PF10740 DUF2529: Protein of u 34.3 39 0.00084 25.5 2.5 21 51-71 95-115 (172)
387 PRK13936 phosphoheptose isomer 34.2 55 0.0012 24.6 3.4 28 50-77 124-151 (197)
388 PF02606 LpxK: Tetraacyldisacc 34.2 57 0.0012 26.8 3.7 81 50-140 51-134 (326)
389 PRK08444 hypothetical protein; 34.0 52 0.0011 27.4 3.5 41 27-68 301-341 (353)
390 PRK14557 pyrH uridylate kinase 33.9 1.1E+02 0.0023 24.1 5.1 30 55-85 200-229 (247)
391 TIGR00433 bioB biotin syntheta 33.9 1E+02 0.0023 24.2 5.1 19 119-137 156-174 (296)
392 PF02017 CIDE-N: CIDE-N domain 33.8 79 0.0017 20.6 3.6 33 3-36 22-54 (78)
393 PRK06256 biotin synthase; Vali 33.7 2.5E+02 0.0055 22.6 9.0 78 51-138 126-204 (336)
394 cd06593 GH31_xylosidase_YicI Y 33.7 1.9E+02 0.0042 23.1 6.7 48 22-72 40-87 (308)
395 KOG1050 Trehalose-6-phosphate 33.4 86 0.0019 28.9 5.0 49 21-82 502-551 (732)
396 PRK11778 putative inner membra 33.3 1.8E+02 0.0038 24.2 6.4 16 21-36 89-104 (330)
397 PRK10307 putative glycosyl tra 33.2 1.2E+02 0.0027 24.8 5.6 81 55-141 249-338 (412)
398 KOG3111 D-ribulose-5-phosphate 33.1 1.4E+02 0.0029 23.3 5.3 88 49-140 97-196 (224)
399 PRK11557 putative DNA-binding 33.1 61 0.0013 25.4 3.6 28 50-77 188-215 (278)
400 cd06604 GH31_glucosidase_II_Ma 33.0 1.6E+02 0.0034 24.1 6.1 45 22-71 40-84 (339)
401 PF03020 LEM: LEM domain; Int 33.0 5 0.00011 23.3 -1.9 30 55-85 10-39 (43)
402 PF15649 Tox-REase-7: Restrict 32.9 76 0.0016 21.1 3.5 42 28-74 39-80 (87)
403 COG0602 NrdG Organic radical a 32.8 64 0.0014 24.8 3.6 29 49-77 84-112 (212)
404 TIGR00355 purH phosphoribosyla 32.7 1.1E+02 0.0024 27.0 5.3 34 50-89 10-43 (511)
405 cd04906 ACT_ThrD-I_1 First of 32.6 43 0.00094 21.5 2.3 25 51-75 53-77 (85)
406 PRK10671 copA copper exporting 32.5 27 0.00059 32.3 1.7 20 19-38 514-533 (834)
407 KOG2383 Predicted ATPase [Gene 32.4 78 0.0017 27.4 4.2 66 55-138 215-282 (467)
408 PF05378 Hydant_A_N: Hydantoin 32.4 78 0.0017 23.5 3.9 23 51-73 134-156 (176)
409 cd05007 SIS_Etherase N-acetylm 32.4 78 0.0017 25.0 4.1 28 50-77 131-158 (257)
410 PRK11543 gutQ D-arabinose 5-ph 32.3 72 0.0016 25.5 4.0 28 50-77 102-129 (321)
411 cd02967 mauD Methylamine utili 32.1 1E+02 0.0022 20.1 4.1 26 63-89 52-77 (114)
412 PRK15482 transcriptional regul 32.0 73 0.0016 25.2 3.9 29 49-77 194-222 (285)
413 PF02635 DrsE: DsrE/DsrF-like 31.7 1.1E+02 0.0023 20.1 4.3 46 24-73 38-84 (122)
414 TIGR02494 PFLE_PFLC glycyl-rad 31.7 80 0.0017 25.0 4.1 28 48-75 137-165 (295)
415 COG0548 ArgB Acetylglutamate k 31.5 2.4E+02 0.0052 22.7 6.7 68 23-102 3-70 (265)
416 PRK11382 frlB fructoselysine-6 31.4 75 0.0016 26.0 4.0 28 50-77 105-132 (340)
417 TIGR00216 ispH_lytB (E)-4-hydr 31.2 81 0.0017 25.6 4.0 66 55-123 79-144 (280)
418 COG1519 KdtA 3-deoxy-D-manno-o 31.1 3.5E+02 0.0075 23.4 8.2 83 52-140 64-152 (419)
419 PRK11337 DNA-binding transcrip 31.1 85 0.0018 24.8 4.2 28 50-77 200-227 (292)
420 COG1927 Mtd Coenzyme F420-depe 31.1 86 0.0019 24.8 3.9 41 48-89 71-111 (277)
421 PTZ00056 glutathione peroxidas 30.9 67 0.0014 24.2 3.4 67 21-90 19-105 (199)
422 PF03033 Glyco_transf_28: Glyc 30.9 81 0.0018 21.4 3.6 32 54-89 16-47 (139)
423 PF01113 DapB_N: Dihydrodipico 30.7 80 0.0017 21.8 3.5 35 51-86 78-112 (124)
424 KOG4003 Pyrazinamidase/nicotin 30.5 93 0.002 24.0 4.0 93 23-118 3-97 (223)
425 PF00875 DNA_photolyase: DNA p 30.5 42 0.00092 24.1 2.2 44 48-92 50-93 (165)
426 PF06434 Aconitase_2_N: Aconit 30.4 82 0.0018 24.3 3.7 41 49-89 38-83 (204)
427 TIGR02666 moaA molybdenum cofa 30.3 1.4E+02 0.003 24.1 5.4 82 48-136 71-154 (334)
428 PRK10892 D-arabinose 5-phospha 30.0 63 0.0014 26.0 3.3 29 49-77 106-134 (326)
429 PF02350 Epimerase_2: UDP-N-ac 30.0 1.8E+02 0.0038 23.9 6.0 83 50-140 199-283 (346)
430 PF05198 IF3_N: Translation in 29.8 1.5E+02 0.0032 19.1 4.4 39 22-74 13-51 (76)
431 PRK13717 conjugal transfer pro 29.8 24 0.00052 25.3 0.7 54 19-72 42-103 (128)
432 PRK10537 voltage-gated potassi 29.6 3.5E+02 0.0075 22.9 8.8 87 54-141 253-356 (393)
433 PRK00652 lpxK tetraacyldisacch 29.5 1.4E+02 0.003 24.6 5.2 82 51-141 66-149 (325)
434 PF03709 OKR_DC_1_N: Orn/Lys/A 29.4 56 0.0012 22.4 2.5 40 19-74 36-77 (115)
435 PF05872 DUF853: Bacterial pro 29.3 69 0.0015 28.1 3.5 61 19-88 252-313 (502)
436 TIGR00393 kpsF KpsF/GutQ famil 29.3 68 0.0015 24.8 3.3 29 49-77 59-87 (268)
437 cd03802 GT1_AviGT4_like This f 29.2 2.2E+02 0.0047 22.0 6.2 90 49-141 182-275 (335)
438 PRK13402 gamma-glutamyl kinase 29.2 1.8E+02 0.004 24.3 6.0 95 24-122 166-283 (368)
439 PF10566 Glyco_hydro_97: Glyco 29.2 1.1E+02 0.0024 24.6 4.5 41 49-90 71-122 (273)
440 PF01055 Glyco_hydro_31: Glyco 29.1 2E+02 0.0042 24.2 6.2 45 22-71 59-103 (441)
441 TIGR02918 accessory Sec system 29.0 1.8E+02 0.0039 25.3 6.1 85 50-141 331-423 (500)
442 cd04254 AAK_UMPK-PyrH-Ec UMP k 28.5 1.5E+02 0.0032 22.8 5.0 27 57-84 196-222 (231)
443 PRK00028 infC translation init 28.4 1.6E+02 0.0035 22.1 5.0 40 21-74 19-58 (177)
444 COG2099 CobK Precorrin-6x redu 28.4 3.1E+02 0.0068 22.0 6.9 92 45-143 109-231 (257)
445 cd02955 SSP411 TRX domain, SSP 28.4 99 0.0021 21.6 3.7 43 19-63 79-121 (124)
446 TIGR01027 proB glutamate 5-kin 28.2 2.8E+02 0.006 23.1 6.9 36 56-92 216-251 (363)
447 PF00696 AA_kinase: Amino acid 28.2 85 0.0018 23.8 3.6 59 24-93 2-60 (242)
448 PRK01018 50S ribosomal protein 28.1 1.5E+02 0.0032 19.8 4.4 35 48-83 16-50 (99)
449 cd03821 GT1_Bme6_like This fam 28.1 2E+02 0.0043 22.0 5.8 86 52-141 220-312 (375)
450 PRK14556 pyrH uridylate kinase 28.0 1.4E+02 0.0031 23.7 4.9 29 55-84 210-238 (249)
451 cd03819 GT1_WavL_like This fam 27.9 1.6E+02 0.0034 23.0 5.2 87 51-141 201-295 (355)
452 PRK00164 moaA molybdenum cofac 27.9 1.4E+02 0.0029 24.1 4.9 41 49-89 78-120 (331)
453 TIGR03586 PseI pseudaminic aci 27.9 1.1E+02 0.0024 25.3 4.3 79 54-136 124-217 (327)
454 PF07611 DUF1574: Protein of u 27.8 1.2E+02 0.0025 25.4 4.5 41 49-90 250-290 (345)
455 cd08185 Fe-ADH1 Iron-containin 27.7 1.6E+02 0.0035 24.3 5.4 37 52-89 12-56 (380)
456 PLN02891 IMP cyclohydrolase 27.6 1.6E+02 0.0036 26.2 5.5 34 50-89 32-65 (547)
457 KOG2599 Pyridoxal/pyridoxine/p 27.4 52 0.0011 26.8 2.3 31 47-77 163-193 (308)
458 cd03809 GT1_mtfB_like This fam 27.2 2E+02 0.0043 22.2 5.6 87 51-141 211-303 (365)
459 TIGR00274 N-acetylmuramic acid 27.2 1E+02 0.0022 24.9 4.0 28 50-77 139-166 (291)
460 PF02571 CbiJ: Precorrin-6x re 27.0 25 0.00055 27.8 0.5 28 47-74 112-140 (249)
461 COG1366 SpoIIAA Anti-anti-sigm 26.9 1.3E+02 0.0028 20.3 4.0 58 22-92 44-101 (117)
462 TIGR02765 crypto_DASH cryptoch 26.7 73 0.0016 26.8 3.2 44 48-92 58-101 (429)
463 PRK13602 putative ribosomal pr 26.5 1.6E+02 0.0036 18.9 4.2 30 48-77 11-40 (82)
464 PF04015 DUF362: Domain of unk 26.4 1.4E+02 0.0029 22.3 4.4 44 48-92 19-66 (206)
465 PRK00648 Maf-like protein; Rev 26.3 53 0.0012 24.9 2.1 23 64-89 2-24 (191)
466 cd02971 PRX_family Peroxiredox 26.3 1.6E+02 0.0034 19.9 4.4 36 50-86 42-77 (140)
467 cd04239 AAK_UMPK-like AAK_UMPK 26.3 1.9E+02 0.004 22.1 5.2 28 56-84 193-220 (229)
468 TIGR03527 selenium_YedF seleni 26.2 2.9E+02 0.0064 20.9 6.6 43 17-71 116-158 (194)
469 PF13588 HSDR_N_2: Type I rest 26.1 70 0.0015 21.4 2.5 26 51-76 68-93 (112)
470 PRK09461 ansA cytoplasmic aspa 26.0 1.1E+02 0.0025 25.1 4.2 27 51-77 251-277 (335)
471 PRK00881 purH bifunctional pho 26.0 1.8E+02 0.0038 25.8 5.4 33 50-88 14-46 (513)
472 PTZ00106 60S ribosomal protein 25.9 2.2E+02 0.0048 19.5 6.7 72 48-123 25-98 (108)
473 COG1126 GlnQ ABC-type polar am 25.9 1.2E+02 0.0026 24.0 4.0 52 21-85 154-205 (240)
474 PLN02920 pantothenate kinase 1 25.8 3.3E+02 0.0072 23.3 6.9 68 20-88 16-120 (398)
475 PF02579 Nitro_FeMo-Co: Dinitr 25.7 1.1E+02 0.0023 19.4 3.3 66 18-90 9-77 (94)
476 PF12017 Tnp_P_element: Transp 25.5 2.6E+02 0.0056 22.0 5.9 36 53-89 198-233 (236)
477 PLN02825 amino-acid N-acetyltr 25.4 1.8E+02 0.004 25.6 5.5 59 23-94 18-76 (515)
478 PF08534 Redoxin: Redoxin; In 25.4 56 0.0012 22.6 2.0 37 52-89 50-86 (146)
479 KOG0023 Alcohol dehydrogenase, 25.3 1.2E+02 0.0026 25.5 4.0 38 55-94 196-233 (360)
480 cd00532 MGS-like MGS-like doma 25.2 1.3E+02 0.0029 20.2 3.8 34 50-89 11-44 (112)
481 PF12965 DUF3854: Domain of un 25.2 88 0.0019 22.2 3.0 53 24-87 72-126 (130)
482 PRK05749 3-deoxy-D-manno-octul 25.2 3.9E+02 0.0085 22.0 8.2 83 52-140 65-153 (425)
483 cd02970 PRX_like2 Peroxiredoxi 25.1 1.9E+02 0.0041 19.7 4.7 39 50-89 43-81 (149)
484 cd08573 GDPD_GDE1 Glycerophosp 24.9 1.6E+02 0.0035 23.0 4.7 35 54-89 218-252 (258)
485 PRK10606 btuE putative glutath 24.8 2.4E+02 0.0051 21.1 5.4 61 49-111 42-114 (183)
486 PRK10976 putative hydrolase; P 24.8 75 0.0016 24.5 2.8 36 104-139 194-231 (266)
487 COG2089 SpsE Sialic acid synth 24.7 2.6E+02 0.0057 23.4 5.9 85 54-138 137-232 (347)
488 PRK05441 murQ N-acetylmuramic 24.6 1.2E+02 0.0026 24.6 4.0 28 50-77 144-171 (299)
489 PRK09860 putative alcohol dehy 24.5 1.7E+02 0.0037 24.4 5.0 37 52-89 17-61 (383)
490 cd04962 GT1_like_5 This family 24.3 3.2E+02 0.007 21.4 6.5 83 53-141 215-301 (371)
491 TIGR03088 stp2 sugar transfera 24.3 3.4E+02 0.0073 21.6 6.6 72 64-141 229-303 (374)
492 COG1911 RPL30 Ribosomal protei 24.2 1.9E+02 0.0041 19.8 4.2 37 49-86 20-56 (100)
493 TIGR01890 N-Ac-Glu-synth amino 24.0 3E+02 0.0065 23.2 6.5 59 23-94 18-76 (429)
494 PRK08057 cobalt-precorrin-6x r 24.0 31 0.00068 27.3 0.5 28 47-75 111-138 (248)
495 COG1526 FdhD Uncharacterized p 24.0 3.9E+02 0.0084 21.5 8.6 102 4-138 142-247 (266)
496 cd05013 SIS_RpiR RpiR-like pro 23.9 2.3E+02 0.0049 18.8 7.6 84 53-140 3-93 (139)
497 COG1501 Alpha-glucosidases, fa 23.9 2.5E+02 0.0055 26.1 6.3 46 22-74 296-344 (772)
498 KOG0541 Alkyl hydroperoxide re 23.8 3.2E+02 0.0069 20.5 6.4 63 21-91 43-105 (171)
499 COG0535 Predicted Fe-S oxidore 23.8 2.2E+02 0.0047 22.5 5.4 42 48-90 77-121 (347)
500 PRK10513 sugar phosphate phosp 23.7 80 0.0017 24.3 2.8 36 104-139 200-237 (270)
No 1
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.94 E-value=2.6e-27 Score=183.62 Aligned_cols=97 Identities=25% Similarity=0.181 Sum_probs=84.6
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHHh--hCCCcc
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFLF--FFSISA 116 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~~--~~~~~~ 116 (149)
+..++.||+.++|+.|+++|++++++||+++.. ++..++.+|+.+||+.+ ...||+|+++++.+. +++|++
T Consensus 83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred cCCCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 446899999999999999999999999999988 79999999999999875 244888855555554 488999
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
|+|||||++||+||++|||.+|.+..
T Consensus 162 CvviEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 162 CVVVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred eEEEecchhHHHHHHHCCCEEEEecC
Confidence 99999999999999999999998753
No 2
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.87 E-value=4.5e-22 Score=149.54 Aligned_cols=119 Identities=24% Similarity=0.269 Sum_probs=98.8
Q ss_pred CccEEEEecCCccccccccc-----------------cccCCCCccCccHHHHHHHHHHCCceEEEEeCC-CchHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYCEC-----------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTF 82 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~-----------------~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~-~~~~i~~~~ 82 (149)
.|++++||+|+|||+++++. +.....+.++||+.++|+.|+++|++++|+||+ +... ++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~ 79 (174)
T TIGR01685 1 LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEI 79 (174)
T ss_pred CCcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHH
Confidence 38999999999999987662 123445789999999999999999999999998 7777 7899
Q ss_pred HHHcCCC---------CCccccc----ccCCChhHHHHHHh------hCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 83 LHKLGIH---------SMFVPMV----RLSCCIMCIIFFLF------FFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 83 l~~~gl~---------~~f~~~~----~~~p~p~~~i~~~~------~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++.+++. .+|+.+. ..++.|.+.++.+. +++|++|++++||+.+++||++||++++-.
T Consensus 80 L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v 156 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYC 156 (174)
T ss_pred HHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEc
Confidence 9999998 8888753 23455555666653 488999999999999999999999998765
No 3
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.87 E-value=5.8e-22 Score=157.22 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=80.7
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|++|+++|++++|+||++... +...++++|+..||+.+. ..||+|.++..+. .+++|++|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 35689999999999999999999999999988 799999999999998763 3477774444443 56778999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++||..|++||++|||+++.+
T Consensus 186 l~IgDs~~Di~aA~~aG~~~i~v 208 (260)
T PLN03243 186 IVFGNSNSSVEAAHDGCMKCVAV 208 (260)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEE
Confidence 99999999999999999998765
No 4
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.87 E-value=5.7e-22 Score=153.77 Aligned_cols=92 Identities=15% Similarity=0.050 Sum_probs=77.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|++|+++|++++|+||+++.. +...++.+|+..+|+.+. ..||+|.++.++. .+++|++|+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 5689999999999999999999999999888 688899999999998652 3467774444433 567789999
Q ss_pred EEeehHhHHHHHHHhCCchhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~ 139 (149)
++|||+.|++||++|||++++
T Consensus 171 ~igDs~~di~aA~~aG~~~~~ 191 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIRYCL 191 (224)
T ss_pred EEcCCHHHHHHHHHcCCeEEE
Confidence 999999999999999999643
No 5
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=5.6e-22 Score=155.75 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|++|+++|++++|+||+++.. ++..++++|+..||+.+. ..||+|.++..+. .+++|++|
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 184 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT 184 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence 46789999999999999999999999999998 799999999999998762 3477775544444 45778999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++|++.||+||++||++++.+
T Consensus 185 l~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 185 FVFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEEcCCHHHHHHHHHCCCEEEEE
Confidence 99999999999999999998865
No 6
>PRK11587 putative phosphatase; Provisional
Probab=99.86 E-value=1.3e-21 Score=150.54 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=76.8
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|+.|+++|++++|+||++... +...++..++. +|+.+ ...||+|.++..+. .+++|++|
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l~-~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGLP-APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC 158 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCCC-CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence 45789999999999999999999999999887 68888888884 34433 23477774444443 56788999
Q ss_pred EEEeehHhHHHHHHHhCCchhhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
++++||+.|++||++|||+++.+.
T Consensus 159 l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EEEecchhhhHHHHHCCCEEEEEC
Confidence 999999999999999999988764
No 7
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.85 E-value=2e-21 Score=150.73 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=79.7
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
.+++||+.++|++|+++|++++|+||++... +...++.+++..+|+.+. ..||+|.+...+. .+++|++|+
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l 172 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 5789999999999999999999999999887 688999999998887642 3477775555554 567789999
Q ss_pred EEeehHhHHHHHHHhCCchhhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
+++|++++|.+|++||++++.+
T Consensus 173 ~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 173 YVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred EeCCCHHHHHHHHHCCCcEEEE
Confidence 9999999999999999998754
No 8
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.85 E-value=2.6e-21 Score=148.02 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=80.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|++|+++|++++|+||++... +...++.+|+..+|+.+. ..||+|.++..+. .++++++|+
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 171 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV 171 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence 4689999999999999999999999999888 689999999999998752 3477775544444 557779999
Q ss_pred EEeehH-hHHHHHHHhCCchhhhhh
Q 032013 119 LFVDLF-CFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 119 ~~eDs~-~gi~aa~~ag~~~~~~~~ 142 (149)
+++||+ ++|++|++||++++.+.+
T Consensus 172 ~igDs~~~di~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 172 MVGDRLDKDIKGAKNLGMKTVWINQ 196 (221)
T ss_pred EECCChHHHHHHHHHCCCEEEEECC
Confidence 999998 899999999999987654
No 9
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.85 E-value=2.8e-21 Score=147.84 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=80.6
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|++|+++|++++|+||++... +...++.+|+..||+.+. ..||+|.....+. .++++++|
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 35789999999999999999999999999888 799999999999998763 2477775555444 45777999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++||+++++||++||++++.+
T Consensus 159 ~~iGDs~~Di~aa~~aG~~~i~v 181 (214)
T PRK13288 159 LMVGDNHHDILAGKNAGTKTAGV 181 (214)
T ss_pred EEECCCHHHHHHHHHCCCeEEEE
Confidence 99999999999999999998754
No 10
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.85 E-value=3.4e-21 Score=159.82 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=81.9
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|+.|+++|++++|+||+++.. ++..++.+|+..||+.+. ..||+|.++.++. .++.|++|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 35789999999999999999999999999998 799999999999998873 3477775555444 55678999
Q ss_pred EEEeehHhHHHHHHHhCCchhhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
++|+||+.||+||++|||+++.+.
T Consensus 293 l~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEEC
Confidence 999999999999999999988753
No 11
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.85 E-value=4.4e-21 Score=147.62 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=81.6
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|+.|+++|++++|+||+.... ++..++.+++..+|+.+. ..||+|.....+. .+++|++|
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 35789999999999999999999999999988 799999999999998763 3477774433333 56777999
Q ss_pred EEEeehHhHHHHHHHhCCchhhhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
++++||++++.||++||++++.+.+
T Consensus 169 ~~igDs~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred EEEcCChhhHHHHHHcCCEEEEecC
Confidence 9999999999999999999988753
No 12
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.84 E-value=5.8e-21 Score=149.69 Aligned_cols=93 Identities=8% Similarity=-0.069 Sum_probs=78.3
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------cccCCChhHHHHHH--hhCC-Ccc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRLSCCIMCIIFFL--FFFS-ISA 116 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~~p~p~~~i~~~--~~~~-~~~ 116 (149)
..++||+.++|++|+++|++++|+||++... ++..++.+|+..+| +.+ ...||+|.++..+. .++. |++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 4689999999999999999999999999988 79999999999886 543 24477875555544 4453 789
Q ss_pred eEEEeehHhHHHHHHHhCCchhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
|++++||++||+||++|||++|.+
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeEEEE
Confidence 999999999999999999999865
No 13
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.84 E-value=4.4e-21 Score=145.01 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=81.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA 116 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~ 116 (149)
.+++||+.++|++|+++|++++|+||++... +...++.+|+..+|+.+. ..||+| .+|.. .+++|++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~--~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPFDAVLSADAVRAYKPAP--QVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhhheeEehhhcCCCCCCH--HHHHHHHHHhCCChhh
Confidence 5688999999999999999999999999888 799999999988888652 346776 55554 6678899
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~~ 143 (149)
|++++|++.++.+|++|||+++.+.|-
T Consensus 168 ~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 168 VLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred EEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 999999999999999999999987763
No 14
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.84 E-value=3.5e-21 Score=149.46 Aligned_cols=96 Identities=21% Similarity=0.144 Sum_probs=76.5
Q ss_pred CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC-CCCCcccc--------cccCCChhHHHHHH----h
Q 032013 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMFVPM--------VRLSCCIMCIIFFL----F 110 (149)
Q Consensus 44 ~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g-l~~~f~~~--------~~~~p~p~~~i~~~----~ 110 (149)
.....+.||+.+++++|+.+|++++++|++++.. .+..++.++ +...|... ...||+| ++|++ +
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~P--di~l~A~~~l 164 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVKNGKPDP--DIYLKAAKRL 164 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhcCCCeecCCccccCCCCCc--hHHHHHHHhc
Confidence 3456899999999999999999999999998887 677777665 44434332 2346777 77776 4
Q ss_pred hCCC-cceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 111 FFSI-SAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 111 ~~~~-~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
+.++ ++|+|||||++|++||++|||++|....
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 5666 8999999999999999999999997653
No 15
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.84 E-value=1.5e-20 Score=136.97 Aligned_cols=119 Identities=17% Similarity=0.046 Sum_probs=90.3
Q ss_pred cEEEEecCCccccccc-cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHc
Q 032013 23 RLVVFDLDYTLWPFYC-ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL 86 (149)
Q Consensus 23 k~vifDlDGTLld~~~-~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~ 86 (149)
++++||+||||++... .+...+....++||+.++|++|+++|++++|+||+++ .. +...++++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 79 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL 79 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence 4689999999999632 1222333457899999999999999999999999874 34 56778889
Q ss_pred CCCC--Cccc-------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 87 GIHS--MFVP-------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 87 gl~~--~f~~-------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
++.. +|.. ....||+|.....+. .++++++|+.++|++.+|++|+++|++++.+.|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 80 GVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD 146 (147)
T ss_pred CCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence 9862 2221 123477774443333 457779999999999999999999999998875
No 16
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.84 E-value=1.9e-20 Score=143.50 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=77.8
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC--CCccccc------ccCCChhHHHHHH--hhCC-Cc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMV------RLSCCIMCIIFFL--FFFS-IS 115 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~--~~f~~~~------~~~p~p~~~i~~~--~~~~-~~ 115 (149)
.+++||+.++|++|+++|++++|+||++... +...++.+|+. .+|+.+. ..||+|.....+. .+++ |+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 5799999999999999999999999999998 79999999998 8888762 3467774444443 3454 58
Q ss_pred ceEEEeehHhHHHHHHHhCCch-hhh
Q 032013 116 AFILFVDLFCFMYAAAYVGCDL-YVY 140 (149)
Q Consensus 116 ~~l~~eDs~~gi~aa~~ag~~~-~~~ 140 (149)
+|++++|++.||+||++|||++ +.+
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~~~i~~ 190 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAGAVVGV 190 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCCeEEEE
Confidence 9999999999999999999999 443
No 17
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.83 E-value=1.1e-20 Score=143.69 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=79.9
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|++|+++|++++|+||++... ++..++++|+..+|+.+. ..||+|.++..+. .+++|++|+
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 5789999999999999999999999999888 799999999999987653 2477775544444 456779999
Q ss_pred EEeehHhHHHHHHHhCCchhhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
+++||++|+++|++||++++.+
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999866
No 18
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.82 E-value=1.8e-20 Score=140.09 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=74.7
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++|+ .+.|++|+++ ++++|+||++... ++..++++|+..||+.+. ..||+|.+...+. .+++|++|+
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 456775 5899999876 8999999999998 799999999999998762 3467774444333 556679999
Q ss_pred EEeehHhHHHHHHHhCCchhhhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
+++|++.|++||++||+++|-+.
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 164 VFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999988654
No 19
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.82 E-value=3.7e-20 Score=131.89 Aligned_cols=118 Identities=21% Similarity=0.151 Sum_probs=91.3
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC--------chHHHHHHHHHcCCCCCccc
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~--------~~~i~~~~l~~~gl~~~f~~ 94 (149)
|+++||+||||+++-.+ ........++|++.++|++|+++|++++++||++ ... +...++.+++...+..
T Consensus 1 k~~~~D~dgtL~~~~~~-~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~ 78 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY-VDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVPIDVLY 78 (132)
T ss_pred CEEEEeCCCceecCCCC-CCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCCEEEEE
Confidence 57999999999974111 1122335789999999999999999999999998 677 6889999998643322
Q ss_pred c--cccCCChhHHHHHH--h-hCCCcceEEEee-hHhHHHHHHHhCCchhhhhh
Q 032013 95 M--VRLSCCIMCIIFFL--F-FFSISAFILFVD-LFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 95 ~--~~~~p~p~~~i~~~--~-~~~~~~~l~~eD-s~~gi~aa~~ag~~~~~~~~ 142 (149)
. ...||+|..+.++. . ++++++|+.+.| +..+|.+|+++|++++.+.+
T Consensus 79 ~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 79 ACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred ECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 1 23477775554444 4 367799999999 89999999999999998754
No 20
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.82 E-value=7e-20 Score=144.96 Aligned_cols=94 Identities=9% Similarity=-0.064 Sum_probs=76.3
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------cccCCChhHHHHHH--hhCC-Ccc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRLSCCIMCIIFFL--FFFS-ISA 116 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~~p~p~~~i~~~--~~~~-~~~ 116 (149)
..++||+.++|++|+++|++++|+||++... +...++.+++..+| +.+ ...||+|.++..+. .++. +++
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 4679999999999999999999999999988 68899988887764 443 13477775444443 4454 488
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
|++++||++||+||++|||++|.+.
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 9999999999999999999988653
No 21
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.82 E-value=3.5e-20 Score=157.09 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=81.6
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc-----cCCChhHHHHHHhhCCCcceEEE
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR-----LSCCIMCIIFFLFFFSISAFILF 120 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~-----~~p~p~~~i~~~~~~~~~~~l~~ 120 (149)
..+++||+.++|++|+++|++++|+||++... +...++.+++..||+.+.. .+|+|.+...+...++|++|+++
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~V 406 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVV 406 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEE
Confidence 35789999999999999999999999999999 7999999999999887621 25777544444466889999999
Q ss_pred eehHhHHHHHHHhCCchhhhh
Q 032013 121 VDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 121 eDs~~gi~aa~~ag~~~~~~~ 141 (149)
|||++|++||++|||.++.+.
T Consensus 407 GDs~~Di~aAk~AG~~~I~v~ 427 (459)
T PRK06698 407 GDRLSDINAAKDNGLIAIGCN 427 (459)
T ss_pred eCCHHHHHHHHHCCCeEEEEe
Confidence 999999999999999987653
No 22
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.81 E-value=6.7e-20 Score=146.40 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc---CCChhHHHHHH--hhCCCcceEEE
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL---SCCIMCIIFFL--FFFSISAFILF 120 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~---~p~p~~~i~~~--~~~~~~~~l~~ 120 (149)
..+++||+.++|++|+++|++++|+||+.... +...++.+|+.++|+.+... .++|.+...+. .++.|++|++|
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYV 218 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence 35789999999999999999999999999998 79999999999999876322 34554433333 46788999999
Q ss_pred eehHhHHHHHHHhCCchhhh
Q 032013 121 VDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 121 eDs~~gi~aa~~ag~~~~~~ 140 (149)
+||++||+||++|||+++.+
T Consensus 219 GDs~~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 219 GDETRDVEAARQVGLIAVAV 238 (273)
T ss_pred CCCHHHHHHHHHCCCeEEEE
Confidence 99999999999999998754
No 23
>PLN02940 riboflavin kinase
Probab=99.81 E-value=4.9e-20 Score=153.27 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=79.5
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH-HcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA 116 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~-~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~ 116 (149)
...++||+.++|++|+++|++++|+||+++.. +...++ ..++.++|+.+. ..||+|.....+. .+++|++
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 35689999999999999999999999999888 688887 789999998772 3477774433333 5677899
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
|++++||+.||+||++|||+++.+.
T Consensus 170 ~l~VGDs~~Di~aA~~aGi~~I~v~ 194 (382)
T PLN02940 170 CLVIEDSLPGVMAGKAAGMEVIAVP 194 (382)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEEC
Confidence 9999999999999999999988765
No 24
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.81 E-value=2.1e-19 Score=134.42 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=83.9
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHcC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKLG 87 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~g 87 (149)
+++++|.||||+....+ ....+...++||+.++|++|+++|++++|+||++. .. ....++..+
T Consensus 2 ~~~~~D~Dgtl~~~~~~-~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 79 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGY-VHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEW-MDWSLAERD 79 (176)
T ss_pred CEEEEeCCCCEeCCCCC-CCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHHcC
Confidence 67999999999953222 22334577899999999999999999999999984 22 234556655
Q ss_pred CC--CCccc-------------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 88 IH--SMFVP-------------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 88 l~--~~f~~-------------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
+. ..+.+ ....||+|..+..+. .++++++|++++|++.+|+||++||++++
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~ 147 (176)
T TIGR00213 80 VDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTN 147 (176)
T ss_pred CCccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEE
Confidence 44 21211 123588885544444 56778999999999999999999999983
No 25
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.81 E-value=1.2e-19 Score=135.08 Aligned_cols=90 Identities=26% Similarity=0.285 Sum_probs=75.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|+.|+++|++++++||+ .. ++..++.+|+..+|+.+. ..||+|..+..+. .++++++|+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 679999999999999999999999998 55 688999999999888762 3467774433333 457779999
Q ss_pred EEeehHhHHHHHHHhCCchhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+++|++.+++||++|||+++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred EEeCcHhhHHHHHHCCCeEee
Confidence 999999999999999999874
No 26
>PRK06769 hypothetical protein; Validated
Probab=99.80 E-value=2.1e-19 Score=134.50 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=90.4
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch--------HHHHHHHHHcCCCCCc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSMF 92 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~--------~i~~~~l~~~gl~~~f 92 (149)
.++++++|.||||-.+ ..+.. .....++||+.++|++|+++|++++|+||++.. . ....++.+|+..+|
T Consensus 3 ~~~~~~~d~d~~~~~~-~~~~~-~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~~ 79 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD-TTIHY-PGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDIY 79 (173)
T ss_pred CCcEEEEeCCCcccCC-CCCCC-HHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEEE
Confidence 4899999999999642 22221 123578999999999999999999999998741 2 24457788888877
Q ss_pred cccc-------ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 93 VPMV-------RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 93 ~~~~-------~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
.... ..||+|.....+. .+++|++|++++|++.+++||++|||+++.+.+
T Consensus 80 ~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 80 LCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRT 138 (173)
T ss_pred ECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEec
Confidence 5432 3578774444443 456679999999999999999999999997754
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.80 E-value=9.9e-20 Score=138.41 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=79.3
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSIS 115 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~ 115 (149)
...++||+.++|++|+++|++++|+||+.... +...++.+|+.++|+.+. ..||+| ++|.. .+++++
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~--~~~~~~~~~~~~~~~ 149 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLFDHVIGSDEVPRPKPAP--DIVREALRLLDVPPE 149 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhheeeEEecCcCCCCCCCh--HHHHHHHHHcCCChh
Confidence 46789999999999999999999999999888 799999999998888652 246666 66665 557789
Q ss_pred ceEEEeehHhHHHHHHHhCCchhhh
Q 032013 116 AFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 116 ~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
+|++++|+++++.+|+++||+++.+
T Consensus 150 ~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 150 DAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred heEEEcCCHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999998754
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.80 E-value=3.5e-19 Score=133.59 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=88.5
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHK 85 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~ 85 (149)
+.|+++||.||||.-....+........++||+.++|++|+++|++++|+||++. .. ....++.
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 80 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEK-MDWSLAD 80 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence 5789999999998764323333334467999999999999999999999999863 22 2445666
Q ss_pred cCCC--CCccc-------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013 86 LGIH--SMFVP-------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 86 ~gl~--~~f~~-------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
+|+. ..|.. ....||+|..+..+. .++++++|++++|+++++.+|++|||+++...
T Consensus 81 ~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~ 147 (181)
T PRK08942 81 RGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVR 147 (181)
T ss_pred cCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEc
Confidence 6752 22211 124588885555444 55778999999999999999999999887653
No 29
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.80 E-value=1.4e-19 Score=138.89 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=73.9
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc-c------cccCCChhHHHHHH--hhCCCcce
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-M------VRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~-~------~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
..++||+.++|+.| +++++|+||++... ++..++.+++..+|+. + ...||+|..+..+. .+++|++|
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 57889999999998 48999999999888 7999999999998853 2 23477774444444 55677999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++|+++||+||++|||+++.+
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEEEE
Confidence 99999999999999999999754
No 30
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.80 E-value=1.8e-19 Score=134.10 Aligned_cols=89 Identities=29% Similarity=0.237 Sum_probs=74.0
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA 116 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~ 116 (149)
..++||+.++|++|+++|++++|+||+.. ....++.+|+..+|+.+. ..||+| .+|.. .++++++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p--~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDP--EIFLAAAEGLGVSPSE 160 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCCh--HHHHHHHHHcCCCHHH
Confidence 36889999999999999999999999753 356899999999988752 346666 66554 4577799
Q ss_pred eEEEeehHhHHHHHHHhCCchhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
|++++|++++++||++|||+++.+
T Consensus 161 ~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 161 CIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred eEEEecCHHHHHHHHHcCCEEEec
Confidence 999999999999999999998753
No 31
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.79 E-value=7.3e-19 Score=135.84 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=81.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc------cCCChhHHHHHHhhCCC--cceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR------LSCCIMCIIFFLFFFSI--SAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~------~~p~p~~~i~~~~~~~~--~~~l 118 (149)
..++||+.++|++|+++|++++|+||++... ++..++++|+..||+.+.+ .||+|.+.+.+...++. ++++
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4689999999999999999999999999999 7999999999999987754 48899887777755444 4889
Q ss_pred EEeehHhHHHHHHHhCCchhhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.+=||.+.|+||++||++++..
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v 188 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGV 188 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999987643
No 32
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.78 E-value=7.8e-19 Score=139.89 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=78.0
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|+.|+++|++++|+||++... ++..++.+++..+|+.+. ..||+|.++..+. .++++++|+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 4579999999999999999999999999888 689999999998887652 3477775555544 557779999
Q ss_pred EEeehHhHHHHHHHhCCchhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+++|+.++|++|++|||+++.
T Consensus 179 ~IGD~~~Di~aA~~aGi~~i~ 199 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQCVA 199 (272)
T ss_pred EECCCHHHHHHHHHCCCeEEE
Confidence 999999999999999998765
No 33
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.78 E-value=1.4e-18 Score=133.05 Aligned_cols=94 Identities=24% Similarity=0.275 Sum_probs=79.3
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|++|+++|++++++||+.... +...++.+++..+|+.+. ..||+|.....+. .++++++|
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM 169 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence 36799999999999999999999999999888 689999999998888653 3467774433333 55777999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++|+++++.+|+++|++++.+
T Consensus 170 i~igD~~~Di~~a~~~g~~~i~v 192 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSVGV 192 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEEEE
Confidence 99999999999999999998764
No 34
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.78 E-value=1.6e-18 Score=131.37 Aligned_cols=89 Identities=21% Similarity=0.164 Sum_probs=73.8
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL 119 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~ 119 (149)
.++||+.++|++|+++|++++|+||++. . ....++.+|+..+|+.+. ..||+|..+.++. .+++|++|++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 4689999999999999999999999875 4 478899999998888662 3477774444333 5677899999
Q ss_pred EeehH-hHHHHHHHhCCchh
Q 032013 120 FVDLF-CFMYAAAYVGCDLY 138 (149)
Q Consensus 120 ~eDs~-~gi~aa~~ag~~~~ 138 (149)
++|++ ++|++|++|||++|
T Consensus 183 IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred ECCCchHHHHHHHHcCCeee
Confidence 99997 89999999999986
No 35
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.77 E-value=1.8e-18 Score=128.03 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=73.6
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
.+++||+.++|++|+++|++++++||++... .....++|+..+|+.+. ..||+|..+..+. .+++|++|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 5789999999999999999999999998764 44445589988888652 3466664444333 457889999
Q ss_pred EEeehHhHHHHHHHhCCchhh
Q 032013 119 LFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+++|++.+++||+++|+++|.
T Consensus 162 ~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred EEcCCHHHHHHHHHcCCEEEe
Confidence 999999999999999999875
No 36
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.76 E-value=2.1e-18 Score=129.08 Aligned_cols=89 Identities=18% Similarity=0.089 Sum_probs=73.8
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----c-----cCCChhHHHHHH--hhCCC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----R-----LSCCIMCIIFFL--FFFSI 114 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~-----~~p~p~~~i~~~--~~~~~ 114 (149)
.+++||+.++|++|+ ++++|+||++... +...++.+|+..+|+.+. . .||+|..+.++. .++.|
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 457899999999997 5799999999988 799999999999998652 1 277774443333 56788
Q ss_pred cceEEEeehHhHHHHHHHhCCchhh
Q 032013 115 SAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 115 ~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
++|++++|++.+|+||+++|++++.
T Consensus 159 ~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 159 ERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred cceEEEeCCHHHHHHHHHcCCEEee
Confidence 9999999999999999999999874
No 37
>PRK09449 dUMP phosphatase; Provisional
Probab=99.76 E-value=1.9e-18 Score=132.69 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=76.7
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHh--hCCC-cce
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLF--FFSI-SAF 117 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~--~~~~-~~~ 117 (149)
..++||+.++|++|+ +|++++|+||++... +...++.+|+..+|+.+. ..||+|.++..+.. ++.+ ++|
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 468899999999999 579999999999888 788999999999998762 34777744444444 3444 689
Q ss_pred EEEeehH-hHHHHHHHhCCchhhhhh
Q 032013 118 ILFVDLF-CFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 118 l~~eDs~-~gi~aa~~ag~~~~~~~~ 142 (149)
++++||+ ++|.+|++|||+++.+.+
T Consensus 172 ~~vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 172 LMVGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred EEEcCCcHHHHHHHHHCCCcEEEECC
Confidence 9999998 799999999999887653
No 38
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.75 E-value=2.6e-18 Score=131.18 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=79.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----h-hCCCc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----F-FFSIS 115 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~-~~~~~ 115 (149)
.+++||+.++|++|+++ ++++++||+.... +...++.+++..+|+.+. ..||+| .+|.. . +++|+
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~--~~~~~~~~~~~~~~~~ 171 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFFDDIFVSEDAGIQKPDK--EIFNYALERMPKFSKE 171 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhcCEEEEcCccCCCCCCH--HHHHHHHHHhcCCCch
Confidence 46899999999999999 9999999999888 699999999999998763 236666 55554 4 67889
Q ss_pred ceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013 116 AFILFVDLF-CFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~~ 142 (149)
+|++++||+ +++++|+++||+++.+.+
T Consensus 172 ~~v~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 172 EVLMIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred heEEECCCcHHHHHHHHHCCCcEEEECC
Confidence 999999998 899999999999998865
No 39
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=4.8e-18 Score=136.33 Aligned_cols=92 Identities=17% Similarity=0.039 Sum_probs=72.3
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC---cccc-----cccCCChhHHHHHH--hhCCCcce
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM---FVPM-----VRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~---f~~~-----~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
+++||+.++|++|+++|++++|+||++... +..+++..+...+ |+.+ ...||+|.++..+. .+++|++|
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 578999999999999999999999999888 6888877643223 2221 23477774444443 56778999
Q ss_pred EEEeehHhHHHHHHHhCCchhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++|+++||+||++|||++|.+
T Consensus 223 l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 223 VVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred EEEeCCHHhHHHHHHcCCEEEEE
Confidence 99999999999999999998875
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.75 E-value=1.8e-18 Score=131.34 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=73.9
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCCcccc------cccCCChhHHHHHH----hhCCCcc
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPM------VRLSCCIMCIIFFL----FFFSISA 116 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~f~~~------~~~~p~p~~~i~~~----~~~~~~~ 116 (149)
.++||+.++|++|+++|++++|+||++... ....+.. .++..+|+.+ ...||+| .+|.. .+++|++
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p--~~~~~~~~~~~~~p~~ 160 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAADHIYLSQDLGMRKPEA--RIYQHVLQAEGFSAAD 160 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhcCEEEEecccCCCCCCH--HHHHHHHHHcCCChhH
Confidence 578999999999999999999999998776 4555544 3666677654 2347777 55554 5678899
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
|++++|++.+|.+|+++|++++.+..
T Consensus 161 ~l~vgD~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 161 AVFFDDNADNIEAANALGITSILVTD 186 (199)
T ss_pred eEEeCCCHHHHHHHHHcCCEEEEecC
Confidence 99999999999999999999987653
No 41
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.75 E-value=1.9e-18 Score=125.63 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=79.2
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA 116 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~ 116 (149)
...++.||+.++|+.|+++|++++++||++... +...++.+|+..+|+.+. ..||+|..+..+. .+++|++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCccc-ccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 457899999999999999999999999999888 699999999998887652 2366664433333 5688899
Q ss_pred eEEEeehHhHHHHHHHhCCchhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
|++++|++.++++|++||++++.
T Consensus 153 ~~~vgD~~~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 153 ILFVGDSPSDVEAAKEAGIKTIW 175 (176)
T ss_dssp EEEEESSHHHHHHHHHTTSEEEE
T ss_pred EEEEeCCHHHHHHHHHcCCeEEe
Confidence 99999999999999999999874
No 42
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.75 E-value=3.3e-18 Score=130.41 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=74.2
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHH-HHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA 116 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i-~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~ 116 (149)
...++||+.++|++|+++|++++|+||++.... ....+...++.++|+.+. ..||+|..+..+. .+++|++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~ 171 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE 171 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence 356899999999999999999999999875430 123344467777777652 2477874444433 5677899
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
|++++|++.+|.+|++|||+++.+.+
T Consensus 172 ~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 172 CVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred eEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 99999999999999999999987654
No 43
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.75 E-value=5.4e-18 Score=128.13 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=72.1
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc----ccc---cccCCChhHHHHHHhhCCCcceE
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF----VPM---VRLSCCIMCIIFFLFFFSISAFI 118 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f----~~~---~~~~p~p~~~i~~~~~~~~~~~l 118 (149)
...++||+.++|++|+++ ++++++||++... ....++.+++..+| +.+ ...+|+|.+..++...+++++|+
T Consensus 72 ~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~~~~~v 149 (197)
T PHA02597 72 YLSAYDDALDVINKLKED-YDFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYGDRVVC 149 (197)
T ss_pred hccCCCCHHHHHHHHHhc-CCEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhCCCcEE
Confidence 356899999999999997 5678888877665 45566777776544 333 23477775555555666788899
Q ss_pred EEeehHhHHHHHHHh--CCchhhhh
Q 032013 119 LFVDLFCFMYAAAYV--GCDLYVYK 141 (149)
Q Consensus 119 ~~eDs~~gi~aa~~a--g~~~~~~~ 141 (149)
+++||.++++||++| ||+++.+.
T Consensus 150 ~vgDs~~di~aA~~a~~Gi~~i~~~ 174 (197)
T PHA02597 150 FVDDLAHNLDAAHEALSQLPVIHML 174 (197)
T ss_pred EeCCCHHHHHHHHHHHcCCcEEEec
Confidence 999999999999999 99998764
No 44
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.74 E-value=1.2e-17 Score=119.49 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=81.7
Q ss_pred cEEEEecCCccccccccccccCCCC-----ccCccHHHHHHHHHHCCceEEEEeCC-CchHHHHHHHHHcC-------CC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIP-----YLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IH 89 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~-----~~~pg~~e~L~~Lk~~Gi~i~IaT~~-~~~~i~~~~l~~~g-------l~ 89 (149)
|+++||+|||||+++.. ...+.. +++||+.++|++|+++|++++++||+ +... +...++..+ +.
T Consensus 1 kli~~DlD~Tl~~~~~~--~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~ 77 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENI--VVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLA 77 (128)
T ss_pred CEEEEeCCCCCCCCCcc--cccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhH
Confidence 57999999999985321 011101 37899999999999999999999999 6665 678888888 78
Q ss_pred CCccccccc--CCChhHHHHHH--hh--CCCcceEEEeehHhHHHHHHH
Q 032013 90 SMFVPMVRL--SCCIMCIIFFL--FF--FSISAFILFVDLFCFMYAAAY 132 (149)
Q Consensus 90 ~~f~~~~~~--~p~p~~~i~~~--~~--~~~~~~l~~eDs~~gi~aa~~ 132 (149)
++|+...+. +|+|.++..+. .+ +.|++|++|||++..+.+.++
T Consensus 78 ~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 78 EYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred hhhhhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHHh
Confidence 888876533 56665444444 66 788999999999999987654
No 45
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.74 E-value=2.2e-17 Score=123.09 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=84.4
Q ss_pred ccEEEEecCCcccccccc--ccccCCCC-ccCccHHHHHHHHHHCCceEEEEeCCCch------------HHHHHHHHHc
Q 032013 22 PRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL 86 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~--~~~~~~~~-~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~------------~i~~~~l~~~ 86 (149)
.+.++||+||||++.... +..+.+.. .++||+.++|++|+++|++++|+||++.. . +...++++
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~ 91 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL 91 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence 588999999999984110 10111112 26899999999999999999999998763 3 47788999
Q ss_pred CCCCCcccc----cccCCChhHHHHHH--hh--CCCcceEEEeehH--------hHHHHHHHhCCchh
Q 032013 87 GIHSMFVPM----VRLSCCIMCIIFFL--FF--FSISAFILFVDLF--------CFMYAAAYVGCDLY 138 (149)
Q Consensus 87 gl~~~f~~~----~~~~p~p~~~i~~~--~~--~~~~~~l~~eDs~--------~gi~aa~~ag~~~~ 138 (149)
|+...+... ...||+|....++. .+ +++++|+.+.|++ ++|+||++|||+.+
T Consensus 92 gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~ 159 (166)
T TIGR01664 92 KVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFK 159 (166)
T ss_pred CCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence 985411111 13478775555554 34 5679999999986 79999999999875
No 46
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.74 E-value=9.6e-18 Score=124.52 Aligned_cols=117 Identities=16% Similarity=0.007 Sum_probs=89.8
Q ss_pred cEEEEecCCccccccc--cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---------------chHHHHHHHHH
Q 032013 23 RLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK 85 (149)
Q Consensus 23 k~vifDlDGTLld~~~--~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---------------~~~i~~~~l~~ 85 (149)
++++||.||||++... ++....+..+++||+.++|++|+++|++++|+||++ ... +...++.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~ 80 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS 80 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence 5799999999998311 112222346799999999999999999999999973 334 5778899
Q ss_pred cCCCCCcccc-----------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 86 LGIHSMFVPM-----------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 86 ~gl~~~f~~~-----------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
+|+. |+.. ...||+|....++. .++++++|+.+.|+.+++.+|+++||+++.+.+
T Consensus 81 ~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 81 QGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 9986 3211 24578885555554 456779999999999999999999999998765
No 47
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.74 E-value=9.5e-18 Score=125.57 Aligned_cols=117 Identities=15% Similarity=0.004 Sum_probs=95.5
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccH-HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA-KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~-~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~ 98 (149)
+.+|+++||+||||+|+..+|+.+++..+-+... -..++.|+++|++++|+||++... ++..++.+|+..+|+..
T Consensus 5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f~~~--- 80 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFHEGI--- 80 (169)
T ss_pred ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEEecC---
Confidence 4489999999999999988887776644444222 256899999999999999999998 79999999999888753
Q ss_pred CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
+|+|.+...+. .++++++|+.|.|++|++.++++||+...+-
T Consensus 81 kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 81 KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 68885555554 4566789999999999999999999877653
No 48
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.73 E-value=9.5e-18 Score=154.17 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=77.9
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL 119 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~ 119 (149)
++||+.++|++|+++|++++|+||+.... ++..++++|+. .+|+.+. ..||+|..+..+. .++.|++|++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 68999999999999999999999999988 79999999996 6787662 3477774444444 5577899999
Q ss_pred EeehHhHHHHHHHhCCchhhhh
Q 032013 120 FVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 120 ~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
+||++.|++||++|||++|.+.
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEEC
Confidence 9999999999999999998764
No 49
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.71 E-value=6.2e-17 Score=122.53 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=67.5
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----ccCCChhHHHHHH--hhCCCcceEEEeehHh
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----RLSCCIMCIIFFL--FFFSISAFILFVDLFC 125 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~ 125 (149)
..++|+.|+++|++++|+||++... +...++.+|+..+|+.+. ..||+|.....+. .++++++|++++|+++
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~~~ 189 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDTVD 189 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCCHH
Confidence 4799999999999999999999998 799999999999997652 2277785544444 5677899999999999
Q ss_pred HHHHHHHh
Q 032013 126 FMYAAAYV 133 (149)
Q Consensus 126 gi~aa~~a 133 (149)
||+||++|
T Consensus 190 Di~aA~~a 197 (197)
T TIGR01548 190 DIITGRKA 197 (197)
T ss_pred HHHHHHhC
Confidence 99999986
No 50
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.71 E-value=3.9e-17 Score=120.13 Aligned_cols=112 Identities=18% Similarity=0.089 Sum_probs=86.6
Q ss_pred ccEEEEecCCccccccccccccCCCC---ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~---~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~ 98 (149)
+++++||+||||+++.+.....++.. .+.++ .++++|+++|++++|+||++... +...++++|+..+|+. .
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~~~---~ 74 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLYQG---Q 74 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEEec---c
Confidence 47899999999999644333222111 12233 37999999999999999999998 7999999999988875 3
Q ss_pred CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+|+|.....+. .++++++|+.+.|+.+++.++++||+...|
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v 117 (154)
T TIGR01670 75 SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAV 117 (154)
T ss_pred cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 66775555444 456779999999999999999999997544
No 51
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.71 E-value=7.9e-17 Score=120.24 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=88.2
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC-chHHHHHHHHHcCCCCCccccccc
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~ 98 (149)
..++++++|+||||+.. . ...++|++.++|++|+++|++++|+||++ ... +..+++.+++..++ ...
T Consensus 23 ~~v~~vv~D~Dgtl~~~------~--~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~~~---~~~ 90 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP------D--HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPVLP---HAV 90 (170)
T ss_pred CCCCEEEEecCCccccC------C--CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEEEc---CCC
Confidence 45799999999999973 1 23689999999999999999999999998 455 67777888875443 345
Q ss_pred CCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhhh
Q 032013 99 SCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~~ 141 (149)
||+|.....+. .++++++|+.+.|+. .+|.+|++|||+++.+.
T Consensus 91 KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~ 136 (170)
T TIGR01668 91 KPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVE 136 (170)
T ss_pred CCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence 88885444443 456779999999998 79999999999988763
No 52
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.70 E-value=4.8e-17 Score=124.53 Aligned_cols=120 Identities=23% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA 53 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~ 53 (149)
..++++++||+||||++.+..+. .-.+..++.||+
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 90 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGA 90 (219)
T ss_pred hccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCH
Confidence 34478999999999999643200 011335789999
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------------c--ccCCChhHHHHHH----hhCCCc
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------------V--RLSCCIMCIIFFL----FFFSIS 115 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------------~--~~~p~p~~~i~~~----~~~~~~ 115 (149)
.++|+.|+++|++++|+||+.... +...++.+|+..+|... . ...+.|.+.+|.. .+++++
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 169 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISPE 169 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCHH
Confidence 999999999999999999999887 79999999998887531 0 1122234466664 567789
Q ss_pred ceEEEeehHhHHHHHHHhCCchhh
Q 032013 116 AFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 116 ~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+|++++||.+++.+|++||+.+.+
T Consensus 170 ~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 170 NTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred HEEEEECCHHHHHHHHhCCCeEEe
Confidence 999999999999999999998643
No 53
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.69 E-value=1.2e-16 Score=115.93 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=69.2
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----ccCCChhHHHHHH--hhCCCcceEE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----RLSCCIMCIIFFL--FFFSISAFIL 119 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~~~p~p~~~i~~~--~~~~~~~~l~ 119 (149)
....||+.++|+.|+++|++++|+||+++.. +...++.+ +..+|+.+. ..||+|.+..++. .++++ +|++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence 4567999999999999999999999999988 68888887 667776541 2477775544444 45666 9999
Q ss_pred EeehHhHHHHHHHhC
Q 032013 120 FVDLFCFMYAAAYVG 134 (149)
Q Consensus 120 ~eDs~~gi~aa~~ag 134 (149)
++|++.+++||++||
T Consensus 140 iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDNLNDIEGARNAG 154 (154)
T ss_pred EeCCHHHHHHHHHcc
Confidence 999999999999998
No 54
>PLN02954 phosphoserine phosphatase
Probab=99.68 E-value=1.6e-16 Score=122.00 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=72.6
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC--CCcccc------------------cccCCChhHHH
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPM------------------VRLSCCIMCII 106 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~--~~f~~~------------------~~~~p~p~~~i 106 (149)
..++||+.++|++|+++|++++|+||+.... ++.+++.+|+. .+|... ...+++|.+..
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 4688999999999999999999999999998 79999999996 345310 01234564444
Q ss_pred HHHhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 107 FFLFFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 107 ~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+....+.++|+++.||.++++||+++|+.+++
T Consensus 162 ~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~ 194 (224)
T PLN02954 162 HIKKKHGYKTMVMIGDGATDLEARKPGGADLFI 194 (224)
T ss_pred HHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEE
Confidence 444455678999999999999999999998766
No 55
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.67 E-value=2.9e-16 Score=125.74 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=92.1
Q ss_pred CccEEEEecCCccccccc----cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC-Ccccc
Q 032013 21 LPRLVVFDLDYTLWPFYC----ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM 95 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~----~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~~~ 95 (149)
..+.+++|+|||+.+... .|... ....++|++.++|+.|+++|++++++||++... .+..++.+++.. +|+.+
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f~~i 234 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKV-KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWFDDL 234 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhc-ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCchhhh
Confidence 357899999999998422 12211 135789999999999999999999999999988 799999999986 77655
Q ss_pred cc-------------cCCChhHHHHHH--hhC-CCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 96 VR-------------LSCCIMCIIFFL--FFF-SISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 96 ~~-------------~~p~p~~~i~~~--~~~-~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.+ .+|+|....+.. .+. .+++|++|+|++++|.+|++|||+++-+
T Consensus 235 ~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 235 IGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred hCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 32 266664444443 344 4589999999999999999999998754
No 56
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.67 E-value=9.8e-17 Score=125.20 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=71.1
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
..++||+.++|++|+++ ++++++||++.. ++..|+..||+.+. ..||+|.++..+. .+++|++|+
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 56779999999999976 999999998754 26689988888762 3477774433333 467789999
Q ss_pred EEeeh-HhHHHHHHHhCCchhhhhh
Q 032013 119 LFVDL-FCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 119 ~~eDs-~~gi~aa~~ag~~~~~~~~ 142 (149)
.+.|+ ..+|.+|++|||+++.+.|
T Consensus 185 ~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 185 HVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred EEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 99999 5999999999999987765
No 57
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.67 E-value=1.9e-16 Score=119.00 Aligned_cols=93 Identities=16% Similarity=-0.013 Sum_probs=73.3
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCC--------hhHHHHHH---
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCC--------IMCIIFFL--- 109 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~--------p~~~i~~~--- 109 (149)
.+++||+.++|++|+++|++++|+||+.... ++..++.+|+..+|.... ..+|+ +.+.++..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 5689999999999999999999999999888 799999999887765321 11222 21123222
Q ss_pred -hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 110 -FFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 110 -~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.++++++|++++||.+++.+|++||+...+.
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~ 189 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISISLG 189 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC
Confidence 4567799999999999999999999988774
No 58
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.67 E-value=2.4e-16 Score=118.97 Aligned_cols=113 Identities=18% Similarity=0.104 Sum_probs=86.0
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHH---HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK---GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR 97 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~---e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~ 97 (149)
.+|+|++|+||||+++.......++ ...+-.. ..++.|+++|++++|+||++... +..+++.+|+..+|. +
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~--~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f~---g 93 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGE--ELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLYQ---G 93 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCC--EEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceeec---C
Confidence 4899999999999986332222222 1222222 57899999999999999999998 799999999988886 3
Q ss_pred cCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 98 LSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 98 ~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.++.|.+...+. .++++++|+.+.|+.+++.++++||+.+.|
T Consensus 94 ~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v 137 (183)
T PRK09484 94 QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAV 137 (183)
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence 455554433333 567789999999999999999999998654
No 59
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.66 E-value=1.8e-16 Score=115.80 Aligned_cols=114 Identities=14% Similarity=-0.087 Sum_probs=84.9
Q ss_pred cEEEEecCCcccccccc----cccc-------------CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 23 RLVVFDLDYTLWPFYCE----CCYE-------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 23 k~vifDlDGTLld~~~~----~~~~-------------~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
.++++|+||||+..... +... ...+.++||+.++|++|+ ++++++|+||++... ++.+++.
T Consensus 3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~~ 80 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLDL 80 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHHH
Confidence 46899999999996311 1100 122467999999999998 579999999999999 7999999
Q ss_pred cCCCCC-cccc----cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 86 LGIHSM-FVPM----VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 86 ~gl~~~-f~~~----~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+++..+ |+.+ ....++|. ++... .+.+|++|++||||++++++|.++|+++--
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred hCcCCCEeeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecC
Confidence 998654 4554 23344453 22222 567889999999999999999999987643
No 60
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.66 E-value=9.1e-16 Score=120.44 Aligned_cols=113 Identities=17% Similarity=0.060 Sum_probs=84.2
Q ss_pred ccEEEEecCCcccccccc-------ccc------------------cCCCCccCccHHHHHHHHHHCCceEEEEeCC---
Q 032013 22 PRLVVFDLDYTLWPFYCE-------CCY------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRS--- 73 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~-------~~~------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~--- 73 (149)
|-+|+||+||||+|+... +.. ......+.+++.++|++++++|++++++||+
T Consensus 63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~ 142 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPG 142 (237)
T ss_pred CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 458999999999997552 000 0122356666999999999999999999998
Q ss_pred -CchHHHHHHHHHcCCCCCcccccc------cCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 74 -PAPDIAKTFLHKLGIHSMFVPMVR------LSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 74 -~~~~i~~~~l~~~gl~~~f~~~~~------~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.... ++.+++.+|+..+|+.+.+ .||+| ..++. ..+ -|+.+.||.++|.||++||++++-.
T Consensus 143 k~~~~-a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~--~~~l~-~~~--i~i~vGDs~~DI~aAk~AGi~~I~V 210 (237)
T TIGR01672 143 KTDTV-SKTLAKNFHIPAMNPVIFAGDKPGQYQYTK--TQWIQ-DKN--IRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred cCHHH-HHHHHHHhCCchheeEEECCCCCCCCCCCH--HHHHH-hCC--CeEEEeCCHHHHHHHHHCCCCEEEE
Confidence 4445 6888889999998876532 34444 43332 223 3899999999999999999997654
No 61
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.64 E-value=1.8e-15 Score=105.17 Aligned_cols=114 Identities=26% Similarity=0.225 Sum_probs=87.2
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----ccc-
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VRL- 98 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~~- 98 (149)
+++||+||||++.+..... .....+.|++.++|++|+++|++++++||+.+.. +...++..++..+++.. ...
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYFDPVITSNGAAI 78 (139)
T ss_pred CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhhhheeccchhhh
Confidence 4799999999985322111 2335799999999999999999999999999888 79999999985555433 111
Q ss_pred -----------------CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 99 -----------------SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 99 -----------------~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+|+|.....+. .+.++++++.+.|+.+++.+|+++|++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 79 YYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred hcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 56664444444 334558899999999999999999998764
No 62
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=117.00 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=77.9
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
.++.|++.+.|+.++++ ++++++||+.... ....++++|+.++|+.+. ..||+|..+.+.. .++.|++|+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 67899999999999999 9999999998887 799999999999999872 3477774444443 556789999
Q ss_pred EEeehHhHH-HHHHHhCCchhhhhh
Q 032013 119 LFVDLFCFM-YAAAYVGCDLYVYKR 142 (149)
Q Consensus 119 ~~eDs~~gi-~aa~~ag~~~~~~~~ 142 (149)
.+.||+.-. .+|+++||+++.+.|
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~ 200 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINR 200 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECC
Confidence 999987666 999999999986654
No 63
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.60 E-value=7.6e-15 Score=109.84 Aligned_cols=121 Identities=33% Similarity=0.474 Sum_probs=83.2
Q ss_pred CccEEEEecCCcccccccccc----------------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~----------------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
.|++|+||+|+|||+.|++.+ +.++.+.++|++.++|+.|+++|+++++||.+.....+++.|+
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 489999999999999988843 4567789999999999999999999999997766665899999
Q ss_pred HcCCC----------CCcccccccCCChhHHHHH----HhhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 85 KLGIH----------SMFVPMVRLSCCIMCIIFF----LFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 85 ~~gl~----------~~f~~~~~~~p~p~~~i~~----~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
.+++. ++|+..+++..+- ...|- +.+++.++-|+|.|-.--+....+-|...+...+
T Consensus 82 ~l~i~~~~~~~~~~~~~F~~~eI~~gsK-~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFDYLEIYPGSK-TTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp HTT-C----------CCECEEEESSS-H-HHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS
T ss_pred hcCCCccccccccchhhcchhheecCch-HHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCC
Confidence 99999 9999988776533 23333 3677778999999999999998888877665443
No 64
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.59 E-value=7.8e-15 Score=119.35 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=91.6
Q ss_pred CccEEEEecCCccccccccccccCC---CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH----cCCCCCcc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDE---IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMFV 93 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~---~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~----~gl~~~f~ 93 (149)
.+|++++|+|+|||.+-... .... -..++|++.++|+.|+++|++++|+|+++... +...+++ +++.++|+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e-~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f~ 79 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE-DGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDFD 79 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc-CCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHee
Confidence 47899999999999862111 1111 12367999999999999999999999999988 7999999 89999998
Q ss_pred ccc-ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013 94 PMV-RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 94 ~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
.+. ..+|+|.....+. .++++++|+++.|++..+.++++++=+
T Consensus 80 ~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 80 ARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence 864 3478886666665 556779999999999999999998754
No 65
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.59 E-value=4.5e-15 Score=115.37 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=78.9
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---CC----CCCcccccccCCChhHHHHHH--hhCCCcc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GI----HSMFVPMVRLSCCIMCIIFFL--FFFSISA 116 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---gl----~~~f~~~~~~~p~p~~~i~~~--~~~~~~~ 116 (149)
..+++||+.++|++|+++|++++|+||++... ....+++. ++ ..+|+...+.||+|..+..+. .+++|++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 35799999999999999999999999999887 57777775 43 345565567788885555544 5678899
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
|++++|+..++.||++|||+++.+.|
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~ti~v~r 197 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHTGQLVR 197 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEEEC
Confidence 99999999999999999999987765
No 66
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.58 E-value=1.3e-14 Score=111.85 Aligned_cols=95 Identities=14% Similarity=-0.026 Sum_probs=71.6
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--Cc--ccc------cccCCChhH----------
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MF--VPM------VRLSCCIMC---------- 104 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f--~~~------~~~~p~p~~---------- 104 (149)
+..+++||+.++|++|+++|++++|+||+.... ++.+++++ +.. .+ +.. ...+|+|.+
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 148 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCC 148 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCc
Confidence 346899999999999999999999999999888 79999987 543 22 111 234666643
Q ss_pred --HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 105 --IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 105 --~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
.+--..+..+++|+.++||.+++.||++||+ ++...+
T Consensus 149 K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~-~~a~~~ 187 (219)
T PRK09552 149 KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADK-VFARDF 187 (219)
T ss_pred hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCc-ceeHHH
Confidence 2222245677899999999999999999999 444333
No 67
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.57 E-value=1.8e-14 Score=118.89 Aligned_cols=118 Identities=15% Similarity=0.045 Sum_probs=89.4
Q ss_pred ccEEEEecCCcccccc--ccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---------------CchHHHHHHHH
Q 032013 22 PRLVVFDLDYTLWPFY--CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTFLH 84 (149)
Q Consensus 22 ~k~vifDlDGTLld~~--~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---------------~~~~i~~~~l~ 84 (149)
.+.++||.||||+... .+.....+...++||+.++|++|+++|++++|+||+ +... +..+++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL~ 80 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIFE 80 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHHH
Confidence 4689999999999841 111223344789999999999999999999999996 2334 567788
Q ss_pred HcCCCCCcccc-----------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 85 KLGIHSMFVPM-----------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 85 ~~gl~~~f~~~-----------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
.+++. |+.+ ...||+|....++. .++++++|+.+.|+.+++++|++|||+++.+++
T Consensus 81 ~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 81 SQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred HcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 88874 3322 24588885555444 356779999999999999999999999887643
No 68
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.55 E-value=2.5e-14 Score=108.30 Aligned_cols=91 Identities=14% Similarity=-0.005 Sum_probs=71.4
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cc---cCCChhHHHHHHhhC
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VR---LSCCIMCIIFFLFFF 112 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~---~~p~p~~~i~~~~~~ 112 (149)
+..+++||+.++|+.|+++ ++++|+||+.... ++..++++|+..+|... .+ .+|+|........+.
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 3456789999999999999 9999999999998 79999999998877531 11 133443333333455
Q ss_pred CCcceEEEeehHhHHHHHHHhCCch
Q 032013 113 SISAFILFVDLFCFMYAAAYVGCDL 137 (149)
Q Consensus 113 ~~~~~l~~eDs~~gi~aa~~ag~~~ 137 (149)
.+++|+.++||.+++.++++||+.+
T Consensus 143 ~~~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 143 LGYRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred hCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 6689999999999999999999865
No 69
>PLN02811 hydrolase
Probab=99.54 E-value=1.5e-14 Score=111.33 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=73.6
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------cccCCChhHHHHHH--hh---CC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------VRLSCCIMCIIFFL--FF---FS 113 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------~~~~p~p~~~i~~~--~~---~~ 113 (149)
..++||+.++|+.|+++|++++|+||+.+..+....++..++.++|+.+ ...||+|..+..+. .+ ++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 5689999999999999999999999998765223344444666666543 23477885544444 32 77
Q ss_pred CcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013 114 ISAFILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 114 ~~~~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
+++|++++|+..|++||++|||++|.+.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~ 184 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVP 184 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEe
Confidence 8999999999999999999999998874
No 70
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.54 E-value=2.6e-14 Score=116.76 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA 53 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~ 53 (149)
...+++++||+||||+..+.... ...+..++.||+
T Consensus 107 ~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l~pGa 186 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPLMPGL 186 (322)
T ss_pred ccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCCChhH
Confidence 45589999999999997543300 001246799999
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc----------------ccccCCChhHHHHHH--hhCCCc
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP----------------MVRLSCCIMCIIFFL--FFFSIS 115 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~----------------~~~~~p~p~~~i~~~--~~~~~~ 115 (149)
.+++++|+++|++++|+||+.... ++..++++++...+.. +...+|+|.....++ .+++++
T Consensus 187 ~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~~ 265 (322)
T PRK11133 187 TELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLA 265 (322)
T ss_pred HHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCChh
Confidence 999999999999999999999877 6888889998764421 011245664444443 457789
Q ss_pred ceEEEeehHhHHHHHHHhCCchhh
Q 032013 116 AFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 116 ~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+|+++.|+.|++.++.+||+.+.+
T Consensus 266 qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 266 QTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred hEEEEECCHHHHHHHHHCCCeEEe
Confidence 999999999999999999986654
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=107.90 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=83.2
Q ss_pred ccEEEEecCCcccccccc-------cc-----------------c-cCCCCccCccHHHHHHHHHHCCceEEEEeCCC--
Q 032013 22 PRLVVFDLDYTLWPFYCE-------CC-----------------Y-EDEIPYLYPHAKGILEALKEKGIHVAVASRSP-- 74 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~-------~~-----------------~-~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~-- 74 (149)
|-+|+||+|||++++.++ +. . ......+.||+.++|++|+++|++++++|||+
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 558999999999985332 00 0 02335688889999999999999999999975
Q ss_pred -chHHHHHHHHHcCC--CCCcccccc----cCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013 75 -APDIAKTFLHKLGI--HSMFVPMVR----LSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 75 -~~~i~~~~l~~~gl--~~~f~~~~~----~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
....++.+++.+|+ .++|..+.. .|+++.. .++ .. ..|+.++|+.+++.||++||++.+-..
T Consensus 143 k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~--~l~-~~--~i~I~IGDs~~Di~aA~~AGi~~I~v~ 211 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ--WLK-KK--NIRIFYGDSDNDITAAREAGARGIRIL 211 (237)
T ss_pred ccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH--HHH-hc--CCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence 23225666777999 777765532 2455632 222 22 348999999999999999999987543
No 72
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.51 E-value=1e-14 Score=107.89 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=63.6
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcce
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
...++||+.++|+ +++|+||++... +...++++|+..+|+.+ ...||+|..+..+. .+++|++|
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 3457888888888 389999999998 68999999999998764 24477774433333 56788999
Q ss_pred EEEeehHhHHHHHHHh
Q 032013 118 ILFVDLFCFMYAAAYV 133 (149)
Q Consensus 118 l~~eDs~~gi~aa~~a 133 (149)
+.+.|+...+.+|+++
T Consensus 160 l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 160 LMVAAHQWDLIGARKF 175 (175)
T ss_pred EeEecChhhHHHHhcC
Confidence 9999999999999875
No 73
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.44 E-value=4.4e-13 Score=99.56 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=70.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc--------------------CC----Ch
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL--------------------SC----CI 102 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~--------------------~p----~p 102 (149)
.++.||+.++|+.|+++|++++|+||+.... ++..++.+++..+|+.+... .+ .+
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 5799999999999999999999999999888 79999999998888764310 01 12
Q ss_pred hHHHHHHhhCC-CcceEEEeehHhHHHHHHHhC
Q 032013 103 MCIIFFLFFFS-ISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 103 ~~~i~~~~~~~-~~~~l~~eDs~~gi~aa~~ag 134 (149)
.+.++...... +++|+.+.|+.+++.||++|+
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d 182 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSD 182 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhchHhcCC
Confidence 23566665444 889999999999999999985
No 74
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.41 E-value=1e-12 Score=100.95 Aligned_cols=96 Identities=11% Similarity=-0.108 Sum_probs=71.8
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc---c------cccCCChhH------------
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP---M------VRLSCCIMC------------ 104 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~---~------~~~~p~p~~------------ 104 (149)
..++.||+.++|++|+++|++++|+||+.... ++.+++.++...++.+ . ...+|+|.+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 46899999999999999999999999999887 7888988754444422 1 233666633
Q ss_pred HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhhh
Q 032013 105 IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 105 ~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~~ 143 (149)
.+.-.....+++++++.|+.+++.+|++||+ +++-++|
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~-~~ar~~l 184 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL-CFARDYL 184 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe-eEehHHH
Confidence 2222234566889999999999999999998 4444433
No 75
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=96.73 Aligned_cols=113 Identities=23% Similarity=0.267 Sum_probs=90.5
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS 99 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~ 99 (149)
..++.+++|+|+||+.. .+ ....|.+++.++.+++.|+++.|+||+.... +....+.+|++..+. -.|
T Consensus 26 ~Gikgvi~DlDNTLv~w-----d~---~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~fi~~---A~K 93 (175)
T COG2179 26 HGIKGVILDLDNTLVPW-----DN---PDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPFIYR---AKK 93 (175)
T ss_pred cCCcEEEEeccCceecc-----cC---CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCceeec---ccC
Confidence 45899999999999984 22 2577999999999999999999999999888 788999999864332 347
Q ss_pred CChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhhhhhh
Q 032013 100 CCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVYKRLI 144 (149)
Q Consensus 100 p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~~~~ 144 (149)
|.+-++--+. .++++++|+++=|. ...|.+|+++||++|.++-++
T Consensus 94 P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 94 PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred ccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 7774433222 56888999888876 579999999999999887654
No 76
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.37 E-value=1.8e-12 Score=104.20 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=58.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+++|+||+||||++. .+.+.+. ||+.++|++|+++|++++|+||+.+.. +...++.+|+..+|+.+
T Consensus 126 ~kvIvFDLDgTLi~~-------~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YFdvI 192 (301)
T TIGR01684 126 PHVVVFDLDSTLITD-------EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYFDII 192 (301)
T ss_pred ceEEEEecCCCCcCC-------CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCcccCEE
Confidence 789999999999983 2224455 999999999999999999999999999 79999999999999765
No 77
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.34 E-value=4.4e-12 Score=99.18 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=76.7
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHH--HHHHHcCCCC-Ccccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPMVR 97 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~--~~l~~~gl~~-~f~~~~~ 97 (149)
.+++++||+||||+++ ..++||+.++|++|+++|++++++||+++.. .. ..++++|+.. +|+.+..
T Consensus 7 ~~~~~~~D~dG~l~~~----------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~~~Ii~ 75 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDG----------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLPEMIIS 75 (242)
T ss_pred cCCEEEEecccccccC----------CccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCccccceEEc
Confidence 3789999999999973 2579999999999999999999999998876 45 7889999987 7765432
Q ss_pred cCCChhHHHHHH-----hhCCCcceEEEeehHhHHHHHHHhC
Q 032013 98 LSCCIMCIIFFL-----FFFSISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 98 ~~p~p~~~i~~~-----~~~~~~~~l~~eDs~~gi~aa~~ag 134 (149)
+.....-++. .+..+++|+++.|+..++.+....|
T Consensus 76 --s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 76 --SGEIAVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred --cHHHHHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence 2221112222 2355688999999998888765444
No 78
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.32 E-value=3.8e-12 Score=99.72 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSIS 115 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~ 115 (149)
.....+++.+++++||+.|..++++||-.... +..+..+++..|||.+. .-||+| .||.. .+++|+
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~--~~~l~~~~l~~~fD~vv~S~e~g~~KPDp--~If~~al~~l~v~Pe 186 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRL--RLLLLPLGLSAYFDFVVESCEVGLEKPDP--RIFQLALERLGVKPE 186 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHHH--HHHhhccCHHHhhhhhhhhhhhccCCCCh--HHHHHHHHHhCCChH
Confidence 45677888999999999999999999998664 78899999999999762 336776 77776 678999
Q ss_pred ceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013 116 AFILFVDLF-CFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~~ 142 (149)
+|+.+-|+. |.+++|+++||+++++-.
T Consensus 187 e~vhIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 187 ECVHIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred HeEEecCccccccHhHHHcCCEEEEEcc
Confidence 999999765 669999999999998654
No 79
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.31 E-value=2.6e-12 Score=97.00 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=71.6
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-----c-ccCC---------ChhHHHHH----
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-----V-RLSC---------CIMCIIFF---- 108 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-----~-~~~p---------~p~~~i~~---- 108 (149)
.++|++.+++++++++|++++|+|+++... ++.+++.+|+..+|... + .+.+ .+......
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 578999999999999999999999999888 79999999998877541 1 1111 11122221
Q ss_pred HhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 109 LFFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 109 ~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
..++++++|+++.||++++.++..||..++|.
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 24567789999999999999999999888765
No 80
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.30 E-value=7.2e-12 Score=96.57 Aligned_cols=93 Identities=18% Similarity=0.086 Sum_probs=77.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------------ccCCChhHHHHHH--hhC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------------RLSCCIMCIIFFL--FFF 112 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------------~~~p~p~~~i~~~--~~~ 112 (149)
.++-+-.+++|-.|+.++ ..+.||+.+.. +...++.+|+.+.|+.+. +-||+|.++-... .++
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 556667789999998886 77899999999 899999999999998762 2378887766655 556
Q ss_pred C-CcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 113 S-ISAFILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 113 ~-~~~~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
+ |.++++|+||..-|++|++.|+++++.-|
T Consensus 176 ~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred CCcCceEEEcCchhhHHHHHhccceeEEEEe
Confidence 5 89999999999999999999999987644
No 81
>PTZ00445 p36-lilke protein; Provisional
Probab=99.30 E-value=9.4e-12 Score=95.79 Aligned_cols=123 Identities=14% Similarity=0.007 Sum_probs=86.3
Q ss_pred CCCccEEEEecCCccccc-cccc-ccc----CCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--------------H
Q 032013 19 ENLPRLVVFDLDYTLWPF-YCEC-CYE----DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------I 78 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~-~~~~-~~~----~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--------------i 78 (149)
...+|+|++|+|.||+.- ..-| .+. .-...+.|...++++.|++.|++++|||=++... +
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~l 119 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRM 119 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHH
Confidence 456999999999999981 1111 111 0011367889999999999999999999655422 4
Q ss_pred HHHHHHHcCCCC-----------Ccccc------cccCCChhHHHH--HH----hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 79 AKTFLHKLGIHS-----------MFVPM------VRLSCCIMCIIF--FL----FFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 79 ~~~~l~~~gl~~-----------~f~~~------~~~~p~p~~~i~--~~----~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
++..++..+-.. +++.. ...||.|..-.| .. .++.|++||+|+|.+.-+.+|.+.|+
T Consensus 120 i~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi 199 (219)
T PTZ00445 120 VEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGY 199 (219)
T ss_pred HHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCC
Confidence 677887554321 12222 234777744115 22 66888999999999999999999999
Q ss_pred chhhhh
Q 032013 136 DLYVYK 141 (149)
Q Consensus 136 ~~~~~~ 141 (149)
+++.++
T Consensus 200 ~ai~f~ 205 (219)
T PTZ00445 200 IALHVT 205 (219)
T ss_pred EEEEcC
Confidence 999876
No 82
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.26 E-value=4e-11 Score=94.44 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=42.1
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---CchHHHHHHHHHcCC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI 88 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---~~~~i~~~~l~~~gl 88 (149)
++++||+||||+++ . .+.|++.++|++|+++|++++++||+ +... +...++.+|+
T Consensus 2 ~~~~~D~DGtl~~~------~----~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~ 59 (249)
T TIGR01457 2 KGYLIDLDGTMYKG------K----ERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDI 59 (249)
T ss_pred CEEEEeCCCceEcC------C----eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence 67999999999983 1 36689999999999999999999983 3343 3444444443
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.25 E-value=4.1e-11 Score=103.46 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=85.2
Q ss_pred CccEEEEecCCccccccc--cccccCCCC-ccCccHHHHHHHHHHCCceEEEEeCCCc------------hHHHHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYC--ECCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLHK 85 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~--~~~~~~~~~-~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~------------~~i~~~~l~~ 85 (149)
..|+++||+||||+.... .+..+.+.. .++||+.+.|++|+++|++++|+||.+. .. +..+++.
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL~~ 245 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIVAK 245 (526)
T ss_pred cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHHHH
Confidence 358999999999997310 011111112 3689999999999999999999999876 34 5788899
Q ss_pred cCCCCCcccc------cccCCChhHHHHHHhh------CCCcceEEEeehHhHHHHHHHhCCc
Q 032013 86 LGIHSMFVPM------VRLSCCIMCIIFFLFF------FSISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 86 ~gl~~~f~~~------~~~~p~p~~~i~~~~~------~~~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
+|+. |+.. ...||+|....++... +++++|+.+.|+...+++|++||..
T Consensus 246 lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~~ 306 (526)
T TIGR01663 246 LGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKK 306 (526)
T ss_pred cCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCCC
Confidence 9875 5543 2348888777776643 5668999999999999999999863
No 84
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.24 E-value=3.2e-11 Score=92.62 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=68.0
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------c----ccCCChhHHHHHHhhCC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------V----RLSCCIMCIIFFLFFFS 113 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~----~~~p~p~~~i~~~~~~~ 113 (149)
++++||+.++|+++++++ +++|+||+.... +..+++.+|+..+|... . ..++++...+-.....+
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~ 144 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY 144 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC
Confidence 578999999999999985 999999999888 79999999998877521 1 12333322222212222
Q ss_pred CcceEEEeehHhHHHHHHHhCCchhh
Q 032013 114 ISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 114 ~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+|+++.||.|++.++.+||..+.+
T Consensus 145 -~~~v~vGDs~nDl~ml~~Ag~~ia~ 169 (203)
T TIGR02137 145 -YRVIAAGDSYNDTTMLSEAHAGILF 169 (203)
T ss_pred -CCEEEEeCCHHHHHHHHhCCCCEEe
Confidence 4899999999999999999987654
No 85
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.23 E-value=2.6e-11 Score=89.37 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc--------cc----CCCh----hHHHHH
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV--------RL----SCCI----MCIIFF 108 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~--------~~----~p~p----~~~i~~ 108 (149)
+..++.||+.+++++++++|++++|+|++.... ++..++.+|+..+|.... .. ++.| .+.+..
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 345678999999999999999999999999888 799999999987654321 00 0121 112222
Q ss_pred H----hhCCCcceEEEeehHhHHHHHHHh
Q 032013 109 L----FFFSISAFILFVDLFCFMYAAAYV 133 (149)
Q Consensus 109 ~----~~~~~~~~l~~eDs~~gi~aa~~a 133 (149)
. .++++++++.+-||.+++.+++.|
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 1 346678999999999999998765
No 86
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.21 E-value=1.2e-10 Score=93.31 Aligned_cols=88 Identities=17% Similarity=0.048 Sum_probs=67.4
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------------cccCCChhH-------H
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------------VRLSCCIMC-------I 105 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------------~~~~p~p~~-------~ 105 (149)
..+.+.||+.+++++|+++|++++|+|++.... ++..++++|+...+..+ ..++|.|+. .
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~ 196 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHD 196 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHH
Confidence 358899999999999999999999999999988 79999999985433222 123566633 4
Q ss_pred HHH--H--hh--CCCcceEEEeehHhHHHHHHHh
Q 032013 106 IFF--L--FF--FSISAFILFVDLFCFMYAAAYV 133 (149)
Q Consensus 106 i~~--~--~~--~~~~~~l~~eDs~~gi~aa~~a 133 (149)
++. + .+ .++++|++++||.+|+.+|.-.
T Consensus 197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 443 2 22 5678999999999999996433
No 87
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.21 E-value=1e-10 Score=80.47 Aligned_cols=81 Identities=22% Similarity=0.197 Sum_probs=60.2
Q ss_pred EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccCCCh
Q 032013 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLSCCI 102 (149)
Q Consensus 25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~p~p 102 (149)
++||+||||+++ ..+.||+.++|++|+++|+++.++||++... .....|+.+|+. ++..++..|..
T Consensus 1 ~l~D~dGvl~~g----------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~ 68 (101)
T PF13344_consen 1 FLFDLDGVLYNG----------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGM 68 (101)
T ss_dssp EEEESTTTSEET----------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHH
T ss_pred CEEeCccEeEeC----------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHH
Confidence 689999999974 2589999999999999999999999987433 145667888886 56667888888
Q ss_pred hHHHHHHhhCCCcce
Q 032013 103 MCIIFFLFFFSISAF 117 (149)
Q Consensus 103 ~~~i~~~~~~~~~~~ 117 (149)
...-|++...+...+
T Consensus 69 ~~~~~l~~~~~~~~v 83 (101)
T PF13344_consen 69 AAAEYLKEHKGGKKV 83 (101)
T ss_dssp HHHHHHHHHTTSSEE
T ss_pred HHHHHHHhcCCCCEE
Confidence 778888875343444
No 88
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.21 E-value=4.1e-11 Score=96.54 Aligned_cols=68 Identities=28% Similarity=0.372 Sum_probs=58.5
Q ss_pred CCccEEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
..+++++||+||||++ ++ +.+.+. |++.++|++|+++|++++|+||++++. +...++.+|+..+|+.+
T Consensus 126 ~~~~~i~~D~D~TL~~------~~-~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yFDvI 194 (303)
T PHA03398 126 EIPHVIVFDLDSTLIT------DE-EPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYFDII 194 (303)
T ss_pred eeccEEEEecCCCccC------CC-CccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccccEE
Confidence 3478999999999998 32 224444 999999999999999999999999998 79999999999998754
No 89
>PLN02645 phosphoglycolate phosphatase
Probab=99.20 E-value=1.6e-10 Score=93.84 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=76.7
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~ 98 (149)
.+++++||+||||+++ . .++||+.++|++|+++|++++++||++.... ....++.+|+.. ...++.
T Consensus 27 ~~~~~~~D~DGtl~~~------~----~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~--~~~~I~ 94 (311)
T PLN02645 27 SVETFIFDCDGVIWKG------D----KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV--TEEEIF 94 (311)
T ss_pred hCCEEEEeCcCCeEeC------C----ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEe
Confidence 3789999999999973 1 4779999999999999999999999985431 234557788753 334566
Q ss_pred CCChhHHHHHHh-hCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 99 SCCIMCIIFFLF-FFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 99 ~p~p~~~i~~~~-~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
.+......|++. .....+.+.+=++..-..++..+|++++
T Consensus 95 ts~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 95 SSSFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYL 135 (311)
T ss_pred ehHHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEe
Confidence 666555666663 3332334555577777888889998754
No 90
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.19 E-value=5.1e-11 Score=94.27 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=56.3
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
++|++++|+||||++ +++ .+.+.+.++|++|+++|++++++|||+... +...++.+++..++.+.
T Consensus 1 m~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~ 65 (272)
T PRK15126 1 MARLAAFDMDGTLLM------PDH---HLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAYLITG 65 (272)
T ss_pred CccEEEEeCCCcCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCcEEec
Confidence 378999999999998 332 478899999999999999999999999999 79999999998765544
No 91
>PRK10976 putative hydrolase; Provisional
Probab=99.19 E-value=5.1e-11 Score=93.76 Aligned_cols=64 Identities=31% Similarity=0.365 Sum_probs=55.5
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+|++++|+||||++ +++ .+.|.+.++|++++++|++++++|||+... +...++.+++..++.+.
T Consensus 2 ikli~~DlDGTLl~------~~~---~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~ 65 (266)
T PRK10976 2 YQVVASDLDGTLLS------PDH---TLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSYMITS 65 (266)
T ss_pred ceEEEEeCCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCeEEEc
Confidence 68999999999998 332 477889999999999999999999999998 68899999988765544
No 92
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.18 E-value=5.9e-11 Score=91.25 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+|++++|+||||++ +++ .+.|.+.++|++|+++|++++++|||+... +...++.+++..++...
T Consensus 3 ~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~i~~ 66 (230)
T PRK01158 3 IKAIAIDIDGTITD------KDR---RLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGPVIAE 66 (230)
T ss_pred eeEEEEecCCCcCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCcEEEe
Confidence 68999999999998 232 477899999999999999999999999998 68888999987665433
No 93
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.18 E-value=7.1e-11 Score=92.83 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=55.0
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+|++++|+||||++ +++ .+.|...++|++++++|++++++|||+... +...++.+++..++.+.
T Consensus 3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~ 66 (272)
T PRK10530 3 YRVIALDLDGTLLT------PKK---TILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDTPAICC 66 (272)
T ss_pred ccEEEEeCCCceEC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCCEEEc
Confidence 78999999999998 232 477889999999999999999999999998 68999999987655443
No 94
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.16 E-value=8.7e-11 Score=93.31 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=57.1
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
++|++++|+||||++. +. .+.+++.++|++|+++|++++++||++... +...++.+++..++...+
T Consensus 3 ~~kli~~DlDGTLl~~------~~---~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~i~~n 68 (273)
T PRK00192 3 MKLLVFTDLDGTLLDH------HT---YSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPFIVEN 68 (273)
T ss_pred cceEEEEcCcccCcCC------CC---cCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCEEEEc
Confidence 5899999999999982 22 366889999999999999999999999998 799999999987776654
No 95
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.15 E-value=1.1e-10 Score=89.43 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=54.9
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+|+|++|+||||++ +++ .+.|.+.+.|++|+++|++++++|||+... +..+++.+++..++...
T Consensus 1 ik~v~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~~i~~ 64 (215)
T TIGR01487 1 IKLVAIDIDGTLTE------PNR---MISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGPVVAE 64 (215)
T ss_pred CcEEEEecCCCcCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCcEEEc
Confidence 47899999999997 232 477899999999999999999999999999 68999999987665543
No 96
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.13 E-value=6.5e-11 Score=87.82 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=85.1
Q ss_pred cEEEEecCCccccccccccc---------------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~---------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
+++++|+|+||+.....-.. ..-.+...||+.++|++|.+. +.++|.|+++... ++.+++.++
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD 79 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence 46999999999975211100 011246889999999999988 9999999999998 899999999
Q ss_pred CCC-Cccccc----ccCCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013 88 IHS-MFVPMV----RLSCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 88 l~~-~f~~~~----~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
... +|+..- .....|. |.+ .+.+++++++++|++..+.++.++|+++.-|.
T Consensus 80 p~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 80 RGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred cCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC
Confidence 765 665442 2222231 333 45667899999999999999999999877654
No 97
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.12 E-value=1.8e-10 Score=90.62 Aligned_cols=66 Identities=33% Similarity=0.583 Sum_probs=58.1
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
+++++++|+||||++ ++. .+.+.+.++|++++++|++++++|||+... +..+++.+++..++.+.+
T Consensus 2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~~~I~~N 67 (264)
T COG0561 2 MIKLLAFDLDGTLLD------SNK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDGPLITFN 67 (264)
T ss_pred CeeEEEEcCCCCccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCccEEEeC
Confidence 478999999999998 332 388999999999999999999999999998 799999999998666654
No 98
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.11 E-value=5.8e-10 Score=84.28 Aligned_cols=122 Identities=14% Similarity=0.004 Sum_probs=86.0
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---------------chHHHHHHHHHc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHKL 86 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---------------~~~i~~~~l~~~ 86 (149)
.+++++|.||||..-...+-...+...+.||+.+++..|++.|++++++||.+ ... ....|+..
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~-m~~~l~~~ 83 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNK-MLKILASQ 83 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHH-HHHHHHHc
Confidence 67899999999998433122233446789999999999999999999999954 122 34556666
Q ss_pred CC--CCCcccc-------cccCCChhHHHHHHh--hCCCcceEEEeehHhHHHHHHHhCCchhhhhhhh
Q 032013 87 GI--HSMFVPM-------VRLSCCIMCIIFFLF--FFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLI 144 (149)
Q Consensus 87 gl--~~~f~~~-------~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~~~ 144 (149)
|. +..+-+. ...||+|.=...... .+.++...++=|+...|++|.+||++-+.|.+-+
T Consensus 84 gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~ 152 (181)
T COG0241 84 GVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGI 152 (181)
T ss_pred CCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCc
Confidence 63 3322221 244777733333333 3666888999999999999999999988776643
No 99
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.10 E-value=2.4e-10 Score=92.14 Aligned_cols=65 Identities=25% Similarity=0.270 Sum_probs=56.1
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
+|+|++||||||+|+ +. ...+.+.++|++|+++|++++++||++..+ +..+.+.+++..+|...+
T Consensus 1 ~KLIftDLDGTLLd~------~~---~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~I~eN 65 (302)
T PRK12702 1 MRLVLSSLDGSLLDL------EF---NSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPFICED 65 (302)
T ss_pred CcEEEEeCCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEEeC
Confidence 478999999999984 21 356779999999999999999999999999 699999999988777664
No 100
>PRK08238 hypothetical protein; Validated
Probab=99.10 E-value=5.5e-10 Score=95.68 Aligned_cols=113 Identities=17% Similarity=0.050 Sum_probs=82.2
Q ss_pred cEEEEecCCcccccccccc------------------------------------ccCCCCccCccHHHHHHHHHHCCce
Q 032013 23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH 66 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~------------------------------------~~~~~~~~~pg~~e~L~~Lk~~Gi~ 66 (149)
.-+++|+||||++++.-+. -+....+..|++.+.+++++++|++
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~ 90 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK 90 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence 3489999999998644311 1223346789999999999999999
Q ss_pred EEEEeCCCchHHHHHHHHHcCC-CCCcccc--cccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCch
Q 032013 67 VAVASRSPAPDIAKTFLHKLGI-HSMFVPM--VRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDL 137 (149)
Q Consensus 67 i~IaT~~~~~~i~~~~l~~~gl-~~~f~~~--~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~ 137 (149)
++++||+++.. ++.+++++|+ +..+... ...+|+|.+.... ..++.++|..+.||.+++.+++.||=.+
T Consensus 91 v~LaTas~~~~-a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~-~~l~~~~~~yvGDS~~Dlp~~~~A~~av 162 (479)
T PRK08238 91 LVLATASDERL-AQAVAAHLGLFDGVFASDGTTNLKGAAKAAALV-EAFGERGFDYAGNSAADLPVWAAARRAI 162 (479)
T ss_pred EEEEeCCCHHH-HHHHHHHcCCCCEEEeCCCccccCCchHHHHHH-HHhCccCeeEecCCHHHHHHHHhCCCeE
Confidence 99999999988 7999999997 2222111 2345555444333 3345566888899999999999999433
No 101
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.09 E-value=2.6e-10 Score=89.80 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=51.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
+|++++|+||||++ +++ .+.+.+.++|++|+++|++++++|||+... +...++.+++.
T Consensus 3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~ 60 (270)
T PRK10513 3 IKLIAIDMDGTLLL------PDH---TISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHME 60 (270)
T ss_pred eEEEEEecCCcCcC------CCC---ccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCC
Confidence 78999999999998 332 477899999999999999999999999999 68999999875
No 102
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.07 E-value=3.5e-10 Score=89.73 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=54.9
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV 96 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~ 96 (149)
-+++|++|+||||++ ++. .+.+.+.++|++|+++|++++++|||+... +..+++.+++. .++.+.+
T Consensus 6 ~~~lI~~DlDGTLL~------~~~---~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~~~~~I~~N 72 (271)
T PRK03669 6 DPLLIFTDLDGTLLD------SHT---YDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQGLPLIAEN 72 (271)
T ss_pred CCeEEEEeCccCCcC------CCC---cCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCCCCcEEEeC
Confidence 378999999999997 322 356788999999999999999999999999 79999999985 3555443
No 103
>COG4996 Predicted phosphatase [General function prediction only]
Probab=99.05 E-value=9.7e-10 Score=78.92 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=78.4
Q ss_pred cEEEEecCCcccccccc---------------ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 23 RLVVFDLDYTLWPFYCE---------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 23 k~vifDlDGTLld~~~~---------------~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
++++||.|||+||++.. .++.+..+.++|.+.+++++++..|+-+..+|-+...- +.+.|+.++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~ 79 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD 79 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence 46899999999998554 12556678999999999999999999999999888777 789999999
Q ss_pred CCCCcccccccCCChhHHHHH---------Hhh--CCCcceEEEeehHh
Q 032013 88 IHSMFVPMVRLSCCIMCIIFF---------LFF--FSISAFILFVDLFC 125 (149)
Q Consensus 88 l~~~f~~~~~~~p~p~~~i~~---------~~~--~~~~~~l~~eDs~~ 125 (149)
+.+||.. ...+|+|--+.-+ +.+ +.|++-+.|+|-.-
T Consensus 80 ~~~yFhy-~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~i 127 (164)
T COG4996 80 LLQYFHY-IVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRI 127 (164)
T ss_pred hhhhEEE-EEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccc
Confidence 9999975 4568888433222 122 55667777777543
No 104
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.03 E-value=4.4e-10 Score=82.72 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHH--HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR 97 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~--e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~ 97 (149)
+++|++++|+||||+|+..++..+++..+.+ +++ -.++.|.+.|++++|+|++.... ++...+.+|+..+|....
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaF-nv~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~qG~~- 82 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAF-NVRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLYQGIS- 82 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeee-eccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceeeechH-
Confidence 4589999999999999988877777766665 444 45899999999999999999998 799999999988776532
Q ss_pred cCCChhH--HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 98 LSCCIMC--IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 98 ~~p~p~~--~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
-+-.+ .+-.+.++.+++|..+=|-.+.+-.-.+.|..+-
T Consensus 83 --dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a 123 (170)
T COG1778 83 --DKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVA 123 (170)
T ss_pred --hHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccc
Confidence 22222 2333366777888888888888887777775543
No 105
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.03 E-value=6.5e-10 Score=85.26 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=51.7
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV 96 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~ 96 (149)
+|++||||||++. +. ...+.+.++|++|+++|++++++|||+... +...++.+++. .++.+.+
T Consensus 1 ~i~~DlDGTLL~~------~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~~~~~I~~N 64 (221)
T TIGR02463 1 WVFSDLDGTLLDS------HS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLTGDPYIAEN 64 (221)
T ss_pred CEEEeCCCCCcCC------CC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCCcEEEeC
Confidence 3899999999983 22 244558999999999999999999999999 79999999987 5555543
No 106
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.02 E-value=8.1e-10 Score=86.59 Aligned_cols=62 Identities=35% Similarity=0.582 Sum_probs=52.6
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
++++|+||||++ .++ .+.+.+.++|++|+++|++++++|||+... +...++.+++..++.+.
T Consensus 1 li~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~~~I~~ 62 (256)
T TIGR00099 1 LIFIDLDGTLLN------DDH---TISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDTPFITA 62 (256)
T ss_pred CEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCCCEEEc
Confidence 489999999998 222 477899999999999999999999999998 68999999987555444
No 107
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.01 E-value=7.3e-10 Score=84.62 Aligned_cols=63 Identities=30% Similarity=0.438 Sum_probs=54.4
Q ss_pred EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR 97 (149)
Q Consensus 25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~ 97 (149)
|++|+||||++ +++ .+.|...++|++|+++|++++++|||+... +..+++.+++..++...+|
T Consensus 1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~~~I~~nG 63 (254)
T PF08282_consen 1 IFSDLDGTLLN------SDG---KISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDDYFICSNG 63 (254)
T ss_dssp EEEECCTTTCS------TTS---SSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCSEEEEGGG
T ss_pred cEEEECCceec------CCC---eeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchhhhccccc
Confidence 68999999998 332 477999999999999999999999999999 7999999998867666543
No 108
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.01 E-value=8.3e-10 Score=85.84 Aligned_cols=62 Identities=27% Similarity=0.396 Sum_probs=52.0
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
+++||+||||++. . ...+++.++|++|+++|++++++|||++.. +..+++++|+..++...+
T Consensus 1 li~~DlDGTLl~~------~----~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~~~I~~N 62 (225)
T TIGR02461 1 VIFTDLDGTLLPP------G----YEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEPPFIVEN 62 (225)
T ss_pred CEEEeCCCCCcCC------C----CCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCcEEEcC
Confidence 4899999999972 1 245689999999999999999999999998 689999999876665443
No 109
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.98 E-value=9.9e-10 Score=84.07 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=50.5
Q ss_pred EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
++||+||||++. ++ .+.+.+.++|++++++|++++++|||+... +..+++.+++..++..
T Consensus 1 i~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~~~i~ 60 (225)
T TIGR01482 1 IASDIDGTLTDP------NR---AINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPDPVIA 60 (225)
T ss_pred CeEeccCccCCC------Cc---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCeEEE
Confidence 589999999983 22 477888999999999999999999999998 6888999987655543
No 110
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.98 E-value=9.8e-10 Score=84.97 Aligned_cols=92 Identities=17% Similarity=0.087 Sum_probs=71.4
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----cc-c----------CCChhH---HHHH
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VR-L----------SCCIMC---IIFF 108 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~-~----------~p~p~~---~i~~ 108 (149)
.++.||+.+++++++++|++++|+|++.... ++.+.+.+|++..+... .+ + ...... .+.-
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 6899999999999999999999999999887 89999999998765433 11 1 111111 2222
Q ss_pred HhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 109 LFFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 109 ~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+.+.+++++..+-||.|.+--=..||-.+.+
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 3567788999999999999998888876654
No 111
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.96 E-value=7.8e-09 Score=82.52 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=68.7
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCcccccccC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS 99 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~~ 99 (149)
+++++||+||||+++ ..++||+.++|++|+++|++++++||++.... ....++.+|+. ....++..
T Consensus 2 ~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~--~~~~~i~t 69 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG----------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN--GLAEQLFS 69 (279)
T ss_pred ccEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEec
Confidence 678999999999973 14789999999999999999999999764321 23567778875 33455666
Q ss_pred CChhHHHHHHhh-CCCcceEEEeehHhHHH-HHHHhCCch
Q 032013 100 CCIMCIIFFLFF-FSISAFILFVDLFCFMY-AAAYVGCDL 137 (149)
Q Consensus 100 p~p~~~i~~~~~-~~~~~~l~~eDs~~gi~-aa~~ag~~~ 137 (149)
|.-...-|++.. .......++=+. |+. ....+|..+
T Consensus 70 s~~~~~~~l~~~~~~~~~v~~iG~~--~~~~~l~~~g~~~ 107 (279)
T TIGR01452 70 SALCAARLLRQPPDAPKAVYVIGEE--GLRAELDAAGIRL 107 (279)
T ss_pred HHHHHHHHHHhhCcCCCEEEEEcCH--HHHHHHHHCCCEE
Confidence 666556666653 233445444332 333 334457654
No 112
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.95 E-value=6.8e-09 Score=82.89 Aligned_cols=113 Identities=16% Similarity=0.042 Sum_probs=78.6
Q ss_pred CCCccEEEEecCCcccccccc---------------cc--ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--H
Q 032013 19 ENLPRLVVFDLDYTLWPFYCE---------------CC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--A 79 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~---------------~~--~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~ 79 (149)
...|.+|+||+|+|++++..+ |+ .......++||+.++|++|+++|++++++||++.... +
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 345789999999999986543 10 1123467899999999999999999999999985431 3
Q ss_pred HHHHHHcCCCCCccc-c---cccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHh
Q 032013 80 KTFLHKLGIHSMFVP-M---VRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYV 133 (149)
Q Consensus 80 ~~~l~~~gl~~~f~~-~---~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~a 133 (149)
...++.+|+..++.. + ...++++...-.+..+.++ .+.+=|..+++.++...
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I--vl~vGD~~~Df~~~~~~ 207 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI--VLLFGDNLLDFDDFFYK 207 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE--EEEECCCHHHhhhhhcc
Confidence 578888999764322 2 2235566445555444443 57777999999765543
No 113
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.95 E-value=3.3e-09 Score=83.94 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=57.7
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLS 99 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~ 99 (149)
+++++||+||||+++ ....-.+.|++.+++++|+++|++++++||++... .....++.+|++ +...++..
T Consensus 1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~t 72 (257)
T TIGR01458 1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFT 72 (257)
T ss_pred CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEc
Confidence 468999999999984 11001278999999999999999999999987653 146677788875 44445555
Q ss_pred CChhHHHHHH
Q 032013 100 CCIMCIIFFL 109 (149)
Q Consensus 100 p~p~~~i~~~ 109 (149)
|.....-|+.
T Consensus 73 s~~~~~~~l~ 82 (257)
T TIGR01458 73 PAPAARQLLE 82 (257)
T ss_pred HHHHHHHHHH
Confidence 5554445544
No 114
>PTZ00174 phosphomannomutase; Provisional
Probab=98.93 E-value=2.2e-09 Score=84.26 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=46.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
+++|++|+||||++ +++ .+.|.+.++|++++++|++++++|||+... +...++.
T Consensus 5 ~klia~DlDGTLL~------~~~---~is~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~l~~ 58 (247)
T PTZ00174 5 KTILLFDVDGTLTK------PRN---PITQEMKDTLAKLKSKGFKIGVVGGSDYPK-IKEQLGE 58 (247)
T ss_pred CeEEEEECcCCCcC------CCC---CCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHhh
Confidence 68999999999998 332 477889999999999999999999999888 5666653
No 115
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.93 E-value=5.4e-09 Score=74.82 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=53.5
Q ss_pred cEEEEecCCccccccccccccC--CCCccCccHHHHHHHHHHCCceEEEEeCCCchH--------------HHHHHHHHc
Q 032013 23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL 86 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~--~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--------------i~~~~l~~~ 86 (149)
|++++|+||||++.. .+ ....+.+++.+.|++++++|+.++++|+|+... .+...|++.
T Consensus 2 K~i~~DiDGTL~~~~-----~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~ 76 (126)
T TIGR01689 2 KRLVMDLDNTITLTE-----NGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH 76 (126)
T ss_pred CEEEEeCCCCcccCC-----CCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence 689999999999731 11 113477899999999999999999999998653 246777787
Q ss_pred CCCCCcccccccCCC
Q 032013 87 GIHSMFVPMVRLSCC 101 (149)
Q Consensus 87 gl~~~f~~~~~~~p~ 101 (149)
+++ ++.+...||-
T Consensus 77 ~ip--Yd~l~~~kp~ 89 (126)
T TIGR01689 77 NVP--YDEIYVGKPW 89 (126)
T ss_pred CCC--CceEEeCCCc
Confidence 775 4555555553
No 116
>PRK10444 UMP phosphatase; Provisional
Probab=98.92 E-value=8e-09 Score=81.56 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=56.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCcccccccC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS 99 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~~ 99 (149)
|++++||+||||+++ . .+.|++.+++++|+++|++++++||++.... ....++.+|+. +...++..
T Consensus 1 ~~~v~~DlDGtL~~~------~----~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~t 68 (248)
T PRK10444 1 IKNVICDIDGVLMHD------N----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYT 68 (248)
T ss_pred CcEEEEeCCCceEeC------C----eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEec
Confidence 578999999999983 1 4789999999999999999999999987541 24445556763 34444555
Q ss_pred CChhHHHHHHh
Q 032013 100 CCIMCIIFFLF 110 (149)
Q Consensus 100 p~p~~~i~~~~ 110 (149)
|.-...-|++.
T Consensus 69 s~~~~~~~L~~ 79 (248)
T PRK10444 69 SAMATADFLRR 79 (248)
T ss_pred HHHHHHHHHHh
Confidence 55544555553
No 117
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.92 E-value=1.2e-08 Score=76.40 Aligned_cols=114 Identities=22% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCce--EEEEeCCC-------chHHHHHHHHHcCCC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH--VAVASRSP-------APDIAKTFLHKLGIH 89 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~--i~IaT~~~-------~~~i~~~~l~~~gl~ 89 (149)
...+++++||+|+||+.. . ...+.|...+.++++++.+.. ++|+||+. ..+ ++.+-+.+|+.
T Consensus 38 ~~Gik~li~DkDNTL~~~------~--~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp 108 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPP------Y--EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP 108 (168)
T ss_pred hcCceEEEEcCCCCCCCC------C--cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence 355899999999999973 1 136889999999999998764 99999984 455 67777888865
Q ss_pred CCcccccccCCChhHHHHHHhh-----CCCcceEEEee-hHhHHHHHHHhCCchhhhhhh
Q 032013 90 SMFVPMVRLSCCIMCIIFFLFF-----FSISAFILFVD-LFCFMYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 90 ~~f~~~~~~~p~p~~~i~~~~~-----~~~~~~l~~eD-s~~gi~aa~~ag~~~~~~~~~ 143 (149)
-+ .....||.....+.-..+ .+|++..++=| ...+|..|++.|+-+|.+++=
T Consensus 109 vl--~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 109 VL--RHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred EE--EeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 21 112346644334433322 35778877777 467999999999999987753
No 118
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.89 E-value=7.9e-09 Score=77.77 Aligned_cols=84 Identities=26% Similarity=0.256 Sum_probs=69.0
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--CcccccccCCChhHHHHHH----hhCCCcceEEE
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPMVRLSCCIMCIIFFL----FFFSISAFILF 120 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f~~~~~~~p~p~~~i~~~----~~~~~~~~l~~ 120 (149)
.+++|++.++|++|++.|++++++||..... +....+.+|+.+ .|.... .+|+| .+|.. .++++++++.+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~~~v~a~~~-~kP~~--k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFDSIVFARVI-GKPEP--KIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCSEEEEESHE-TTTHH--HHHHHHHHHHTCTGGGEEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccccccccccc-ccccc--hhHHHHHHHHhcCCCEEEEE
Confidence 3688999999999999999999999999888 899999999965 232212 36666 54443 55677899999
Q ss_pred eehHhHHHHHHHhC
Q 032013 121 VDLFCFMYAAAYVG 134 (149)
Q Consensus 121 eDs~~gi~aa~~ag 134 (149)
.|..|++.|+++||
T Consensus 202 GDg~nD~~al~~Ag 215 (215)
T PF00702_consen 202 GDGVNDAPALKAAG 215 (215)
T ss_dssp ESSGGHHHHHHHSS
T ss_pred ccCHHHHHHHHhCc
Confidence 99999999999997
No 119
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.88 E-value=4.7e-09 Score=82.48 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=52.0
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
++++|+||||++. +. ...+.+.+++++|+++|++++++|||+... +..+++.+++..++.+.+
T Consensus 1 li~~DlDGTll~~------~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~~~I~~N 63 (256)
T TIGR01486 1 WIFTDLDGTLLDP------HG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLEDPFIVEN 63 (256)
T ss_pred CEEEcCCCCCcCC------CC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCcEEEcC
Confidence 4899999999983 22 134568999999999999999999999999 799999999876665543
No 120
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1.4e-08 Score=81.25 Aligned_cols=86 Identities=17% Similarity=0.066 Sum_probs=56.9
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHc-CCCCCccccc
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKL-GIHSMFVPMV 96 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~-gl~~~f~~~~ 96 (149)
...++++||+||||+++ ..++||+.++|++|+++|+++.++||++...- ....|+.+ +++... ..
T Consensus 6 ~~y~~~l~DlDGvl~~G----------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~--~~ 73 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG----------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTP--DD 73 (269)
T ss_pred hhcCEEEEcCcCceEeC----------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCH--HH
Confidence 34788999999999974 25899999999999999999999999986541 23455553 332222 23
Q ss_pred ccCCChhHHHHHHhhCCCcce
Q 032013 97 RLSCCIMCIIFFLFFFSISAF 117 (149)
Q Consensus 97 ~~~p~p~~~i~~~~~~~~~~~ 117 (149)
+..+.-....|++...+...+
T Consensus 74 i~TS~~at~~~l~~~~~~~kv 94 (269)
T COG0647 74 IVTSGDATADYLAKQKPGKKV 94 (269)
T ss_pred eecHHHHHHHHHHhhCCCCEE
Confidence 333333344455444333333
No 121
>PLN02887 hydrolase family protein
Probab=98.82 E-value=9.1e-09 Score=89.99 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..++|+|++|+||||++ .++ .+.+.+.++|++++++|++++++|||+... +...++.+++.
T Consensus 305 ~~~iKLIa~DLDGTLLn------~d~---~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~ 365 (580)
T PLN02887 305 KPKFSYIFCDMDGTLLN------SKS---QISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA 365 (580)
T ss_pred ccCccEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence 34589999999999998 332 478899999999999999999999999998 68889988864
No 122
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.81 E-value=2.2e-08 Score=87.09 Aligned_cols=104 Identities=19% Similarity=0.085 Sum_probs=84.4
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p 100 (149)
.+.+.+..||+++.. -.-..+++||+.+.|++|+++| ++++++||.+... ++.+++++|+.++|... .|
T Consensus 364 ~~~~~v~~~~~~~g~------i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f~~~---~p 433 (556)
T TIGR01525 364 KTVVFVAVDGELLGV------IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVHAEL---LP 433 (556)
T ss_pred cEEEEEEECCEEEEE------EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeeeccC---CH
Confidence 466888999988863 1122469999999999999999 9999999999998 89999999998888653 34
Q ss_pred ChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 101 CIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 101 ~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
.+...+.-..+..+++|+.+.|+.|++.|+++||+
T Consensus 434 ~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 434 EDKLAIVKELQEEGGVVAMVGDGINDAPALAAADV 468 (556)
T ss_pred HHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCE
Confidence 44345555555566799999999999999999984
No 123
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.79 E-value=6.9e-08 Score=71.36 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=70.4
Q ss_pred EEEEecCCcccccccccc---ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHH---HHHHHH-----cCCCC-C
Q 032013 24 LVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIA---KTFLHK-----LGIHS-M 91 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~---~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~---~~~l~~-----~gl~~-~ 91 (149)
.|++|+||||++.....+ --++ -...|++.+++++++++|++++++|||+... + +..++. .++.. +
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~-~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~~~~~~~~lp~g~ 78 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGK-DWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQIKQDGHNLPHGP 78 (157)
T ss_pred CEEEecCCCCccccccccccccccc-CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHHhhhccccCCCce
Confidence 389999999998521100 0001 1468999999999999999999999999876 4 367766 33431 2
Q ss_pred cccccc----------cCCChh--HHHHHH---hhCC---CcceEEEeehHhHHHHHHHhCCch
Q 032013 92 FVPMVR----------LSCCIM--CIIFFL---FFFS---ISAFILFVDLFCFMYAAAYVGCDL 137 (149)
Q Consensus 92 f~~~~~----------~~p~p~--~~i~~~---~~~~---~~~~l~~eDs~~gi~aa~~ag~~~ 137 (149)
+....+ ...+|. ..-.+. ..++ ..-++.|-|..+.+.|=.++|++.
T Consensus 79 li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~ 142 (157)
T smart00775 79 VLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP 142 (157)
T ss_pred EEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCCh
Confidence 221111 123331 111222 1122 234467888899999999999874
No 124
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.77 E-value=1.9e-08 Score=88.86 Aligned_cols=68 Identities=26% Similarity=0.361 Sum_probs=56.2
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
....|+|++|+||||++. +. ...+.+.++|++|+++|++++++||++... +..+++.+++..++.+.+
T Consensus 413 ~~~~KLIfsDLDGTLLd~------d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~~~I~eN 480 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNP------LT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKDPFITEN 480 (694)
T ss_pred CceeeEEEEECcCCCcCC------CC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCCeEEEcC
Confidence 344689999999999983 22 345678899999999999999999999998 699999999876666554
No 125
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.74 E-value=1.1e-08 Score=81.76 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=63.4
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cccCCChhHHHHHH--hhCCCcceE
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VRLSCCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~~~p~p~~~i~~~--~~~~~~~~l 118 (149)
++++.++++.|+++|. ++|+||++........+...+...+|... ...||+|....++. .++++++|+
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 4899999999999887 78999987643111122233443443322 23588885544444 457789999
Q ss_pred EEeeh-HhHHHHHHHhCCchhhh
Q 032013 119 LFVDL-FCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 119 ~~eDs-~~gi~aa~~ag~~~~~~ 140 (149)
.+.|+ ..+|++|++|||+++..
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEE
Confidence 99999 59999999999998765
No 126
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.73 E-value=3.3e-08 Score=74.81 Aligned_cols=55 Identities=33% Similarity=0.457 Sum_probs=46.5
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
++++|+||||++. +. .++.+.+.+.|++|+++|++++++|||+... +..+++.++
T Consensus 1 li~~D~DgTL~~~------~~--~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDP------NA--HELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCC------CC--CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence 4899999999972 21 2477899999999999999999999999998 688888744
No 127
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.67 E-value=3.1e-08 Score=77.60 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=50.3
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
+|+.|+||||+++. + ......|.+.+++++++++|++++++|||+... +..+++.+++...
T Consensus 3 li~tDlDGTLl~~~-----~-~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~p 63 (249)
T TIGR01485 3 LLVSDLDNTLVDHT-----D-GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLTP 63 (249)
T ss_pred EEEEcCCCcCcCCC-----C-CChHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCCC
Confidence 58889999999742 1 113577999999999999999999999999999 6888888887543
No 128
>PRK11590 hypothetical protein; Provisional
Probab=98.66 E-value=1.3e-07 Score=72.49 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=62.1
Q ss_pred ccCccHHHHH-HHHHHCCceEEEEeCCCchHHHHHHHHHcCC---CCCcccc-c-cc-------CCChhHHHH-H--Hhh
Q 032013 48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPM-V-RL-------SCCIMCIIF-F--LFF 111 (149)
Q Consensus 48 ~~~pg~~e~L-~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl---~~~f~~~-~-~~-------~p~p~~~i~-~--~~~ 111 (149)
.++||+.+.| ++++++|++++|+||++... ++.+++.+++ .+.+-.. + .+ ...-...+. + ..+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~ 173 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIG 173 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhC
Confidence 5689999999 67899999999999999988 7999999885 3322111 0 11 011111111 1 123
Q ss_pred CCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 112 FSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 112 ~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+...|-++-||.+.+-=-..||=+..|
T Consensus 174 ~~~~~~~aY~Ds~~D~pmL~~a~~~~~v 201 (211)
T PRK11590 174 TPLRLYSGYSDSKQDNPLLYFCQHRWRV 201 (211)
T ss_pred CCcceEEEecCCcccHHHHHhCCCCEEE
Confidence 3557888999999999888888766555
No 129
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.65 E-value=2e-08 Score=79.44 Aligned_cols=92 Identities=9% Similarity=-0.111 Sum_probs=69.3
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc---------ccCCChhHHHHHH--hhCCCcce
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV---------RLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~---------~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
.++++.+.++.|++.+++++++||+++.. ........|+..+|+.+. ..||+|.....+. .++++++|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 35788899999999999999999988765 344445556666665331 2488884443333 45778999
Q ss_pred EEEeehH-hHHHHHHHhCCchhhhh
Q 032013 118 ILFVDLF-CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 118 l~~eDs~-~gi~aa~~ag~~~~~~~ 141 (149)
+.+.|+. .+|.+|+++|++++.+.
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEEC
Confidence 9999996 99999999999998763
No 130
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.62 E-value=2.5e-08 Score=78.00 Aligned_cols=89 Identities=9% Similarity=-0.010 Sum_probs=65.9
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------cccCCChhHHHHHHhhCC---CcceE
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------VRLSCCIMCIIFFLFFFS---ISAFI 118 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------~~~~p~p~~~i~~~~~~~---~~~~l 118 (149)
++++.++++.++++|+++ |+||++... ....+...+...+|... ...||+|.....+...++ +++|+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999999999997 889998766 45555556655444432 255888854444444443 46899
Q ss_pred EEeeh-HhHHHHHHHhCCchhhh
Q 032013 119 LFVDL-FCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 119 ~~eDs-~~gi~aa~~ag~~~~~~ 140 (149)
++.|+ ..+|.+|+++||+++.+
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEE
Confidence 99999 69999999999998753
No 131
>PLN02423 phosphomannomutase
Probab=98.61 E-value=8.9e-08 Score=75.35 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=42.7
Q ss_pred CCCccEEE-EecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 19 ENLPRLVV-FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 19 ~~~~k~vi-fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
.++++.++ ||+||||++ +++ .+.|.+.+++++|+++ ++++++|||+... ....+..
T Consensus 3 ~~~~~~i~~~D~DGTLl~------~~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~-~~~~~~~ 59 (245)
T PLN02423 3 ARKPGVIALFDVDGTLTA------PRK---EATPEMLEFMKELRKV-VTVGVVGGSDLSK-ISEQLGK 59 (245)
T ss_pred CCccceEEEEeccCCCcC------CCC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHH-HHHHhcc
Confidence 34566555 999999998 332 4678889999999987 9999999997766 3444443
No 132
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.61 E-value=5e-07 Score=66.91 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=70.7
Q ss_pred cEEEEecCCcccccccc--ccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCC---c-----------hHHHHHHHHH
Q 032013 23 RLVVFDLDYTLWPFYCE--CCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSP---A-----------PDIAKTFLHK 85 (149)
Q Consensus 23 k~vifDlDGTLld~~~~--~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~---~-----------~~i~~~~l~~ 85 (149)
|..+||+||||...... +..+.....+. |++.+.|++|++.||.++|+||.. + .. +..+++.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~k-i~~il~~ 79 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEK-IENILKE 79 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHH-HHHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHH-HHHHHHH
Confidence 46899999999984211 11122223444 589999999999999999999762 2 23 4566777
Q ss_pred cCCCCCcccc----cccCCChhHHHHHHhh------CCCcceEEEeeh-----------HhHHHHHHHhCCch
Q 032013 86 LGIHSMFVPM----VRLSCCIMCIIFFLFF------FSISAFILFVDL-----------FCFMYAAAYVGCDL 137 (149)
Q Consensus 86 ~gl~~~f~~~----~~~~p~p~~~i~~~~~------~~~~~~l~~eDs-----------~~gi~aa~~ag~~~ 137 (149)
+++.-.+-.. ..-||.|.-.-++... ++.++|+.+=|+ -....=|.+.|++-
T Consensus 80 l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 80 LGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred cCCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 7776322111 3558888665555532 244889999996 57788888888864
No 133
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.60 E-value=1.9e-07 Score=73.13 Aligned_cols=90 Identities=18% Similarity=0.088 Sum_probs=66.1
Q ss_pred CcHHHhHHHHHhhhh---ccCCCccEEEEecCCcccccccccc-----------------ccCCCCccCccHHHHHHHHH
Q 032013 2 GDLEKVKNEALEIIG---QFENLPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALK 61 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~---~~~~~~k~vifDlDGTLld~~~~~~-----------------~~~~~~~~~pg~~e~L~~Lk 61 (149)
+|++.+.++|..... .......+++||+|.|++++.++.. -.....+..|++.++++.|+
T Consensus 54 ~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~ 133 (229)
T TIGR01675 54 RDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKII 133 (229)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 477777777755442 2334578999999999999654310 01234689999999999999
Q ss_pred HCCceEEEEeCCCchH--HHHHHHHHcCCCCC
Q 032013 62 EKGIHVAVASRSPAPD--IAKTFLHKLGIHSM 91 (149)
Q Consensus 62 ~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~ 91 (149)
++|++++++|||+... .+...|...|+..+
T Consensus 134 ~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 134 ELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred HCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 9999999999998533 14677888888764
No 134
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.59 E-value=2.2e-07 Score=81.09 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=82.3
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
.+.+.++.||++...-. -..+++|++.+++++|+++|++++++||.+... ++.+++++|++ +|. ...|+
T Consensus 385 ~~~~~~~~~~~~~g~~~------~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~-~~~---~~~p~ 453 (562)
T TIGR01511 385 STSVLVAVNGELAGVFA------LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN-VRA---EVLPD 453 (562)
T ss_pred CEEEEEEECCEEEEEEE------ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc-EEc---cCChH
Confidence 35688899999875210 113689999999999999999999999999988 89999999996 443 23455
Q ss_pred hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013 102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
+...+.-..+-+.++|+.+.|+.|++.|+++||+.
T Consensus 454 ~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vg 488 (562)
T TIGR01511 454 DKAALIKELQEKGRVVAMVGDGINDAPALAQADVG 488 (562)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEE
Confidence 55555555555678999999999999999999864
No 135
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.58 E-value=2.5e-07 Score=80.28 Aligned_cols=102 Identities=18% Similarity=0.027 Sum_probs=81.1
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p 102 (149)
.+.+-.||++... -....+++||+.+.|++|+++|+ +++++||.+... ++..++++|++++|... .|.+
T Consensus 344 ~~~v~~~~~~~g~------i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f~~~---~p~~ 413 (536)
T TIGR01512 344 IVHVARDGTYLGY------ILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVHAEL---LPED 413 (536)
T ss_pred EEEEEECCEEEEE------EEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhhhcc---CcHH
Confidence 3556677777652 11223689999999999999999 999999999988 89999999998887533 3555
Q ss_pred hHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 103 MCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 103 ~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
...+....+...++++.+.|+.|++.|+++||+
T Consensus 414 K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 414 KLEIVKELREKYGPVAMVGDGINDAPALAAADV 446 (536)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCE
Confidence 445555566666899999999999999999995
No 136
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.57 E-value=1.2e-07 Score=75.54 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=48.7
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHH-CCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~-~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.++++|+||||++.. ++.....+.|.+.+.|+.|++ .|++++|+|||+... +..+++.+++
T Consensus 15 ~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~~ 76 (266)
T PRK10187 15 YAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYRF 76 (266)
T ss_pred EEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCcccc
Confidence 589999999999831 222234678999999999998 799999999999998 6777766553
No 137
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.55 E-value=3.2e-07 Score=67.83 Aligned_cols=102 Identities=15% Similarity=0.014 Sum_probs=68.7
Q ss_pred ccEEEEecCCcccccccccc-c-------------------------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013 22 PRLVVFDLDYTLWPFYCECC-Y-------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~-~-------------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
...+++|+|.||+.+..... + ....+.++||+.++|++|++. ++++|+|++++
T Consensus 6 kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~ 84 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTR 84 (156)
T ss_pred ceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcH
Confidence 35699999999998632210 0 011245789999999999965 99999999999
Q ss_pred hHHHHHHHHHcCCCC-Cccc-ccccCCChhHHHHHH-----hhCCCcceEEEeehHhHH
Q 032013 76 PDIAKTFLHKLGIHS-MFVP-MVRLSCCIMCIIFFL-----FFFSISAFILFVDLFCFM 127 (149)
Q Consensus 76 ~~i~~~~l~~~gl~~-~f~~-~~~~~p~p~~~i~~~-----~~~~~~~~l~~eDs~~gi 127 (149)
.. +..+++.++... +|.. +......- ..+.+ .+.+.+..++++|++.--
T Consensus 85 ~y-A~~vl~~ldp~~~~F~~ri~~rd~~~--~~~~KdL~~i~~~d~~~vvivDd~~~~~ 140 (156)
T TIGR02250 85 AY-AQAIAKLIDPDGKYFGDRIISRDESG--SPHTKSLLRLFPADESMVVIIDDREDVW 140 (156)
T ss_pred HH-HHHHHHHhCcCCCeeccEEEEeccCC--CCccccHHHHcCCCcccEEEEeCCHHHh
Confidence 99 899999999884 7732 21111100 11222 233457788999998543
No 138
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.51 E-value=7.4e-07 Score=72.72 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=64.4
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC----CceEEEEeCCC---chHHHHHHHHHcCCCCCccccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMV 96 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~----Gi~i~IaT~~~---~~~i~~~~l~~~gl~~~f~~~~ 96 (149)
+++||+||||+++ ..+.|++.++++.|+++ |+++.++||+. ....++.+.+.+|+. ++..+
T Consensus 2 ~~ifD~DGvL~~g----------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~--~~~~~ 69 (321)
T TIGR01456 2 GFAFDIDGVLFRG----------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD--VSPLQ 69 (321)
T ss_pred EEEEeCcCceECC----------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC--CCHHH
Confidence 5899999999984 14689999999999999 99999999886 344233344778875 44444
Q ss_pred ccCCChhHHHHHHhhCCCcceEEE-eehHhHHHHHHHhCCchhh
Q 032013 97 RLSCCIMCIIFFLFFFSISAFILF-VDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 97 ~~~p~p~~~i~~~~~~~~~~~l~~-eDs~~gi~aa~~ag~~~~~ 139 (149)
+..+......|+ ....- ..+++ +++. ...+.++|.+.++
T Consensus 70 i~~s~~~~~~ll-~~~~~-~v~viG~~~~--~~~l~~~G~~~vv 109 (321)
T TIGR01456 70 VIQSHSPYKSLV-NKYEK-RILAVGTGSV--RGVAEGYGFQNVV 109 (321)
T ss_pred HHhhhHHHHHHH-HHcCC-ceEEEeChHH--HHHHHHcCCcccc
Confidence 444443233333 32222 23333 3432 5555577877655
No 139
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.50 E-value=6.1e-07 Score=70.08 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=51.6
Q ss_pred EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---chHHHHHHHHH-cCCCCCcccccccCC
Q 032013 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVRLSC 100 (149)
Q Consensus 25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---~~~i~~~~l~~-~gl~~~f~~~~~~~p 100 (149)
++||+||||+++ . .++|++.++++.++++|+++.++||++ +.. ....+.. .|+. ++..+...|
T Consensus 1 ~lfD~DGvL~~~------~----~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~-~~~~l~~~~g~~--~~~~~iits 67 (236)
T TIGR01460 1 FLFDIDGVLWLG------H----KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEED-YAEKLSSLLGVD--VSPDQIITS 67 (236)
T ss_pred CEEeCcCccCcC------C----ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHHhcCCC--CCHHHeeeH
Confidence 589999999984 1 468899999999999999999999665 334 3455555 6764 344445555
Q ss_pred ChhHHHHHHh
Q 032013 101 CIMCIIFFLF 110 (149)
Q Consensus 101 ~p~~~i~~~~ 110 (149)
.-....|++.
T Consensus 68 ~~~~~~~l~~ 77 (236)
T TIGR01460 68 GSVTKDLLRQ 77 (236)
T ss_pred HHHHHHHHHH
Confidence 4444555553
No 140
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.43 E-value=1.3e-06 Score=67.32 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=60.1
Q ss_pred ccCccHHHHHH-HHHHCCceEEEEeCCCchHHHHHHHHHcCC---CCCcccc----cccC-CCh----hHHHH-H--Hhh
Q 032013 48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPM----VRLS-CCI----MCIIF-F--LFF 111 (149)
Q Consensus 48 ~~~pg~~e~L~-~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl---~~~f~~~----~~~~-p~p----~~~i~-~--~~~ 111 (149)
.++|++.+.|+ +++++|++++|+||++... ++.+.+..++ .+.+-.. .+.. ..| ...+. + ..+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~ 172 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIG 172 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhC
Confidence 57999999995 8899999999999999887 7888877544 2222111 1110 111 01111 1 123
Q ss_pred CCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 112 FSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 112 ~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+.+.|-++-||.+.+-=-..||=+..|
T Consensus 173 ~~~~~~~aYsDS~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 173 SPLKLYSGYSDSKQDNPLLAFCEHRWRV 200 (210)
T ss_pred CChhheEEecCCcccHHHHHhCCCcEEE
Confidence 3446788999999999888777766554
No 141
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.43 E-value=1.1e-06 Score=70.30 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=63.8
Q ss_pred CcHHHhHHHHHhhhhc-cCCCccEEEEecCCccccccccc---------------c---ccCCCCccCccHHHHHHHHHH
Q 032013 2 GDLEKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCEC---------------C---YEDEIPYLYPHAKGILEALKE 62 (149)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~k~vifDlDGTLld~~~~~---------------~---~~~~~~~~~pg~~e~L~~Lk~ 62 (149)
+|++.+-.+|...... ......+++||+|+|++++.++. + -.....+..|++.++.+++++
T Consensus 80 ~D~~~v~~~a~~y~~~~~~~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~ 159 (275)
T TIGR01680 80 SDSKTVNQQAYFFARDLEVHEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVS 159 (275)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHH
Confidence 5777777777554321 22235899999999999753331 1 011246789999999999999
Q ss_pred CCceEEEEeCCCchH--HHHHHHHHcCCCCC
Q 032013 63 KGIHVAVASRSPAPD--IAKTFLHKLGIHSM 91 (149)
Q Consensus 63 ~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~ 91 (149)
+|++++++|||+... .+...|+..|+..+
T Consensus 160 ~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~ 190 (275)
T TIGR01680 160 LGFKIIFLSGRLKDKQAVTEANLKKAGYHTW 190 (275)
T ss_pred CCCEEEEEeCCchhHHHHHHHHHHHcCCCCc
Confidence 999999999998532 15677778887653
No 142
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.43 E-value=2e-07 Score=72.28 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=46.3
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC--ccccc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM--FVPMV 96 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~--f~~~~ 96 (149)
++++|+||||++. +. .+ +...++++ ++++|++++++|||+... +..+++.+++..+ +...+
T Consensus 1 li~~DlDgTLl~~------~~---~~-~~~~~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~~~~~~I~~n 63 (236)
T TIGR02471 1 LIITDLDNTLLGD------DE---GL-ASFVELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLPSPDVLIARV 63 (236)
T ss_pred CeEEeccccccCC------HH---HH-HHHHHHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCCCCCEEEECC
Confidence 4789999999972 21 23 33447777 699999999999999999 7999999987533 44444
No 143
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.42 E-value=6.3e-07 Score=69.69 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=49.5
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
.+|.+||.|+||||+++. . -...+.+++.+|++.|++++.+||+++.+ ...+-+.+|+..
T Consensus 5 ~~~~lIFtDlD~TLl~~~------y----e~~pA~pv~~el~d~G~~Vi~~SSKT~aE-~~~l~~~l~v~~ 64 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHS------Y----EWQPAAPVLLELKDAGVPVILCSSKTRAE-MLYLQKSLGVQG 64 (274)
T ss_pred ccceEEEEcccCcccCCC------C----CCCccchHHHHHHHcCCeEEEeccchHHH-HHHHHHhcCCCC
Confidence 458899999999999831 1 11356789999999999999999999999 588888899873
No 144
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.6e-06 Score=67.31 Aligned_cols=81 Identities=19% Similarity=0.134 Sum_probs=63.4
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~ 98 (149)
..++++||.||+||.+ ..+.||+.++++.|++.|.++.++||++.... ..+.++.+|+.. +...+++
T Consensus 21 ~~DtfifDcDGVlW~g----------~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ 89 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLG----------EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIF 89 (306)
T ss_pred hcCEEEEcCCcceeec----------CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCccccc
Confidence 3788999999999973 25889999999999999999999999886552 234455677765 6667788
Q ss_pred CCChhHHHHHHhhC
Q 032013 99 SCCIMCIIFFLFFF 112 (149)
Q Consensus 99 ~p~p~~~i~~~~~~ 112 (149)
+|.-..--|++...
T Consensus 90 ssa~~~a~ylk~~~ 103 (306)
T KOG2882|consen 90 SSAYAIADYLKKRK 103 (306)
T ss_pred ChHHHHHHHHHHhC
Confidence 88887777776443
No 145
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.29 E-value=3.1e-07 Score=69.42 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCch-------HHHHHHHHHc-CCCCCcccccccCCChhHHHHHHhhCCCcc
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAP-------DIAKTFLHKL-GIHSMFVPMVRLSCCIMCIIFFLFFFSISA 116 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~-------~i~~~~l~~~-gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~ 116 (149)
...++.||+.|+|++|.+.|+.+.++|+++.. . ....+++. +.. .++.. +...+- ..++ .
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~-k~~Wl~~hf~~i-~~~~~-~~~~~K-------~~v~--~ 137 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEE-KREWLERHFPFI-PYDNL-IFTGDK-------TLVG--G 137 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHH-HHHHHHHHHTHH-HHCCE-EEESSG-------GGC----
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHH-HHHHHHHHcCCC-chheE-EEecCC-------CeEe--c
Confidence 35789999999999999999888888877654 2 34555554 210 01111 111111 1122 1
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
=+.+||++.-+.++..+|++++++.+
T Consensus 138 DvlIDD~~~n~~~~~~~g~~~iLfd~ 163 (191)
T PF06941_consen 138 DVLIDDRPHNLEQFANAGIPVILFDQ 163 (191)
T ss_dssp SEEEESSSHHHSS-SSESSEEEEE--
T ss_pred cEEecCChHHHHhccCCCceEEEEcC
Confidence 28999999999999999999998753
No 146
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=98.29 E-value=2.8e-06 Score=68.16 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=59.2
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
...|..|+||+|.||+. ++++.-...|.+.+.|.+|+++|..+++-|.+.++. +...++.+++.++|+.+
T Consensus 119 ~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~Fd~i 188 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYFDII 188 (297)
T ss_pred CCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCccccEEE
Confidence 34578999999999997 333222355788899999999999999999999999 79999999999999876
No 147
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.27 E-value=6.4e-07 Score=70.04 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCccEEEEecCCcccccccc------------------ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HH
Q 032013 20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA 79 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~------------------~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~ 79 (149)
..+.+|+||+|+|++++..+ |...+. .+..||+.+++++++++|+.|+++|||+... .+
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~-~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGK-APAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTG-GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhccc-CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 45889999999999985333 112222 4789999999999999999999999997542 15
Q ss_pred HHHHHHcCCCC
Q 032013 80 KTFLHKLGIHS 90 (149)
Q Consensus 80 ~~~l~~~gl~~ 90 (149)
...|+..|+..
T Consensus 149 ~~nL~~~G~~~ 159 (229)
T PF03767_consen 149 EKNLKKAGFPG 159 (229)
T ss_dssp HHHHHHHTTST
T ss_pred HHHHHHcCCCc
Confidence 67788889654
No 148
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.25 E-value=2.1e-06 Score=62.73 Aligned_cols=98 Identities=17% Similarity=0.103 Sum_probs=61.5
Q ss_pred cEEEEecCCcccccccccc----------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC-CCC
Q 032013 23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM 91 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~----------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl-~~~ 91 (149)
+++++|+||||+.....-. ..+..+...||+.++|+++.+. +.++|.|++.... +..+++.+.- ..+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~ 78 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL 78 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence 5799999999998522100 0012356899999999999665 9999999999888 8999999886 445
Q ss_pred ccccc----c-cCCChhHHHHHH----hhCCCcceEEEeehHhH
Q 032013 92 FVPMV----R-LSCCIMCIIFFL----FFFSISAFILFVDLFCF 126 (149)
Q Consensus 92 f~~~~----~-~~p~p~~~i~~~----~~~~~~~~l~~eDs~~g 126 (149)
|...- . ..... . .+ .+-+++..++++|++.-
T Consensus 79 ~~~~~~r~~~~~~~~~--~--~KdL~~l~~~~~~vvivDD~~~~ 118 (159)
T PF03031_consen 79 FSRRLYRDDCTFDKGS--Y--IKDLSKLGRDLDNVVIVDDSPRK 118 (159)
T ss_dssp EEEEEEGGGSEEETTE--E--E--GGGSSS-GGGEEEEES-GGG
T ss_pred cccccccccccccccc--c--ccchHHHhhccccEEEEeCCHHH
Confidence 65431 1 00111 0 12 22346899999998864
No 149
>PLN03017 trehalose-phosphatase
Probab=98.25 E-value=3e-06 Score=70.51 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=44.0
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l 83 (149)
-.++++|+||||++.- .+.....+.+++.+.|++|. ++++++|+|||+... +..++
T Consensus 111 ~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~-l~~~~ 166 (366)
T PLN03017 111 QIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDK-VYNFV 166 (366)
T ss_pred CeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHH-HHHhh
Confidence 4678889999999531 11233468899999999999 789999999999988 56664
No 150
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.21 E-value=7.9e-06 Score=74.35 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
.+.+++-.||+++..- .-..+++|++.+.|++|+++|++++++||..... ++.+.+++|+.++|... .|.
T Consensus 630 ~~~v~va~~~~~~g~~------~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~~~~---~p~ 699 (834)
T PRK10671 630 ATPVLLAVDGKAAALL------AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVIAGV---LPD 699 (834)
T ss_pred CeEEEEEECCEEEEEE------EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEEeCC---CHH
Confidence 4567777888876411 0112688999999999999999999999999888 79999999998766542 344
Q ss_pred hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013 102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
+...+--..+..+++++.+-|+.|++.|+++||+-
T Consensus 700 ~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvg 734 (834)
T PRK10671 700 GKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVG 734 (834)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCee
Confidence 43343334555667899999999999999999873
No 151
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.21 E-value=5.4e-06 Score=62.86 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=74.3
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---C----CCCCcccccccCCChhHHHHHH--hhCCCcce
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---G----IHSMFVPMVRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---g----l~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
.+++|++.+.|++.++.|+++.|-|+++... ..-++.+. . +..|||...+.|..-..+.-++ +|++|.+-
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~A-QkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKA-QKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchh-HHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 5799999999999999999999999998775 34444432 2 3456666556666654444443 77888999
Q ss_pred EEEeehHhHHHHHHHhCCchhhhhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
|++.|.+.-+.||+.+||+|+..-|
T Consensus 181 lFLSDn~~EL~AA~~vGl~t~l~~R 205 (229)
T COG4229 181 LFLSDNPEELKAAAGVGLATGLAVR 205 (229)
T ss_pred EEecCCHHHHHHHHhcchheeeeec
Confidence 9999999999999999999987655
No 152
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=98.18 E-value=1.5e-05 Score=61.08 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=69.4
Q ss_pred CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC--------
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM-------- 91 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~-------- 91 (149)
...+++++|+|+||+++... .........|++.++|+.+.+ .+.++|-|++.... ++.+++.+++...
T Consensus 19 ~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y-a~~~l~~l~~~~~~~~~i~~~ 94 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW-IEIKMTELGVLTNPNYKITFL 94 (195)
T ss_pred CCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH-HHHHHHHhcccCCccceEEEE
Confidence 34589999999999985211 122335788999999999999 59999999999888 7999998865321
Q ss_pred cccc---------cc-cCCChhHHHHHHh--hCCCcceEEEeehHhH
Q 032013 92 FVPM---------VR-LSCCIMCIIFFLF--FFSISAFILFVDLFCF 126 (149)
Q Consensus 92 f~~~---------~~-~~p~p~~~i~~~~--~~~~~~~l~~eDs~~g 126 (149)
.+.. .+ +.-++...+.... +.+.++.|.+.||+.-
T Consensus 95 ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~ 141 (195)
T TIGR02245 95 LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRN 141 (195)
T ss_pred eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHH
Confidence 0000 11 0123333443332 2366899999999854
No 153
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=98.17 E-value=4.2e-06 Score=59.76 Aligned_cols=70 Identities=39% Similarity=0.594 Sum_probs=56.5
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
|+++.+|+|+|+++..+...+.++....++.+...|..|+++|+.++++|++....++...|+.+.+..-
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~ 87 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQT 87 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcc
Confidence 5666666666666655554566777889999999999999999999999999988778899998877543
No 154
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.15 E-value=4.7e-06 Score=68.86 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=72.5
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-C-------CCCCcccccccCCCh---------------
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVRLSCCI--------------- 102 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-g-------l~~~f~~~~~~~p~p--------------- 102 (149)
.+...||+.++|++|+++|++++|+||++... ++..++.+ | +.++|+.+....-+|
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 35678999999999999999999999999999 79999996 7 889998773322111
Q ss_pred ------h-------HHHHH---------HhhCCCcceEEEee-hHhHHHHHH-HhCCchhhhh
Q 032013 103 ------M-------CIIFF---------LFFFSISAFILFVD-LFCFMYAAA-YVGCDLYVYK 141 (149)
Q Consensus 103 ------~-------~~i~~---------~~~~~~~~~l~~eD-s~~gi~aa~-~ag~~~~~~~ 141 (149)
. +.+|. ..+...++++.+=| ....|.+|+ .+|++|+.+.
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~ 323 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAII 323 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEc
Confidence 0 01222 14566688898877 567799898 8999999654
No 155
>PLN02151 trehalose-phosphatase
Probab=98.10 E-value=7.2e-06 Score=67.98 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=45.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
-.++++|+||||.+. .++.....+.|++.+.|+.|.+ +.+++|+||++... +...+.
T Consensus 98 ~~ll~lDyDGTL~PI----v~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~-l~~~~~ 154 (354)
T PLN02151 98 QIVMFLDYDGTLSPI----VDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREK-VSSFVK 154 (354)
T ss_pred ceEEEEecCccCCCC----CCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHH-HHHHcC
Confidence 467889999999974 2334446788999999999995 57999999999888 576664
No 156
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.05 E-value=7.7e-06 Score=73.41 Aligned_cols=62 Identities=26% Similarity=0.350 Sum_probs=49.3
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.++++||+||||++.. .......+.+.+.+.|+.|.+. |+.++|+||++... .+..+...++
T Consensus 492 ~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~-l~~~~~~~~l 554 (726)
T PRK14501 492 RRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDT-LERWFGDLPI 554 (726)
T ss_pred ceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHH-HHHHhCCCCe
Confidence 5899999999999841 1222235778999999999994 99999999999998 5877776553
No 157
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.03 E-value=8.4e-06 Score=64.09 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=44.0
Q ss_pred CCCccCccHHHHHHHH--HHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 45 EIPYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~L--k~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+.+++.||+.++++.+ ++.|+.++|+|.+..-. ++.+|++.|+...|+.+
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~f-I~~iL~~~gl~~~f~~I 119 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFF-IETILEHHGLRDCFSEI 119 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhH-HHHHHHhCCCccccceE
Confidence 4578999999999999 45799999999998888 79999999999887655
No 158
>PLN02580 trehalose-phosphatase
Probab=98.02 E-value=1.5e-05 Score=66.79 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=47.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
-.++++|.||||.+. .++.....+.|++.+.|+.|.+. .+++|+|||+... ++.++.-
T Consensus 119 ~~~LfLDyDGTLaPI----v~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~-L~~~l~~ 176 (384)
T PLN02580 119 KIALFLDYDGTLSPI----VDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK-VYELVGL 176 (384)
T ss_pred CeEEEEecCCccCCC----CCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH-HHHHhCC
Confidence 467888999999985 24445578899999999999998 5899999999988 5777654
No 159
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.97 E-value=1.6e-05 Score=60.80 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--------Ccccc------------cccCCChh
Q 032013 44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--------MFVPM------------VRLSCCIM 103 (149)
Q Consensus 44 ~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--------~f~~~------------~~~~p~p~ 103 (149)
.+..++.||++|+..+|+++|.++.++||+-+.. +..+..++|++. .|+.. .....++.
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~ 162 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE 162 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence 3456899999999999999999999999999888 799999999975 12221 01133443
Q ss_pred HHHHHHhhCCCcceEEEeehHhHHHH
Q 032013 104 CIIFFLFFFSISAFILFVDLFCFMYA 129 (149)
Q Consensus 104 ~~i~~~~~~~~~~~l~~eDs~~gi~a 129 (149)
..-++..+++.+.-..+=|-.+.+.|
T Consensus 163 ~i~~lrk~~~~~~~~mvGDGatDlea 188 (227)
T KOG1615|consen 163 VIALLRKNYNYKTIVMVGDGATDLEA 188 (227)
T ss_pred HHHHHHhCCChheeEEecCCcccccc
Confidence 35555566665666666677776665
No 160
>PLN02645 phosphoglycolate phosphatase
Probab=97.97 E-value=7.3e-06 Score=66.55 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cccCCChhHHHHHH--hhCCCcceEEE
Q 032013 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VRLSCCIMCIIFFL--FFFSISAFILF 120 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~~~p~p~~~i~~~--~~~~~~~~l~~ 120 (149)
........|++++-..+|+||.+........+...|...+|..+ ...||+|....++. .++++++|+.+
T Consensus 174 ~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~V 253 (311)
T PLN02645 174 KIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMV 253 (311)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEE
Confidence 33445566665434688899987632011222334444444433 12477774444443 45778999999
Q ss_pred eehH-hHHHHHHHhCCchhhh
Q 032013 121 VDLF-CFMYAAAYVGCDLYVY 140 (149)
Q Consensus 121 eDs~-~gi~aa~~ag~~~~~~ 140 (149)
.|++ .+|.+|++||++++.+
T Consensus 254 GD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 254 GDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred cCCcHHHHHHHHHcCCCEEEE
Confidence 9997 9999999999999865
No 161
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.91 E-value=1.8e-05 Score=61.97 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=41.1
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchH
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD 77 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~ 77 (149)
-++++||+||||.+.. ++.....+.|++.+.|+.|.+. +..++|+||++...
T Consensus 3 ~~~l~lD~DGTL~~~~----~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~ 55 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIV----PDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE 55 (244)
T ss_pred cEEEEEecCccccCCc----CCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence 4679999999999841 2334456889999999999877 56788999998766
No 162
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=97.90 E-value=1.4e-05 Score=51.56 Aligned_cols=45 Identities=16% Similarity=-0.119 Sum_probs=37.1
Q ss_pred ccCCChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhhh
Q 032013 97 RLSCCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~ 141 (149)
..||+|....++. .++++++|+++.|+ ..+|.+|+++||+++.+.
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~ 49 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVL 49 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEES
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEEC
Confidence 4589996655555 45677999999999 999999999999998764
No 163
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.90 E-value=2.4e-05 Score=71.51 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=47.6
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHH-HHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~L-k~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
+.+++++|+||||++. ......+.|++.++|+.| ++.|..++|+||++... ++..+...
T Consensus 595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~-L~~~f~~~ 654 (854)
T PLN02205 595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKT-LADWFSPC 654 (854)
T ss_pred cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHH-HHHHhCCC
Confidence 4689999999999973 111345778999999998 77799999999999998 68877543
No 164
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.89 E-value=3.9e-05 Score=56.88 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=70.4
Q ss_pred EEEecCCcccccccccc---ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHc-----CCCCC---
Q 032013 25 VVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKL-----GIHSM--- 91 (149)
Q Consensus 25 vifDlDGTLld~~~~~~---~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~-----gl~~~--- 91 (149)
|++|+|||++.++...+ --+. -...||+.++.+.++++||++.-+|+|+... .++..|+.. +++.-
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~ 80 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVL 80 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEE
Confidence 79999999999643211 1112 1577999999999999999999999998532 256777776 54431
Q ss_pred cccc--------cccCCChhHHHHH----H--hh-CC---CcceEEEeehHhHHHHHHHhCCc
Q 032013 92 FVPM--------VRLSCCIMCIIFF----L--FF-FS---ISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 92 f~~~--------~~~~p~p~~~i~~----~--~~-~~---~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
+... +....+| ..|= . .. ++ ..-.-.|=.....+.|=+++|++
T Consensus 81 ~sP~~l~~al~rEvi~~~p--~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 81 LSPDSLFSALHREVISKDP--EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred ECCcchhhhhhccccccCh--HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 1100 2334455 3332 2 11 12 13335566888999999999976
No 165
>PLN02382 probable sucrose-phosphatase
Probab=97.85 E-value=3.3e-05 Score=65.26 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=45.1
Q ss_pred cc-EEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 22 PR-LVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 22 ~k-~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
|+ +|+.||||||+++ .+.+ .+. +...++++.++++|+.++++|||+... +..+.+.+++...
T Consensus 8 ~~~lI~sDLDGTLL~~-----~~~~--~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~p 71 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH-----HDPE--NLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLTP 71 (413)
T ss_pred CCEEEEEcCCCcCcCC-----CCcc--chhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCCC
Confidence 44 5777999999983 1111 222 234455588999999999999999988 6888888876543
No 166
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=6.5e-05 Score=60.12 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
....+++++|.||||.+.- +......+.+++.++|+.|.++ ...++|+||++... .+.++.-.+
T Consensus 15 ~a~~~~~~lDyDGTl~~i~----~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~-l~~~~~v~~ 79 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIV----PHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAE-LERLFGVPG 79 (266)
T ss_pred cccceEEEEeccccccccc----cCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHhcCCCC
Confidence 3446889999999999863 3444567889999999999998 44699999999888 577766333
No 167
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.61 E-value=0.00016 Score=57.05 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=55.1
Q ss_pred ccEEEEecCCcccccccc---------------cc--ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH-H--HHH
Q 032013 22 PRLVVFDLDYTLWPFYCE---------------CC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-I--AKT 81 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~---------------~~--~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~-i--~~~ 81 (149)
..+|+.|+|-|++|...+ |+ -+....++.||+.|++++.-++|..+..+|||..+. . ...
T Consensus 79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~ 158 (274)
T COG2503 79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIE 158 (274)
T ss_pred CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHH
Confidence 459999999999997666 11 122346799999999999999999999999997643 1 356
Q ss_pred HHHHcCCCCCcc
Q 032013 82 FLHKLGIHSMFV 93 (149)
Q Consensus 82 ~l~~~gl~~~f~ 93 (149)
-|+..|++..-.
T Consensus 159 nLk~~g~~~~~~ 170 (274)
T COG2503 159 NLKSEGLPQVLE 170 (274)
T ss_pred HHHHcCcccccc
Confidence 677788876433
No 168
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.61 E-value=0.00016 Score=54.82 Aligned_cols=120 Identities=16% Similarity=0.037 Sum_probs=77.4
Q ss_pred CCCccEEEEecCCcccccccccc------------------------cc-CCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECC------------------------YE-DEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~------------------------~~-~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~ 73 (149)
.+.|-+|-||+|.|++-+.+.+. .. .+..-+.+-+++++..-+.+|-.+.++||+
T Consensus 60 G~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGR 139 (237)
T COG3700 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGR 139 (237)
T ss_pred CCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34467899999999987544421 11 133345556678888889999999999999
Q ss_pred CchHH---HHHHHHHcCCCCCcccc-cccCCChhHHHHHHhhC--CCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 74 PAPDI---AKTFLHKLGIHSMFVPM-VRLSCCIMCIIFFLFFF--SISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 74 ~~~~i---~~~~l~~~gl~~~f~~~-~~~~p~p~~~i~~~~~~--~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.+..+ ...+.+.+++......+ .+-+|.| .-|-+..- +-.--|.+-||-+.|.||+.||.+-|=.
T Consensus 140 t~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~--~qy~Kt~~i~~~~~~IhYGDSD~Di~AAkeaG~RgIRi 210 (237)
T COG3700 140 TPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKP--GQYTKTQWIQDKNIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred CCCcccccchhHHhhcccCCCcceeeccCCCCc--ccccccHHHHhcCceEEecCCchhhhHHHhcCccceeE
Confidence 87541 22333455664432222 3556666 44444221 1123478889999999999999886643
No 169
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.59 E-value=0.00059 Score=52.98 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=62.5
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL 98 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~ 98 (149)
.++.+++|+-|||... + ...||+.|++++|+.++.++-++||...++- ....|+++|+. ++..+++
T Consensus 6 ~v~gvLlDlSGtLh~e------~----~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~ 73 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIE------D----AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIF 73 (262)
T ss_pred ccceEEEeccceEecc------c----ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhc
Confidence 4788999999999972 2 3789999999999999999999999876541 35566677764 6667899
Q ss_pred CCChhHHHHHH
Q 032013 99 SCCIMCIIFFL 109 (149)
Q Consensus 99 ~p~p~~~i~~~ 109 (149)
.|.|.+.-|++
T Consensus 74 tsl~aa~~~~~ 84 (262)
T KOG3040|consen 74 TSLPAARQYLE 84 (262)
T ss_pred CccHHHHHHHH
Confidence 99999888886
No 170
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.49 E-value=0.00077 Score=60.93 Aligned_cols=102 Identities=14% Similarity=-0.017 Sum_probs=75.5
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
.+.+.+=.||+++-.-. =..+++|++.+.+++|+++|++++++||..... ++.+.+++|+..++. ..|.
T Consensus 548 ~~~v~va~~~~~~g~i~------l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~~~~~----~~p~ 616 (741)
T PRK11033 548 KTVVLVLRNDDVLGLIA------LQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGIDFRAG----LLPE 616 (741)
T ss_pred CEEEEEEECCEEEEEEE------EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCeecC----CCHH
Confidence 45577777888765211 112689999999999999999999999999998 899999999975443 2333
Q ss_pred hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
-.+.+--..+ ....++.+-|..|+..|.++|+.
T Consensus 617 ~K~~~v~~l~-~~~~v~mvGDgiNDapAl~~A~v 649 (741)
T PRK11033 617 DKVKAVTELN-QHAPLAMVGDGINDAPAMKAASI 649 (741)
T ss_pred HHHHHHHHHh-cCCCEEEEECCHHhHHHHHhCCe
Confidence 3233333333 33678888999999999999973
No 171
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=97.44 E-value=0.00012 Score=56.90 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=31.7
Q ss_pred EEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHH
Q 032013 26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFL 83 (149)
Q Consensus 26 ifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l 83 (149)
++|.||||.+.. ++.....+.+++.++|+.|.+. +..++|+||++... .+.+.
T Consensus 1 ~lDyDGTL~p~~----~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~-~~~~~ 54 (235)
T PF02358_consen 1 FLDYDGTLAPIV----DDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD-LERFG 54 (235)
T ss_dssp EEE-TTTSS-------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH-HHHH-
T ss_pred CcccCCccCCCC----CCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH-hHHhc
Confidence 689999999953 3344467889999999999887 44699999999776 45543
No 172
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0003 Score=53.51 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=38.2
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
..+.+-||.+++++++++++++++|+|++.... +..+++..+
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~f-I~~lfe~iv 111 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF-IYPLFEGIV 111 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchH-HHHHHHhhc
Confidence 346789999999999999999999999999988 799999876
No 173
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.37 E-value=0.00014 Score=57.24 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++++++|+||||+++ +. .......++++...+.++.++++||++... +..+++..++.
T Consensus 2 ~~ll~sDlD~Tl~~~------~~---~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~ 59 (247)
T PF05116_consen 2 PRLLASDLDGTLIDG------DD---EALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLP 59 (247)
T ss_dssp SEEEEEETBTTTBHC------HH---HHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-E
T ss_pred CEEEEEECCCCCcCC------CH---HHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCC
Confidence 467999999999942 11 122344455554447799999999999999 79999988764
No 174
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.25 E-value=0.00059 Score=62.94 Aligned_cols=65 Identities=20% Similarity=0.084 Sum_probs=47.9
Q ss_pred ccEEEEecCCccccccccccccC-----CCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYED-----EIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~-----~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
.+++++|.||||.+......... ....+.|++.+.|+.|.+. +-.++|+||++... .+..+...+
T Consensus 591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~-Le~~fg~~~ 661 (934)
T PLN03064 591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV-LDENFGEFD 661 (934)
T ss_pred ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence 47899999999998522110000 0345778899999999876 77899999999998 688886654
No 175
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.22 E-value=0.00043 Score=54.04 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013 45 EIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~ 95 (149)
+..+..||+.++++.++++|. .++|+|-+..-. ++.+++++++.+.|..+
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfF-Ie~~Lea~~~~d~F~~I 131 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFF-IEEILEAAGIHDLFSEI 131 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhH-HHHHHHHccHHHHHHHH
Confidence 447899999999999999986 999999888887 79999999998887765
No 176
>PRK10444 UMP phosphatase; Provisional
Probab=97.20 E-value=0.0019 Score=50.95 Aligned_cols=44 Identities=11% Similarity=-0.080 Sum_probs=34.8
Q ss_pred ccCCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhh
Q 032013 97 RLSCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVY 140 (149)
Q Consensus 97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~ 140 (149)
..||+|....++. .++++++|+++.|+. .+|.+|+++|++++.+
T Consensus 172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV 218 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILV 218 (248)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEE
Confidence 4588884444443 346789999999996 8999999999999865
No 177
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.19 E-value=0.00075 Score=61.47 Aligned_cols=64 Identities=23% Similarity=0.100 Sum_probs=48.3
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
.+++++|.||||.+..... .......+.|++.+.|+.|.+. +-.++|+||++... .+..+...+
T Consensus 507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~-L~~~~~~~~ 571 (797)
T PLN03063 507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI-LDKNFGEYN 571 (797)
T ss_pred CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH-HHHHhCCCC
Confidence 4789999999999742110 0123356888999999999876 78899999999998 688876543
No 178
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.14 E-value=0.0025 Score=49.69 Aligned_cols=44 Identities=11% Similarity=-0.086 Sum_probs=33.3
Q ss_pred ccCCChhHHHHHH--hhCCCcce-EEEeehH-hHHHHHHHhCCchhhh
Q 032013 97 RLSCCIMCIIFFL--FFFSISAF-ILFVDLF-CFMYAAAYVGCDLYVY 140 (149)
Q Consensus 97 ~~~p~p~~~i~~~--~~~~~~~~-l~~eDs~-~gi~aa~~ag~~~~~~ 140 (149)
..||+|...-++. .++.++++ +++.|++ .+|++|+++|++++.+
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 4588885444444 34556676 9999998 8999999999998765
No 179
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.11 E-value=0.0026 Score=54.78 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=71.2
Q ss_pred ccCCCccEEEEecCCcccccccccc-------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 17 QFENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 17 ~~~~~~k~vifDlDGTLld~~~~~~-------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
+..+..|++++|+|+|||.+=...+ +.......+....+.+..|+++|+-++|+|-+.... +...+..+.-.
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~khp~M 295 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKHPDM 295 (574)
T ss_pred hhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhCCCe
Confidence 3455578999999999998511100 111112455667789999999999999999888777 78888776521
Q ss_pred ----CCccccc---ccCCChhHHHHHHhhCCC--cceEEEeehHhHHHHHHHhC
Q 032013 90 ----SMFVPMV---RLSCCIMCIIFFLFFFSI--SAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 90 ----~~f~~~~---~~~p~p~~~i~~~~~~~~--~~~l~~eDs~~gi~aa~~ag 134 (149)
+-|.... -.|.+. .-=.+..++. .--+..+|+|.--.--++-+
T Consensus 296 iLkeedfa~~~iNW~~K~eN--irkIAkklNlg~dSmvFiDD~p~ErE~vk~~~ 347 (574)
T COG3882 296 ILKEEDFAVFQINWDPKAEN--IRKIAKKLNLGLDSMVFIDDNPAERELVKREL 347 (574)
T ss_pred EeeHhhhhhheecCCcchhh--HHHHHHHhCCCccceEEecCCHHHHHHHHhcC
Confidence 1122222 113333 3333344455 44455558888777666655
No 180
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.06 E-value=0.0015 Score=48.18 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=56.1
Q ss_pred CccHH----HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc-ccccc-----------CC-----ChhHHHHH
Q 032013 50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVRL-----------SC-----CIMCIIFF 108 (149)
Q Consensus 50 ~pg~~----e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~-~~~~~-----------~p-----~p~~~i~~ 108 (149)
+|++. ++|++++++|+++.|+|+++... ++.+++.+|+..... +.... .+ +. ...-
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~--~~l~ 163 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKA--EALK 163 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHH--HHHH
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHH--HHHH
Confidence 35555 99999999999999999998877 799999999876321 11110 00 22 1111
Q ss_pred Hh------hCCCcceEEEeehHhHHHHHH
Q 032013 109 LF------FFSISAFILFVDLFCFMYAAA 131 (149)
Q Consensus 109 ~~------~~~~~~~l~~eDs~~gi~aa~ 131 (149)
.. ..+...++++=||.+.+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 164 ELYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred HHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 12 466788999999999988764
No 181
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.95 E-value=0.0035 Score=57.72 Aligned_cols=87 Identities=13% Similarity=0.015 Sum_probs=66.0
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----------------------cccCCChhHH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----------------------VRLSCCIMCI 105 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----------------------~~~~p~p~~~ 105 (149)
+++|++.+.++.|++.|+++.++||..... +..+.+++|+...+... ......|...
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 689999999999999999999999999998 89999999997654322 1224555443
Q ss_pred HHHH--hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 106 IFFL--FFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 106 i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
.-+- .+-.-+.+...=|..|++.|.++|+.
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdV 638 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADI 638 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCCe
Confidence 3332 33233556667799999999999963
No 182
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.93 E-value=0.0024 Score=52.36 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=44.1
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC----CceEEEEeCCCc----hHHHHHHHHHcCCC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA----PDIAKTFLHKLGIH 89 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~----Gi~i~IaT~~~~----~~i~~~~l~~~gl~ 89 (149)
=.++||+||+|+.+ ..+.|++.++|+.|.++ .+|++++||+.- .. ++++-+.+|..
T Consensus 36 fgfafDIDGVL~RG----------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~r-A~~lS~~Lgv~ 99 (389)
T KOG1618|consen 36 FGFAFDIDGVLFRG----------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSR-AQELSALLGVE 99 (389)
T ss_pred eeEEEecccEEEec----------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhH-HHHHHHhhCCc
Confidence 36999999999985 25889999999999999 999999998742 23 45555666653
No 183
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.92 E-value=0.0022 Score=50.22 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=57.4
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCc----hHHHHHHHHHcCCC------CCcccccccCCChhHHHHHH--hhCCCcce
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPA----PDIAKTFLHKLGIH------SMFVPMVRLSCCIMCIIFFL--FFFSISAF 117 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~----~~i~~~~l~~~gl~------~~f~~~~~~~p~p~~~i~~~--~~~~~~~~ 117 (149)
++++.++++.++..+..+.++|+.+. ..+.+.+.+.+++. .+++.......++.+.-.+. .+++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 45667777888777777888887543 12133444555543 12333233344555555555 56777899
Q ss_pred EEEeehHhHHHHHHHhCCch
Q 032013 118 ILFVDLFCFMYAAAYVGCDL 137 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~ 137 (149)
++|-|+.|++..++.||.-+
T Consensus 219 i~~GD~~NDi~m~~~ag~~v 238 (272)
T PRK10530 219 VAFGDNFNDISMLEAAGLGV 238 (272)
T ss_pred EEeCCChhhHHHHHhcCceE
Confidence 99999999999999999754
No 184
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.002 Score=48.36 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=51.5
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcce-EEEeeh-
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAF-ILFVDL- 123 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~-l~~eDs- 123 (149)
..-.++...|..++++ .+++.+|++.... +....+..-++. ++..++...+- .+...+. .+| +.||||
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih--~~~l~i~g~h~--KV~~vrt---h~idlf~ed~~ 143 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIH--YDHLEIVGLHH--KVEAVRT---HNIDLFFEDSH 143 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccc--hhhhhhhcccc--cchhhHh---hccCccccccC
Confidence 4556777888888887 5788888876543 123344443432 44433222222 1111111 344 899988
Q ss_pred HhHHHHHHHhCCchhhh
Q 032013 124 FCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 124 ~~gi~aa~~ag~~~~~~ 140 (149)
+|-+++|+.||++|+..
T Consensus 144 ~na~~iAk~~~~~vili 160 (194)
T COG5663 144 DNAGQIAKNAGIPVILI 160 (194)
T ss_pred chHHHHHHhcCCcEEEe
Confidence 58889999999999874
No 185
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=96.67 E-value=0.0039 Score=48.14 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=36.8
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
+++||+||||+. +. ....|.+.++|+.|+.+ +.++++-++...-
T Consensus 13 l~lfdvdgtLt~------~r---~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k 56 (252)
T KOG3189|consen 13 LCLFDVDGTLTP------PR---QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSK 56 (252)
T ss_pred EEEEecCCcccc------cc---ccCCHHHHHHHHHHhhh-eEEEEeecHHHHH
Confidence 689999999997 33 25889999999999887 8999999887543
No 186
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=96.40 E-value=0.014 Score=45.95 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=72.2
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC-------CCCCcccccccCCChhHHHHHH----hhCCCcc
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-------IHSMFVPMVRLSCCIMCIIFFL----FFFSISA 116 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g-------l~~~f~~~~~~~p~p~~~i~~~----~~~~~~~ 116 (149)
..++++..+++..++.|+++.|-|+++... ...++.+.+ +..||+.--+.|..- ..|-+ ++.++.+
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~A-qKllfg~s~~gdl~~y~~gyfDt~iG~K~e~--~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAA-QKLLFGYSDAGDLRKYISGYFDTTIGLKVES--QSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHH-HHHHHcccCcchHHHHhhhhhhccccceehh--HHHHHHHHHhCCChhh
Confidence 688999999999999999999999998775 344444332 345777766777776 44444 5577788
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~~ 142 (149)
=|.+-|-+.=-.||+.||.++.+..|
T Consensus 200 iLfLTd~~~Ea~aa~~aGl~a~l~~r 225 (254)
T KOG2630|consen 200 ILFLTDVPREAAAARKAGLQAGLVSR 225 (254)
T ss_pred eEEeccChHHHHHHHhcccceeeeec
Confidence 89999999999999999999988776
No 187
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=95.91 E-value=0.051 Score=45.65 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=45.7
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-CCCCCc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-GIHSMF 92 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-gl~~~f 92 (149)
..++|-||=|+||++ ++.....-+.+..-|-.|=++|+.++|+|...+.. +.++-+++ |+-+.|
T Consensus 146 ~L~LvTFDgDvTLY~-------DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~~RL~GLL~a~ 210 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYE-------DGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYEERLHGLLDAF 210 (408)
T ss_pred CceEEEEcCCccccc-------CCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHHHHHHHHHHHH
Confidence 689999999999997 44444445566666666667799999999887766 56555554 554433
No 188
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=95.84 E-value=0.13 Score=40.79 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=52.3
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccc-----------------------------
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMV----------------------------- 96 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~----------------------------- 96 (149)
.+-+.+.++++.|+++|+++..+|.++.... ....|+.+|++ |+...
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~--fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID--FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC--ccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3456778999999999999999999986541 23445556663 21110
Q ss_pred --ccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHh
Q 032013 97 --RLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYV 133 (149)
Q Consensus 97 --~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~a 133 (149)
..|..-+..++-..+..|+.-|.+.|+.--+.+--+|
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a 197 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKA 197 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 0022111122223667777778888998887765544
No 189
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=95.76 E-value=0.012 Score=52.24 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=47.2
Q ss_pred cEEEEecCCcccccccccc------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCC
Q 032013 23 RLVVFDLDYTLWPFYCECC------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHS 90 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~ 90 (149)
+.|+.|+|||++.+++-.+ ++| -..|+..+....+++||++..+|++.... +.+.+|+.+.-+.
T Consensus 531 kIVISDIDGTITKSDvLGh~lp~iGkDW----Th~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG 602 (738)
T KOG2116|consen 531 KIVISDIDGTITKSDVLGHVLPMIGKDW----THTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG 602 (738)
T ss_pred cEEEecCCCceEhhhhhhhhhhhhcCcc----hhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC
Confidence 6799999999998644322 333 33699999999999999999999986432 1566776655433
No 190
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.69 E-value=0.062 Score=38.96 Aligned_cols=97 Identities=11% Similarity=-0.014 Sum_probs=71.4
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p 102 (149)
....-++++|+..+ -++++.+.+.+++|++. +.+.|+|+-.... +...++..|++.+-. -+..+|
T Consensus 15 d~~~~~v~~tiatg----------Gklf~ev~e~iqeL~d~-V~i~IASgDr~gs-l~~lae~~gi~~~rv---~a~a~~ 79 (152)
T COG4087 15 DSKAGKVLYTIATG----------GKLFSEVSETIQELHDM-VDIYIASGDRKGS-LVQLAEFVGIPVERV---FAGADP 79 (152)
T ss_pred eeecceEEEEEccC----------cEEcHhhHHHHHHHHHh-heEEEecCCcchH-HHHHHHHcCCceeee---ecccCH
Confidence 34566788998863 26999999999999999 9999999998888 688889889754321 223334
Q ss_pred --hHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013 103 --MCIIFFLFFFSISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 103 --~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag 134 (149)
...|-..++-.-+.|+.+=|-.|.+.|-++|-
T Consensus 80 e~K~~ii~eLkk~~~k~vmVGnGaND~laLr~AD 113 (152)
T COG4087 80 EMKAKIIRELKKRYEKVVMVGNGANDILALREAD 113 (152)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCcchHHHhhhcc
Confidence 22333333332278888889999999999883
No 191
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=95.60 E-value=0.11 Score=46.89 Aligned_cols=101 Identities=12% Similarity=-0.035 Sum_probs=69.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
-+.+.+-.|++++-.-.. . -++.|++.+.+++|++.|+++.++||..... +..+.+++|+++++. .-.
T Consensus 426 ~r~l~va~~~~~lG~i~l--~----D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~a-----~~~ 493 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYL--K----DIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFIA-----EAT 493 (675)
T ss_pred CeEEEEEECCEEEEEEEe--c----ccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEEc-----CCC
Confidence 455666667887652110 1 2689999999999999999999999999888 899999999976543 233
Q ss_pred hhHHHHH--HhhCCCcceEEEeehHhHHHHHHHhC
Q 032013 102 IMCIIFF--LFFFSISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 102 p~~~i~~--~~~~~~~~~l~~eDs~~gi~aa~~ag 134 (149)
|....-. ..+-.-......=|..|..-|=++|+
T Consensus 494 PedK~~~v~~lq~~g~~VamvGDG~NDapAL~~Ad 528 (675)
T TIGR01497 494 PEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQAD 528 (675)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCC
Confidence 4333222 22212123444458888888877775
No 192
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=95.08 E-value=0.1 Score=48.39 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=62.4
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--------Cccc------------------ccccCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--------MFVP------------------MVRLSCC 101 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--------~f~~------------------~~~~~p~ 101 (149)
++.|++.+.++.|++.|+++.++||..... +..+.+++|+.. .++. .......
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 689999999999999999999999998888 899999999853 1111 1122334
Q ss_pred hhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 102 IMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 102 p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
|.....+. .+-.-+.+..+=|..|.+.|.++|+.
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV 651 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI 651 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe
Confidence 43332222 33222455556699999999999975
No 193
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=95.06 E-value=0.11 Score=37.72 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=43.3
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe--CCCchHHHHHHHHHcCCCC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT--~~~~~~i~~~~l~~~gl~~ 90 (149)
-.-++|+||.+++. ... -.....++++++.+.|.|+.|+| +.++.. ++.+-..++-.-
T Consensus 44 giAildL~G~~l~l-----~S~----R~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~l 103 (138)
T PF04312_consen 44 GIAILDLDGELLDL-----KSS----RNMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVL 103 (138)
T ss_pred EEEEEecCCcEEEE-----Eee----cCCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCcc
Confidence 35788999999984 121 12366799999999999999999 555566 677777777543
No 194
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.78 E-value=0.034 Score=46.72 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=40.2
Q ss_pred ccEEEEecCCcccccccc-----ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 22 PRLVVFDLDYTLWPFYCE-----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~-----~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
-+.+.||+||||++.... ...+| ..++|.+..=|+.|.+.||.++|.||..
T Consensus 75 ~K~i~FD~dgtlI~t~sg~vf~~~~~dw--~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 75 SKIIMFDYDGTLIDTKSGKVFPKGSMDW--RILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred cceEEEecCCceeecCCcceeeccCccc--eeeccccchhhhhhccCCeEEEEEeccc
Confidence 477999999999996331 11233 3678888899999999999999999764
No 195
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.50 E-value=0.073 Score=48.19 Aligned_cols=94 Identities=22% Similarity=0.134 Sum_probs=64.0
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChh
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM 103 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~ 103 (149)
.+++-.||.+.-.-. -. -++.|++.+.+++||++|+++.++||-.+.. ++.+.+++|+++++- ...|+..
T Consensus 519 ~v~va~dg~~~g~i~--~~----D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~A---ellPedK 588 (713)
T COG2217 519 VVFVAVDGKLVGVIA--LA----DELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVRA---ELLPEDK 588 (713)
T ss_pred EEEEEECCEEEEEEE--Ee----CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhhec---cCCcHHH
Confidence 688899997665211 01 2588999999999999999999999999998 899999999976543 3355554
Q ss_pred HHHHHHhhCCCcceEEEe-ehHhHHH
Q 032013 104 CIIFFLFFFSISAFILFV-DLFCFMY 128 (149)
Q Consensus 104 ~~i~~~~~~~~~~~l~~e-Ds~~gi~ 128 (149)
..+--+++ .-..-..+. |-.|.--
T Consensus 589 ~~~V~~l~-~~g~~VamVGDGINDAP 613 (713)
T COG2217 589 AEIVRELQ-AEGRKVAMVGDGINDAP 613 (713)
T ss_pred HHHHHHHH-hcCCEEEEEeCCchhHH
Confidence 43333333 111334443 5444433
No 196
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=93.72 E-value=0.11 Score=46.88 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=41.1
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
++.|++.+.+++||+.|+++.++||-.... +..+.+++|+.++|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~ 484 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV 484 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE
Confidence 688999999999999999999999999998 89999999998655
No 197
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.66 E-value=0.19 Score=39.78 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHCCceEEEE---eCCCchHHHHHHHHHcCCC----CCcccccccCCChhHHHHHH--hhCCC-cceEEEeehHhHHHHH
Q 032013 61 KEKGIHVAVA---SRSPAPDIAKTFLHKLGIH----SMFVPMVRLSCCIMCIIFFL--FFFSI-SAFILFVDLFCFMYAA 130 (149)
Q Consensus 61 k~~Gi~i~Ia---T~~~~~~i~~~~l~~~gl~----~~f~~~~~~~p~p~~~i~~~--~~~~~-~~~l~~eDs~~gi~aa 130 (149)
+..++..+++ |+..... +...++..++. .++..+.....+-.+.-++. .++++ +++++|-|+.|++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~ 223 (273)
T PRK00192 145 KDREFSEPFLWNGSEAAKER-FEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPML 223 (273)
T ss_pred HhcccCCceeecCchHHHHH-HHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHH
Confidence 3444444444 3333344 45555655654 33333321122332333333 66889 9999999999999999
Q ss_pred HHhCCchhh
Q 032013 131 AYVGCDLYV 139 (149)
Q Consensus 131 ~~ag~~~~~ 139 (149)
..||..+.+
T Consensus 224 ~~ag~~vam 232 (273)
T PRK00192 224 EAADIAVVV 232 (273)
T ss_pred HhCCeeEEe
Confidence 999977655
No 198
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=93.52 E-value=0.12 Score=46.61 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.4
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
+.+.+-.|++++-.-. -. -++.|++.+.+++||+.|+++.++||-.... +..+.+++|++++|
T Consensus 426 ~~l~va~~~~~lG~i~--l~----D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~ 488 (679)
T PRK01122 426 TPLVVAEDNRVLGVIY--LK----DIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL 488 (679)
T ss_pred cEEEEEECCeEEEEEE--Ee----ccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence 4455555777664210 01 2688999999999999999999999999998 89999999997654
No 199
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.23 E-value=0.049 Score=40.53 Aligned_cols=18 Identities=22% Similarity=-0.009 Sum_probs=14.8
Q ss_pred ccEEEEecCCcccccccc
Q 032013 22 PRLVVFDLDYTLWPFYCE 39 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~ 39 (149)
+++|+||.||||++++..
T Consensus 1 i~~i~fDktGTLt~~~~~ 18 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMS 18 (215)
T ss_dssp ESEEEEECCTTTBESHHE
T ss_pred CeEEEEecCCCcccCeEE
Confidence 478999999999986443
No 200
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.20 E-value=0.19 Score=38.18 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=43.9
Q ss_pred EeCCCchHHHHHHHHHcCCC----CCccccc-ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 70 ASRSPAPDIAKTFLHKLGIH----SMFVPMV-RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 70 aT~~~~~~i~~~~l~~~gl~----~~f~~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.++..... +...++..++. .+|..+. ....++.+.-++. .+++++++++|-||.|++.....||--+.|
T Consensus 145 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 145 DSDSRMPR-FTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CchhHHHH-HHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 34444445 45666666665 3443332 2223333455554 667789999999999999999999976543
No 201
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=92.59 E-value=0.16 Score=43.58 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=39.3
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---------CCCCCcccccccCCCh
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSCCI 102 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---------gl~~~f~~~~~~~p~p 102 (149)
+..-|.+..+|++|++.|.++.++||++... +...++.+ .+.++||.+....-+|
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP 245 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKP 245 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCECEEEES--CC
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhheeEEEEcCCCC
Confidence 4455788899999999999999999999988 78888765 3677899886665555
No 202
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=92.56 E-value=0.12 Score=44.28 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=39.5
Q ss_pred CCccEEEEecCCcccccccccc------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch
Q 032013 20 NLPRLVVFDLDYTLWPFYCECC------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~ 76 (149)
...+.|++|+|||++.++.-.+ ++| -.-|+..+......+||++.-.|+++..
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw----th~gVAkLYtdI~rNGYkI~YltsR~~G 431 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVKQMIGKDW----THNGVAKLYTDIDRNGYKIKYLTSRSYG 431 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHHHHhccch----hhcchhhhhhhhccCceEEEEEeccccc
Confidence 3457899999999998532211 222 2358888888888999999999998754
No 203
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=91.74 E-value=0.095 Score=38.45 Aligned_cols=13 Identities=46% Similarity=0.452 Sum_probs=11.4
Q ss_pred EEEecCCcccccc
Q 032013 25 VVFDLDYTLWPFY 37 (149)
Q Consensus 25 vifDlDGTLld~~ 37 (149)
++||+||||++.+
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999864
No 204
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=91.71 E-value=0.6 Score=35.27 Aligned_cols=73 Identities=8% Similarity=-0.038 Sum_probs=46.6
Q ss_pred eEEEEeCCCchHHHHHHHHHcCCCCC-------cccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013 66 HVAVASRSPAPDIAKTFLHKLGIHSM-------FVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCD 136 (149)
Q Consensus 66 ~i~IaT~~~~~~i~~~~l~~~gl~~~-------f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~ 136 (149)
...+.+...... +...++.++.... ++......++..+.-++. .+++++++++|-|++|++..++.||.-
T Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~ 187 (225)
T TIGR01482 109 LVKMRYGIDVDT-VREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFG 187 (225)
T ss_pred eEEEeecCCHHH-HHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCce
Confidence 345555555555 5777777765311 111112234444455554 567779999999999999999999976
Q ss_pred hhh
Q 032013 137 LYV 139 (149)
Q Consensus 137 ~~~ 139 (149)
+.+
T Consensus 188 vam 190 (225)
T TIGR01482 188 VAV 190 (225)
T ss_pred EEc
Confidence 544
No 205
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=91.60 E-value=0.34 Score=44.14 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
++.|++.+.+++|++.|+++.++||-.... +..+.+++|+..
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence 688999999999999999999999999998 899999999964
No 206
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=91.38 E-value=0.45 Score=41.42 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCC
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM 91 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~ 91 (149)
+.++..++.| +.+|+|.+++-. ++.+++. +|.+..
T Consensus 100 e~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~V 135 (498)
T PLN02499 100 EAWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADEV 135 (498)
T ss_pred HHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCceE
Confidence 4566777788 999999999888 7999998 787643
No 207
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=91.20 E-value=2.2 Score=34.26 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHCCceEEEEeCCCc------------hHHHHHHHHHcCCCCCcccccccCCChhHHHHHH----hhCCCc
Q 032013 52 HAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL----FFFSIS 115 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi~i~IaT~~~~------------~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~----~~~~~~ 115 (149)
...+++..+++. .-.|+||..+ -. ....+++.+=... ....||+| .||-+ ++...+
T Consensus 137 ~l~~a~~~i~~g--~~fI~tNpD~~~p~~~g~~pgaGa-i~~~~~~~tg~~~---~~~GKP~~--~i~~~al~~~~~~~~ 208 (269)
T COG0647 137 KLAEALLAIAAG--APFIATNPDLTVPTERGLRPGAGA-IAALLEQATGREP---TVIGKPSP--AIYEAALEKLGLDRS 208 (269)
T ss_pred HHHHHHHHHHcC--CcEEEeCCCccccCCCCCccCcHH-HHHHHHHhhCCcc---cccCCCCH--HHHHHHHHHhCCCcc
Confidence 345667666654 5667998753 22 2334444332222 34668888 55544 334446
Q ss_pred ceEEEe-ehHhHHHHHHHhCCchhhh
Q 032013 116 AFILFV-DLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 116 ~~l~~e-Ds~~gi~aa~~ag~~~~~~ 140 (149)
+++.+= +....|.+|+++||+++.+
T Consensus 209 ~~~mVGD~~~TDI~~a~~~G~~t~LV 234 (269)
T COG0647 209 EVLMVGDRLDTDILGAKAAGLDTLLV 234 (269)
T ss_pred cEEEEcCCchhhHHHHHHcCCCEEEE
Confidence 776665 5678999999999998764
No 208
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=0.53 Score=38.96 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=42.4
Q ss_pred EEEEecCCcccccccccc---------ccCCCCccCccHHHHHHHHHHCC-ceEEEEeCCCchH
Q 032013 24 LVVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD 77 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~---------~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~ 77 (149)
.++.|+|.|+...++... -......++||+-.+.+.|.+.| .++..+||++...
T Consensus 163 giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~ 226 (373)
T COG4850 163 GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL 226 (373)
T ss_pred eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence 389999999998766521 11222478999999999999998 8999999998653
No 209
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=91.10 E-value=0.33 Score=45.55 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=38.6
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.+.+++++++|+++.++||++... +..+.+++|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999998 89999999984
No 210
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=89.93 E-value=1 Score=36.81 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=65.7
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH-------------HHHHHHHH
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-------------IAKTFLHK 85 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~-------------i~~~~l~~ 85 (149)
++.+++|++++|--+- ++....++++|++-+..+ ++||+..-. ++..+-..
T Consensus 151 d~~VgAVvvg~D~hfs---------------y~KL~kA~~yLqnP~clf-latn~D~~~p~~~~~~ipG~G~~v~av~~~ 214 (306)
T KOG2882|consen 151 DPDVGAVVVGYDEHFS---------------YPKLMKALNYLQNPGCLF-LATNRDATTPPTPGVEIPGAGSFVAAVKFA 214 (306)
T ss_pred CCCCCEEEEecccccC---------------HHHHHHHHHHhCCCCcEE-EeccCccccCCCCCeeccCCccHHHHHHHH
Confidence 3446777777774333 356678999999888755 789886411 01222222
Q ss_pred cCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhh
Q 032013 86 LGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVY 140 (149)
Q Consensus 86 ~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~ 140 (149)
.|- +.....||+|...-++. .+.+|++|+.+=|+. ..|+=|++.|++|++.
T Consensus 215 t~R----~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLv 268 (306)
T KOG2882|consen 215 TGR----QPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLV 268 (306)
T ss_pred hcC----CCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEE
Confidence 221 12346699984444444 446679999998876 4899999999998764
No 211
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=88.64 E-value=1 Score=34.13 Aligned_cols=39 Identities=8% Similarity=-0.193 Sum_probs=31.0
Q ss_pred ChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 101 CIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 101 ~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
++.+.-++. .+++++++++|-|+.|++..+..||..+.+
T Consensus 158 Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam 198 (230)
T PRK01158 158 KGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAV 198 (230)
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEe
Confidence 344455555 567779999999999999999999987655
No 212
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=88.60 E-value=0.39 Score=39.16 Aligned_cols=46 Identities=13% Similarity=-0.088 Sum_probs=34.6
Q ss_pred cccCCChhHHHHHHhhC---------------CCcceEEEeehH-hHHHHHHHhCCchhhhh
Q 032013 96 VRLSCCIMCIIFFLFFF---------------SISAFILFVDLF-CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 96 ~~~~p~p~~~i~~~~~~---------------~~~~~l~~eDs~-~gi~aa~~ag~~~~~~~ 141 (149)
...||+|..+-++...+ ++++++.+-|++ .+|..|+++|++++.++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~ 291 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVK 291 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEec
Confidence 45799995555543222 336899999998 99999999999998664
No 213
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=88.58 E-value=0.74 Score=42.88 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=38.8
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.+.+++|++.|+++.++||-.... +..+.+++|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999888 89999999995
No 214
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=88.50 E-value=0.85 Score=42.59 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=38.9
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.++++.|++.|+++.++||-.... +..+.+++|+.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~ 619 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGIL 619 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCC
Confidence 688999999999999999999999999998 89999999985
No 215
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=87.98 E-value=0.78 Score=42.71 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.+++++|++.|+++.++||-.... +..+.+++|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999888 89999999995
No 216
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=87.91 E-value=3 Score=30.71 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=54.1
Q ss_pred HHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHc
Q 032013 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~ 86 (149)
++++........+.-..|++|..|-.+++ ++..+.|+.+...|. .++++-|++... ...+.+..
T Consensus 54 ~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGG~~G~-~~~~~~~a 118 (155)
T PF02590_consen 54 EKEGERILKKIPPNDYVILLDERGKQLSS--------------EEFAKKLERWMNQGKSDIVFIIGGADGL-SEEVRKRA 118 (155)
T ss_dssp HHHHHHHHCTSHTTSEEEEE-TTSEE--H--------------HHHHHHHHHHHHTTS-EEEEEE-BTTB---HHHHHH-
T ss_pred HHHHHHHHhhccCCCEEEEEcCCCccCCh--------------HHHHHHHHHHHhcCCceEEEEEecCCCC-CHHHHhhc
Confidence 34455554444445567999999999983 577889999999988 899999988775 56666665
Q ss_pred CCCCCcccccccCCChhHHHHHHhh
Q 032013 87 GIHSMFVPMVRLSCCIMCIIFFLFF 111 (149)
Q Consensus 87 gl~~~f~~~~~~~p~p~~~i~~~~~ 111 (149)
+. .++.....-||.++.+.+.++
T Consensus 119 ~~--~lSLS~mTfpH~larlvL~EQ 141 (155)
T PF02590_consen 119 DE--KLSLSKMTFPHQLARLVLLEQ 141 (155)
T ss_dssp SE--EEES-SS---HHHHHHHHHHH
T ss_pred Cc--eEEEecCCCcHHHHHHHHHHH
Confidence 42 244455667888888887643
No 217
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=87.81 E-value=0.92 Score=42.96 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=38.8
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.++++.|++.|+++.++||..... +..+.+++|+.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~ 686 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGII 686 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999998 89999999995
No 218
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=87.52 E-value=1 Score=42.62 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=38.6
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.++++.|++.|+++.++||..... +..+.+++|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999999998 89999999984
No 219
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=87.48 E-value=2.8 Score=38.88 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=38.7
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.|++.+.+++|++.|+++.++||-.... +..+.+++|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence 688999999999999999999999998888 89999999996
No 220
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=87.48 E-value=4 Score=38.06 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=59.9
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
-..+.+=+||+|.--... . -.+.|++..+++.|++.|+++++.||-.... ++...+++|++..+. ..+|+
T Consensus 703 ~tvv~v~vn~~l~gv~~l--~----D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~a---ev~P~ 772 (951)
T KOG0207|consen 703 QTVVYVAVNGQLVGVFAL--E----DQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVYA---EVLPE 772 (951)
T ss_pred ceEEEEEECCEEEEEEEe--c----cccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEEe---ccCch
Confidence 456888999999873211 1 2588999999999999999999999999998 899999999554322 34666
Q ss_pred hhHHHHHHhh
Q 032013 102 IMCIIFFLFF 111 (149)
Q Consensus 102 p~~~i~~~~~ 111 (149)
-...+--.++
T Consensus 773 ~K~~~Ik~lq 782 (951)
T KOG0207|consen 773 QKAEKIKEIQ 782 (951)
T ss_pred hhHHHHHHHH
Confidence 5555544433
No 221
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=87.41 E-value=5.8 Score=29.29 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=58.7
Q ss_pred hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHH
Q 032013 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~ 85 (149)
+++++........+.-..|++|-.|..+++ +...+.|+.....|. .+.++-|++... .+.+.++
T Consensus 53 ~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGGa~G~-~~~v~~~ 117 (157)
T PRK00103 53 KAKEGERILAALPKGARVIALDERGKQLSS--------------EEFAQELERWRDDGRSDVAFVIGGADGL-SPAVKKR 117 (157)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCccEEEEEcCcccc-CHHHHHh
Confidence 344554443333333357999999999973 466788888888886 799999887654 4555555
Q ss_pred cCCCCCcccccccCCChhHHHHHHhh
Q 032013 86 LGIHSMFVPMVRLSCCIMCIIFFLFF 111 (149)
Q Consensus 86 ~gl~~~f~~~~~~~p~p~~~i~~~~~ 111 (149)
.+. .+......=||.++.+.+.++
T Consensus 118 a~~--~lSLS~mTfpH~larlvL~EQ 141 (157)
T PRK00103 118 ADQ--SLSLSKLTLPHQLVRVLLAEQ 141 (157)
T ss_pred cCc--eEEeccCCCcHHHHHHHHHHH
Confidence 443 244445667899988887644
No 222
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=87.23 E-value=3.9 Score=35.18 Aligned_cols=100 Identities=19% Similarity=0.078 Sum_probs=64.1
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
.+.+.+=.|++++..-. -..++.|++.+.+++|++.|+++.++||..... +....+++|+. ....|.
T Consensus 327 ~~~~~~a~~~~~~g~i~------l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi~------~~~~p~ 393 (499)
T TIGR01494 327 LRVLAVASKETLLGLLG------LEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGIF------ARVTPE 393 (499)
T ss_pred CEEEEEEECCeEEEEEE------ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCce------eccCHH
Confidence 45555556776664211 112688999999999999999999999999988 89999999871 112333
Q ss_pred hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013 102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag 134 (149)
--..+--...-.-......=|-.|..-|-++|+
T Consensus 394 ~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Ad 426 (499)
T TIGR01494 394 EKAALVEALQKKGRVVAMTGDGVNDAPALKKAD 426 (499)
T ss_pred HHHHHHHHHHHCCCEEEEECCChhhHHHHHhCC
Confidence 222222222211133444448888887777764
No 223
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=87.13 E-value=5.9 Score=29.34 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=61.4
Q ss_pred hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
+++++..+.....+.-.+|.+|+.|.-+++ +...+.|+.++..|-.+.++=|++... ...+.++.
T Consensus 53 ~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sS--------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl-~~~~~~~a 117 (155)
T COG1576 53 KKKEGEAILAAIPKGSYVVLLDIRGKALSS--------------EEFADFLERLRDDGRDISFLIGGADGL-SEAVKARA 117 (155)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCcCCh--------------HHHHHHHHHHHhcCCeEEEEEeCcccC-CHHHHHHH
Confidence 445566665555555688999999999973 467789999999998888888887654 45555544
Q ss_pred CCCCCcccccccCCChhHHHHHHhh
Q 032013 87 GIHSMFVPMVRLSCCIMCIIFFLFF 111 (149)
Q Consensus 87 gl~~~f~~~~~~~p~p~~~i~~~~~ 111 (149)
... ++.....=||++..+.+..+
T Consensus 118 ~~~--~sls~lT~PHql~rlvL~EQ 140 (155)
T COG1576 118 DQV--LSLSKLTLPHQLVRLVLAEQ 140 (155)
T ss_pred hhh--eecccccchhHHHHHHHHHH
Confidence 432 33344557888887777643
No 224
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=86.74 E-value=1.7 Score=32.53 Aligned_cols=111 Identities=21% Similarity=0.103 Sum_probs=66.7
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-C-ceEEEEeCCCc-------hHHHHHHHHHcCCCCC
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-G-IHVAVASRSPA-------PDIAKTFLHKLGIHSM 91 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-G-i~i~IaT~~~~-------~~i~~~~l~~~gl~~~ 91 (149)
.+|++++|-|++++- +.. ..+.|....-+++++.. | ..++++||+.- .+.+..+-++.|++-.
T Consensus 42 ~ikavVlDKDNcit~------P~~--~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl 113 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA------PYS--LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL 113 (190)
T ss_pred CceEEEEcCCCeeeC------Ccc--cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence 589999999999996 222 35777777888888875 3 78999998742 2323444445666421
Q ss_pred cccccccCCChhHHHHHHh-----hCCCcceEEEeeh-HhHHHHHHHhCCchhhhh
Q 032013 92 FVPMVRLSCCIMCIIFFLF-----FFSISAFILFVDL-FCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 92 f~~~~~~~p~p~~~i~~~~-----~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~ 141 (149)
.....||.=-.+++=+. ..++++-+++-|- ...|.-|+.-|.=.+...
T Consensus 114 --RHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~ 167 (190)
T KOG2961|consen 114 --RHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTE 167 (190)
T ss_pred --eecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEec
Confidence 11122333322444331 1455666666664 457777777775444433
No 225
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=86.73 E-value=0.27 Score=39.36 Aligned_cols=103 Identities=15% Similarity=0.008 Sum_probs=63.5
Q ss_pred CCccEEEEecCCccccccc--cc--c---------c---cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013 20 NLPRLVVFDLDYTLWPFYC--EC--C---------Y---EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~--~~--~---------~---~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l 83 (149)
.+.+++++|+|+||..... .+ . + ..-.+.-.|++.++|+...+. +.+++-|++.... +..++
T Consensus 87 ~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~ 164 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLL 164 (262)
T ss_pred CCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHH
Confidence 3458999999999988652 11 0 0 011134569999999998887 8999999998887 78888
Q ss_pred HHcCC-CCCcccccccCC--ChhHHHHHH----hhCCCcceEEEeehHh
Q 032013 84 HKLGI-HSMFVPMVRLSC--CIMCIIFFL----FFFSISAFILFVDLFC 125 (149)
Q Consensus 84 ~~~gl-~~~f~~~~~~~p--~p~~~i~~~----~~~~~~~~l~~eDs~~ 125 (149)
..+.- ...+... -+.. ..-.-.|.+ .+-+.++.++++|||.
T Consensus 165 D~LD~~~~i~~~R-lyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~ 212 (262)
T KOG1605|consen 165 DILDPDRKIISHR-LYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQ 212 (262)
T ss_pred HHccCCCCeeeee-ecccceEeECCcEEEEcceeccCcccEEEEcCChH
Confidence 87764 2222211 1100 000011111 3345578888888875
No 226
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=86.57 E-value=4.6 Score=32.45 Aligned_cols=103 Identities=22% Similarity=0.163 Sum_probs=57.0
Q ss_pred ccEEEEecCCcccccccc--cc-----------ccCCCCccCc----cHHHHHHHHHHC------CceEEEEeCCCchH-
Q 032013 22 PRLVVFDLDYTLWPFYCE--CC-----------YEDEIPYLYP----HAKGILEALKEK------GIHVAVASRSPAPD- 77 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~--~~-----------~~~~~~~~~p----g~~e~L~~Lk~~------Gi~i~IaT~~~~~~- 77 (149)
+| |.||-|++|.+-+-. +. ......++.+ .....|.+++++ -++++++|.+....
T Consensus 122 lR-IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah 200 (264)
T PF06189_consen 122 LR-IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAH 200 (264)
T ss_pred eE-EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchh
Confidence 44 999999999983111 10 1111122333 344555556553 47899999776543
Q ss_pred -HHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHH
Q 032013 78 -IAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAA 131 (149)
Q Consensus 78 -i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~ 131 (149)
.+..-|+..|+. ++...-...-|...+.-+. ..=|.|+|...=+.+|.
T Consensus 201 ~RvI~TLr~Wgv~--vDEafFLgG~~K~~vL~~~----~phIFFDDQ~~H~~~a~ 249 (264)
T PF06189_consen 201 ERVIRTLRSWGVR--VDEAFFLGGLPKGPVLKAF----RPHIFFDDQDGHLESAS 249 (264)
T ss_pred HHHHHHHHHcCCc--HhHHHHhCCCchhHHHHhh----CCCEeecCchhhhhHhh
Confidence 144556666763 4433211222211222222 24489999999999887
No 227
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.02 E-value=1.1 Score=33.80 Aligned_cols=73 Identities=8% Similarity=-0.058 Sum_probs=45.9
Q ss_pred eEEEEeCCCchHHHHHHHHHcCCCCCccc--c---cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 66 HVAVASRSPAPDIAKTFLHKLGIHSMFVP--M---VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 66 ~i~IaT~~~~~~i~~~~l~~~gl~~~f~~--~---~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
..++.++..... +...++..++..+... . .....+..+.-++. .+++++++++|-||.|++.....||.-+.
T Consensus 109 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va 187 (215)
T TIGR01487 109 LVIMREGKDVDE-VREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA 187 (215)
T ss_pred EEEecCCccHHH-HHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence 344455655566 5777777766443221 1 11122333344444 55667889999999999999999997765
Q ss_pred h
Q 032013 139 V 139 (149)
Q Consensus 139 ~ 139 (149)
+
T Consensus 188 m 188 (215)
T TIGR01487 188 V 188 (215)
T ss_pred c
Confidence 5
No 228
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=85.86 E-value=5.5 Score=29.44 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=50.2
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH-hhCCCcceEEEeehHhH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL-FFFSISAFILFVDLFCF 126 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~-~~~~~~~~l~~eDs~~g 126 (149)
.+.|.+.++++++++.|+.+.+.||+..... ...+...|..+++.. .. +..+ ..|.. .+.+.... |+...+
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~~~-l~~l~~~g~~~~v~i-sl-~~~~--~~~~~~~g~~~~~~---~~~~~~ 145 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNPRV-LEELLEEGLVDYVAM-DV-KAPP--EKYPELYGLEKNGS---NNILKS 145 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCHHH-HHHHHhcCCCcEEEE-ec-cCCh--HHHHHHHCCCCchH---HHHHHH
Confidence 3556788999999999999999999976552 333344453232211 11 2222 33433 23322111 588888
Q ss_pred HHHHHHhCCchh
Q 032013 127 MYAAAYVGCDLY 138 (149)
Q Consensus 127 i~aa~~ag~~~~ 138 (149)
+.-.++.|+++.
T Consensus 146 i~~l~~~gi~~~ 157 (191)
T TIGR02495 146 LEILLRSGIPFE 157 (191)
T ss_pred HHHHHHcCCCEE
Confidence 888888887653
No 229
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=85.80 E-value=2.4 Score=34.82 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=46.4
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFM 127 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi 127 (149)
.+.|.+.++++.++++|+.+.+.||+...+ ....+ ..+++.... ..-.++| ..|-+..-+. .--.||.....+
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~e-~l~~L-~~~~d~i~V--SLda~~~--e~~~~i~~~~-~~~~~~~vl~~L 214 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTRPD-VLEKL-EEEPTQLYV--SLDAPDE--ETYKKINRPV-IPDAWERILETL 214 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCCHH-HHHHH-HhcCCEEEE--EccCCCH--HHHHHHhCCC-CCCcHHHHHHHH
Confidence 356789999999999999999999997765 33333 224332211 1223334 4444432110 011344555555
Q ss_pred HHHHHhCCch
Q 032013 128 YAAAYVGCDL 137 (149)
Q Consensus 128 ~aa~~ag~~~ 137 (149)
..+.+.|.++
T Consensus 215 ~~l~~~~~~~ 224 (322)
T PRK13762 215 ELLPSKKTRT 224 (322)
T ss_pred HHHHhCCCCE
Confidence 5555555544
No 230
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=84.58 E-value=1.9 Score=40.34 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=39.7
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
++.+++++.++.|++.|+++.++||-.... +..+.+++|+..-
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~ 589 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAE 589 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCC
Confidence 688999999999999999999999999888 8999999997553
No 231
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.46 E-value=1.4 Score=35.50 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=32.9
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
...+.+|..++++.|+.+++|+.|.|.+--.. ++.++++.
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdi-iEev~~q~ 175 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDI-IEEVTRQK 175 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHH-HHHHHHHH
Confidence 35677889999999999999999999987776 56666554
No 232
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=84.02 E-value=1.8 Score=38.18 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=45.5
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFF 108 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~ 108 (149)
.+.||.+|-+.+||+.|++.+.+||-.+-. +..+.++.|++++.- ...|...+-+
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~T-Aa~IA~EAGVDdfiA-----eatPEdK~~~ 501 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFIA-----EATPEDKLAL 501 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHH-HHHHHHHhCchhhhh-----cCChHHHHHH
Confidence 588999999999999999999999999888 899999999987542 3445445544
No 233
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=82.42 E-value=9.4 Score=31.21 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=46.6
Q ss_pred HHHHHCCceEEEEeCCCc-hHHHHHHHHH-cCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013 58 EALKEKGIHVAVASRSPA-PDIAKTFLHK-LGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC 135 (149)
Q Consensus 58 ~~Lk~~Gi~i~IaT~~~~-~~i~~~~l~~-~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~ 135 (149)
+.+++.|..+.|.||+-. .. +...|+. ++-.........-.+.|-..+ ++ -.+..+|=+||.+=+.-|.++|+
T Consensus 176 ~~~~~~~~~~~vttSRRTp~~-~~~~L~~~~~~~~~~~~~~~~~~nPy~~~---La-~ad~i~VT~DSvSMvsEA~~tG~ 250 (311)
T PF06258_consen 176 ALAAAYGGSLLVTTSRRTPPE-AEAALRELLKDNPGVYIWDGTGENPYLGF---LA-AADAIVVTEDSVSMVSEAAATGK 250 (311)
T ss_pred HHHHhCCCeEEEEcCCCCcHH-HHHHHHHhhcCCCceEEecCCCCCcHHHH---HH-hCCEEEEcCccHHHHHHHHHcCC
Confidence 444556767888877643 44 4555544 322121111133345552221 11 22455788899999999999999
Q ss_pred chhhhh
Q 032013 136 DLYVYK 141 (149)
Q Consensus 136 ~~~~~~ 141 (149)
+|+|+.
T Consensus 251 pV~v~~ 256 (311)
T PF06258_consen 251 PVYVLP 256 (311)
T ss_pred CEEEec
Confidence 999863
No 234
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=82.41 E-value=2.6 Score=39.95 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=39.9
Q ss_pred cEEE--EecCCccccccccccccCCCCccCccHHHHHHHHH----HCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 23 RLVV--FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 23 k~vi--fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk----~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++++ .|+|+| .+ ..+.++++++.++ +..+-++++||++..+ +..+++..++.
T Consensus 771 ~~~via~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp 828 (1050)
T TIGR02468 771 RLFVIAVDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLN 828 (1050)
T ss_pred eEEEEEeccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCC
Confidence 4455 799999 32 2245667788886 3348899999999999 79999999986
No 235
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=80.96 E-value=3.4 Score=38.34 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=39.5
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
++.|++.+.++.+++.|+++..+||-.... +..+.++.|+...
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~ 626 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSE 626 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcC
Confidence 688999999999999999999999999988 8999999997543
No 236
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=79.94 E-value=17 Score=26.75 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred HHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 8 ~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
++++........+ -.+|++|..|-.+++ +...+.|+.....|-.++++-|++... ...+.++.+
T Consensus 53 ~~E~~~il~~~~~-~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~i~FvIGGa~G~-~~~v~~~a~ 116 (153)
T TIGR00246 53 DKEGDRILAAIGK-AHVVTLDIPGKPWTT--------------PQLADTLEKWKTDGRDVTLLIGGPEGL-SPTCKAAAE 116 (153)
T ss_pred HHHHHHHHHhCCC-CeEEEEcCCCCcCCH--------------HHHHHHHHHHhccCCeEEEEEcCCCcC-CHHHHHhcC
Confidence 3444444333222 357889999999973 466788888888887799999988654 455555544
Q ss_pred CCCCcccccccCCChhHHHHHHhh
Q 032013 88 IHSMFVPMVRLSCCIMCIIFFLFF 111 (149)
Q Consensus 88 l~~~f~~~~~~~p~p~~~i~~~~~ 111 (149)
. .++.....=||.++.+.+.++
T Consensus 117 ~--~lSLS~mTfpH~larlvL~EQ 138 (153)
T TIGR00246 117 Q--SWSLSKLTLPHPLVRVIVAES 138 (153)
T ss_pred c--eEEeecCCCcHHHHHHHHHHH
Confidence 3 244455667999998888744
No 237
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=79.73 E-value=6.5 Score=32.12 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=30.1
Q ss_pred ccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHH
Q 032013 48 YLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~ 84 (149)
.++|..-++++.+|+.| ++++++||+..+. +..-++
T Consensus 92 TLy~~L~elI~~~k~~g~~~tflvTNgslpd-v~~~L~ 128 (296)
T COG0731 92 TLYPNLGELIEEIKKRGKKTTFLVTNGSLPD-VLEELK 128 (296)
T ss_pred ccccCHHHHHHHHHhcCCceEEEEeCCChHH-HHHHhc
Confidence 57789999999999999 7999999999866 454444
No 238
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=79.64 E-value=2.7 Score=33.04 Aligned_cols=90 Identities=14% Similarity=-0.036 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHH-H-------HHHHHHcCCCCCcccccccCCChhHHHHHH----hhCCCcce
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDI-A-------KTFLHKLGIHSMFVPMVRLSCCIMCIIFFL----FFFSISAF 117 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i-~-------~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~----~~~~~~~~ 117 (149)
+...-++++-|.+...+..|+-++.+... . -.+...+....-.....+.||+| ..|-. +++.|++|
T Consensus 124 y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~--~fFe~al~~~gv~p~~a 201 (262)
T KOG3040|consen 124 YQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSP--FFFESALQALGVDPEEA 201 (262)
T ss_pred HHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCH--HHHHHHHHhcCCChHHh
Confidence 34555788888888667777766654320 0 11222222222222335779999 55543 66788888
Q ss_pred -EEEeehHhHHHHHHHhCCchhhhh
Q 032013 118 -ILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 118 -l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
++=+|..-.+--|.+-||+.|.+|
T Consensus 202 VMIGDD~~dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 202 VMIGDDLNDDVGGAQACGMRGILVK 226 (262)
T ss_pred eEEccccccchhhHhhhcceeEEee
Confidence 455588888999999999998876
No 239
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=78.90 E-value=2.9 Score=39.64 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=38.4
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
++.|++.+.++.|++.|+++.++||-.... +..+.+..|+-.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~T-A~~IA~~~~ii~ 672 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVET-AINIGYSCRLLS 672 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCCCC
Confidence 688999999999999999999999999888 899999998743
No 240
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=78.87 E-value=2.1 Score=34.04 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
...+.+|+.++++.|+++++|+.|.|++-..- ++..+++.+.
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdv-I~~vL~q~~~ 129 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDV-IEEVLRQAGV 129 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHH-HHHHHHHTT-
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHH-HHHHHHHcCC
Confidence 46799999999999999999999999987776 7999998864
No 241
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=78.56 E-value=1.2 Score=38.86 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCC
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM 91 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~ 91 (149)
+.++.+++.|.. +|+|++++.. ++.+.+. +|++..
T Consensus 114 ~a~~~~~~~g~~-vvVSASp~~~-Vepfa~~~LGid~V 149 (497)
T PLN02177 114 ETWRVFNSFGKR-YIITASPRIM-VEPFVKTFLGADKV 149 (497)
T ss_pred HHHHHHHhCCCE-EEEECCcHHH-HHHHHHHcCCCCEE
Confidence 344566677765 9999999887 7999976 787753
No 242
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=78.13 E-value=1.4 Score=37.16 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=35.3
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---CCCCCcccc
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPM 95 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---gl~~~f~~~ 95 (149)
--|....+|+.|++.|.++.++||+|... +..-++.+ .+.++|+.+
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysF-Vd~GM~flvG~~WRdlFDVV 289 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSF-VDKGMRFLVGDDWRDLFDVV 289 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhh-hhcCceeeeCccHHhhhhee
Confidence 34577789999999999999999999887 56655543 355567665
No 243
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=77.03 E-value=12 Score=30.52 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=51.4
Q ss_pred ccCccHHHHHHHHHHCCc--eEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHh
Q 032013 48 YLYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFC 125 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi--~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~ 125 (149)
.+.++..++++++++.+. .+.+.||+..-.-....+...|+...-. ..-..+| ..|-+..- . -.|++...
T Consensus 73 llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~I--SlDs~~~--e~~~~i~~-~---g~~~~vl~ 144 (329)
T PRK13361 73 LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNI--SLDTLRP--ELFAALTR-N---GRLERVIA 144 (329)
T ss_pred CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEE--EeccCCH--HHhhhhcC-C---CCHHHHHH
Confidence 466788899999998764 7889998864210234555667654222 2224445 56655321 1 13788899
Q ss_pred HHHHHHHhCC
Q 032013 126 FMYAAAYVGC 135 (149)
Q Consensus 126 gi~aa~~ag~ 135 (149)
|+.+++++|.
T Consensus 145 ~i~~~~~~Gi 154 (329)
T PRK13361 145 GIDAAKAAGF 154 (329)
T ss_pred HHHHHHHcCC
Confidence 9999999998
No 244
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=76.86 E-value=13 Score=30.75 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=31.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCc--hHHHHHHHHHcCCCC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKLGIHS 90 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~--~~i~~~~l~~~gl~~ 90 (149)
..+.|+..+++++++++|+.+.+.||+.. .+ ....+...|+..
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~-~~~~L~~~g~~~ 117 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVGLTEA-RLAALKDAGLDH 117 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCccCCHH-HHHHHHHcCCCE
Confidence 34668889999999999999999999863 23 234455566543
No 245
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=75.54 E-value=7 Score=31.84 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.8
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCch
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAP 76 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~ 76 (149)
..+.|.+.++++.++++|..+.+.||+..-
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 356788999999999999999999998753
No 246
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.41 E-value=8.1 Score=34.58 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=41.7
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe--CCCchHHHHHHHHHcCCCC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT--~~~~~~i~~~~l~~~gl~~ 90 (149)
.-++|+||-+++. ....+ -..-+++++..+.|.|++|+| +..+.. +..+...+|-.-
T Consensus 257 iAvldldGevl~~-----~S~r~----~~~~eVve~I~~lG~PvvVAtDVtp~P~~-V~KiAasf~A~l 315 (652)
T COG2433 257 IAVLDLDGEVLDL-----ESRRG----IDRSEVVEFISELGKPVVVATDVTPAPET-VKKIAASFNAVL 315 (652)
T ss_pred EEEEecCCcEEee-----ecccc----CCHHHHHHHHHHcCCceEEEccCCCChHH-HHHHHHHcCCcc
Confidence 4788999999984 11111 133488899999999999999 555566 788888888643
No 247
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=75.30 E-value=14 Score=30.21 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=31.0
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCc--hHHHHHHHHHcCCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKLGIHS 90 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~--~~i~~~~l~~~gl~~ 90 (149)
.+.|+..++++.++++|+.+.+.||+.. ++ ....+...|+..
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e-~~~~L~~~g~~~ 108 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVGLTEA-RLDALADAGLDH 108 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCccCCHH-HHHHHHhCCCCE
Confidence 4668889999999999999999999863 33 234455566543
No 248
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=75.08 E-value=7.8 Score=32.66 Aligned_cols=69 Identities=17% Similarity=0.046 Sum_probs=50.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
+-++++|+.++|+..+-.+...++ ..-.||+.-+|.++. +.+.+++.|+..... +..+++.+.-..++.
T Consensus 189 ~yTLVleledvLVhpdws~~tGwR-f~kRPgvD~FL~~~a-~~yEIVi~sse~gmt-~~pl~d~lDP~g~Is 257 (393)
T KOG2832|consen 189 PYTLVLELEDVLVHPDWSYKTGWR-FKKRPGVDYFLGHLA-KYYEIVVYSSEQGMT-VFPLLDALDPKGYIS 257 (393)
T ss_pred CceEEEEeeeeEeccchhhhcCce-eccCchHHHHHHhhc-ccceEEEEecCCccc-hhhhHhhcCCcceEE
Confidence 347999999999963111112222 457799999999998 669999999998887 788888886555433
No 249
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=75.01 E-value=18 Score=30.82 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEE-eCCC---chHHHHHHHHHcCCCC
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVA-SRSP---APDIAKTFLHKLGIHS 90 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~Ia-T~~~---~~~i~~~~l~~~gl~~ 90 (149)
+.....|.+.++++.+++.|+++++. ||+. ..+ ....+...+++.
T Consensus 83 Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e-~~~~L~~~gld~ 131 (404)
T TIGR03278 83 GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPE-IAEFLIDNGVRE 131 (404)
T ss_pred cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHH-HHHHHHHcCCCE
Confidence 34557789999999999999999996 8864 334 344555556554
No 250
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=74.09 E-value=22 Score=23.45 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=41.6
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
.++.+++|+-++=.= ++. -..-..++.++++++|.++.++.-+ +. +...++..|+.+.+
T Consensus 38 ~~~~vilDls~v~~i-----Dss-----gi~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 38 PIKHLILNLKNVTFM-----DSS-----GLGVILGRYKKIKNEGGEVIVCNVS--PA-VKRLFELSGLFKII 96 (106)
T ss_pred CCCEEEEECCCCcEe-----cch-----HHHHHHHHHHHHHHcCCEEEEEeCC--HH-HHHHHHHhCCceEE
Confidence 368899999997553 111 1223347788999999999877654 33 57888999988766
No 251
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=72.39 E-value=9.1 Score=29.26 Aligned_cols=41 Identities=5% Similarity=-0.083 Sum_probs=31.3
Q ss_pred CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+++.+.-++. .+++++++++|-||.|.+.....+|.-+.|
T Consensus 158 ~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav 200 (236)
T TIGR02471 158 ASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV 200 (236)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE
Confidence 55665566665 556678999999999999999988855443
No 252
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=72.15 E-value=6.8 Score=36.61 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=39.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
-+..||+.+.++.++..|+.+-.+||..... ++.+..++|+..
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T-AkAIA~eCGILt 688 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINT-AKAIARECGILT 688 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH-HHHHHHHccccc
Confidence 3789999999999999999999999999988 899999999854
No 253
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=71.81 E-value=2.3 Score=32.99 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=26.0
Q ss_pred hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 110 FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 110 ~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
.+++++++++|.||.|++.....||+.+.+
T Consensus 200 ~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~ 229 (256)
T TIGR00099 200 LGISLEDVIAFGDGMNDIEMLEAAGYGVAM 229 (256)
T ss_pred cCCCHHHEEEeCCcHHhHHHHHhCCceeEe
Confidence 456779999999999999999999986554
No 254
>PLN03190 aminophospholipid translocase; Provisional
Probab=71.07 E-value=7.6 Score=37.47 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=37.2
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.+++.+.++.|++.|+++.++||-.... +..+....++-
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~t-Ai~IA~s~~Ll 766 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQET-AISIGYSSKLL 766 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCC
Confidence 688999999999999999999999998888 78888888874
No 255
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=69.74 E-value=12 Score=27.24 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=27.9
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
..+.+.++++.+++.|+++.+-||...+++.+.+++.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 4467889999999999999999997664423444444
No 256
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=69.43 E-value=20 Score=22.90 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=40.6
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
++.+++|+.++=.= +. ....-..++.++++++|..+.++.-+ +. +...++..|+.+.|.
T Consensus 38 ~~~viid~~~v~~i-------Ds---~g~~~L~~l~~~~~~~g~~v~i~~~~--~~-~~~~l~~~gl~~~~~ 96 (99)
T cd07043 38 PRRLVLDLSGVTFI-------DS---SGLGVLLGAYKRARAAGGRLVLVNVS--PA-VRRVLELTGLDRLFP 96 (99)
T ss_pred CCEEEEECCCCCEE-------cc---hhHHHHHHHHHHHHHcCCeEEEEcCC--HH-HHHHHHHhCcceeee
Confidence 57899999986442 11 12234457888899999887766543 35 588999999877654
No 257
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=68.73 E-value=50 Score=26.71 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=48.8
Q ss_pred HHHHHHHHHHC-Cc-eEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH---------hhCCCcceEEEe
Q 032013 53 AKGILEALKEK-GI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL---------FFFSISAFILFV 121 (149)
Q Consensus 53 ~~e~L~~Lk~~-Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~---------~~~~~~~~l~~e 121 (149)
...+++.|++. ++ ...++||..... ...+++.+++..-+.......+..++.-... ...+|+--++.-
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~g 94 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQG 94 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34678888876 33 357788888766 7888888998643321111122222221111 234554445555
Q ss_pred ehH---hHHHHHHHhCCchh
Q 032013 122 DLF---CFMYAAAYVGCDLY 138 (149)
Q Consensus 122 Ds~---~gi~aa~~ag~~~~ 138 (149)
|.. .|..||+..|++++
T Consensus 95 d~~~~la~a~aa~~~~ipv~ 114 (365)
T TIGR00236 95 DTTTTLAGALAAFYLQIPVG 114 (365)
T ss_pred CchHHHHHHHHHHHhCCCEE
Confidence 744 46677777799876
No 258
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=67.96 E-value=29 Score=26.39 Aligned_cols=77 Identities=16% Similarity=0.096 Sum_probs=46.2
Q ss_pred cCcc-HHHHHHHHHHCCceEEEEeCCC----chHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeeh
Q 032013 49 LYPH-AKGILEALKEKGIHVAVASRSP----APDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDL 123 (149)
Q Consensus 49 ~~pg-~~e~L~~Lk~~Gi~i~IaT~~~----~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs 123 (149)
+.++ ..++++.+++.|+++.+.||+. .+. +...++..+ .. .+.....+| ..|.+.. +. -++..
T Consensus 78 l~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~-~~~ll~~~d--~v--~isl~~~~~--~~~~~~~-g~----~~~~v 145 (235)
T TIGR02493 78 LQPEFLSELFKACKELGIHTCLDTSGFLGGCTEA-ADELLEYTD--LV--LLDIKHFNP--EKYKKLT-GV----SLQPT 145 (235)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHH-HHHHHHhCC--EE--EEeCCCCCH--HHHHHHH-CC----CcHHH
Confidence 4566 4599999999999999999994 233 455555322 11 112223444 4454422 11 25666
Q ss_pred HhHHHHHHHhCCch
Q 032013 124 FCFMYAAAYVGCDL 137 (149)
Q Consensus 124 ~~gi~aa~~ag~~~ 137 (149)
..++...+..|.++
T Consensus 146 ~~~i~~l~~~g~~~ 159 (235)
T TIGR02493 146 LDFAKYLAKRNKPI 159 (235)
T ss_pred HHHHHHHHhCCCcE
Confidence 77777777777764
No 259
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=67.86 E-value=26 Score=27.55 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHH
Q 032013 53 AKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 53 ~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~ 128 (149)
+.+++..|+++ ++++.++-+++.....+...+..++.+.+... +. .+.+..+|.. ..+-|+. .|-.+.-+.
T Consensus 210 li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~adi~v~ps~---~E~~~~~~l 284 (358)
T cd03812 210 LIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFL-GV-RNDVPELLQAMDVFLFPSL---YEGLPLVLI 284 (358)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEe-cc-cCCHHHHHHhcCEEEeccc---ccCCCHHHH
Confidence 45667777664 67788776655433246666777776543322 22 3444555554 3344433 477889999
Q ss_pred HHHHhCCchhhhh
Q 032013 129 AAAYVGCDLYVYK 141 (149)
Q Consensus 129 aa~~ag~~~~~~~ 141 (149)
-|.++|+++|+..
T Consensus 285 EAma~G~PvI~s~ 297 (358)
T cd03812 285 EAQASGLPCILSD 297 (358)
T ss_pred HHHHhCCCEEEEc
Confidence 9999999998753
No 260
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=67.44 E-value=11 Score=25.68 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.+.++.++++|.+++.+|+++...
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3678899999999999999999987665
No 261
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=66.76 E-value=7.9 Score=29.97 Aligned_cols=44 Identities=9% Similarity=-0.143 Sum_probs=32.9
Q ss_pred ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 97 RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
...++..+.-++. .+++++++++|=|+.|.+...+.+|...++.
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~ 209 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIV 209 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEE
Confidence 3456666666665 4567799999999999999999876555543
No 262
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=66.13 E-value=4.5 Score=27.34 Aligned_cols=60 Identities=15% Similarity=0.337 Sum_probs=43.2
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
.++.+++|+.++-.= + ..-..-..++.+.++.+|.++.++.-+ .. +...++..|+...+.
T Consensus 47 ~~~~vIlD~s~v~~i-------D---ssgi~~L~~~~~~~~~~g~~~~l~~~~--~~-v~~~l~~~~~~~~~~ 106 (117)
T PF01740_consen 47 TIKNVILDMSGVSFI-------D---SSGIQALVDIIKELRRRGVQLVLVGLN--PD-VRRILERSGLIDFIP 106 (117)
T ss_dssp SSSEEEEEETTESEE-------S---HHHHHHHHHHHHHHHHTTCEEEEESHH--HH-HHHHHHHTTGHHHSC
T ss_pred cceEEEEEEEeCCcC-------C---HHHHHHHHHHHHHHHHCCCEEEEEECC--HH-HHHHHHHcCCChhcC
Confidence 368999999998442 1 122335568889999999999987654 34 577899999876664
No 263
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=65.78 E-value=8.4 Score=28.57 Aligned_cols=40 Identities=10% Similarity=-0.187 Sum_probs=30.7
Q ss_pred CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
.+++.+.-++. .+.+++++++|-|+.|++..+..+|..+.
T Consensus 162 ~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 162 VDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 55555555555 44556899999999999999999998764
No 264
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=65.21 E-value=13 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 56 ~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
+-+.+-+.|++++|++++.... ....++.-..-.+|..
T Consensus 222 AA~iA~~aG~~~iI~~g~~~~~-i~~~~~~~~~GT~F~~ 259 (369)
T COG0263 222 AAKIATRAGVPVIIASGSKPDV-ILDALEGEAVGTLFEP 259 (369)
T ss_pred HHHHHHHcCCcEEEecCCCcch-HHHHHhCCCCccEEec
Confidence 3445567899999999998876 5777776666666753
No 265
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=64.38 E-value=11 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=25.3
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34688899999999999999999987666
No 266
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=63.44 E-value=4.6 Score=31.33 Aligned_cols=26 Identities=27% Similarity=0.177 Sum_probs=22.1
Q ss_pred cceEEEeehHhHHHHHHHhCCchhhh
Q 032013 115 SAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 115 ~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
..+-+++|...-++.-++.|.++.||
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~ 117 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVY 117 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEE
Confidence 45668899999999999999988887
No 267
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=63.26 E-value=17 Score=25.65 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=50.5
Q ss_pred ccHHHHHHHHH---HCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHh
Q 032013 51 PHAKGILEALK---EKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFC 125 (149)
Q Consensus 51 pg~~e~L~~Lk---~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~ 125 (149)
..+.+++..+. ...+.+.++.+...........+..++...+........+-...+|.. ..+.|+.. |-.+.
T Consensus 31 ~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~---e~~~~ 107 (172)
T PF00534_consen 31 DLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSRN---EGFGL 107 (172)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BSS---BSS-H
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccceeccccccc---ccccc
Confidence 45556666665 567888877744433214666777787665444322222333344444 22444333 77788
Q ss_pred HHHHHHHhCCchhhhh
Q 032013 126 FMYAAAYVGCDLYVYK 141 (149)
Q Consensus 126 gi~aa~~ag~~~~~~~ 141 (149)
-+.-|.++|+++|+..
T Consensus 108 ~~~Ea~~~g~pvI~~~ 123 (172)
T PF00534_consen 108 SLLEAMACGCPVIASD 123 (172)
T ss_dssp HHHHHHHTT-EEEEES
T ss_pred ccccccccccceeecc
Confidence 8899999999998754
No 268
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=63.08 E-value=17 Score=25.76 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=35.5
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
.++|=+||+-+=.... .+.-..+.+|...++++.++++|+++.+++-+.
T Consensus 37 ~iF~t~dG~~l~~K~~--~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 37 TIFFTMDGVTLVKKKV--AEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred EEEEEeccceeeeecc--hhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 4888999986642111 112223566899999999999999999998654
No 269
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=62.98 E-value=7.5 Score=29.96 Aligned_cols=27 Identities=11% Similarity=-0.166 Sum_probs=24.4
Q ss_pred CCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 113 SISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 113 ~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+.++++.|-|+.|++.....||+.++|
T Consensus 198 ~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 198 GAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred CcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 557899999999999999999998765
No 270
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=62.89 E-value=6.5 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
.|+.+.|++.|++.+-+|.+.+.. .+..|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~v-y~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKL-YEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHH-HHHHHHHH
Confidence 578899999999999999999887 56666543
No 271
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=62.28 E-value=29 Score=26.44 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHH
Q 032013 53 AKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 53 ~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~ 128 (149)
+.++++.+.++ ++++.++.+.+.........+..+....+........+-...++.. ..+.|... |=.+.-+.
T Consensus 217 ~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~---~~~~~~~~ 293 (374)
T cd03801 217 LLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLY---EGFGLVLL 293 (374)
T ss_pred HHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchh---ccccchHH
Confidence 34555555554 5777777655443323444445565543332222222333344443 22333222 44566688
Q ss_pred HHHHhCCchhhhh
Q 032013 129 AAAYVGCDLYVYK 141 (149)
Q Consensus 129 aa~~ag~~~~~~~ 141 (149)
-|.++|+++|+..
T Consensus 294 Ea~~~g~pvI~~~ 306 (374)
T cd03801 294 EAMAAGLPVVASD 306 (374)
T ss_pred HHHHcCCcEEEeC
Confidence 8999999998765
No 272
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=62.16 E-value=7.5 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRS 73 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~ 73 (149)
++..+.|++.+++++|-+. +.+.|+|..
T Consensus 65 RnL~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 65 RNLGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred hhcCccccHHHHHHHHHhh-heEEEEEec
Confidence 3466889999999999987 899999976
No 273
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=62.13 E-value=42 Score=21.97 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
.++.+++|+.+.=.= ++ .-..-..++.++++++|..+.++.-+ +. ....++..|+...|.
T Consensus 42 ~~~~vvidls~v~~i-----Ds-----sgl~~L~~~~~~~~~~~~~~~l~~~~--~~-~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 42 GPRPIVLDLEDLEFM-----DS-----SGLGVLLGRYKQVRRVGGQLVLVSVS--PR-VARLLDITGLLRIIP 101 (108)
T ss_pred CCCeEEEECCCCeEE-----cc-----ccHHHHHHHHHHHHhcCCEEEEEeCC--HH-HHHHHHHhChhheec
Confidence 578899999987542 11 12233447778889999988776653 33 578889999877554
No 274
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=60.99 E-value=39 Score=25.92 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc-cccc---CCChhHHHHHHhhC-CCcceEEEe---e
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-MVRL---SCCIMCIIFFLFFF-SISAFILFV---D 122 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~-~~~~---~p~p~~~i~~~~~~-~~~~~l~~e---D 122 (149)
....++++++|+++ .+..+==++.++ . .....+|.+ ++.. ..+| .+...|++-+-..+ .....++-| .
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee-~-~~A~~~G~D-~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~ 154 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEE-A-INAAELGFD-IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH 154 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHH-H-HHHHHTT-S-EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHH-H-HHHHHcCCC-EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC
Confidence 57789999999998 777777776666 3 344567743 1211 1222 22244466554221 223448888 8
Q ss_pred hHhHHHHHHHhCCchhhhhh
Q 032013 123 LFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 123 s~~gi~aa~~ag~~~~~~~~ 142 (149)
+|--...|..+|++.+|+.-
T Consensus 155 tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE-H
T ss_pred CHHHHHHHHhcCCeEEEECc
Confidence 89999999999999999754
No 275
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=59.66 E-value=18 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.7
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.+.++.++++|.+++.+|+.+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 4688899999999999999999987665
No 276
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=59.15 E-value=27 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG 87 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g 87 (149)
.+-++.+..++.|+++.|+||++. +...+++..
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~---ar~~ik~~~ 106 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTL---ARKIIKEYR 106 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHH---HHHHHHHhC
Confidence 455788888999999999999864 455665543
No 277
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.10 E-value=25 Score=24.27 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHCCc-e-EEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 51 PHAKGILEALKEKGI-H-VAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi-~-i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
+.+.++++.|++.|. . ..++-|+.... ....+++.|++.+|..
T Consensus 65 ~~~~~~~~~L~~~~~~~i~i~~GG~~~~~-~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 65 TLFPEVIELLRELGAGDILVVGGGIIPPE-DYELLKEMGVAEIFGP 109 (122)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHCCCCEEECC
Confidence 456777888888744 2 23344444444 3566777887766543
No 278
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.40 E-value=22 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
....+.++.++++|.+++.+|+++...
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 677899999999999999999887665
No 279
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=58.35 E-value=58 Score=25.86 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=49.1
Q ss_pred ccCccHHHHHHHHHHCCc-eEEEEeCCCch-HHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHh
Q 032013 48 YLYPHAKGILEALKEKGI-HVAVASRSPAP-DIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFC 125 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~-~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~ 125 (149)
.+.++..++++.+++.|+ .+.+.||+..- . ....+...|+...-. ..-..+| ..|-... + .-.+++...
T Consensus 68 ll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~-~~~~l~~~g~~~v~i--Sld~~~~--~~~~~i~-~---~~~~~~vl~ 138 (302)
T TIGR02668 68 LLRKDLIEIIRRIKDYGIKDVSMTTNGILLEK-LAKKLKEAGLDRVNV--SLDTLDP--EKYKKIT-G---RGALDRVIE 138 (302)
T ss_pred ccccCHHHHHHHHHhCCCceEEEEcCchHHHH-HHHHHHHCCCCEEEE--EecCCCH--HHhhhcc-C---CCcHHHHHH
Confidence 356778899999999998 89999988542 2 233455556543211 1223344 4454322 1 124667778
Q ss_pred HHHHHHHhCCc
Q 032013 126 FMYAAAYVGCD 136 (149)
Q Consensus 126 gi~aa~~ag~~ 136 (149)
+|..+.++|+.
T Consensus 139 ~i~~~~~~G~~ 149 (302)
T TIGR02668 139 GIESAVDAGLT 149 (302)
T ss_pred HHHHHHHcCCC
Confidence 88888888865
No 280
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=58.31 E-value=52 Score=26.93 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHCCceEEEEeCCCchHHHHHHHHH-cC-CCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013 57 LEALKEKGIHVAVASRSPAPDIAKTFLHK-LG-IHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG 134 (149)
Q Consensus 57 L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~g-l~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag 134 (149)
.+.|.+.|.++.+-+|+..+..++..++. +. ....+...+-..+.|-.++..+ .+--|+=+||.|=-.-|.+.|
T Consensus 190 ~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~----Adyii~TaDSinM~sEAasTg 265 (329)
T COG3660 190 VKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAA----ADYIISTADSINMCSEAASTG 265 (329)
T ss_pred HHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhh----cceEEEecchhhhhHHHhccC
Confidence 45667789999888877655436777765 32 2222222232345562233322 234467779999999999999
Q ss_pred Cchhhhh
Q 032013 135 CDLYVYK 141 (149)
Q Consensus 135 ~~~~~~~ 141 (149)
-++++.+
T Consensus 266 kPv~~~~ 272 (329)
T COG3660 266 KPVFILE 272 (329)
T ss_pred CCeEEEe
Confidence 9998753
No 281
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=58.14 E-value=46 Score=25.24 Aligned_cols=84 Identities=10% Similarity=0.107 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEeehHhHH
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFVDLFCFM 127 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi 127 (149)
.+.++++.+.++ .+++.++.+++...-....++..++...+.. .+..++ ...++... .+.|+. .|-.+.-+
T Consensus 206 ~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~-~g~~~~-~~~~~~~~d~~i~ps~---~e~~~~~~ 280 (353)
T cd03811 206 TLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHF-LGFQSN-PYPYLKAADLFVLSSR---YEGFPNVL 280 (353)
T ss_pred HHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEE-ecccCC-HHHHHHhCCEEEeCcc---cCCCCcHH
Confidence 445666777664 6788877665543324566777776553322 222222 23333332 223322 26667888
Q ss_pred HHHHHhCCchhhh
Q 032013 128 YAAAYVGCDLYVY 140 (149)
Q Consensus 128 ~aa~~ag~~~~~~ 140 (149)
.-|.++|+++++.
T Consensus 281 ~Ea~~~G~PvI~~ 293 (353)
T cd03811 281 LEAMALGTPVVAT 293 (353)
T ss_pred HHHHHhCCCEEEc
Confidence 9999999999875
No 282
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=57.89 E-value=59 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
.+.++++|+++|+.+.|.+ +.... +..+++..|++...
T Consensus 16 Fk~~I~eL~~~GheV~it~-R~~~~-~~~LL~~yg~~y~~ 53 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITA-RDKDE-TEELLDLYGIDYIV 53 (335)
T ss_pred HHHHHHHHHhCCCEEEEEE-eccch-HHHHHHHcCCCeEE
Confidence 3578999999999987554 55566 68999999986543
No 283
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=57.62 E-value=33 Score=22.72 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=39.7
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
.++.+++|+-|+-+= ++ .-..-..++.++++.+|.++.++--+ +. +...++..|+..
T Consensus 40 ~~~~vvlDls~v~~i-----Ds-----sg~~~l~~~~~~~~~~g~~l~l~g~~--~~-v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVI-----DS-----AVARHLLRLARALRLLGARTILTGIR--PE-VAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchh-----cH-----HHHHHHHHHHHHHHHcCCeEEEEeCC--HH-HHHHHHHhCCCh
Confidence 467899999887553 11 12223446788889999999887655 33 578889999865
No 284
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=56.78 E-value=51 Score=25.70 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh-hHHHHHHhhCCCcceEEE-----ee
Q 032013 51 PHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI-MCIIFFLFFFSISAFILF-----VD 122 (149)
Q Consensus 51 pg~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p-~~~i~~~~~~~~~~~l~~-----eD 122 (149)
+.+.++++.+.++ ++.+.++-+.+........++..++...+.. .+..|.. +..+|....+-...+... |=
T Consensus 195 ~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~ 273 (355)
T cd03799 195 DYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTL-LGAKSQEEVRELLRAADLFVLPSVTAADGDREG 273 (355)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEE-CCcCChHHHHHHHHhCCEEEecceecCCCCccC
Confidence 3445666666664 6777776655443214666677766543222 2233322 223333322111111111 43
Q ss_pred hHhHHHHHHHhCCchhhh
Q 032013 123 LFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 123 s~~gi~aa~~ag~~~~~~ 140 (149)
.+.=+..|.++|+++++.
T Consensus 274 ~~~~~~Ea~a~G~Pvi~~ 291 (355)
T cd03799 274 LPVVLMEAMAMGLPVIST 291 (355)
T ss_pred ccHHHHHHHHcCCCEEec
Confidence 466788899999999874
No 285
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=56.23 E-value=20 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.2
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34678899999999999999999988766
No 286
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=55.58 E-value=44 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCc--hHHHHHHHHHcCCCC
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPA--PDIAKTFLHKLGIHS 90 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~--~~i~~~~l~~~gl~~ 90 (149)
...++++.+++. ++++.+.||... .. ....+...|...
T Consensus 60 ~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~-~~~~l~~~g~~~ 101 (204)
T cd01335 60 ELAELLRRLKKELPGFEISIETNGTLLTEE-LLKELKELGLDG 101 (204)
T ss_pred hHHHHHHHHHhhCCCceEEEEcCcccCCHH-HHHHHHhCCCce
Confidence 778999999998 999999998875 44 345555555443
No 287
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.42 E-value=44 Score=28.59 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=60.4
Q ss_pred HHHhHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeC-CCchHHHHHH
Q 032013 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR-SPAPDIAKTF 82 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~-~~~~~i~~~~ 82 (149)
.+++.++....... ...++.++| .|+|+... .+.+.++++.+++.|+.+..-+. .-..+ ....
T Consensus 229 ~e~V~~Ei~~~~~~-~~~~~~i~f-~Dd~f~~~-------------~~~~~~l~~~l~~~~i~~~~~~~~~~~~e-~l~~ 292 (472)
T TIGR03471 229 AESVIEEVKYALEN-FPEVREFFF-DDDTFTDD-------------KPRAEEIARKLGPLGVTWSCNARANVDYE-TLKV 292 (472)
T ss_pred HHHHHHHHHHHHHh-cCCCcEEEE-eCCCCCCC-------------HHHHHHHHHHHhhcCceEEEEecCCCCHH-HHHH
Confidence 35555554333222 123566777 47777641 14567888888888887765442 22344 4567
Q ss_pred HHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 83 LHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 83 l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
+++.|....+...+ +.++ .+.-..+-+ .-.|+....++.++++|+.+.
T Consensus 293 l~~aG~~~v~iGiE--S~s~--~~L~~~~K~----~~~~~~~~~i~~~~~~Gi~v~ 340 (472)
T TIGR03471 293 MKENGLRLLLVGYE--SGDQ--QILKNIKKG----LTVEIARRFTRDCHKLGIKVH 340 (472)
T ss_pred HHHcCCCEEEEcCC--CCCH--HHHHHhcCC----CCHHHHHHHHHHHHHCCCeEE
Confidence 77778764433332 3333 333222211 234566667777777776643
No 288
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=55.29 E-value=63 Score=27.01 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=46.9
Q ss_pred ccCccHHHHHHHHHHC-Cce-EEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehH
Q 032013 48 YLYPHAKGILEALKEK-GIH-VAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLF 124 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~-Gi~-i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~ 124 (149)
.+.++..++++.+++. |+. +.+.||+.. .. ....+...|+...-.... ..+| ..|-...-. .. ++...
T Consensus 118 llr~dl~eli~~l~~~~gi~~i~itTNG~lL~~-~~~~L~~aGld~VnISLD--sl~~--e~~~~itr~-~~---~~~vl 188 (373)
T PLN02951 118 TLRKDIEDICLQLSSLKGLKTLAMTTNGITLSR-KLPRLKEAGLTSLNISLD--TLVP--AKFEFLTRR-KG---HDRVL 188 (373)
T ss_pred cchhhHHHHHHHHHhcCCCceEEEeeCcchHHH-HHHHHHhCCCCeEEEeec--cCCH--HHHHHHhcC-CC---HHHHH
Confidence 4567788888888886 775 777887753 22 123444556543221212 3344 555543211 11 37788
Q ss_pred hHHHHHHHhCCc
Q 032013 125 CFMYAAAYVGCD 136 (149)
Q Consensus 125 ~gi~aa~~ag~~ 136 (149)
.+|.+|.++|..
T Consensus 189 ~~I~~a~~~G~~ 200 (373)
T PLN02951 189 ESIDTAIELGYN 200 (373)
T ss_pred HHHHHHHHcCCC
Confidence 899999999974
No 289
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=54.39 E-value=15 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.++..++++++++.|+++.+-||+....
T Consensus 84 ll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 84 ALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred hhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 355788999999999999999999998654
No 290
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=54.04 E-value=44 Score=29.38 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred ccEEEEecCCccc-cccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013 22 PRLVVFDLDYTLW-PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR 97 (149)
Q Consensus 22 ~k~vifDlDGTLl-d~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~ 97 (149)
.+.+++|+.++-. | . .-..-..++.++++++|+++.++.-+ +. +++.++..|+.+.+...+.
T Consensus 494 ~~~vIlD~~~V~~iD------s-----Sg~~~L~~l~~~l~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~~~~~~ 556 (563)
T TIGR00815 494 LQVVILDMSAVPHLD------T-----SGIHALEELRKELKARGIQLLLANPN--KA-VRSTLKRGGLVELIGEEHF 556 (563)
T ss_pred ceEEEEECCCCCcch------H-----HHHHHHHHHHHHHHHcCCEEEEecCC--hH-HHHHHHHCCchhhcCCcce
Confidence 5889999988533 3 1 22345568889999999999877654 34 5788999998776654333
No 291
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=53.56 E-value=30 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=32.4
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..+...++.++++++|+.++.+|..+... .....+..++.
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~~~~-~~~~~~~~~~~ 83 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDDPEE-IKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSSHHH-HHHHHHHHTCS
T ss_pred chhHHHHHhhhhccceEEeeecccccccc-hhhhhhhhccc
Confidence 34566677888888899999999988888 68888888854
No 292
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=53.33 E-value=55 Score=25.03 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC-hhHHHHHHh--hCCCcceEEEeehHhH
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC-IMCIIFFLF--FFSISAFILFVDLFCF 126 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~-p~~~i~~~~--~~~~~~~l~~eDs~~g 126 (149)
...++++.+.++ ++++.++.+.+.........+..++...+.. .+.-+. -...++... .+.|... |-.+.-
T Consensus 219 ~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~ad~~i~~~~~---~~~~~~ 294 (377)
T cd03798 219 YLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTF-LGAVPHEEVPAYYAAADVFVLPSLR---EGFGLV 294 (377)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEE-eCCCCHHHHHHHHHhcCeeecchhh---ccCChH
Confidence 344566666654 5777776655433213555565665443322 122222 223344432 2222221 555677
Q ss_pred HHHHHHhCCchhhhh
Q 032013 127 MYAAAYVGCDLYVYK 141 (149)
Q Consensus 127 i~aa~~ag~~~~~~~ 141 (149)
+.-|.++|+++|+..
T Consensus 295 ~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 295 LLEAMACGLPVVATD 309 (377)
T ss_pred HHHHHhcCCCEEEec
Confidence 888999999988743
No 293
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=53.09 E-value=1e+02 Score=24.36 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=51.7
Q ss_pred cCccHHHHHHHHHHCCceEE-EEeC-CCchHHHHHHHHHcC-CCCCccccc---ccC--CChhHHHHHH--hhCCCcceE
Q 032013 49 LYPHAKGILEALKEKGIHVA-VASR-SPAPDIAKTFLHKLG-IHSMFVPMV---RLS--CCIMCIIFFL--FFFSISAFI 118 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~-IaT~-~~~~~i~~~~l~~~g-l~~~f~~~~---~~~--p~p~~~i~~~--~~~~~~~~l 118 (149)
+.+...++++.++++|+..+ +++= ++.++ +..+.+... +- |.-... +.+ -.|...-+++ ... ....+
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~er-i~~i~~~~~gfi-y~vs~~G~TG~~~~~~~~~~~~i~~lr~~-~~~pi 201 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDER-LKQIAEKSQGFV-YLVSRAGVTGARNRAASALNELVKRLKAY-SAKPV 201 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHH-HHHHHHhCCCCE-EEEECCCCCCCcccCChhHHHHHHHHHhh-cCCCE
Confidence 44677899999999998866 5553 33445 466776653 32 222222 222 1222223333 221 12234
Q ss_pred EEe---ehHhHHHHHHHhCCchhhhhh
Q 032013 119 LFV---DLFCFMYAAAYVGCDLYVYKR 142 (149)
Q Consensus 119 ~~e---Ds~~gi~aa~~ag~~~~~~~~ 142 (149)
..+ .++.-+..+..+|++.+|...
T Consensus 202 ~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 202 LVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 444 567888888999999877543
No 294
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=52.94 E-value=36 Score=26.96 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh-hHHHHHHhh--CCCcceE---EEee
Q 032013 51 PHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI-MCIIFFLFF--FSISAFI---LFVD 122 (149)
Q Consensus 51 pg~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p-~~~i~~~~~--~~~~~~l---~~eD 122 (149)
+.+.++++.++++ ++++.++-+++.....+...+.+|+...+.. .+..|.. ...+|.... +-|+..- -.|=
T Consensus 204 ~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~ 282 (367)
T cd05844 204 LLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTF-LGAQPHAEVRELMRRARIFLQPSVTAPSGDAEG 282 (367)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEE-CCCCCHHHHHHHHHhCCEEEECcccCCCCCccC
Confidence 3445666666554 6777777655433214666677776554432 2222322 223333211 1111100 0244
Q ss_pred hHhHHHHHHHhCCchhhhh
Q 032013 123 LFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 123 s~~gi~aa~~ag~~~~~~~ 141 (149)
.++-+.-|.++|+++++..
T Consensus 283 ~~~~~~EA~a~G~PvI~s~ 301 (367)
T cd05844 283 LPVVLLEAQASGVPVVATR 301 (367)
T ss_pred CchHHHHHHHcCCCEEEeC
Confidence 5778999999999998754
No 295
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=52.74 E-value=25 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
+...+.++.++++|.+++++|++....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 567889999999999999999987665
No 296
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=52.41 E-value=23 Score=30.37 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh-------h---CCCc-ce
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF-------F---FSIS-AF 117 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~-------~---~~~~-~~ 117 (149)
.+.+.++.++++ |++++|.||+.. .. ....+...|++..... ....+| .++-++ + .+.+ ..
T Consensus 96 ~~~~~l~~~~~~~~~i~i~lsTNG~~l~e-~i~~L~~~gvd~V~is--lka~d~--e~~~~Iy~~v~~~g~~~tG~~~~~ 170 (442)
T TIGR01290 96 KTFQTLELVARQLPDVKLCLSTNGLMLPE-HVDRLVDLGVGHVTIT--INAIDP--AVGEKIYPWVWYEGERYTGREAAD 170 (442)
T ss_pred ccHHHHHHHHHhcCCCeEEEECCCCCCHH-HHHHHHHCCCCeEEEe--ccCCCH--HHHhhcchhhccccccccCcchHH
Confidence 467889999887 899999999963 33 2334445566532222 333444 444321 1 2222 23
Q ss_pred EEEeehHhHHHHHHHhCCchhh
Q 032013 118 ILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 118 l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+.||....|+....++|+.+.|
T Consensus 171 il~e~~l~~l~~l~~~G~~v~v 192 (442)
T TIGR01290 171 LLIERQLEGLEKLTERGILVKV 192 (442)
T ss_pred HHHHHHHHHHHHHHhCCCeEEE
Confidence 5678888888888888877433
No 297
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=52.06 E-value=61 Score=20.75 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
+.+++.|++-.=. ...++++++++. +.+++++|+..... .....-+.|..+|+.
T Consensus 44 ~d~iiid~~~~~~-----------------~~~~~~~~i~~~~~~~~ii~~t~~~~~~-~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 44 PDLIIIDLELPDG-----------------DGLELLEQIRQINPSIPIIVVTDEDDSD-EVQEALRAGADDYLS 99 (112)
T ss_dssp ESEEEEESSSSSS-----------------BHHHHHHHHHHHTTTSEEEEEESSTSHH-HHHHHHHTTESEEEE
T ss_pred ceEEEEEeeeccc-----------------cccccccccccccccccEEEecCCCCHH-HHHHHHHCCCCEEEE
Confidence 7888888432211 334677777664 59999999887755 344444778766543
No 298
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=51.63 E-value=22 Score=24.30 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=26.8
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.+.+.+.++.++++|.+++.+|+.. . .....++.+.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~--~-l~~~~~~~~~ 91 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG--K-LLEMAREHGV 91 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc--h-HHHHHHHcCC
Confidence 3678899999999999999999754 3 2445554453
No 299
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=51.40 E-value=21 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.8
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34788899999999999999999887655
No 300
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=51.00 E-value=85 Score=25.91 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHCCceEEEE-eCC-Cc-hHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcce-EEEeehHhH
Q 032013 51 PHAKGILEALKEKGIHVAVA-SRS-PA-PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAF-ILFVDLFCF 126 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~Ia-T~~-~~-~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~-l~~eDs~~g 126 (149)
+...++++.|++.+.++.++ .+. +. .. +...++.+. .. ...+....|-+-.++.... ..| +++.||-.|
T Consensus 220 ~~l~~li~~L~~~~~~~~vi~P~~~p~~~~-i~~~i~~~~-~~-~~~v~l~~~l~~~~~l~Ll----~~a~~vitdSSgg 292 (365)
T TIGR03568 220 EQIKELLKALDELNKNYIFTYPNADAGSRI-INEAIEEYV-NE-HPNFRLFKSLGQERYLSLL----KNADAVIGNSSSG 292 (365)
T ss_pred HHHHHHHHHHHHhccCCEEEEeCCCCCchH-HHHHHHHHh-cC-CCCEEEECCCChHHHHHHH----HhCCEEEEcChhH
Confidence 45667788887776554333 232 22 22 233344431 11 2223444544422222222 133 788999999
Q ss_pred HHHHHHhCCchhhhh
Q 032013 127 MYAAAYVGCDLYVYK 141 (149)
Q Consensus 127 i~aa~~ag~~~~~~~ 141 (149)
|.-|.+.|.+++...
T Consensus 293 i~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 293 IIEAPSFGVPTINIG 307 (365)
T ss_pred HHhhhhcCCCEEeec
Confidence 999999999998753
No 301
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=50.85 E-value=60 Score=21.78 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=37.5
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCC
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSI 114 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~ 114 (149)
+....+++.|+++++++-.+.+. ++.+.+..+++ .... .+|.-.+|-+.++.-
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p----~~ly--~D~~~~lY~~lg~~~ 56 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFP----FPLY--VDPERKLYKALGLKR 56 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCC----CcEE--EeCcHHHHHHhCCcc
Confidence 45678889999999999888766 67877765543 2222 444558888877664
No 302
>PLN02389 biotin synthase
Probab=50.70 E-value=27 Score=29.44 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=50.9
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~ 128 (149)
.++.+.++++.+++.+..+++..|-...+ ....|+..|++.|-. ...++| ..|-... +. --+||-..-++
T Consensus 151 ~~e~i~eiir~ik~~~l~i~~s~G~l~~E-~l~~LkeAGld~~~~---~LeTs~--~~y~~i~-~~---~s~e~rl~ti~ 220 (379)
T PLN02389 151 NFNQILEYVKEIRGMGMEVCCTLGMLEKE-QAAQLKEAGLTAYNH---NLDTSR--EYYPNVI-TT---RSYDDRLETLE 220 (379)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCCHH-HHHHHHHcCCCEEEe---eecCCh--HHhCCcC-CC---CCHHHHHHHHH
Confidence 35677888999988887765333333445 567788888876532 233334 4443222 11 26888889999
Q ss_pred HHHHhCCch
Q 032013 129 AAAYVGCDL 137 (149)
Q Consensus 129 aa~~ag~~~ 137 (149)
.|+++|+++
T Consensus 221 ~a~~~Gi~v 229 (379)
T PLN02389 221 AVREAGISV 229 (379)
T ss_pred HHHHcCCeE
Confidence 999999876
No 303
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=50.65 E-value=15 Score=31.35 Aligned_cols=40 Identities=28% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCCccEEEEecCCccccccccccccCCCCccCccHHHH--HHHHHHCCce
Q 032013 18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGI--LEALKEKGIH 66 (149)
Q Consensus 18 ~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~--L~~Lk~~Gi~ 66 (149)
....+.++.||||+||.. -+.+..+...-- ...+++.|++
T Consensus 23 ~l~~i~~~GfdmDyTL~~---------Y~~~~~esLay~~~~~~l~~~Gyp 64 (424)
T KOG2469|consen 23 NLENIGIVGFDMDYTLAR---------YNLPEMESLAYDLAQFLLKDKGYP 64 (424)
T ss_pred hhhcCcEEeeccccchhh---------hcccchHHHHHHHHHHHHHhcCCh
No 304
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=50.22 E-value=29 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.9
Q ss_pred ccCcc-HHHHHHHHHHCCceEEEEeCCCch
Q 032013 48 YLYPH-AKGILEALKEKGIHVAVASRSPAP 76 (149)
Q Consensus 48 ~~~pg-~~e~L~~Lk~~Gi~i~IaT~~~~~ 76 (149)
.+.++ +.++++.+++.|+.+++-||+...
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 34555 579999999999999999999553
No 305
>PRK13937 phosphoheptose isomerase; Provisional
Probab=50.05 E-value=28 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 4778889999999999999999877665
No 306
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=50.02 E-value=35 Score=29.04 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=64.7
Q ss_pred CCCccEEEEecCCcccccccccc-----------c---cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECC-----------Y---EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~-----------~---~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
....++.+.|+|-||........ + ..-.+.-.|++.+++..+.+- +++.+.|++.... +..+++
T Consensus 209 ~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y-~~~v~d 286 (390)
T COG5190 209 TSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKI-HELVYFTASVKRY-ADPVLD 286 (390)
T ss_pred CCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhh-EEEEEEecchhhh-cchHHH
Confidence 34467888999999997522210 0 000123457888888887776 8999999998877 788888
Q ss_pred HcCCCCCcccc--cccCCChhHHHHHH----hhCCCcceEEEeehHh
Q 032013 85 KLGIHSMFVPM--VRLSCCIMCIIFFL----FFFSISAFILFVDLFC 125 (149)
Q Consensus 85 ~~gl~~~f~~~--~~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~ 125 (149)
.++-...|... ...+-.+.+- |++ .+-+....+.++.+++
T Consensus 287 ~l~~~k~~~~~lfr~sc~~~~G~-~ikDis~i~r~l~~viiId~~p~ 332 (390)
T COG5190 287 ILDSDKVFSHRLFRESCVSYLGV-YIKDISKIGRSLDKVIIIDNSPA 332 (390)
T ss_pred hccccceeehhhhcccceeccCc-hhhhHHhhccCCCceEEeeCChh
Confidence 77655544332 1222233334 554 4455567787777765
No 307
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=49.76 E-value=41 Score=31.70 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=49.3
Q ss_pred CCccEEEEecCCcccccccccc--ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 20 NLPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~--~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.-|+.+.||+|---.+.+.... --.---++.+.+.+++..+++.|+++..+|+..... +.++.+..|+
T Consensus 560 ~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiT-AkAiA~~vgI 629 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKSVGI 629 (1019)
T ss_pred cCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccch-hhhhhhheee
Confidence 4578899999877665422110 000011466677789999999999999999999888 8888888885
No 308
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=49.66 E-value=69 Score=26.01 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=30.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
...+.+|+|..=-..+..+.-+. ..+|...+++++|+++|+++++..
T Consensus 40 ~d~i~lD~~~~~~~~~~~f~~d~---~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 40 LDVIVQDWFYWPKQGWGEWKFDP---ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred ccEEEEechhhcCCCceeEEECh---hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 46789998743111111111121 367899999999999999998765
No 309
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=49.43 E-value=24 Score=23.13 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=22.0
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|+++..++.+..... ..+-.++++-|||.++.
T Consensus 22 sL~EL~~K~~~~l~~~-~~~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 22 SLQELISKTLDALVIT-SGLVTLVLEEDGTVVDT 54 (78)
T ss_pred CHHHHHHHHHHHhCCC-CCCcEEEEeCCCCEEcc
Confidence 4677777775543322 22456999999999974
No 310
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=49.34 E-value=83 Score=24.72 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=34.7
Q ss_pred ccEEEEecCCccccccc--cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013 22 PRLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~--~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
...+.+|.|=+--.+.. .++ ..-+|...+++++|+++|+++++.+....
T Consensus 40 ~d~~~lD~~~~~~~~~f~~~~d-----~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 40 LDGFVLDDDYTDGYGDFTFDWD-----AGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred ccEEEECcccccCCceeeeecC-----hhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 46788887754332222 122 13678999999999999999999887654
No 311
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=49.28 E-value=42 Score=25.15 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEe-eh-H
Q 032013 51 PHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFV-DL-F 124 (149)
Q Consensus 51 pg~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~e-Ds-~ 124 (149)
.-+..++++|+++ +.++.+.|+++... +...+.++ + .....+-|-..+..--. ..++|+-++++| |. |
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg~--~~~~~~~~--~--~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWP 108 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTGR--EMARKLLP--D--RVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWP 108 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCHH--HHHHGG-G--G--G-SEEE---SSHHHHHHHHHHH--SEEEEES----H
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCchH--HHHHHhCC--C--CeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCH
Confidence 3556889999887 89999888876553 22222211 1 11123333332222222 447889999999 54 7
Q ss_pred hHHHHHHHhCCchhhh
Q 032013 125 CFMYAAAYVGCDLYVY 140 (149)
Q Consensus 125 ~gi~aa~~ag~~~~~~ 140 (149)
|-+.++++.|+++++.
T Consensus 109 nll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLV 124 (186)
T ss_dssp HHHHH-----S-EEEE
T ss_pred HHHHHHhhcCCCEEEE
Confidence 8888888889999875
No 312
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=49.19 E-value=83 Score=22.23 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=44.6
Q ss_pred cCCCccEEEEecC-CccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 18 FENLPRLVVFDLD-YTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 18 ~~~~~k~vifDlD-GTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
..+.+...+.|++ |=+.+.+...++... .....-..+.+.|+++|+.+.|+++=.+. +...|+..|+.-|
T Consensus 20 Fgrap~F~Ivd~e~g~i~~vev~~np~~~--~~~g~G~~~a~~l~~~gvdvvi~~~iG~~--a~~~l~~~GIkv~ 90 (121)
T COG1433 20 FGRAPYFTIVDVEDGEIKNVEVIENPAAS--AEKGAGIRIAELLVDEGVDVVIASNIGPN--AYNALKAAGIKVY 90 (121)
T ss_pred ccCCceEEEEEecCCcEEEEEEeeccccc--ccCcchHHHHHHHHHcCCCEEEECccCHH--HHHHHHHcCcEEE
Confidence 4455778888888 444443333222111 12222346788899999999998877665 4688999987643
No 313
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=48.73 E-value=27 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.5
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.+.++.++++|.+++.+|+++...
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4678899999999999999999987665
No 314
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=48.56 E-value=44 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=40.5
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
.++.+++|+-++-+= ++ .-..-..++.++++++|.++.++.-+ .. +...++..|+.+.
T Consensus 38 ~~~~vilDls~v~~i-----Ds-----sgl~~L~~l~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~ 95 (100)
T cd06844 38 AGKTIVIDISALEFM-----DS-----SGTGVLLERSRLAEAVGGQFVLTGIS--PA-VRITLTESGLDKG 95 (100)
T ss_pred CCCEEEEECCCCcEE-----cH-----HHHHHHHHHHHHHHHcCCEEEEECCC--HH-HHHHHHHhCchhh
Confidence 368899999887553 11 12234457788999999999877654 34 5788888888663
No 315
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=48.34 E-value=59 Score=26.63 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=31.4
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~ 72 (149)
...+.+|+|-+--...-.|+ ...+|...++++.|+++|+++.+..+
T Consensus 40 ~d~i~lD~~~~~~~~~f~~d-----~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 40 YDVIWLDIEHTDGKRYFTWD-----KKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ceEEEEChHHhCCCCceEeC-----cccCCCHHHHHHHHHHCCCEEEEEec
Confidence 46788898743211111122 13678999999999999999988664
No 316
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=47.98 E-value=28 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
++.++.+.|.+.|+++. +|++. ...|+..|+.
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~gT-----a~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATEGT-----AKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEHHH-----HHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-EChHH-----HHHHHHcCCC
Confidence 46788999999999886 77763 4566788886
No 317
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=47.58 E-value=50 Score=24.00 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=49.3
Q ss_pred HHHHHHHCCceEEEEe-CCCchHHHHHHHHHc-CCCCCcccccccCCChhHHHHHHhhCCCcceEE-----EeehHhHHH
Q 032013 56 ILEALKEKGIHVAVAS-RSPAPDIAKTFLHKL-GIHSMFVPMVRLSCCIMCIIFFLFFFSISAFIL-----FVDLFCFMY 128 (149)
Q Consensus 56 ~L~~Lk~~Gi~i~IaT-~~~~~~i~~~~l~~~-gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~-----~eDs~~gi~ 128 (149)
+++.|++.|++.++.- |+....+ ..-+.+. ++ .++...+-....-|++-|...- +|..|++ +-....||.
T Consensus 3 l~~~L~~~Gi~~vFg~pG~~~~~l-~~al~~~~~i-~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 3 LLERLKQLGVKHVFGVPGDYNLPL-LDAIEENPGL-RWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred HHHHHHHcCCCEEEEeCCccHHHH-HHHHhhcCCc-eEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 5678899999876654 4333332 2222222 22 2222223333344556666655 6777777 557889999
Q ss_pred HHHHhCCchhhh
Q 032013 129 AAAYVGCDLYVY 140 (149)
Q Consensus 129 aa~~ag~~~~~~ 140 (149)
.|+..+.++++.
T Consensus 80 ~A~~~~~Pvl~i 91 (162)
T cd07038 80 GAYAEHVPVVHI 91 (162)
T ss_pred HHHHcCCCEEEE
Confidence 999999998875
No 318
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=46.76 E-value=51 Score=27.50 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHCC--ceEEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCCChh-HHHHHHh--hCCCcceE---EEee
Q 032013 52 HAKGILEALKEKG--IHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSCCIM-CIIFFLF--FFSISAFI---LFVD 122 (149)
Q Consensus 52 g~~e~L~~Lk~~G--i~i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p~p~-~~i~~~~--~~~~~~~l---~~eD 122 (149)
...++++.|++++ +++.++-+++. .. .+...+.+|+.+.+.. .+..|+.. ..+|... .+-|+..- -.|=
T Consensus 239 ~ll~a~~~l~~~~~~~~l~ivG~G~~~~~-l~~~~~~~~l~~~V~~-~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg 316 (406)
T PRK15427 239 VAIEACRQLKEQGVAFRYRILGIGPWERR-LRTLIEQYQLEDVVEM-PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEG 316 (406)
T ss_pred HHHHHHHHHHhhCCCEEEEEEECchhHHH-HHHHHHHcCCCCeEEE-eCCCCHHHHHHHHHhCCEEEECCccCCCCCccC
Confidence 3446666666653 66777765553 44 5777888888654332 34444442 2333332 12221100 0244
Q ss_pred hHhHHHHHHHhCCchhhh
Q 032013 123 LFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 123 s~~gi~aa~~ag~~~~~~ 140 (149)
.++=+.-|.++|+++|+.
T Consensus 317 ~p~~llEAma~G~PVI~t 334 (406)
T PRK15427 317 IPVALMEAMAVGIPVVST 334 (406)
T ss_pred ccHHHHHHHhCCCCEEEe
Confidence 567789999999999875
No 319
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=46.62 E-value=84 Score=20.76 Aligned_cols=58 Identities=16% Similarity=-0.030 Sum_probs=30.9
Q ss_pred HHHHcCCCCCcccccccCCChhHHHHHH---hhCCCc-ceEEEeehHhHHHHHHHhCCchhhh
Q 032013 82 FLHKLGIHSMFVPMVRLSCCIMCIIFFL---FFFSIS-AFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 82 ~l~~~gl~~~f~~~~~~~p~p~~~i~~~---~~~~~~-~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
.+++.++.+ .+..-...+++..-+... ..+++. .-++--+++......+.+|++.+|+
T Consensus 54 ~l~~a~i~~-a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 54 VLERAGIEK-ADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHHTTGGC-ESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEE
T ss_pred HHhhcCccc-cCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEEC
Confidence 344555433 233334445553333332 334553 4444457777788888889888775
No 320
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=46.27 E-value=13 Score=32.04 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCcc--HHHHHHHHHH-CCceEEEE
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPH--AKGILEALKE-KGIHVAVA 70 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg--~~e~L~~Lk~-~Gi~i~Ia 70 (149)
...++++-||+|.||..... +.+.. -..+.++|.+ .|||-.+.
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~---------~~~~~L~y~~~~~~LV~~~gYP~~ll 54 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS---------PELEELIYELARERLVEEKGYPEELL 54 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C---------CHHHHHHHHHHHHHHHHHTT--GGGG
T ss_pred cccCCEEEECcccchhhcCH---------HHHHHHHHHHHHHHHHhccCCCHHHh
Confidence 45589999999999998411 01111 1244566666 67775543
No 321
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=46.08 E-value=30 Score=22.63 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=21.7
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|++++.++.+..... ...-.++++-|||.++.
T Consensus 22 sL~eL~~K~~~~l~l~-~~~~~lvL~eDGTeVdd 54 (78)
T cd01615 22 SLEELLSKACEKLKLP-SAPVTLVLEEDGTEVDD 54 (78)
T ss_pred CHHHHHHHHHHHcCCC-CCCeEEEEeCCCcEEcc
Confidence 3667777765532222 23456999999999974
No 322
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=46.06 E-value=62 Score=26.95 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=47.7
Q ss_pred HHHHHHHHHHC--------CceEEEEeCCC-chHHHHHHHHHcCCCCCccccccc-CCChhHHHHHHhhC--CCcceEEE
Q 032013 53 AKGILEALKEK--------GIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRL-SCCIMCIIFFLFFF--SISAFILF 120 (149)
Q Consensus 53 ~~e~L~~Lk~~--------Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~-~p~p~~~i~~~~~~--~~~~~l~~ 120 (149)
..++++.+++. ++.+.++=.++ ... .+...+..++.+.. ...++ ..+..+.+|....+ .+.....-
T Consensus 250 li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~-l~~~~~~~~l~~~~-~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~ 327 (415)
T cd03816 250 LLDALVAYEKSAATGPKLPKLLCIITGKGPLKEK-YLERIKELKLKKVT-IRTPWLSAEDYPKLLASADLGVSLHTSSSG 327 (415)
T ss_pred HHHHHHHHHHhhcccccCCCEEEEEEecCccHHH-HHHHHHHcCCCcEE-EEcCcCCHHHHHHHHHhCCEEEEccccccc
Confidence 45566666542 36766664443 455 57788888875421 11122 33444555555332 11111112
Q ss_pred eehHhHHHHHHHhCCchhhhh
Q 032013 121 VDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 121 eDs~~gi~aa~~ag~~~~~~~ 141 (149)
|.-++=+..|.++|.++++..
T Consensus 328 ~~~p~~~~Eama~G~PVI~s~ 348 (415)
T cd03816 328 LDLPMKVVDMFGCGLPVCALD 348 (415)
T ss_pred cCCcHHHHHHHHcCCCEEEeC
Confidence 334556889999999998754
No 323
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=45.79 E-value=35 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.0
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34678899999999999999999987665
No 324
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.63 E-value=28 Score=21.66 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHCCceEEEEe
Q 032013 50 YPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
.+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678899999999999999988
No 325
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.16 E-value=31 Score=23.65 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHC---CceEEEEeCCCc--hHHHHHHHHHcCCCCCcccccccCCChhHHHHHH-hhCCCcceEEEeehH
Q 032013 51 PHAKGILEALKEK---GIHVAVASRSPA--PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL-FFFSISAFILFVDLF 124 (149)
Q Consensus 51 pg~~e~L~~Lk~~---Gi~i~IaT~~~~--~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~-~~~~~~~~l~~eDs~ 124 (149)
|...+.+..+.+. ++++.+.||... .+ ....+...+..... ...-..+| ..+.. ..-+ -.+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~-~l~~l~~~~~~~i~--~~l~s~~~--~~~~~~~~~~----~~~~~~~ 130 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGTLLDEE-LLDELKKLGVDRIR--ISLESLDE--ESVLRIINRG----KSFERVL 130 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEESTTHCHH-HHHHHHHTTCSEEE--EEEBSSSH--HHHHHHHSST----SHHHHHH
T ss_pred hhHHHHHHHHHHhhccccceeeeccccchhHH-HHHHHHhcCccEEe--cccccCCH--HHhhhhhcCC----CCHHHHH
Confidence 5667777777765 999999998887 45 45666666643222 12334455 21222 2111 1247888
Q ss_pred hHHHHHHHhCCch
Q 032013 125 CFMYAAAYVGCDL 137 (149)
Q Consensus 125 ~gi~aa~~ag~~~ 137 (149)
..++.++.+|++.
T Consensus 131 ~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 131 EALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHTTSET
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999874
No 326
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=44.81 E-value=36 Score=26.69 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchH
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
+.++|+.|+++ +.++|+||+....
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k 24 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPK 24 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHH
Confidence 46889999986 9999999998765
No 327
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.76 E-value=33 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=22.9
Q ss_pred ccCccHHHHHHHHHHCC--ceE-EEEeCCCchHHHHHHHHHcCC
Q 032013 48 YLYPHAKGILEALKEKG--IHV-AVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~G--i~i-~IaT~~~~~~i~~~~l~~~gl 88 (149)
+..+...+.++++++.+ .++ ++++++ ... ...+...|.
T Consensus 48 p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~--i~~a~~~g~ 88 (265)
T cd03174 48 PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKG--IERALEAGV 88 (265)
T ss_pred ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhh--HHHHHhCCc
Confidence 34467788899998887 677 444444 333 234444553
No 328
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=44.71 E-value=80 Score=24.61 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEeehHhHH
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFVDLFCFM 127 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi 127 (149)
.+.++++.+.++ ++++.++-+++........++.+++...+... +. .+.+..+|... .+.|+. .|-.+.=+
T Consensus 205 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~v~~s~---~e~~~~~~ 279 (360)
T cd04951 205 NLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLL-GL-RDDIAAYYNAADLFVLSSA---WEGFGLVV 279 (360)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEe-cc-cccHHHHHHhhceEEeccc---ccCCChHH
Confidence 344555565554 68888887655432146666777765432221 22 22333444432 222322 14445667
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
.-|.++|+++|+..
T Consensus 280 ~Ea~a~G~PvI~~~ 293 (360)
T cd04951 280 AEAMACELPVVATD 293 (360)
T ss_pred HHHHHcCCCEEEec
Confidence 78899999988753
No 329
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=44.70 E-value=34 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=21.5
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|+++..++......... .-.++++-|||.++.
T Consensus 20 sL~eL~~K~~~~l~l~~~-~~~l~L~eDGT~Vdd 52 (74)
T smart00266 20 SLEELLSKVCDKLALPDS-PVTLVLEEDGTIVDD 52 (74)
T ss_pred CHHHHHHHHHHHhCCCCC-CcEEEEecCCcEEcc
Confidence 366777776554322222 456899999999974
No 330
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=44.43 E-value=58 Score=27.17 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC-CCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl-~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~ 128 (149)
.|=+..+.+.|+++|++.+++|-+..... . ...+ ..-........=+| .+.+.. .-..-.+.+|-.-++.
T Consensus 63 TP~vi~la~~l~~rG~~~gvvSRGYgg~~-~----~~~~~~~~~~~a~~~GDEP--lLlA~~--t~~pv~v~~~R~~~~~ 133 (336)
T COG1663 63 TPVVIWLAEALQARGVRVGVVSRGYGGKL-K----VVPLVDNIHTTAAEVGDEP--LLLARR--TGAPVAVSPDRKDAAK 133 (336)
T ss_pred CHHHHHHHHHHHhcCCeeEEEecCcCCCC-c----cccccccCcCChHHcCchH--HHHhhh--cCCcEEEehhHHHHHH
Confidence 47788999999999999999995543310 0 0000 00011111223334 333332 2234577789999999
Q ss_pred HHHH--hCCchhhh
Q 032013 129 AAAY--VGCDLYVY 140 (149)
Q Consensus 129 aa~~--ag~~~~~~ 140 (149)
++.+ .||++||.
T Consensus 134 ~l~~~~~~~diIi~ 147 (336)
T COG1663 134 ALLAAHLGCDIIVL 147 (336)
T ss_pred HHHhhCCCCCEEEE
Confidence 9999 69999985
No 331
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=44.11 E-value=13 Score=30.91 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=15.0
Q ss_pred CCccEEEEecCCccccc
Q 032013 20 NLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~ 36 (149)
..++++-||+|.||...
T Consensus 10 ~~i~~~GFDmDyTLa~Y 26 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQY 26 (343)
T ss_pred ccCCEEEECcccccccc
Confidence 45899999999999984
No 332
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=43.96 E-value=38 Score=29.23 Aligned_cols=103 Identities=10% Similarity=-0.018 Sum_probs=62.3
Q ss_pred cEEEEecCCc-cccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013 23 RLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101 (149)
Q Consensus 23 k~vifDlDGT-Lld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~ 101 (149)
.+.++|+||- .+|.-..|-+--- -.-.|.+.+.+++.-++|..++.=|--.... ++.+.+..+..+.....+-..-.
T Consensus 44 Ga~l~DvDGn~YIDy~~~~Gp~il-GH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~~-Aell~~~~p~~e~vrfvnSGTEA 121 (432)
T COG0001 44 GAYLTDVDGNEYIDYVLGWGPLIL-GHAHPAVVEAVQEQLERGLSFGAPTELEVEL-AELLIERVPSIEKVRFVNSGTEA 121 (432)
T ss_pred CCeEEeCCCCEeeehhccCccccc-CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHHHhcCcccEEEEecchhHH
Confidence 4689999995 4443222321100 1245778899988888886666433332233 55566666654555555555555
Q ss_pred hhHHHHHHhhCCC-cceEEEeehHhHH
Q 032013 102 IMCIIFFLFFFSI-SAFILFVDLFCFM 127 (149)
Q Consensus 102 p~~~i~~~~~~~~-~~~l~~eDs~~gi 127 (149)
-|.-|=+++++.- +.=++||...+|=
T Consensus 122 tmsAiRlARa~TgR~kIikF~G~YHG~ 148 (432)
T COG0001 122 TMSAIRLARAYTGRDKIIKFEGCYHGH 148 (432)
T ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCC
Confidence 6667777777554 5668888888773
No 333
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=43.91 E-value=9.6 Score=31.55 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.9
Q ss_pred hHHHHHHHhCCchhhhhhhhh
Q 032013 125 CFMYAAAYVGCDLYVYKRLIK 145 (149)
Q Consensus 125 ~gi~aa~~ag~~~~~~~~~~~ 145 (149)
+=|+.|+++|++++-|.|||.
T Consensus 97 ~~i~~A~~~gikViaYDRlI~ 117 (341)
T COG4213 97 NAVEKAKSEGIKVIAYDRLIN 117 (341)
T ss_pred HHHHHHHHcCCeEEEeecccc
Confidence 458899999999999999996
No 334
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.67 E-value=1.2e+02 Score=24.49 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=31.6
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~ 73 (149)
...+.+|.|-. +....+.-+. .-+|+..+++++|+++|+++++...-
T Consensus 46 ~d~i~iD~~w~--~~~g~f~~d~---~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 46 NGQIEIDDNWE--TCYGDFDFDP---TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CCeEEeCCCcc--ccCCccccCh---hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 46788897642 1111111121 36789999999999999999986643
No 335
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=43.63 E-value=62 Score=20.77 Aligned_cols=57 Identities=16% Similarity=0.365 Sum_probs=37.7
Q ss_pred ccEEEEecCCc-cccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 22 PRLVVFDLDYT-LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 22 ~k~vifDlDGT-Lld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
++.+++|+-++ .+|+ ....-..++.+.++++|.++.++.-++ . +...++..|+...+
T Consensus 41 ~~~lilD~~~v~~iDs-----------s~~~~L~~~~~~~~~~~~~~~l~~~~~--~-~~~~l~~~g~~~~~ 98 (107)
T cd07042 41 LKVVILDLSAVNFIDS-----------TAAEALEELVKDLRKRGVELYLAGLNP--Q-VRELLERAGLLDEI 98 (107)
T ss_pred ceEEEEECCCCchhhH-----------HHHHHHHHHHHHHHHCCCEEEEecCCH--H-HHHHHHHcCcHHHh
Confidence 46788999884 4441 122334577788889998888774333 4 57888888876544
No 336
>PLN02275 transferase, transferring glycosyl groups
Probab=43.60 E-value=1.1e+02 Score=24.90 Aligned_cols=76 Identities=8% Similarity=-0.066 Sum_probs=45.8
Q ss_pred CceEEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCC-ChhHHHHHHhh--CCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 64 GIHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSC-CIMCIIFFLFF--FSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 64 Gi~i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p-~p~~~i~~~~~--~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
++++.++=.++. +. .+...+.+|+.+ +....+.-| +..+.+|.... +.+.....-|..++-+..|.++|.++++
T Consensus 261 ~i~l~ivG~G~~~~~-l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa 338 (371)
T PLN02275 261 RLLFIITGKGPQKAM-YEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA 338 (371)
T ss_pred CeEEEEEeCCCCHHH-HHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE
Confidence 577877766554 55 578888899876 332222233 33345555532 2121111125678889999999999987
Q ss_pred hh
Q 032013 140 YK 141 (149)
Q Consensus 140 ~~ 141 (149)
..
T Consensus 339 ~~ 340 (371)
T PLN02275 339 VS 340 (371)
T ss_pred ec
Confidence 53
No 337
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=43.57 E-value=96 Score=25.69 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=51.4
Q ss_pred CccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccccc--cCCChhHHHHHHhhCCCcceEEEeeh
Q 032013 47 PYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR--LSCCIMCIIFFLFFFSISAFILFVDL 123 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~--~~p~p~~~i~~~~~~~~~~~l~~eDs 123 (149)
..+..+..++++.+++.++ .+++-||+..-.-....++..|+.. +++ -.-+| +.|-++- +. .. +++-
T Consensus 70 PllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~r----VNVSLDsld~--e~f~~IT-~~-~~--~~~V 139 (322)
T COG2896 70 PLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDR----VNVSLDSLDP--EKFRKIT-GR-DR--LDRV 139 (322)
T ss_pred chhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcE----EEeecccCCH--HHHHHHh-CC-Cc--HHHH
Confidence 4567788888888887644 4666667653211345667777643 332 35555 7777643 11 22 7888
Q ss_pred HhHHHHHHHhCCc
Q 032013 124 FCFMYAAAYVGCD 136 (149)
Q Consensus 124 ~~gi~aa~~ag~~ 136 (149)
..||.||.+||..
T Consensus 140 l~GI~~A~~~Gl~ 152 (322)
T COG2896 140 LEGIDAAVEAGLT 152 (322)
T ss_pred HHHHHHHHHcCCC
Confidence 8999999999975
No 338
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.19 E-value=60 Score=23.00 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHCCc-e-EEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 52 HAKGILEALKEKGI-H-VAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi-~-i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
.+.++++.|+++|. . ..++-|..... -...+++.|++.+|.
T Consensus 69 ~~~~~~~~L~~~g~~~i~vivGG~~~~~-~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 69 LVPALRKELDKLGRPDILVVVGGVIPPQ-DFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCChH-hHHHHHHCCCCEEEC
Confidence 34455566666543 1 22232223333 244566666655554
No 339
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.97 E-value=60 Score=25.59 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCceEEEEeCCCc-hHHHHHHHHHc---CCCCCccccccc--CCChhHHHHHH------hhCCCcceEEE
Q 032013 53 AKGILEALKEKGIHVAVASRSPA-PDIAKTFLHKL---GIHSMFVPMVRL--SCCIMCIIFFL------FFFSISAFILF 120 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~-~~i~~~~l~~~---gl~~~f~~~~~~--~p~p~~~i~~~------~~~~~~~~l~~ 120 (149)
...+|+++.+.|.|+++-||... .+ ++..++.+ +-.+ +...++. -|.|.-++.+. ..++ .-+-|
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~E-I~~Av~~~~~~~~~~-l~llHC~s~YP~~~e~~NL~~i~~L~~~f~--~~vG~ 177 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEE-IERAVEVLREAGNED-LVLLHCVSSYPTPPEDVNLRVIPTLKERFG--VPVGY 177 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHH-HHHHHHHHHHHCT---EEEEEE-SSSS--GGG--TTHHHHHHHHST--SEEEE
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHH-HHHHHHHHHhcCCCC-EEEEecCCCCCCChHHcChHHHHHHHHhcC--CCEEe
Confidence 35799999999999999998764 34 34444444 4333 2222322 34444445443 3355 34788
Q ss_pred eehHhHHHHHHHh---CCchh
Q 032013 121 VDLFCFMYAAAYV---GCDLY 138 (149)
Q Consensus 121 eDs~~gi~aa~~a---g~~~~ 138 (149)
.|=..|+.++..| |+.+|
T Consensus 178 SDHt~g~~~~~~AvalGA~vI 198 (241)
T PF03102_consen 178 SDHTDGIEAPIAAVALGARVI 198 (241)
T ss_dssp EE-SSSSHHHHHHHHTT-SEE
T ss_pred CCCCCCcHHHHHHHHcCCeEE
Confidence 8888787665554 77653
No 340
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.76 E-value=1.1e+02 Score=24.43 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=32.4
Q ss_pred ccEEEEecCCccc-------cccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013 22 PRLVVFDLDYTLW-------PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS 73 (149)
Q Consensus 22 ~k~vifDlDGTLl-------d~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~ 73 (149)
.+.|.+|+|=... +.+..+.=+. ..+|+..+++++|+++|+++++...-
T Consensus 41 ~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~---~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 41 LDVLVIDMDWHVTDIPSKYGSGWTGYSWNR---KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred ccEEEEecccccccccccccCCcceeEECh---hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 5779999883221 1111111111 36789999999999999999987743
No 341
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.75 E-value=35 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=22.0
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|+++..++.+.... ..+-.++++-|||.+|.
T Consensus 22 sL~EL~~K~~~~L~~--~~~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 22 SLQELLAKALETLLL--SGVLTLVLEEDGTAVDS 53 (81)
T ss_pred CHHHHHHHHHHHhCC--CCceEEEEecCCCEEcc
Confidence 467777777553322 23466999999999974
No 342
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=42.48 E-value=43 Score=26.81 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=32.1
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..||-..+=+.|++.|+|.+|+|-.+... ...-++..|+-
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~~d~l~~~g~G 111 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKK-VKDAMEEQGLG 111 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccc-hHHHHHhcCCc
Confidence 45666666677788999999999998877 67888888874
No 343
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=24 Score=27.99 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=32.4
Q ss_pred ecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 28 DLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 28 DlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
..+|.-+. .++-....+.+.++++.++++|+++++.||+....
T Consensus 83 ~~~gvt~S-------GGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 83 SGGGVTFS-------GGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred CCCEEEEE-------CCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 45666554 33444566788899999999999999999986543
No 344
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=41.54 E-value=34 Score=20.84 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCC
Q 032013 51 PHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
|+-.+.|+.|.+.|.++.|.|-..
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~e 25 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSE 25 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHH
Confidence 566899999999999999988543
No 345
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=41.15 E-value=1.4e+02 Score=22.97 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=47.0
Q ss_pred HHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh-hHHHHHHhhCCCcce-EEEe--ehHhHHHHHHH
Q 032013 57 LEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI-MCIIFFLFFFSISAF-ILFV--DLFCFMYAAAY 132 (149)
Q Consensus 57 L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p-~~~i~~~~~~~~~~~-l~~e--Ds~~gi~aa~~ 132 (149)
-.-|.+.|+..+=++...... ....+.++-+-.|-. ...|.- +-.-+....-++..+ +.|- ..+.-|++|..
T Consensus 22 ~~~l~eag~~~Vg~~~~~~~~--~~~~~~~~pDvVild--ie~p~rd~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~~ 97 (194)
T COG3707 22 REGLLEAGYQRVGEAADGLEA--VEVCERLQPDVVILD--IEMPRRDIIEALLLASENVARPIVALTAYSDPALIEAAIE 97 (194)
T ss_pred HHHHHHcCCeEeeeecccccc--hhHHHhcCCCEEEEe--cCCCCccHHHHHHHhhcCCCCCEEEEEccCChHHHHHHHH
Confidence 345667788777777665443 233344443322222 222222 122222333445555 4444 67889999999
Q ss_pred hCCchhhhhhh
Q 032013 133 VGCDLYVYKRL 143 (149)
Q Consensus 133 ag~~~~~~~~~ 143 (149)
+|+..||.|-|
T Consensus 98 ~Gv~ayivkpi 108 (194)
T COG3707 98 AGVMAYIVKPL 108 (194)
T ss_pred cCCeEEEecCc
Confidence 99999998854
No 346
>PRK15108 biotin synthase; Provisional
Probab=41.08 E-value=52 Score=27.18 Aligned_cols=78 Identities=9% Similarity=0.097 Sum_probs=48.5
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFM 127 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi 127 (149)
.++.+.++++.+++.++.++ +|++.. .+ ....|+..|++.+-.. ..++| ..|.... + . --++|-...+
T Consensus 109 ~~e~i~~~i~~ik~~~i~v~-~s~G~ls~e-~l~~LkeAGld~~n~~---leT~p--~~f~~I~-~-~--~~~~~rl~~i 177 (345)
T PRK15108 109 DMPYLEQMVQGVKAMGLETC-MTLGTLSES-QAQRLANAGLDYYNHN---LDTSP--EFYGNII-T-T--RTYQERLDTL 177 (345)
T ss_pred hHHHHHHHHHHHHhCCCEEE-EeCCcCCHH-HHHHHHHcCCCEEeec---cccCh--HhcCCCC-C-C--CCHHHHHHHH
Confidence 34566778888887777765 565433 34 4566777787654221 23345 5554322 1 1 2578888999
Q ss_pred HHHHHhCCch
Q 032013 128 YAAAYVGCDL 137 (149)
Q Consensus 128 ~aa~~ag~~~ 137 (149)
..|+++|+++
T Consensus 178 ~~a~~~G~~v 187 (345)
T PRK15108 178 EKVRDAGIKV 187 (345)
T ss_pred HHHHHcCCce
Confidence 9999999865
No 347
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=40.92 E-value=94 Score=26.14 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=53.3
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCc-----hHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhC--CC---cce
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPA-----PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFF--SI---SAF 117 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~-----~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~--~~---~~~ 117 (149)
......+|..++++|+|+++=++... .. ++++.++.|+. +....+..-++...+--. .+. .+ .+-
T Consensus 57 ~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~-v~eia~e~Gl~--lkvA~V~gDd~~~~v~~~~~~g~~~~~l~~~~~ 133 (362)
T PF07287_consen 57 VRDLRPLLPAAAEKGIKVITNAGGLNPAGCADI-VREIARELGLS--LKVAVVYGDDLKDEVKELLAEGETIRPLDTGPP 133 (362)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH-HHHHHHhcCCC--eeEEEEECccchHhHHHHHhCCCCCccCCCCCC
Confidence 34566888999999999988776542 23 57777888887 333323322332233222 111 11 111
Q ss_pred EE-E-ee--h------HhHHHHHHHhCCchhhhhhh
Q 032013 118 IL-F-VD--L------FCFMYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 118 l~-~-eD--s------~~gi~aa~~ag~~~~~~~~~ 143 (149)
+. . ++ | .-+|..|.++|+++|+--|.
T Consensus 134 l~~~~~~~~~a~aylGa~pI~~AL~~GADIVI~GR~ 169 (362)
T PF07287_consen 134 LSEWDDRIVSANAYLGAEPIVEALEAGADIVITGRV 169 (362)
T ss_pred cchhccccceEEEecChHHHHHHHHcCCCEEEeCcc
Confidence 10 0 01 1 35889999999999998774
No 348
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.58 E-value=34 Score=25.35 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=28.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK 63 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~ 63 (149)
..++++|=||++...| ..+++.+.+.++++.|++.
T Consensus 121 R~TfvId~dG~I~~~~-------~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 121 RSTFVIDPDGKIRYVW-------RKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ceEEEECCCCeEEEEe-------cCCCCcccHHHHHHHHHHh
Confidence 4579999999999743 4467888999999998875
No 349
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=40.46 E-value=1.6e+02 Score=22.30 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=30.5
Q ss_pred HHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH
Q 032013 54 KGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL 109 (149)
Q Consensus 54 ~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~ 109 (149)
.++++++++. +.++++.|+......+...+...|..+|+ .|+.+...+.-+
T Consensus 56 l~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl-----~K~~~~~eL~~a 108 (207)
T PRK11475 56 LSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVL-----SKASTLEILQQE 108 (207)
T ss_pred HHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEE-----ecCCCHHHHHHH
Confidence 3677887765 68999999865433123334456776653 356655555444
No 350
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=40.44 E-value=1.1e+02 Score=23.06 Aligned_cols=85 Identities=9% Similarity=0.165 Sum_probs=46.2
Q ss_pred cHHHHHHHHHH--CCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEeehHhHH
Q 032013 52 HAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFVDLFCFM 127 (149)
Q Consensus 52 g~~e~L~~Lk~--~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi 127 (149)
.+.++++.+++ .++++.++-+.+.........+..++...+... +. ..-+..+|... .+.|+. .|-.+.-+
T Consensus 195 ~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~-g~-~~~~~~~~~~ad~~i~ps~---~e~~~~~~ 269 (348)
T cd03820 195 LLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILL-GF-TKNIEEYYAKASIFVLTSR---FEGFPMVL 269 (348)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEc-CC-cchHHHHHHhCCEEEeCcc---ccccCHHH
Confidence 34455666653 356777776554433235556666665433221 11 23333444442 233322 25557778
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
.-|.++|+++++..
T Consensus 270 ~Ea~a~G~Pvi~~~ 283 (348)
T cd03820 270 LEAMAFGLPVISFD 283 (348)
T ss_pred HHHHHcCCCEEEec
Confidence 88999999998764
No 351
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=40.21 E-value=1.3e+02 Score=24.75 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=32.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~ 72 (149)
.+++.+|+|-. +.+..+.=+ ..-+|...+++++|+++|+++++...
T Consensus 40 ~D~i~lDidy~--~~~~~Ft~d---~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 40 LDGLHVDVDFQ--DNYRTFTTN---GGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CceEEEcCchh--cCCCceeec---CCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 57799999864 322222111 14678889999999999999987654
No 352
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=40.09 E-value=50 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 4678899999999999999999887665
No 353
>PRK13938 phosphoheptose isomerase; Provisional
Probab=39.77 E-value=49 Score=25.16 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 4788899999999999999999987665
No 354
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=39.75 E-value=31 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHCCceEEEEeC
Q 032013 51 PHAKGILEALKEKGIHVAVASR 72 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~ 72 (149)
|.+.+++++.|++|.+++.+||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 7888999999999999998885
No 355
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=38.94 E-value=1.1e+02 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=29.9
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccH--HHHHHHHHHCCceEEEEeC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA--KGILEALKEKGIHVAVASR 72 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~--~e~L~~Lk~~Gi~i~IaT~ 72 (149)
...+.+|+|=. +.+..+.=+. ..+|.. .+++++|+++|+++.+..+
T Consensus 40 ~d~i~lD~~~~--~~~~~f~~d~---~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 40 LDVQWNDIDYM--DRRRDFTLDP---VRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred cceEEECcccc--cCccceeccc---ccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 46677887732 1111111111 356777 9999999999999988773
No 356
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=38.51 E-value=50 Score=21.72 Aligned_cols=44 Identities=14% Similarity=-0.036 Sum_probs=30.0
Q ss_pred CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEE--EeehH
Q 032013 64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFIL--FVDLF 124 (149)
Q Consensus 64 Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~--~eDs~ 124 (149)
.+++.|+||...+.+ |+. +|.-++++-....-.|++||| ++|+.
T Consensus 8 rl~VLVv~n~c~~kL-------------~~~----~~~~D~~~i~r~f~TpdN~lV~V~~~nr 53 (83)
T PF10623_consen 8 RLQVLVVSNHCERKL-------------FDT----KPDNDPDKIARRFCTPDNCLVCVLQDNR 53 (83)
T ss_pred eEEEEEEeCCcceeE-------------eec----CCCCCHHHHHhhccCcCCeEEEEEeCCc
Confidence 367788887766552 333 666666888888889999954 55653
No 357
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=38.37 E-value=37 Score=23.10 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=28.2
Q ss_pred cCccHHHHHHHHHHCCceEEEEeC------CCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASR------SPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~------~~~~~i~~~~l~~~gl~ 89 (149)
..|...++.++.+++|+.++-++. ..... ++..+++.++.
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLAN-VKSAVLRYGIT 86 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHH-HHHHHHHcCCC
Confidence 456777777888778888887764 23445 57778888875
No 358
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=38.34 E-value=55 Score=26.73 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=46.1
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEee
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVD 122 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eD 122 (149)
+..+.++++|+.++=+|----.. ++...+.+.-..|...+.+-+-|| .+-...+..+...+++++
T Consensus 79 ~~~~~~~~~g~~viDaTCP~V~k-~~~~v~~~~~~Gy~vvi~G~~~Hp--Ev~gi~g~~~~~~~vv~~ 143 (298)
T PRK01045 79 AVREEAKERGLTVIDATCPLVTK-VHKEVARMSREGYEIILIGHKGHP--EVEGTMGQAPGGVYLVES 143 (298)
T ss_pred HHHHHHHHCCCeEEeCCCccchH-HHHHHHHHHhCCCEEEEEeCCCCC--eeeeeccCcCCCEEEEcC
Confidence 66777888888888777666566 566666666667766667778888 666666665666777775
No 359
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.97 E-value=1.2e+02 Score=24.65 Aligned_cols=45 Identities=20% Similarity=0.545 Sum_probs=30.7
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
...+.+|+|-+ +....+.=+ ...+|+..+++++|+++|+++.+..
T Consensus 40 ~d~i~lD~~~~--~~~~~f~~d---~~~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 40 YDVVFLDIHYM--DSYRLFTWD---PYRFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cceEEEChhhh--CCCCceeec---hhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 46788887754 222221111 1367899999999999999988765
No 360
>PRK07094 biotin synthase; Provisional
Probab=37.94 E-value=61 Score=26.07 Aligned_cols=78 Identities=6% Similarity=0.125 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHH
Q 032013 51 PHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYA 129 (149)
Q Consensus 51 pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~a 129 (149)
+.+.++++.+++. ++.+.+-++....+ ....++..|+..+.-..+ ..+| .+|-... + ..-+||....+..
T Consensus 103 ~~l~~l~~~i~~~~~l~i~~~~g~~~~e-~l~~Lk~aG~~~v~~glE--s~~~--~~~~~i~--~--~~s~~~~~~~i~~ 173 (323)
T PRK07094 103 EKIADIIKEIKKELDVAITLSLGERSYE-EYKAWKEAGADRYLLRHE--TADK--ELYAKLH--P--GMSFENRIACLKD 173 (323)
T ss_pred HHHHHHHHHHHccCCceEEEecCCCCHH-HHHHHHHcCCCEEEeccc--cCCH--HHHHHhC--C--CCCHHHHHHHHHH
Confidence 4556677777763 55555434443344 355666667654432221 2233 4444332 1 2345778888888
Q ss_pred HHHhCCch
Q 032013 130 AAYVGCDL 137 (149)
Q Consensus 130 a~~ag~~~ 137 (149)
++++|+++
T Consensus 174 l~~~Gi~v 181 (323)
T PRK07094 174 LKELGYEV 181 (323)
T ss_pred HHHcCCee
Confidence 88888764
No 361
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=37.70 E-value=1.3e+02 Score=22.79 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=44.9
Q ss_pred HHHHHHHHHH--CCceEEEEeCCCchHHHHHH-HHHcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEeehHhHH
Q 032013 53 AKGILEALKE--KGIHVAVASRSPAPDIAKTF-LHKLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFVDLFCFM 127 (149)
Q Consensus 53 ~~e~L~~Lk~--~Gi~i~IaT~~~~~~i~~~~-l~~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi 127 (149)
..++++.+++ .++++.++.+.+........ ++..+....+.. .+. .+.+..+|... .+.|+.. |-.+.-+
T Consensus 206 li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~-~g~-~~~~~~~~~~adi~i~ps~~---e~~~~~~ 280 (359)
T cd03808 206 LLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEF-LGF-RDDVPELLAAADVFVLPSYR---EGLPRVL 280 (359)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEE-eec-cccHHHHHHhccEEEecCcc---cCcchHH
Confidence 4466666654 45788888776654411221 344444332221 122 33444555542 2333222 5567788
Q ss_pred HHHHHhCCchhhh
Q 032013 128 YAAAYVGCDLYVY 140 (149)
Q Consensus 128 ~aa~~ag~~~~~~ 140 (149)
.-|.++|+++++.
T Consensus 281 ~Ea~~~G~Pvi~s 293 (359)
T cd03808 281 LEAMAMGRPVIAT 293 (359)
T ss_pred HHHHHcCCCEEEe
Confidence 8899999998874
No 362
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=37.56 E-value=50 Score=21.70 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=22.1
Q ss_pred cHHHhHHHHHhhhhcc-CCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQF-ENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~k~vifDlDGTLld~ 36 (149)
.|+++..++.+..... ...+-.++++-|||.++.
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 22 SLEELRIKACESLGFDSSSAPITLVLAEDGTIVED 56 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEcc
Confidence 4667777765533222 223466999999999974
No 363
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.48 E-value=43 Score=26.86 Aligned_cols=40 Identities=33% Similarity=0.368 Sum_probs=31.3
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..||-..+=+.|++.|+|.+|+|-.+... .+.-++..|+-
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~G 110 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFG 110 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-E
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCc
Confidence 55777777788889999999999888776 67888888874
No 364
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=37.39 E-value=1.2e+02 Score=23.24 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=44.8
Q ss_pred cHHHHHHHHHH--CCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhh--CCCcceEEEeehHhHH
Q 032013 52 HAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFF--FSISAFILFVDLFCFM 127 (149)
Q Consensus 52 g~~e~L~~Lk~--~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~--~~~~~~l~~eDs~~gi 127 (149)
.+.++++.+++ .++++.++.+.+...-.....+..++...+........+-...++.... +.|+. .|-...-+
T Consensus 219 ~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~---~e~~~~~~ 295 (374)
T cd03817 219 FLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST---TETQGLVL 295 (374)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc---ccCcChHH
Confidence 34566666665 4577777765543321355555566654332222222233334444422 22211 23334457
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
.-|.++|.++|+..
T Consensus 296 ~Ea~~~g~PvI~~~ 309 (374)
T cd03817 296 LEAMAAGLPVVAVD 309 (374)
T ss_pred HHHHHcCCcEEEeC
Confidence 77888899988753
No 365
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=37.00 E-value=81 Score=20.30 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..++.+.|.+.|+++. +|.+. ..+|+..|+.
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~gT-----a~~L~~~Gi~ 32 (90)
T smart00851 2 LVELAKRLAELGFELV-ATGGT-----AKFLREAGLP 32 (90)
T ss_pred HHHHHHHHHHCCCEEE-EccHH-----HHHHHHCCCc
Confidence 4577888999999995 77764 3456667764
No 366
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=36.94 E-value=85 Score=23.95 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=25.4
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.+++.++.+.|.+.|+++. +|++. ...|+..|+
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GT-----Ak~L~e~GI 42 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGT-----AKFLKEAGI 42 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHH-----HHHHHHcCC
Confidence 4788999999999999995 88774 344555665
No 367
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=36.84 E-value=86 Score=21.61 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=30.9
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..|...+..++++++|+.++.+|..+... +....+..++.
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~~~~-~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDSPFS-LRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCHHH-HHHHHHhcCCC
Confidence 45666777888888899998888777666 67888887754
No 368
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=36.74 E-value=65 Score=29.20 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC-Ccc
Q 032013 46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFV 93 (149)
Q Consensus 46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~ 93 (149)
.+++.|++.++|+++.+. +.+-|.|-+++.. +..+++-+.-.. ||.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~Y-A~~i~~liDP~~~lF~ 245 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDY-ALEIAKLIDPEGKYFG 245 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHH-HHHHHHHhCCCCcccc
Confidence 467899999999999977 9999999999988 888888776544 454
No 369
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=36.67 E-value=49 Score=26.66 Aligned_cols=41 Identities=22% Similarity=0.070 Sum_probs=25.3
Q ss_pred EecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEE
Q 032013 27 FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVA 68 (149)
Q Consensus 27 fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~ 68 (149)
=|++||+++-++. +.-+......+...++.+.+++.|....
T Consensus 260 nd~~gt~~~e~v~-~~ag~~~~~~~~~~~l~~~~~~~g~~~~ 300 (309)
T TIGR00423 260 NDLGGTLMEENIS-KAAGAKSGVGLTVEELIEAIKDAGRVPA 300 (309)
T ss_pred ccCCcccccceec-cccCCCCCCCCCHHHHHHHHHHcCCCee
Confidence 4999999884332 1111112235677888888888886543
No 370
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=36.48 E-value=53 Score=26.60 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEee
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVD 122 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eD 122 (149)
+..+.++++|..++=+|----.. +....+++.-.+|..-+.+-+.|| .+-...+..+...+++|+
T Consensus 82 ~~~~~~~~~g~~viDaTCP~V~k-~~~~v~~~~~~Gy~iviiG~~~Hp--Ev~gi~g~~~~~~~vv~~ 146 (281)
T PRK12360 82 KVYKDLKDKGLEIIDATCPFVKK-IQNIVEEYYNKGYSIIIVGDKNHP--EVIGINGWCDNSAYIVNS 146 (281)
T ss_pred HHHHHHHHCCCeEEeCCCccchH-HHHHHHHHHhCCCEEEEEcCCCCc--eeeEeccCcCCCeEEECC
Confidence 67778888888887777655555 566666666566666667778888 665556655566677764
No 371
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=36.45 E-value=1.4e+02 Score=23.76 Aligned_cols=85 Identities=8% Similarity=0.064 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHhHH
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFM 127 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi 127 (149)
.+.+++..++++ .+++.++..++.........+..++...+... ++.+++ ..+|.. ..+.|+. .|--+.-+
T Consensus 221 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~-g~~~~~-~~~~~~ad~~v~~S~---~Eg~~~~~ 295 (372)
T cd04949 221 QLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLK-GYTRDL-DEVYQKAQLSLLTSQ---SEGFGLSL 295 (372)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEc-CCCCCH-HHHHhhhhEEEeccc---ccccChHH
Confidence 344566666554 46777666544332135555667776543322 233332 344444 2233332 24445568
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
..|.++|+++|.+.
T Consensus 296 lEAma~G~PvI~~~ 309 (372)
T cd04949 296 MEALSHGLPVISYD 309 (372)
T ss_pred HHHHhCCCCEEEec
Confidence 88999999999764
No 372
>PRK14558 pyrH uridylate kinase; Provisional
Probab=36.36 E-value=98 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
++++-+++.|+++.|+++..... ....++
T Consensus 192 ~a~~~a~~~gi~v~I~ng~~~~~-l~~~l~ 220 (231)
T PRK14558 192 EAFSICKKYGITILVINFFEPGN-LLKALK 220 (231)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCH-HHHHHC
Confidence 44555667788888888876665 355543
No 373
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=36.36 E-value=56 Score=25.12 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.6
Q ss_pred cCccH-HHHHHHHHHCCceEEEEeCCCc
Q 032013 49 LYPHA-KGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 49 ~~pg~-~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
+.++. .++++.+++.|+++++.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45564 5899999999999999999873
No 374
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.33 E-value=46 Score=26.68 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=30.5
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.++.||+.+.++.|+++ .+-.|+|.+-... ++.....+|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy-~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQY-LRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHH-HHHHHHhcCC
Confidence 57899999999999998 4455566555566 5777787887
No 375
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=36.08 E-value=1.6e+02 Score=22.44 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHHHHHH--CCceEEEEeCCCchHHHHHHHH-HcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEeehHhHH
Q 032013 53 AKGILEALKE--KGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFVDLFCFM 127 (149)
Q Consensus 53 ~~e~L~~Lk~--~Gi~i~IaT~~~~~~i~~~~l~-~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi 127 (149)
+.++++.+.+ .++++.++.+.+.........+ ..++...+... + ..+.+..+|... .+.|+.. |-.+.-+
T Consensus 211 li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~-g-~~~~~~~~~~~adi~v~ps~~---e~~~~~~ 285 (365)
T cd03807 211 LLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILL-G-ERSDVPALLNALDVFVLSSLS---EGFPNVL 285 (365)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEc-c-ccccHHHHHHhCCEEEeCCcc---ccCCcHH
Confidence 3455555554 2577777765544331334444 55554332211 1 122334444442 2333222 5567788
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
.-|.++|+++|+..
T Consensus 286 ~Ea~a~g~PvI~~~ 299 (365)
T cd03807 286 LEAMACGLPVVATD 299 (365)
T ss_pred HHHHhcCCCEEEcC
Confidence 89999999998753
No 376
>PRK04531 acetylglutamate kinase; Provisional
Probab=35.69 E-value=85 Score=26.63 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=46.6
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
.+.++.=++|.++.. ..+...+-|..|++.|.+++|+-|+.+ . +...++..|+..-|.
T Consensus 36 ~~~~VIKiGG~~l~~------------~~~~l~~dla~L~~~G~~~VlVHGggp-q-I~~~l~~~gie~~~v 93 (398)
T PRK04531 36 ERFAVIKVGGAVLRD------------DLEALASSLSFLQEVGLTPIVVHGAGP-Q-LDAELDAAGIEKETV 93 (398)
T ss_pred CcEEEEEEChHHhhc------------CHHHHHHHHHHHHHCCCcEEEEECCCH-H-HHHHHHHcCCCcEEE
Confidence 378899999999861 126777889999999999999998864 4 689999999976544
No 377
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=35.62 E-value=74 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
.+-..|..+|+++++.|+... ++..+.++|+.-.
T Consensus 107 ~l~~~L~~~g~~w~vfTaT~~---lr~~~~rlgl~~~ 140 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTATRQ---LRNLFRRLGLPPT 140 (179)
T ss_pred HHHHHHHHCCCCEEEEeCCHH---HHHHHHHcCCCce
Confidence 445788999999999999853 5789999998643
No 378
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=35.22 E-value=31 Score=26.46 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=30.6
Q ss_pred EecCCccccccccccccCC-CCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 27 FDLDYTLWPFYCECCYEDE-IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 27 fDlDGTLld~~~~~~~~~~-~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
+|+-|-++.. +++. .+-+.|-..+..++|++. |+..+|+||+....-+..+.++++..-
T Consensus 21 ~dfng~~~~~-----p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~i 81 (199)
T PF14597_consen 21 LDFNGHAWRR-----PEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAKI 81 (199)
T ss_dssp EEEEEEEE-------TT--EEES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--EE
T ss_pred cCceeEEEEc-----CCCCEEecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCee
Confidence 4666666652 2211 122445556889999995 899999999987543677888887643
No 379
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=35.03 E-value=51 Score=21.62 Aligned_cols=32 Identities=25% Similarity=0.156 Sum_probs=21.4
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|+++..++.+.... . .+-.++++-|||.++.
T Consensus 22 sL~eL~~K~~~~l~l-~-~~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 22 SLEDLLNKVLDALLL-D-CISSLVLDEDGTGVDT 53 (79)
T ss_pred CHHHHHHHHHHHcCC-C-CccEEEEecCCcEEcc
Confidence 366777776554333 1 2456999999999974
No 380
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.73 E-value=1.7e+02 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=21.7
Q ss_pred ceEEEeeh------HhHHHHHHHhCCchhhhhhh
Q 032013 116 AFILFVDL------FCFMYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 116 ~~l~~eDs------~~gi~aa~~ag~~~~~~~~~ 143 (149)
.+||-=|| ..=+.||...|+++||.+|=
T Consensus 199 ~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 199 DAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred CEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 45666566 55678999999999999884
No 381
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.59 E-value=58 Score=24.76 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.+|++|.+++.+|+.+...
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 3678899999999999999999987665
No 382
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=34.45 E-value=1.2e+02 Score=24.88 Aligned_cols=85 Identities=9% Similarity=0.053 Sum_probs=46.9
Q ss_pred HHHHHHHHHH--CCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC-ChhHHHHHHhh--CCCcceEEEeehHhHH
Q 032013 53 AKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC-CIMCIIFFLFF--FSISAFILFVDLFCFM 127 (149)
Q Consensus 53 ~~e~L~~Lk~--~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p-~p~~~i~~~~~--~~~~~~l~~eDs~~gi 127 (149)
..++++.+++ .+.++.++-+++.....+...+..++.+.+... +..| +....+|.... +-|+. .|=.+.-+
T Consensus 211 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~-G~~~~~~~~~~l~~ad~~v~pS~---~E~~g~~~ 286 (398)
T cd03796 211 LVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELL-GAVPHERVRDVLVQGHIFLNTSL---TEAFCIAI 286 (398)
T ss_pred HHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEe-CCCCHHHHHHHHHhCCEEEeCCh---hhccCHHH
Confidence 3455555544 357777766554332246777888887654432 3333 33344444422 22221 24334567
Q ss_pred HHHHHhCCchhhhh
Q 032013 128 YAAAYVGCDLYVYK 141 (149)
Q Consensus 128 ~aa~~ag~~~~~~~ 141 (149)
.-|.+.|+++|+..
T Consensus 287 ~EAma~G~PVI~s~ 300 (398)
T cd03796 287 VEAASCGLLVVSTR 300 (398)
T ss_pred HHHHHcCCCEEECC
Confidence 88899999998754
No 383
>PRK02947 hypothetical protein; Provisional
Probab=34.41 E-value=49 Score=25.91 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCc
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
.+.+.++++.++++|.+++.+|+.+.
T Consensus 119 t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 119 NPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 46788999999999999999999863
No 384
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.40 E-value=1.2e+02 Score=22.29 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=35.6
Q ss_pred hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCC
Q 032013 7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSP 74 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~ 74 (149)
-+++|.-.+......+..+++|++.+-.. .....+..+++++++.|. +++|=|+..
T Consensus 69 a~~eA~~f~~~~~~~~~~~~lD~E~~~~~------------~~~~~~~~f~~~v~~~g~~~~~lYt~~~ 125 (177)
T cd06523 69 AKAEARDFYNRANKKPTFYVLDVEVTSMS------------DMNAGVQAFISELRRLGAKKVGLYIGHH 125 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEeeccCCcc------------hHHHHHHHHHHHHHHccCCcEEEEchHH
Confidence 34455444333332456688999975321 234567899999999876 677888764
No 385
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=34.36 E-value=1.1e+02 Score=20.82 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.+...+..+++++.|+.++-+|..+... +....+..++.
T Consensus 43 ~~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~ 81 (140)
T cd03017 43 ACDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCC
Confidence 4566677788888899999998777777 68888887764
No 386
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=34.31 E-value=39 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHHCCceEEEEe
Q 032013 51 PHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
+.+.+..++|+++|++++.+|
T Consensus 95 ~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 95 EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 467889999999999999999
No 387
>PRK13936 phosphoheptose isomerase; Provisional
Probab=34.18 E-value=55 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s~ 151 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGGK 151 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4678899999999999999999976655
No 388
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=34.15 E-value=57 Score=26.83 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=46.7
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHH--HHHHhhCCCcceEEEeehHhHH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCI--IFFLFFFSISAFILFVDLFCFM 127 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~--i~~~~~~~~~~~l~~eDs~~gi 127 (149)
.|=+..+.++|+++|++++|+|.+-... .. +....++. ...|+--+| ..++..++ -.-+|=+|-..|+
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~~-~~------~~~~~v~~--~~~~~~~GDEp~lla~~~~-~~V~V~~dR~~~~ 120 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGRK-SK------GEPILVSD--GSDAEEVGDEPLLLARKLP-VPVIVGPDRVAAA 120 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCCC-CC------CCeEEEeC--CCChhhhcCHHHHHHHhcC-CcEEEeCcHHHHH
Confidence 3677888999999999999999664433 11 10000111 111111111 22223333 3346666988999
Q ss_pred HHHHHh-CCchhhh
Q 032013 128 YAAAYV-GCDLYVY 140 (149)
Q Consensus 128 ~aa~~a-g~~~~~~ 140 (149)
+++.+. +++++|.
T Consensus 121 ~~~~~~~~~dviil 134 (326)
T PF02606_consen 121 RAALKEFPADVIIL 134 (326)
T ss_pred HHHHHHCCCCEEEE
Confidence 988887 5888774
No 389
>PRK08444 hypothetical protein; Provisional
Probab=34.05 E-value=52 Score=27.38 Aligned_cols=41 Identities=15% Similarity=-0.018 Sum_probs=24.6
Q ss_pred EecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEE
Q 032013 27 FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVA 68 (149)
Q Consensus 27 fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~ 68 (149)
=|++||+++-++. +.-+......+...++.+.+++.|...+
T Consensus 301 ~D~ggt~~~e~i~-~~ag~~~~~~~~~~~l~~~i~~~g~~p~ 341 (353)
T PRK08444 301 NDLDGTIEKESIQ-SAAGAKSANGLSLEDFIFLIKDSGFIPV 341 (353)
T ss_pred ccCccccccccch-hhccCCCCCCCCHHHHHHHHHHcCCCee
Confidence 3999999984332 1112112224566788888888887544
No 390
>PRK14557 pyrH uridylate kinase; Provisional
Probab=33.94 E-value=1.1e+02 Score=24.12 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=22.1
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
.+++.+++.|+++.|++++.... +...++.
T Consensus 200 ~A~~~a~~~gi~v~I~ng~~~~~-l~~~l~g 229 (247)
T PRK14557 200 AALLLARDYNLPAHVFNFDEPGV-MRRICLG 229 (247)
T ss_pred HHHHHHHHCCCcEEEEeCCCChH-HHHHHcC
Confidence 34466777899999999988777 4666653
No 391
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=33.85 E-value=1e+02 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=12.4
Q ss_pred EEeehHhHHHHHHHhCCch
Q 032013 119 LFVDLFCFMYAAAYVGCDL 137 (149)
Q Consensus 119 ~~eDs~~gi~aa~~ag~~~ 137 (149)
-+|+....+..++.+|+++
T Consensus 156 s~~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 156 TYDDRVDTLENAKKAGLKV 174 (296)
T ss_pred CHHHHHHHHHHHHHcCCEE
Confidence 3456666677777777764
No 392
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=33.76 E-value=79 Score=20.64 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=21.1
Q ss_pred cHHHhHHHHHhhhhccCCCccEEEEecCCccccc
Q 032013 3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF 36 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~ 36 (149)
.|++++.++.+...... .+-.++++=|||.++.
T Consensus 22 sL~eL~~K~~~~l~~~~-~~~~lvL~eDGT~Vdd 54 (78)
T PF02017_consen 22 SLEELLEKACDKLQLPE-EPVRLVLEEDGTEVDD 54 (78)
T ss_dssp SHHHHHHHHHHHHT-SS-STCEEEETTTTCBESS
T ss_pred CHHHHHHHHHHHhCCCC-cCcEEEEeCCCcEEcc
Confidence 36677777755433322 3445788999999984
No 393
>PRK06256 biotin synthase; Validated
Probab=33.73 E-value=2.5e+02 Score=22.61 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHH
Q 032013 51 PHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYA 129 (149)
Q Consensus 51 pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~a 129 (149)
+.+.++++.+++. ++.+.+-.+....+ ....++..|+..+... ..++| .+|-... +. .-+||....++.
T Consensus 126 ~~~~e~i~~i~~~~~i~~~~~~g~l~~e-~l~~LkeaG~~~v~~~---lEts~--~~~~~i~--~~--~t~~~~i~~i~~ 195 (336)
T PRK06256 126 DQVVEAVKAIKEETDLEICACLGLLTEE-QAERLKEAGVDRYNHN---LETSR--SYFPNVV--TT--HTYEDRIDTCEM 195 (336)
T ss_pred HHHHHHHHHHHhcCCCcEEecCCcCCHH-HHHHHHHhCCCEEecC---CccCH--HHHhhcC--CC--CCHHHHHHHHHH
Confidence 5677888888876 34443322333445 4677888887654332 22345 5554433 22 246888889999
Q ss_pred HHHhCCchh
Q 032013 130 AAYVGCDLY 138 (149)
Q Consensus 130 a~~ag~~~~ 138 (149)
++.+|+++.
T Consensus 196 a~~~Gi~v~ 204 (336)
T PRK06256 196 VKAAGIEPC 204 (336)
T ss_pred HHHcCCeec
Confidence 999998753
No 394
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=33.67 E-value=1.9e+02 Score=23.06 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR 72 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~ 72 (149)
...+.+|.|=+--..+..+.-+. ..+|+..+++++|+++|+++++..+
T Consensus 40 ~d~~~lD~~w~~~~~~~~f~~d~---~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 40 CDVIHLDCFWMKEFQWCDFEFDP---DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred eeEEEEecccccCCcceeeEECc---ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 45688888765211111222222 3678899999999999999998764
No 395
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=33.43 E-value=86 Score=28.95 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=34.5
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTF 82 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~ 82 (149)
+.+++++|-|||++. +... .....|+.|-.. +=.+.|+|++.+.. ....
T Consensus 502 ~~rli~ldyd~t~~~------~~~~------~~~~~l~~L~~dp~n~v~i~s~~~r~~-l~~~ 551 (732)
T KOG1050|consen 502 KKRLILLDYDLTLIP------PRSI------KAISILKDLCSDPKNIVYIVSGRGRSV-LEKW 551 (732)
T ss_pred cceEEEecccccccC------CCCc------hHHHHHHHHhcCCCCeEEEEEccCchh-hhhh
Confidence 468999999999997 3321 167778777666 45677888888776 3443
No 396
>PRK11778 putative inner membrane peptidase; Provisional
Probab=33.34 E-value=1.8e+02 Score=24.19 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.6
Q ss_pred CccEEEEecCCccccc
Q 032013 21 LPRLVVFDLDYTLWPF 36 (149)
Q Consensus 21 ~~k~vifDlDGTLld~ 36 (149)
.++..+.|++|++..+
T Consensus 89 ~~~v~VI~~~G~I~~~ 104 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS 104 (330)
T ss_pred CCeEEEEEEEEEECCC
Confidence 4789999999999864
No 397
>PRK10307 putative glycosyl transferase; Provisional
Probab=33.18 E-value=1.2e+02 Score=24.78 Aligned_cols=81 Identities=6% Similarity=0.003 Sum_probs=43.6
Q ss_pred HHHHHHHHC-CceEEEEeCCCc-hHHHHHHHHHcCCCCCcccccccCCC-hhHHHHHHhh--CCCcceEEEee----hHh
Q 032013 55 GILEALKEK-GIHVAVASRSPA-PDIAKTFLHKLGIHSMFVPMVRLSCC-IMCIIFFLFF--FSISAFILFVD----LFC 125 (149)
Q Consensus 55 e~L~~Lk~~-Gi~i~IaT~~~~-~~i~~~~l~~~gl~~~f~~~~~~~p~-p~~~i~~~~~--~~~~~~l~~eD----s~~ 125 (149)
++++.+++. ++++.|+-.++. .. .+...+..++.. +.. .++-|. -.+.++.... +-|+. -|. .|+
T Consensus 249 ~a~~~l~~~~~~~l~ivG~g~~~~~-l~~~~~~~~l~~-v~f-~G~~~~~~~~~~~~~aDi~v~ps~---~e~~~~~~p~ 322 (412)
T PRK10307 249 DAARRLRDRPDLIFVICGQGGGKAR-LEKMAQCRGLPN-VHF-LPLQPYDRLPALLKMADCHLLPQK---AGAADLVLPS 322 (412)
T ss_pred HHHHHhccCCCeEEEEECCChhHHH-HHHHHHHcCCCc-eEE-eCCCCHHHHHHHHHhcCEeEEeec---cCcccccCcH
Confidence 444445433 477777765543 44 466677777753 222 233333 2334444422 22211 122 477
Q ss_pred HHHHHHHhCCchhhhh
Q 032013 126 FMYAAAYVGCDLYVYK 141 (149)
Q Consensus 126 gi~aa~~ag~~~~~~~ 141 (149)
-+..|.++|++++...
T Consensus 323 kl~eama~G~PVi~s~ 338 (412)
T PRK10307 323 KLTNMLASGRNVVATA 338 (412)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 7889999999998753
No 398
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.11 E-value=1.4e+02 Score=23.34 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=49.6
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc--ccc-ccc-----CCChhHHHHHHhhCCCcceEEE
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPM-VRL-----SCCIMCIIFFLFFFSISAFILF 120 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f--~~~-~~~-----~p~p~~~i~~~~~~~~~~~l~~ 120 (149)
......++++++|++|.+++++-+-... ++.+......-+.. =.+ .++ -++-|+.+...+. -..-+.+
T Consensus 97 ~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~--kyp~l~i 172 (224)
T KOG3111|consen 97 ATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLRE--KYPNLDI 172 (224)
T ss_pred eccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHH--hCCCceE
Confidence 4455789999999999999999854432 23333333322211 111 122 2333334443331 1233666
Q ss_pred e-e---hHhHHHHHHHhCCchhhh
Q 032013 121 V-D---LFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 121 e-D---s~~gi~aa~~ag~~~~~~ 140 (149)
| | .+.-|..+..||+..+|.
T Consensus 173 evDGGv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 173 EVDGGVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred EecCCcCcchHHHHHHcCCCEEEe
Confidence 5 5 355578888999998885
No 399
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=33.06 E-value=61 Score=25.37 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=24.3
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+++...
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNA 215 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 4677889999999999999999987666
No 400
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=33.02 E-value=1.6e+02 Score=24.07 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=30.6
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
...+.+|+|-+ +.+..+.=+ ...+|+..++++.|+++|+++.+..
T Consensus 40 ~d~i~lD~~~~--~~~~~f~~d---~~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 40 CDAIYLDIDYM--DGYRVFTWD---KERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred cceEEECchhh--CCCCceeec---cccCCCHHHHHHHHHHCCCEEEEEE
Confidence 46788888754 222221111 1367889999999999999998654
No 401
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=33.01 E-value=5 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
|+.++|++.|++.+-+|.+.+.. ....|.+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~v-Y~kkL~k 39 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKV-YEKKLAK 39 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHH-HHHHCHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHH-HHHHHHH
Confidence 56678889999999999998876 5666554
No 402
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=32.87 E-value=76 Score=21.11 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=30.4
Q ss_pred ecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 28 DLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 28 DlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
+..|+|+.- +.-+.....+..+..+++.+++|+++-++++..
T Consensus 39 ~~~~~l~EV-----KNV~~~s~t~Qlr~~~~~A~~~G~~~~Lvv~~~ 80 (87)
T PF15649_consen 39 KNNGQLVEV-----KNVKYQSLTKQLRDYVKYAKENGYRFNLVVNHR 80 (87)
T ss_pred cCCCcEEEE-----echhhccchHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 445666653 333334567778888999999999999999854
No 403
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=64 Score=24.80 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=23.0
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
..++..++++.++++|+++.+=||++...
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~~ 112 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIPV 112 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCccc
Confidence 34578889999999999999999876543
No 404
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=32.72 E-value=1.1e+02 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=26.8
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.+++.++.+.|.+.|+++. +|++. ...|+..|+.
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgGT-----ak~L~e~GI~ 43 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGGT-----AKLLAEAGVP 43 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-EechH-----HHHHHHCCCe
Confidence 4788999999999999994 88774 4456777763
No 405
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.63 E-value=43 Score=21.54 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCc
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
....++++.|+++|+++.+.|++..
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHH
Confidence 4477999999999999998887653
No 406
>PRK10671 copA copper exporting ATPase; Provisional
Probab=32.47 E-value=27 Score=32.26 Aligned_cols=20 Identities=25% Similarity=-0.021 Sum_probs=16.5
Q ss_pred CCCccEEEEecCCccccccc
Q 032013 19 ENLPRLVVFDLDYTLWPFYC 38 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~ 38 (149)
...++.++||-+|||+.+..
T Consensus 514 l~~v~~v~fDKTGTLT~g~~ 533 (834)
T PRK10671 514 ASTLDTLVFDKTGTLTEGKP 533 (834)
T ss_pred hcCCCEEEEcCCCccccCce
Confidence 44588999999999998743
No 407
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=32.44 E-value=78 Score=27.41 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEe-ehHhHHH-HHHH
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFV-DLFCFMY-AAAY 132 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~e-Ds~~gi~-aa~~ 132 (149)
.++..|=.+|+-++.-||+.++.+.+.-+++..+ -| .|-+.. +.|-|++ ||++.-+ +|++
T Consensus 215 rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F------------~P--fI~~L~----~rc~vi~ldS~vDYR~~~~~ 276 (467)
T KOG2383|consen 215 RLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENF------------IP--FIALLE----ERCKVIQLDSGVDYRRKAKS 276 (467)
T ss_pred HHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhh------------hh--HHHHHH----HhheEEecCCccchhhccCC
Confidence 5667788889877766677766643333332221 12 222221 3776777 9988887 5555
Q ss_pred hCCchh
Q 032013 133 VGCDLY 138 (149)
Q Consensus 133 ag~~~~ 138 (149)
+|=..+
T Consensus 277 ~~~~~y 282 (467)
T KOG2383|consen 277 AGENYY 282 (467)
T ss_pred CCceeE
Confidence 554333
No 408
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.38 E-value=78 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHCCceEEEEeCC
Q 032013 51 PHAKGILEALKEKGIHVAVASRS 73 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~ 73 (149)
+.+++.++.++++|+.-+.++..
T Consensus 134 ~~v~~~~~~l~~~gv~avAV~~~ 156 (176)
T PF05378_consen 134 DEVREALRELKDKGVEAVAVSLL 156 (176)
T ss_pred HHHHHHHHHHHhCCCCEEEEECc
Confidence 46779999999999998888843
No 409
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=32.38 E-value=78 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.|.+.+.++.++++|.+++.+|+++...
T Consensus 131 T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 131 TPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4788999999999999999999988766
No 410
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=32.30 E-value=72 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.+.++.++++|.+++.+|+.+...
T Consensus 102 t~~~~~~~~~ak~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 102 AKELDLIIPRLEDKSIALLAMTGKPTSP 129 (321)
T ss_pred cHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 4678899999999999999999987655
No 411
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=32.07 E-value=1e+02 Score=20.15 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=18.4
Q ss_pred CCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 63 KGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 63 ~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.+..++.++....+. ....++..++.
T Consensus 52 ~~~~vi~v~~~~~~~-~~~~~~~~~~~ 77 (114)
T cd02967 52 DWLDVVLASDGEKAE-HQRFLKKHGLE 77 (114)
T ss_pred CCcEEEEEeCCCHHH-HHHHHHHhCCC
Confidence 457777777666666 67888888874
No 412
>PRK15482 transcriptional regulator MurR; Provisional
Probab=32.05 E-value=73 Score=25.16 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=25.3
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLADSP 222 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 44788899999999999999999988766
No 413
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=31.73 E-value=1.1e+02 Score=20.07 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=30.8
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCC-ceEEEEeCC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRS 73 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~ 73 (149)
.|+|--||+.+-.. .+.....-.+...+.++.|++.| .++.+|..+
T Consensus 38 ~v~~~g~gv~~~~~----~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~~~ 84 (122)
T PF02635_consen 38 VVFFHGDGVKLALK----DQKPNPEGDPPLQELLKELKEAGGVKIYVCETC 84 (122)
T ss_dssp EEEE-GGGGGGGBT----TCHCGGCTSHCHHHHHHHHHHTTT-EEEEEHHH
T ss_pred EEEEEchHHHHHHh----cccccccccccHHHHHHHHHhcCCcEEEEcHHH
Confidence 38889999988631 00111234577889999999997 999987643
No 414
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=31.71 E-value=80 Score=24.98 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=23.3
Q ss_pred ccCccH-HHHHHHHHHCCceEEEEeCCCc
Q 032013 48 YLYPHA-KGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 48 ~~~pg~-~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
.+.+.. .+++++++++|+.+.+.||+..
T Consensus 137 ll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 137 LLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 356665 5999999999999999999854
No 415
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=31.48 E-value=2.4e+02 Score=22.71 Aligned_cols=68 Identities=25% Similarity=0.263 Sum_probs=51.0
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI 102 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p 102 (149)
++++.=+.|..+.. + .+++...+-+..|+..|.+.+|+=|..+ . +...++++|+...|...-...+..
T Consensus 3 k~~VIK~GG~~~~~------~----~l~~~~~~di~lL~~~G~~~VvVHGggp-~-I~~~l~~~gie~~f~~glRvTd~~ 70 (265)
T COG0548 3 KTIVIKLGGSAMED------E----NLLEAFASDIALLKSVGIRPVVVHGGGP-Q-IDEMLAKLGIEPEFVKGLRVTDAE 70 (265)
T ss_pred ceEEEEECceeecC------c----hHHHHHHHHHHHHHHCCCcEEEEeCCch-H-HHHHHHHcCCCCeeeCCEEcCCHH
Confidence 56788888888862 1 3567778888999999999988877754 4 689999999988776554443333
No 416
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=31.39 E-value=75 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=24.9
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+++.++++.++++|.+++.+||.+...
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 3688899999999999999999987665
No 417
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=31.23 E-value=81 Score=25.55 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=44.7
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeeh
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDL 123 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs 123 (149)
+..+.++++|..+.=+|----.. +....+++.-..|..-+.+-+.|| .+-...+.-+..++++|+.
T Consensus 79 ~~~~~~~~~gl~viDaTCP~V~k-v~~~v~~~~~~Gy~iiiiG~~~Hp--Ev~gi~g~~~~~~~vv~~~ 144 (280)
T TIGR00216 79 EVREELEKKGLEVIDATCPLVTK-VHNAVKKYAKEGYHVILIGKKNHP--EVIGTRGYAPDKAIVVETL 144 (280)
T ss_pred HHHHHHHHCCCeEEeCCCcccHH-HHHHHHHHHhCCCEEEEEeCCCCC--eeeeeccCcCCCEEEECCH
Confidence 67778888888877666655555 566666665566766667778888 5555556555667777754
No 418
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=31.13 E-value=3.5e+02 Score=23.37 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEe-e-hHh
Q 032013 52 HAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFV-D-LFC 125 (149)
Q Consensus 52 g~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~e-D-s~~ 125 (149)
-+..+++++++. ++++.+.|.++... +..-+.++-. ..+.|=|-..+..--. ..+.|+-+|+.| + =||
T Consensus 64 a~~pLv~~l~~~~P~~~ilvTt~T~Tg~--e~a~~~~~~~----v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPn 137 (419)
T COG1519 64 AALPLVRALRERFPDLRILVTTMTPTGA--ERAAALFGDS----VIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPN 137 (419)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCccHH--HHHHHHcCCC----eEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHH
Confidence 345788999998 88888888776543 4444444421 2344444332222221 457888999999 3 489
Q ss_pred HHHHHHHhCCchhhh
Q 032013 126 FMYAAAYVGCDLYVY 140 (149)
Q Consensus 126 gi~aa~~ag~~~~~~ 140 (149)
-|..++++|+++++.
T Consensus 138 li~e~~~~~~p~~Lv 152 (419)
T COG1519 138 LINELKRRGIPLVLV 152 (419)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999885
No 419
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=31.08 E-value=85 Score=24.80 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.+.+.++++.++++|.+++.+|+.+...
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 3678899999999999999999988766
No 420
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=31.08 E-value=86 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..-||-...=+.|.+.+++.+|++..+... +..-+++.|+.
T Consensus 71 paaPGP~kARE~l~~s~~PaiiigDaPg~~-vkdeleeqGlG 111 (277)
T COG1927 71 PAAPGPKKAREILSDSDVPAIIIGDAPGLK-VKDELEEQGLG 111 (277)
T ss_pred CCCCCchHHHHHHhhcCCCEEEecCCccch-hHHHHHhcCCe
Confidence 345676777777888999999999999888 78889998874
No 421
>PTZ00056 glutathione peroxidase; Provisional
Probab=30.87 E-value=67 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=39.7
Q ss_pred CccEEEEecCCccccc------------cccccccCCCCccCccHHHHHHHHHHCCceEEEEeC--------CCchHHHH
Q 032013 21 LPRLVVFDLDYTLWPF------------YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR--------SPAPDIAK 80 (149)
Q Consensus 21 ~~k~vifDlDGTLld~------------~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~--------~~~~~i~~ 80 (149)
.+..-+-|+||.-+.. |..|++-. ....|...++.++.+++|+.+.-++. ...+. +.
T Consensus 19 ~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C--~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~-~~ 95 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLT--KKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKD-IR 95 (199)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCCh--HHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHH-HH
Confidence 3566667888864432 22222211 12345666677777778988877763 23355 67
Q ss_pred HHHHHcCCCC
Q 032013 81 TFLHKLGIHS 90 (149)
Q Consensus 81 ~~l~~~gl~~ 90 (149)
..++..++.-
T Consensus 96 ~f~~~~~~~f 105 (199)
T PTZ00056 96 KFNDKNKIKY 105 (199)
T ss_pred HHHHHcCCCc
Confidence 8888888753
No 422
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=30.85 E-value=81 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..+-+.|+++|+.+.++|+.... ...+..|+.
T Consensus 16 lala~~L~~rGh~V~~~~~~~~~----~~v~~~Gl~ 47 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPDFR----ERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGGGH----HHHHHTT-E
T ss_pred HHHHHHHhccCCeEEEeecccce----ecccccCce
Confidence 46778999999999999997643 344778875
No 423
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=30.72 E-value=80 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
+.+.+.++.+.++|.++++.|.+-..+ ....++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~~~~-~~~~l~~~ 112 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGFSDE-QIDELEEL 112 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSSHHH-HHHHHHHH
T ss_pred HHhHHHHHHHHhCCCCEEEECCCCCHH-HHHHHHHH
Confidence 466688999999999999999887665 45666654
No 424
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=30.55 E-value=93 Score=23.96 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=47.8
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCce--EEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH--VAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC 100 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~--i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p 100 (149)
.+++.|+-+-++++.....+.++ ....+..+.+.|+.+.+. .+|+|---.+.--..++.+..-...........+
T Consensus 3 ~l~vvd~qndfi~~~~~~~s~~E---~~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~ 79 (223)
T KOG4003|consen 3 TLIVVDMQNDFISPLGSLTSVPE---GEELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSP 79 (223)
T ss_pred eEEEEeccccccccccccccCCC---chhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCcccCC
Confidence 46788988888875333222222 222333566777777776 8899954332201233333332222333344455
Q ss_pred ChhHHHHHHhhCCCcceE
Q 032013 101 CIMCIIFFLFFFSISAFI 118 (149)
Q Consensus 101 ~p~~~i~~~~~~~~~~~l 118 (149)
.|...++....+.|..|+
T Consensus 80 ~~~d~V~~~~vl~p~HCv 97 (223)
T KOG4003|consen 80 RPGDDVTQEGILWPVHCV 97 (223)
T ss_pred CcCCchheeeecchhhhh
Confidence 555556555445554443
No 425
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=30.53 E-value=42 Score=24.13 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=33.9
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
-+..++.++=+.|++.|+++.+..|.+... ...+.+..++...+
T Consensus 50 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~-l~~l~~~~~~~~V~ 93 (165)
T PF00875_consen 50 FLLESLADLQESLRKLGIPLLVLRGDPEEV-LPELAKEYGATAVY 93 (165)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEESSHHHH-HHHHHHHHTESEEE
T ss_pred HHHHHHHHHHHHHHhcCcceEEEecchHHH-HHHHHHhcCcCeeE
Confidence 455666677788899999999999998777 58888888876544
No 426
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=30.43 E-value=82 Score=24.34 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=25.4
Q ss_pred cCccHHHHHHHHHHCCceEEE-----EeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAV-----ASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~I-----aT~~~~~~i~~~~l~~~gl~ 89 (149)
..++-.+.|+.|+++|++++. -||++|.+-+...+-+.|-+
T Consensus 38 ~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSvlW~~G~d 83 (204)
T PF06434_consen 38 RRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSVLWHMGED 83 (204)
T ss_dssp -BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEE
T ss_pred ccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhhhhhccCC
Confidence 446678899999999999975 47888887234455555543
No 427
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.26 E-value=1.4e+02 Score=24.13 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=45.0
Q ss_pred ccCccHHHHHHHHHH-CCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHh
Q 032013 48 YLYPHAKGILEALKE-KGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFC 125 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~-~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~ 125 (149)
.+.+++.++++.+++ .|+ .+.+.||...-.-....+...|+...-.... ..+| ..|.+.. +. --.|+....
T Consensus 71 ll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld--~~~~--~~~~~i~-~~--~~~~~~vl~ 143 (334)
T TIGR02666 71 LLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLD--SLDP--ERFAKIT-RR--GGRLEQVLA 143 (334)
T ss_pred cccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecc--cCCH--HHhheeC-CC--CCCHHHHHH
Confidence 355788899999887 588 8999998864210234455566643221211 2233 3333321 00 013555666
Q ss_pred HHHHHHHhCCc
Q 032013 126 FMYAAAYVGCD 136 (149)
Q Consensus 126 gi~aa~~ag~~ 136 (149)
+|.++.++|.+
T Consensus 144 ~i~~l~~~G~~ 154 (334)
T TIGR02666 144 GIDAALAAGLE 154 (334)
T ss_pred HHHHHHHcCCC
Confidence 66666666654
No 428
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=29.97 E-value=63 Score=26.00 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=25.1
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+++...
T Consensus 106 ~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 106 ESSEILALIPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 34788899999999999999999987655
No 429
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=29.96 E-value=1.8e+02 Score=23.93 Aligned_cols=83 Identities=14% Similarity=0.034 Sum_probs=43.8
Q ss_pred CccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHH
Q 032013 50 YPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~ 128 (149)
...+.++|+.|.+. ++++++.-.+.... ...+.+.+.- + +.+...+|-+-..+..... ...+++=||- ||+
T Consensus 199 ~~~i~~~l~~L~~~~~~~vi~~~hn~p~~-~~~i~~~l~~--~-~~v~~~~~l~~~~~l~ll~---~a~~vvgdSs-GI~ 270 (346)
T PF02350_consen 199 LEQILEALKALAERQNVPVIFPLHNNPRG-SDIIIEKLKK--Y-DNVRLIEPLGYEEYLSLLK---NADLVVGDSS-GIQ 270 (346)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--S-HHH-HHHHHHHHTT----TTEEEE----HHHHHHHHH---HESEEEESSH-HHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCchH-HHHHHHHhcc--c-CCEEEECCCCHHHHHHHHh---cceEEEEcCc-cHH
Confidence 34667888888887 77777665543333 2344333332 2 2334445544222222222 1337788999 999
Q ss_pred -HHHHhCCchhhh
Q 032013 129 -AAAYVGCDLYVY 140 (149)
Q Consensus 129 -aa~~ag~~~~~~ 140 (149)
-|..-|.+++..
T Consensus 271 eEa~~lg~P~v~i 283 (346)
T PF02350_consen 271 EEAPSLGKPVVNI 283 (346)
T ss_dssp HHGGGGT--EEEC
T ss_pred HHHHHhCCeEEEe
Confidence 999999999887
No 430
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=29.84 E-value=1.5e+02 Score=19.07 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=27.8
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
...-++|-||+.+. + -...++++..++.|.-++.++.+.
T Consensus 13 ~~VrlI~~~g~~lG-------------v-~~~~eAl~~A~~~~lDLV~v~~~~ 51 (76)
T PF05198_consen 13 PEVRLIDEDGEQLG-------------V-MSLREALRLAKEKGLDLVEVSPNA 51 (76)
T ss_dssp SEEEEE-TTS-EEE-------------E-EEHHHHHHHHHHTT-EEEEEETTS
T ss_pred CEEEEECCCCcEec-------------e-EEHHHHHHHHHHcCCcEEEEcCCC
Confidence 45567799999885 2 256799999999999999999554
No 431
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=29.80 E-value=24 Score=25.27 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred CCCccEEEEecCCcccccccccccc-------CCCC-ccCccHHHHHHHHHHCCceEEEEeC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYE-------DEIP-YLYPHAKGILEALKEKGIHVAVASR 72 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~-------~~~~-~~~pg~~e~L~~Lk~~Gi~i~IaT~ 72 (149)
.+.|..+.||+.+||-.+.-..... .... ....-..+.|+.....+.-++++|.
T Consensus 42 ~~~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~~VILVsp 103 (128)
T PRK13717 42 LNAPVTAAFNMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVSP 103 (128)
T ss_pred cCCCeEEEEehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEech
Confidence 4569999999999987641110000 0000 1111223456666666677777774
No 432
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.59 E-value=3.5e+02 Score=22.89 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHH-------------HHHHHHHcCCCCCcccccccCCChhHHHHHH---hhCCCc-c
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDI-------------AKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL---FFFSIS-A 116 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i-------------~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~---~~~~~~-~ 116 (149)
.++.+.|+++|+++.++.....+.. -...+++.|+.+ .+..-...++...-++.. ..++|+ .
T Consensus 253 ~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~-A~aVI~~t~dD~~Nl~ivL~ar~l~p~~k 331 (393)
T PRK10537 253 INTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAAR-ARAILALRDNDADNAFVVLAAKEMSSDVK 331 (393)
T ss_pred HHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCccc-CCEEEEcCCChHHHHHHHHHHHHhCCCCc
Confidence 4677778888888877764321110 023344444432 122222233433333332 446664 3
Q ss_pred eEEEeehHhHHHHHHHhCCchhhhh
Q 032013 117 FILFVDLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 117 ~l~~eDs~~gi~aa~~ag~~~~~~~ 141 (149)
.++--+++-...-.+++|.+.++..
T Consensus 332 IIa~v~~~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 332 TVAAVNDSKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred EEEEECCHHHHHHHHhcCCCEEECH
Confidence 3443455555677778888877654
No 433
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=29.48 E-value=1.4e+02 Score=24.63 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhH-HHHHHhhCCCcceEEEeehHhHHHH
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMC-IIFFLFFFSISAFILFVDLFCFMYA 129 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~-~i~~~~~~~~~~~l~~eDs~~gi~a 129 (149)
|-+..+.++|+++|++++|+|.+-... .. +-....+. ...|+-.+ +-++.....-...+|-+|-..+.+.
T Consensus 66 P~v~~L~~~l~~~g~~~~ilsRGYg~~-~~------~~~~~v~~--~~~~~~~GDEp~lla~~~~~~V~V~~dR~~~~~~ 136 (325)
T PRK00652 66 PVVIALAEQLQARGLKPGVVSRGYGGK-LE------KGPLLVDP--DHTAAEVGDEPLLIARRTGAPVAVSPDRVAAARA 136 (325)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCCC-cC------CCCEEeCC--CCChhhhCcHHHHhccCCCceEEEcCcHHHHHHH
Confidence 667788899999999999999553322 00 00000111 11111111 1122211111234666688889888
Q ss_pred HHHh-CCchhhhh
Q 032013 130 AAYV-GCDLYVYK 141 (149)
Q Consensus 130 a~~a-g~~~~~~~ 141 (149)
+... |+++++..
T Consensus 137 ~~~~~~~dviilD 149 (325)
T PRK00652 137 LLAAHGADIIILD 149 (325)
T ss_pred HHhcCCCCEEEEc
Confidence 8876 89988753
No 434
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=29.40 E-value=56 Score=22.36 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC--CceEEEEeCCC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSP 74 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~--Gi~i~IaT~~~ 74 (149)
...+.+|++|+|++.. ....++++.++++ ++|+.+++.+.
T Consensus 36 ~~~i~avvi~~d~~~~----------------~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWDGEEE----------------DEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECHHHHH----------------HHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcccccc----------------hhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 4557889999992222 2445677776664 79999999976
No 435
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=29.35 E-value=69 Score=28.09 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=44.0
Q ss_pred CCCccEEE-EecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 19 ENLPRLVV-FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 19 ~~~~k~vi-fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
..+||+|+ ||==.-|.+. ..+ .+.+.+.++.+..+.+|+-+.++|-+|.+- =..+|.++|-
T Consensus 252 ~dkPklVfFfDEAHLLF~d-----a~k---all~~ieqvvrLIRSKGVGv~fvTQ~P~Di-P~~VL~QLGn 313 (502)
T PF05872_consen 252 LDKPKLVFFFDEAHLLFND-----APK---ALLDKIEQVVRLIRSKGVGVYFVTQNPTDI-PDDVLGQLGN 313 (502)
T ss_pred CCCceEEEEEechhhhhcC-----CCH---HHHHHHHHHHHHhhccCceEEEEeCCCCCC-CHHHHHhhhh
Confidence 34588755 6877766652 111 356677888999999999999999998765 4677777763
No 436
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=29.27 E-value=68 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=24.8
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
-.+.+.++++.++++|.+++.+|+.+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 87 (268)
T TIGR00393 59 ESLELLNLIPHLKRLSHKIIAFTGSPNSS 87 (268)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence 34688899999999999999999986555
No 437
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=29.24 E-value=2.2e+02 Score=21.95 Aligned_cols=90 Identities=10% Similarity=-0.077 Sum_probs=46.1
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC-CCCCcccccccCCChh-HHHHHHh--hCCCcceEEEeehH
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMFVPMVRLSCCIM-CIIFFLF--FFSISAFILFVDLF 124 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g-l~~~f~~~~~~~p~p~-~~i~~~~--~~~~~~~l~~eDs~ 124 (149)
...|...+++.++..++++.++-+.+.........+... +.+.+.. .+.-+... ..++... .+.|+. .-|=.+
T Consensus 182 ~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~d~~v~ps~--~~E~~~ 258 (335)
T cd03802 182 PEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEY-LGEVGGAEKAELLGNARALLFPIL--WEEPFG 258 (335)
T ss_pred cccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEE-eCCCCHHHHHHHHHhCcEEEeCCc--ccCCcc
Confidence 345777888888888999998887754331233333332 2221111 23333332 2333331 122211 113234
Q ss_pred hHHHHHHHhCCchhhhh
Q 032013 125 CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 125 ~gi~aa~~ag~~~~~~~ 141 (149)
.=+.-|.++|.++|+..
T Consensus 259 ~~~lEAma~G~PvI~~~ 275 (335)
T cd03802 259 LVMIEAMACGTPVIAFR 275 (335)
T ss_pred hHHHHHHhcCCCEEEeC
Confidence 44778888899888643
No 438
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=29.16 E-value=1.8e+02 Score=24.35 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred EEEEecCCccccccccccccCCCCccCccHH-----------------------HHHHHHHHCCceEEEEeCCCchHHHH
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAK-----------------------GILEALKEKGIHVAVASRSPAPDIAK 80 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~-----------------------e~L~~Lk~~Gi~i~IaT~~~~~~i~~ 80 (149)
.++.|+||.+.+ ++..+++.+.++...... +....+.+.|+++.|+++..... +.
T Consensus 166 iilTDVdGvy~~-dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~-l~ 243 (368)
T PRK13402 166 IILSDIDGLYDQ-NPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADI-FN 243 (368)
T ss_pred EEEecCCeEEeC-CCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchH-HH
Q ss_pred HHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEee
Q 032013 81 TFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVD 122 (149)
Q Consensus 81 ~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eD 122 (149)
..++.-..-.+|.......+.. ...++....|.=.|++.+
T Consensus 244 ~~l~g~~~GT~i~~~~~~~~~r--k~Wi~~~~~~~G~i~vd~ 283 (368)
T PRK13402 244 QLLKGQNPGTYFTPEEKPMQEK--KHWMAHTSGPQGEIVVEN 283 (368)
T ss_pred HHhcCCCCceEEecCCCCccHH--HHHHhCCCCCCeeEEECc
No 439
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.15 E-value=1.1e+02 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=28.2
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCc-----------hHHHHHHHHHcCCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPA-----------PDIAKTFLHKLGIHS 90 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~-----------~~i~~~~l~~~gl~~ 90 (149)
.-..+.+++++.+++|+.+.+-.+... +. +-..+++.|+..
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~-~f~~~~~~Gv~G 122 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDE-AFKLYAKWGVKG 122 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHH-HHHHHHHCTEEE
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHH-HHHHHHHcCCCE
Confidence 345778999999999999999887765 44 455666667643
No 440
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.08 E-value=2e+02 Score=24.21 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=29.3
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
...+.+|.|.+--.. .+.-+ ...+|+..++++.|+++|+++++-.
T Consensus 59 ~d~~~iD~~~~~~~~--~f~~d---~~~FPd~~~~~~~l~~~G~~~~~~~ 103 (441)
T PF01055_consen 59 LDVIWIDDDYQDGYG--DFTWD---PERFPDPKQMIDELHDQGIKVVLWV 103 (441)
T ss_dssp EEEEEE-GGGSBTTB--TT-B----TTTTTTHHHHHHHHHHTT-EEEEEE
T ss_pred ccceecccccccccc--ccccc---cccccchHHHHHhHhhCCcEEEEEe
Confidence 567888988544211 11111 2467899999999999999998766
No 441
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=29.01 E-value=1.8e+02 Score=25.31 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=49.6
Q ss_pred CccHH---HHHHHHHHC--CceEEEEeCCC-chHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh--hCCCcceEEEe
Q 032013 50 YPHAK---GILEALKEK--GIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF--FFSISAFILFV 121 (149)
Q Consensus 50 ~pg~~---e~L~~Lk~~--Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~--~~~~~~~l~~e 121 (149)
..|.. +++..+++. ++++.++-.++ ... .+...+..++.+.+.. .+. .+...+|... .+.|+. .|
T Consensus 331 ~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~-l~~~i~~~~l~~~V~f-~G~--~~~~~~~~~adv~v~pS~---~E 403 (500)
T TIGR02918 331 EKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQK-LQKIINENQAQDYIHL-KGH--RNLSEVYKDYELYLSAST---SE 403 (500)
T ss_pred ccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHH-HHHHHHHcCCCCeEEE-cCC--CCHHHHHHhCCEEEEcCc---cc
Confidence 34554 444455543 56666664443 345 5677788887664432 222 2444666652 233332 45
Q ss_pred ehHhHHHHHHHhCCchhhhh
Q 032013 122 DLFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 122 Ds~~gi~aa~~ag~~~~~~~ 141 (149)
--+.=+.-|.++|+++|.+.
T Consensus 404 gfgl~~lEAma~G~PVI~~d 423 (500)
T TIGR02918 404 GFGLTLMEAVGSGLGMIGFD 423 (500)
T ss_pred cccHHHHHHHHhCCCEEEec
Confidence 55666889999999999864
No 442
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=28.49 E-value=1.5e+02 Score=22.80 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 57 LEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 57 L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
++.+++.|+++.|++++.... +...++
T Consensus 196 ~~~a~~~gi~~~I~~g~~~~~-l~~~l~ 222 (231)
T cd04254 196 FTLCRDNNLPIVVFNINEPGN-LLKAVK 222 (231)
T ss_pred HHHHHHCCCeEEEEeCCCccH-HHHHHC
Confidence 566677899999988887776 466664
No 443
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=28.42 E-value=1.6e+02 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=31.6
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
.+..-+.|-||+++. +. ...++|+.+++.|.-++.++.+.
T Consensus 19 ~~~Vrli~~dG~~lg-------------v~-~~~eAl~~A~~~~lDLV~v~~~~ 58 (177)
T PRK00028 19 AREVRLIGDDGEQLG-------------IV-STREALELAEEAGLDLVEISPNA 58 (177)
T ss_pred CCEEEEECCCCcCCC-------------ce-eHHHHHHHHHHcCCCEEEECCCC
Confidence 356678899999885 22 56789999999999999998544
No 444
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.40 E-value=3.1e+02 Score=22.01 Aligned_cols=92 Identities=12% Similarity=-0.004 Sum_probs=54.0
Q ss_pred CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhH------------HHHHH---
Q 032013 45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMC------------IIFFL--- 109 (149)
Q Consensus 45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~------------~i~~~--- 109 (149)
.+..-.+...++.+.+++.|-++.+.||+..- ..+.+......++.- .-|.|++ .|.+.
T Consensus 109 d~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l---~~f~~~~~~~~~~~R---vlp~~~~~~~~~~~~~p~~~Iia~~GP 182 (257)
T COG2099 109 DNWIEVADIEEAAEAAKQLGRRVFLTTGRQNL---AHFVAADAHSHVLAR---VLPPPDVLAKCEDLGVPPARIIAMRGP 182 (257)
T ss_pred CceEEecCHHHHHHHHhccCCcEEEecCccch---HHHhcCcccceEEEE---EcCchHHHHHHHhcCCChhhEEEecCC
Confidence 34456678889999999999889999887643 333333333222211 1111111 11111
Q ss_pred ----------hhCCCcceEEEeehHhH------HHHHHHhCCchhhhhhh
Q 032013 110 ----------FFFSISAFILFVDLFCF------MYAAAYVGCDLYVYKRL 143 (149)
Q Consensus 110 ----------~~~~~~~~l~~eDs~~g------i~aa~~ag~~~~~~~~~ 143 (149)
...+ .++++-=||=.- ++||...|+++|++.|=
T Consensus 183 fs~~~n~all~q~~-id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 183 FSEEDNKALLEQYR-IDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred cChHHHHHHHHHhC-CCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 1111 245666676443 89999999999999885
No 445
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=28.38 E-value=99 Score=21.63 Aligned_cols=43 Identities=23% Similarity=0.080 Sum_probs=29.0
Q ss_pred CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC
Q 032013 19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK 63 (149)
Q Consensus 19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~ 63 (149)
..-|.++++|=||+.+....+.....+ . --+|..++|+.+++.
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 121 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPPEDR-Y-GRPGFKTVLEKIREL 121 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCCCCc-C-CCcCHHHHHHHHHHH
Confidence 345889999999999975433322222 1 237888998888763
No 446
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=28.19 E-value=2.8e+02 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 56 ILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 56 ~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
....+.+.|+++.|+++..... +...++.-+.-..|
T Consensus 216 Aa~~a~~~gi~v~I~~g~~~~~-l~~~l~g~~~GT~i 251 (363)
T TIGR01027 216 AADLATRAGVPVIIASGSKPEK-IADALEGAPVGTLF 251 (363)
T ss_pred HHHHHHHCCCeEEEEeCCCccH-HHHHhcCCCCcEEE
Confidence 3455566799988888876666 46666543333334
No 447
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=28.17 E-value=85 Score=23.79 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=39.6
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~ 93 (149)
.++.=+-|+++.. ++ .. ++.+.+.+..+++.|.+++|+++... . +...++..++...+.
T Consensus 2 ~~ViK~GGs~l~~-----~~---~~-~~~~~~~i~~l~~~g~~vvvV~g~g~-~-~~~~~~~~~~~~~~~ 60 (242)
T PF00696_consen 2 TIVIKLGGSSLTD-----KD---EE-LRELADDIALLSQLGIKVVVVHGGGS-F-TDELLEKYGIEPKFV 60 (242)
T ss_dssp EEEEEE-HHGHSS-----HS---HH-HHHHHHHHHHHHHTTSEEEEEESSHH-H-HHHHHHHCTHTTSEE
T ss_pred eEEEEECchhhCC-----ch---HH-HHHHHHHHHHHHhCCCeEEEEECChh-h-cCchHHhccCCcccc
Confidence 3555667777762 11 02 45666777778889999999998764 4 688888888765443
No 448
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=28.14 E-value=1.5e+02 Score=19.85 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=26.1
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l 83 (149)
.+.-|..++++.+++...+++++++...+. ....+
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i 50 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKD-IKEDI 50 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHH-HHHHH
Confidence 466799999999998877777777666665 34444
No 449
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=28.11 E-value=2e+02 Score=21.99 Aligned_cols=86 Identities=13% Similarity=-0.001 Sum_probs=43.4
Q ss_pred cHHHHHHHHHH--CCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccCC-ChhHHHHHHh--hCCCcceEEEeehH
Q 032013 52 HAKGILEALKE--KGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLSC-CIMCIIFFLF--FFSISAFILFVDLF 124 (149)
Q Consensus 52 g~~e~L~~Lk~--~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~p-~p~~~i~~~~--~~~~~~~l~~eDs~ 124 (149)
.+.++++.+.+ .++++.++-...... ......+..++.+.+.. .+..+ +....+|... .+.|+.. |-.+
T Consensus 220 ~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~adv~v~ps~~---e~~~ 295 (375)
T cd03821 220 LLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTF-TGMLYGEDKAAALADADLFVLPSHS---ENFG 295 (375)
T ss_pred HHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEE-cCCCChHHHHHHHhhCCEEEecccc---CCCC
Confidence 34466667766 367777776543322 01222255666543332 22222 2333444432 2222221 4445
Q ss_pred hHHHHHHHhCCchhhhh
Q 032013 125 CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 125 ~gi~aa~~ag~~~~~~~ 141 (149)
.=+.-|.++|+++|+..
T Consensus 296 ~~~~Eama~G~PvI~~~ 312 (375)
T cd03821 296 IVVAEALACGTPVVTTD 312 (375)
T ss_pred cHHHHHHhcCCCEEEcC
Confidence 56777888999988753
No 450
>PRK14556 pyrH uridylate kinase; Provisional
Probab=28.00 E-value=1.4e+02 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=23.0
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
..++.+++.|+++.|+.++.... +...++
T Consensus 210 ~A~~~a~~~gIpi~I~ng~~~~~-L~~~l~ 238 (249)
T PRK14556 210 GAFTQCRDFGIPIYVFDLTQPNA-LVDAVL 238 (249)
T ss_pred HHHHHHHHCCCcEEEECCCCchH-HHHHHc
Confidence 56788889999999999887777 466664
No 451
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=27.94 E-value=1.6e+02 Score=22.98 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHH--CCceEEEEeCCCch-HH---HHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEee
Q 032013 51 PHAKGILEALKE--KGIHVAVASRSPAP-DI---AKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVD 122 (149)
Q Consensus 51 pg~~e~L~~Lk~--~Gi~i~IaT~~~~~-~i---~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eD 122 (149)
+.+.++++.+++ .++.+.++-+.+.. .. ....++..++...+.. .+. .+.+..++.. ..+.|+ .-.|=
T Consensus 201 ~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~-~g~-~~~~~~~l~~ad~~i~ps--~~~e~ 276 (355)
T cd03819 201 EVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTF-VGH-CSDMPAAYALADIVVSAS--TEPEA 276 (355)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEE-cCC-cccHHHHHHhCCEEEecC--CCCCC
Confidence 345577777777 45777777655432 21 1234455565432221 122 2223333333 222222 11233
Q ss_pred hHhHHHHHHHhCCchhhhh
Q 032013 123 LFCFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 123 s~~gi~aa~~ag~~~~~~~ 141 (149)
.++-+.-|.++|+++|+..
T Consensus 277 ~~~~l~EA~a~G~PvI~~~ 295 (355)
T cd03819 277 FGRTAVEAQAMGRPVIASD 295 (355)
T ss_pred CchHHHHHHhcCCCEEEcC
Confidence 4567889999999998865
No 452
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=27.93 E-value=1.4e+02 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=26.5
Q ss_pred cCccHHHHHHHHHHC--CceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 49 LYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~--Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
+.+++.++++.+++. ...+.+.||+..-.-....+...|+.
T Consensus 78 l~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~ 120 (331)
T PRK00164 78 LRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLD 120 (331)
T ss_pred CccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCC
Confidence 457888999999886 35788888875321022344555654
No 453
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.89 E-value=1.1e+02 Score=25.32 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCceEEEEeCCCc-hHH--HHHHHHHcCCCCCcc--cccccCCChhHHHHHH------hhCCCcce-EEEe
Q 032013 54 KGILEALKEKGIHVAVASRSPA-PDI--AKTFLHKLGIHSMFV--PMVRLSCCIMCIIFFL------FFFSISAF-ILFV 121 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~-~~i--~~~~l~~~gl~~~f~--~~~~~~p~p~~~i~~~------~~~~~~~~-l~~e 121 (149)
..+|+++.+.|.|+.+-||-.. .++ +...+...|-.+..- +...| |.|.-++.+. ..+ .+ +-+.
T Consensus 124 ~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~Y-P~~~~~~nL~~i~~lk~~f---~~pVG~S 199 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSY-PAPLEDANLRTIPDLAERF---NVPVGLS 199 (327)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCC-CCCcccCCHHHHHHHHHHh---CCCEEee
Confidence 5789999999999999998753 221 223344444433221 22233 4444444443 122 23 3367
Q ss_pred ehHhHHHHHHHh---CCc
Q 032013 122 DLFCFMYAAAYV---GCD 136 (149)
Q Consensus 122 Ds~~gi~aa~~a---g~~ 136 (149)
|=..|+.++.+| |+.
T Consensus 200 DHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 200 DHTLGILAPVAAVALGAC 217 (327)
T ss_pred CCCCchHHHHHHHHcCCC
Confidence 877787665554 876
No 454
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=27.77 E-value=1.2e+02 Score=25.44 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.0
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
...-..++|+.++++|+++++++=.-.+. .+..++..++..
T Consensus 250 q~~F~e~~L~~ake~~I~~vl~~P~V~~~-~~~~~~~~~~~~ 290 (345)
T PF07611_consen 250 QFFFLEKFLKLAKENGIPVVLWWPKVSPP-YEKLYKELKVYE 290 (345)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeccCHH-HHHHHHhhchhh
Confidence 33456689999999999999999887777 588888887743
No 455
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=27.71 E-value=1.6e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=22.7
Q ss_pred cHH-HHHHHHHHCCceEEEEeCCCc-------hHHHHHHHHHcCCC
Q 032013 52 HAK-GILEALKEKGIHVAVASRSPA-------PDIAKTFLHKLGIH 89 (149)
Q Consensus 52 g~~-e~L~~Lk~~Gi~i~IaT~~~~-------~~i~~~~l~~~gl~ 89 (149)
|.. ++-+.+++.|.++.|+|++.. .. +...|+..|+.
T Consensus 12 g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~-v~~~L~~~~~~ 56 (380)
T cd08185 12 GKLNELGEEALKPGKKALIVTGNGSSKKTGYLDR-VIELLKQAGVE 56 (380)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHH-HHHHHHHcCCe
Confidence 444 444566666788999997653 23 35556666664
No 456
>PLN02891 IMP cyclohydrolase
Probab=27.59 E-value=1.6e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=26.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..|+.++.+.|.+.|+.+. .|+++ ...|+..|+.
T Consensus 32 Ktgi~~fAk~L~~~gveIi-STgGT-----ak~L~e~Gi~ 65 (547)
T PLN02891 32 KTDLALLANGLQELGYTIV-STGGT-----ASALEAAGVS 65 (547)
T ss_pred ccCHHHHHHHHHHCCCEEE-EcchH-----HHHHHHcCCc
Confidence 3689999999999999875 77774 3456677764
No 457
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=27.41 E-value=52 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.6
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
++-.+.+.+++++|+++|++.+|+||....+
T Consensus 163 I~t~eda~~a~~~lhq~~v~~vVITS~~~~~ 193 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKGVKTVVITSFDLGE 193 (308)
T ss_pred eccHHHHHHHHHHHHHhCCCEEEEEeeeeCC
Confidence 4445678899999999999999999987554
No 458
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=27.22 E-value=2e+02 Score=22.17 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHCC--ceEEEEeCCCchH-HHHHHHHHcCCCCCcccccccCCCh-hHHHHHH--hhCCCcceEEEeehH
Q 032013 51 PHAKGILEALKEKG--IHVAVASRSPAPD-IAKTFLHKLGIHSMFVPMVRLSCCI-MCIIFFL--FFFSISAFILFVDLF 124 (149)
Q Consensus 51 pg~~e~L~~Lk~~G--i~i~IaT~~~~~~-i~~~~l~~~gl~~~f~~~~~~~p~p-~~~i~~~--~~~~~~~~l~~eDs~ 124 (149)
+.+.+++..+.+.+ +++.++-+..... .....++..+....+.. .+.-|.. ...++.. ..+.|+. .|-..
T Consensus 211 ~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~-~g~~~~~~~~~~~~~~d~~l~ps~---~e~~~ 286 (365)
T cd03809 211 ERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRF-LGYVSDEELAALYRGARAFVFPSL---YEGFG 286 (365)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEE-CCCCChhHHHHHHhhhhhhcccch---hccCC
Confidence 34556777777775 6777776443322 01222234555443322 2222222 2344443 3344432 24445
Q ss_pred hHHHHHHHhCCchhhhh
Q 032013 125 CFMYAAAYVGCDLYVYK 141 (149)
Q Consensus 125 ~gi~aa~~ag~~~~~~~ 141 (149)
.-+.-|.++|+++|+..
T Consensus 287 ~~~~Ea~a~G~pvI~~~ 303 (365)
T cd03809 287 LPVLEAMACGTPVIASN 303 (365)
T ss_pred CCHHHHhcCCCcEEecC
Confidence 55788999999988753
No 459
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=27.15 E-value=1e+02 Score=24.92 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.|.+.+.++.++++|.+++.+|+.+...
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4778999999999999999999987765
No 460
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.04 E-value=25 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.075 Sum_probs=22.0
Q ss_pred CccCccHHHHHHHHHHCC-ceEEEEeCCC
Q 032013 47 PYLYPHAKGILEALKEKG-IHVAVASRSP 74 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~ 74 (149)
........++.+.+.+.+ -++.+.||+.
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk 140 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSK 140 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchh
Confidence 567788899999998887 6777777764
No 461
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=26.91 E-value=1.3e+02 Score=20.34 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=40.2
Q ss_pred ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
.+.++.|+.|+=.=. +. -.--....++.++..|..+.+++-++ . +...+...|+...|
T Consensus 44 ~~~ivIDls~v~~~d-----S~-----gl~~L~~~~~~~~~~g~~~~l~~i~p--~-v~~~~~~~gl~~~~ 101 (117)
T COG1366 44 ARGLVIDLSGVDFMD-----SA-----GLGVLVALLKSARLRGVELVLVGIQP--E-VARTLELTGLDKSF 101 (117)
T ss_pred CcEEEEECCCCceec-----hH-----HHHHHHHHHHHHHhcCCeEEEEeCCH--H-HHHHHHHhCchhhc
Confidence 444999999986631 11 12223466788999998888777664 3 57888999998766
No 462
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=26.69 E-value=73 Score=26.84 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=33.7
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f 92 (149)
-+..++.++=+.|++.|+++.+..|.+... +..+++++++...|
T Consensus 58 Fl~esL~~L~~~L~~~g~~L~v~~G~~~~v-l~~L~~~~~~~~V~ 101 (429)
T TIGR02765 58 FLLESLKDLRTSLRKLGSDLLVRSGKPEDV-LPELIKELGVRTVF 101 (429)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeCCHHHH-HHHHHHHhCCCEEE
Confidence 345566666678889999999999988777 68888888876543
No 463
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.48 E-value=1.6e+02 Score=18.94 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.8
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
++.-|..+.++.+++...+++++.+...+.
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~ 40 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPR 40 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHH
Confidence 467799999999997767777666655555
No 464
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=26.35 E-value=1.4e+02 Score=22.32 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=32.0
Q ss_pred ccCccHH-HHHHHHHHCCce-EEEEeCCCch--HHHHHHHHHcCCCCCc
Q 032013 48 YLYPHAK-GILEALKEKGIH-VAVASRSPAP--DIAKTFLHKLGIHSMF 92 (149)
Q Consensus 48 ~~~pg~~-e~L~~Lk~~Gi~-i~IaT~~~~~--~i~~~~l~~~gl~~~f 92 (149)
...|.+. .+++.|++.|.. +.|..+.... . ....++..|+....
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~-~~~~~~~~G~~~~~ 66 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAAD-TREVFKRSGYEEIA 66 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHh-HHHHHHHcchhhHH
Confidence 3445554 668999999987 8888877654 4 67888888876543
No 465
>PRK00648 Maf-like protein; Reviewed
Probab=26.35 E-value=53 Score=24.89 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.6
Q ss_pred CceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 64 GIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 64 Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
+++++++|+++++ ..+|+++|+.
T Consensus 2 ~~~lILAS~SprR---~elL~~~g~~ 24 (191)
T PRK00648 2 KYKIILASSSPRR---KEILEGFRIP 24 (191)
T ss_pred CCcEEEeCCCHHH---HHHHHHCCCC
Confidence 5789999999876 4678999885
No 466
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.31 E-value=1.6e+02 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
.|...+..+++++.|+.++.+|..+... +....+..
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~ 77 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcc
Confidence 5666777888888899999999877666 57777776
No 467
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=26.26 E-value=1.9e+02 Score=22.11 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=16.9
Q ss_pred HHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013 56 ILEALKEKGIHVAVASRSPAPDIAKTFLH 84 (149)
Q Consensus 56 ~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~ 84 (149)
.++.+.+.|+++.|+.+..... +...++
T Consensus 193 a~~~~~~~~i~v~I~~g~~~~~-l~~~l~ 220 (229)
T cd04239 193 ALTLCRRNKIPIIVFNGLKPGN-LLRALK 220 (229)
T ss_pred HHHHHHHCCCeEEEECCCChhH-HHHHHc
Confidence 3455666777777777765555 344443
No 468
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=26.18 E-value=2.9e+02 Score=20.92 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.3
Q ss_pred ccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe
Q 032013 17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71 (149)
Q Consensus 17 ~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT 71 (149)
.....|+.|+|=-||+.+.. . -..+.+.|+.|.++|..+..+-
T Consensus 116 e~~~~p~~Ifl~n~gV~l~~------~------~~~~~e~Lk~L~~~Gv~I~~CG 158 (194)
T TIGR03527 116 ELDPLPKRILFVNGGVKLTT------E------GSEVLEDLKELEKKGVEILSCG 158 (194)
T ss_pred hCCCCceEEEEEccceeecc------C------CchHHHHHHHHHHCCCEEEEeH
Confidence 44566888999999999972 1 1477899999999998887653
No 469
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=26.06 E-value=70 Score=21.38 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCch
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAP 76 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~ 76 (149)
.+..++..+++..+.+++++||+...
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~~ 93 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKEF 93 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-E
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCeE
Confidence 47889999999999999999998643
No 470
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=26.01 E-value=1.1e+02 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 51 PHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 51 pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
+...+.|+++.++|++++++|-.....
T Consensus 251 ~~~~~~l~~~~~~Gi~VV~~Sr~~~G~ 277 (335)
T PRK09461 251 PALLQELKEASERGIVVVNLTQCMSGK 277 (335)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCCc
Confidence 678899999999999999998655443
No 471
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=25.96 E-value=1.8e+02 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
.+++.++.+.|.+.|+.+. +|++. ...|+..|+
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~GT-----ak~L~e~GI 46 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGGT-----AKLLAEAGI 46 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-EcchH-----HHHHHHCCC
Confidence 3688899999999999995 88764 455677776
No 472
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=25.94 E-value=2.2e+02 Score=19.46 Aligned_cols=72 Identities=10% Similarity=-0.070 Sum_probs=39.2
Q ss_pred ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCCcccccccCCChhHHHHHHhhCCCcc-eEEEeeh
Q 032013 48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVRLSCCIMCIIFFLFFFSISA-FILFVDL 123 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~-~l~~eDs 123 (149)
++.-|..+.++.++....+++|+++...+. ....++. ..... .......... -++=.++|.++.. ++.+.|.
T Consensus 25 Klv~G~~~vlkalk~gkaklViiA~D~~~~-~kkki~~~~~~~~-Vpv~~~~~t~--~eLG~A~Gk~~r~svvaI~D~ 98 (108)
T PTZ00106 25 KYTLGTKSTLKALRNGKAKLVIISNNCPPI-RRSEIEYYAMLSK-TGVHHYAGNN--NDLGTACGRHFRVSVMSITDA 98 (108)
T ss_pred CeeecHHHHHHHHHcCCeeEEEEeCCCCHH-HHHHHHHHHhhcC-CCEEEeCCCH--HHHHHHhCCccCeEEEEEeCc
Confidence 567799999999997767777666665555 3443332 22211 1111111122 2444457766655 5666664
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.90 E-value=1.2e+02 Score=24.02 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=36.0
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK 85 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~ 85 (149)
.|+.++||===.-+| ..+..++.++++.|.+.|..++++|.--. . ++...++
T Consensus 154 ~P~vmLFDEPTSALD-----------PElv~EVL~vm~~LA~eGmTMivVTHEM~-F-Ar~Vadr 205 (240)
T COG1126 154 DPKVMLFDEPTSALD-----------PELVGEVLDVMKDLAEEGMTMIIVTHEMG-F-AREVADR 205 (240)
T ss_pred CCCEEeecCCcccCC-----------HHHHHHHHHHHHHHHHcCCeEEEEechhH-H-HHHhhhe
Confidence 378888884333333 13556788999999999999999997542 2 4555544
No 474
>PLN02920 pantothenate kinase 1
Probab=25.82 E-value=3.3e+02 Score=23.30 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=41.0
Q ss_pred CCccEEEEecCCccccccccccccCCC--------C--------------ccCccHHHHHHHHHHC--------------
Q 032013 20 NLPRLVVFDLDYTLWPFYCECCYEDEI--------P--------------YLYPHAKGILEALKEK-------------- 63 (149)
Q Consensus 20 ~~~k~vifDlDGTLld~~~~~~~~~~~--------~--------------~~~pg~~e~L~~Lk~~-------------- 63 (149)
..++.+.+|+=|||... +++...... . .....+.+++++++++
T Consensus 16 ~~~~~~a~Diggsl~Kl-vy~~~~~~~~~~~~~~~~~~~~~~~g~l~F~~F~T~~i~~~i~fl~~~~~~~~~~~~~~~~~ 94 (398)
T PLN02920 16 IQISHLALDIGGSLIKL-VYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFETRKINDCLEFISSNKLHHGGFQHHENPT 94 (398)
T ss_pred cceeEEEEEcCCceEEE-EEEeccCCccccccccccccccCCCceEEEEEecccCHHHHHHHHHhccccccccccccccC
Confidence 34788999999999973 221110000 0 1345677888888765
Q ss_pred -CceEEEEeCCCchHHHHHHHHHcCC
Q 032013 64 -GIHVAVASRSPAPDIAKTFLHKLGI 88 (149)
Q Consensus 64 -Gi~i~IaT~~~~~~i~~~~l~~~gl 88 (149)
....+.+||.......+.+-+.+++
T Consensus 95 ~~~~~i~~TGGGA~k~~~~~~~~~~i 120 (398)
T PLN02920 95 HDKNFIKATGGGAYKFADLFKEKLGI 120 (398)
T ss_pred CCceEEEEECCcHHHHHHHHHhhhCC
Confidence 2477789988766523444344554
No 475
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=25.66 E-value=1.1e+02 Score=19.42 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=38.9
Q ss_pred cCCCccEEEEecCCc---cccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013 18 FENLPRLVVFDLDYT---LWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 18 ~~~~~k~vifDlDGT---Lld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~ 90 (149)
....+...++|+++- +++.. ++... ....+-..+.+.|.++|..+.|+.+=. .. ....|+..|+.-
T Consensus 9 Fg~a~~f~I~d~~~~~~~~v~~~---~~~~~--~~~~~~~~~~~~l~~~~v~~li~~~iG-~~-~~~~L~~~gI~v 77 (94)
T PF02579_consen 9 FGRAPYFLIYDVEDGEIKFVENR---NPACN--EGGGGGDKIAKFLAEEGVDVLICGGIG-EG-AFRALKEAGIKV 77 (94)
T ss_dssp CTT-SEEEEEEEESSCEEEEEEE---ECECC--CSSCHSTHHHHHHHHTTESEEEESCSC-HH-HHHHHHHTTSEE
T ss_pred HCCCCEEEEEEEeCCeEEEEEee---ccccc--cccccchhHHHHHHHcCCCEEEEeCCC-HH-HHHHHHHCCCEE
Confidence 345578899999953 44421 00000 011122356677778899888777654 44 578888888754
No 476
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.50 E-value=2.6e+02 Score=22.02 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
..+++..|++.|+.+.-+++-.-.. =....+.+|+.
T Consensus 198 l~~iI~~l~~~g~~VvAivsD~g~~-N~~~w~~Lgi~ 233 (236)
T PF12017_consen 198 LKNIIEKLHEIGYNVVAIVSDMGSN-NISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCcc-hHHHHHHcCCC
Confidence 3688999999999987777554443 25666778864
No 477
>PLN02825 amino-acid N-acetyltransferase
Probab=25.45 E-value=1.8e+02 Score=25.62 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=46.4
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
++++.=+.|-.+.. ..++....-|..|+..|++++++=|..+ . +...++..|+..-|..
T Consensus 18 ktfVIk~gG~~l~~-----------~~~~~l~~DialL~~lGi~~VlVHGggp-q-I~~~l~~~gi~~~f~~ 76 (515)
T PLN02825 18 STFVVVISGEVVAG-----------PHLDNILQDISLLHGLGIKFVLVPGTHV-Q-IDKLLAERGREPKYVG 76 (515)
T ss_pred CEEEEEECchhhcC-----------chHHHHHHHHHHHHHCCCCEEEEcCCCH-H-HHHHHHHcCCCceeeC
Confidence 56777799988851 1346777788899999999999998864 4 6999999999876654
No 478
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=25.36 E-value=56 Score=22.60 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
...++-+..+++|+.++.++...... +...+++.+..
T Consensus 50 ~l~~l~~~~~~~~v~~v~v~~~~~~~-~~~~~~~~~~~ 86 (146)
T PF08534_consen 50 YLNELQEKYKDKGVDVVGVSSDDDPP-VREFLKKYGIN 86 (146)
T ss_dssp HHHHHHHHHHTTTCEEEEEEESSSHH-HHHHHHHTTTT
T ss_pred hHHhhhhhhccCceEEEEecccCCHH-HHHHHHhhCCC
Confidence 33444444577889998888777777 68888886654
No 479
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.35 E-value=1.2e+02 Score=25.51 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
-.++..++.|.++.++|++.+.. +..++.+|-+.|.+.
T Consensus 196 ~aVq~AKAMG~rV~vis~~~~kk--eea~~~LGAd~fv~~ 233 (360)
T KOG0023|consen 196 MAVQYAKAMGMRVTVISTSSKKK--EEAIKSLGADVFVDS 233 (360)
T ss_pred HHHHHHHHhCcEEEEEeCCchhH--HHHHHhcCcceeEEe
Confidence 35788999999999999887664 677888998776654
No 480
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.23 E-value=1.3e+02 Score=20.25 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.+.+.++.+++.+.|+++. +|.+. ..+|+..|+.
T Consensus 11 K~~~~~~a~~l~~~G~~i~-AT~gT-----a~~L~~~Gi~ 44 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLF-ATGGT-----SRVLADAGIP 44 (112)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECcHH-----HHHHHHcCCc
Confidence 4678889999999999985 88763 3445667764
No 481
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=25.17 E-value=88 Score=22.18 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=33.0
Q ss_pred EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC--CchHHHHHHHHHcC
Q 032013 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS--PAPDIAKTFLHKLG 87 (149)
Q Consensus 24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~--~~~~i~~~~l~~~g 87 (149)
.++||.|.---. +..+.....++-+.|+++|..+-+++=. ...- +..++-..|
T Consensus 72 ~iaFD~D~~~~T----------n~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KG-iDD~l~~~G 126 (130)
T PF12965_consen 72 YIAFDADTKPKT----------NKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKG-IDDLLAAKG 126 (130)
T ss_pred EEEecCCCccch----------hHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCC-HhHHHHhcC
Confidence 588999832221 0134556667778899999999999944 3333 344444443
No 482
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=25.15 E-value=3.9e+02 Score=22.00 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHCC--ceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEe--ehHh
Q 032013 52 HAKGILEALKEKG--IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFV--DLFC 125 (149)
Q Consensus 52 g~~e~L~~Lk~~G--i~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~e--Ds~~ 125 (149)
-+..++++|++++ +++.+.|.++... ...++. ...-+. ..+-|-..+..... ....|+-.++.| --++
T Consensus 65 ~~~~l~~~l~~~~~~~~i~~t~~t~~~~---~~~~~~-~~~~~~--~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~~~~ 138 (425)
T PRK05749 65 AAIPLIRALRKRYPDLPILVTTMTPTGS---ERAQAL-FGDDVE--HRYLPYDLPGAVRRFLRFWRPKLVIIMETELWPN 138 (425)
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCccHH---HHHHHh-cCCCce--EEEecCCcHHHHHHHHHhhCCCEEEEEecchhHH
Confidence 4567888888864 6666665554332 222221 111111 12223222222222 336676666654 4678
Q ss_pred HHHHHHHhCCchhhh
Q 032013 126 FMYAAAYVGCDLYVY 140 (149)
Q Consensus 126 gi~aa~~ag~~~~~~ 140 (149)
.+.+++..|++++++
T Consensus 139 ~l~~~~~~~ip~vl~ 153 (425)
T PRK05749 139 LIAELKRRGIPLVLA 153 (425)
T ss_pred HHHHHHHCCCCEEEE
Confidence 888888889998874
No 483
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=25.11 E-value=1.9e+02 Score=19.65 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.3
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.|...++.+.+++.|+.++.++...... .....+..++.
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~~~~~~~~~~ 81 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPESPEK-LEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCCHHH-HHHHHHhcCCC
Confidence 4555666777777899999888776665 45566666653
No 484
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=24.85 E-value=1.6e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013 54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH 89 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~ 89 (149)
.+++++++++|+++.+-|=+.... ....++.+|.+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~-~~~l~~~~GVd 252 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTE-KQYFAKTLNVP 252 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHH-HHHHHHHhCCC
Confidence 478999999999999999776666 35544438876
No 485
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=24.79 E-value=2.4e+02 Score=21.12 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=36.8
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCC--------CchHHHHHHHH-HcCCCC-Ccc--cccccCCChhHHHHHHhh
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRS--------PAPDIAKTFLH-KLGIHS-MFV--PMVRLSCCIMCIIFFLFF 111 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~--------~~~~i~~~~l~-~~gl~~-~f~--~~~~~~p~p~~~i~~~~~ 111 (149)
-+++..++.++.+++|+.+.-++.+ +..+ +....+ ..|+.- .+. .+++...||. +-|++..
T Consensus 42 q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~e-i~~f~~~~~g~~Fpv~~k~dvnG~~~~pl-~~~Lk~~ 114 (183)
T PRK10606 42 QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEE-IKTYCRTTWGVTFPMFSKIEVNGEGRHPL-YQKLIAA 114 (183)
T ss_pred HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHH-HHHHHHHccCCCceeEEEEccCCCCCCHH-HHHHHHh
Confidence 4667777778888889888766642 3345 466665 566542 232 2356778883 4455433
No 486
>PRK10976 putative hydrolase; Provisional
Probab=24.77 E-value=75 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=28.4
Q ss_pred HHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 104 CIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 104 ~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+.-++. .+++++++++|=|+.|.+.--..||.-+.+
T Consensus 194 al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm 231 (266)
T PRK10976 194 ALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIM 231 (266)
T ss_pred HHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeee
Confidence 344444 667779999999999999999999975543
No 487
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.75 E-value=2.6e+02 Score=23.41 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCceEEEEeCCCc-hHH--HHHHHHHcCCCCCccc-ccccCCChhHHHHHHhhCCC---cce-EEEeehHh
Q 032013 54 KGILEALKEKGIHVAVASRSPA-PDI--AKTFLHKLGIHSMFVP-MVRLSCCIMCIIFFLFFFSI---SAF-ILFVDLFC 125 (149)
Q Consensus 54 ~e~L~~Lk~~Gi~i~IaT~~~~-~~i--~~~~l~~~gl~~~f~~-~~~~~p~p~~~i~~~~~~~~---~~~-l~~eDs~~ 125 (149)
..+|+++.+.|.|+++.||-.. .++ +...+++.|-.++.-. -.-.-|.|.-++.+..-... =+| +-+.|-..
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~ 216 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL 216 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc
Confidence 3789999999999999997653 221 3455666665532111 12335666667777622111 033 66778888
Q ss_pred HHHHHHHh---CCchh
Q 032013 126 FMYAAAYV---GCDLY 138 (149)
Q Consensus 126 gi~aa~~a---g~~~~ 138 (149)
|+.|...| |+.+|
T Consensus 217 g~~a~l~AvALGA~vi 232 (347)
T COG2089 217 GILAPLAAVALGASVI 232 (347)
T ss_pred chhHHHHHHHhcccce
Confidence 88776655 66543
No 488
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.61 E-value=1.2e+02 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.7
Q ss_pred CccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013 50 YPHAKGILEALKEKGIHVAVASRSPAPD 77 (149)
Q Consensus 50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~ 77 (149)
.|.+.+.+++++++|.+++.+|+.+...
T Consensus 144 T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 144 TPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 4788999999999999999999887665
No 489
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.47 E-value=1.7e+02 Score=24.40 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=21.9
Q ss_pred cHH-HHHHHHHHCC-ceEEEEeCCCc------hHHHHHHHHHcCCC
Q 032013 52 HAK-GILEALKEKG-IHVAVASRSPA------PDIAKTFLHKLGIH 89 (149)
Q Consensus 52 g~~-e~L~~Lk~~G-i~i~IaT~~~~------~~i~~~~l~~~gl~ 89 (149)
|.. ++-+.+++.| .++.|+|++.. .. +...|+..|+.
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~-v~~~L~~~~i~ 61 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGD-VQKALEERNIF 61 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHH-HHHHHHHcCCe
Confidence 444 4446677777 57888887532 23 35556666653
No 490
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.30 E-value=3.2e+02 Score=21.41 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHHHHHC-CceEEEEeCCC-chHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHH
Q 032013 53 AKGILEALKEK-GIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMY 128 (149)
Q Consensus 53 ~~e~L~~Lk~~-Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~ 128 (149)
..++++.++++ ..++.++-+.+ ... .+...+..++.+.+... +..++ ...+|.. ..+.|+. .|-.+.-+.
T Consensus 215 li~a~~~l~~~~~~~l~i~G~g~~~~~-~~~~~~~~~~~~~v~~~-g~~~~-~~~~~~~~d~~v~ps~---~E~~~~~~~ 288 (371)
T cd04962 215 VIRIFAKVRKEVPARLLLVGDGPERSP-AERLARELGLQDDVLFL-GKQDH-VEELLSIADLFLLPSE---KESFGLAAL 288 (371)
T ss_pred HHHHHHHHHhcCCceEEEEcCCcCHHH-HHHHHHHcCCCceEEEe-cCccc-HHHHHHhcCEEEeCCC---cCCCccHHH
Confidence 33455555553 56777775443 344 46666777765433321 22222 3344443 2233321 455566788
Q ss_pred HHHHhCCchhhhh
Q 032013 129 AAAYVGCDLYVYK 141 (149)
Q Consensus 129 aa~~ag~~~~~~~ 141 (149)
-|.++|+++|+..
T Consensus 289 EAma~g~PvI~s~ 301 (371)
T cd04962 289 EAMACGVPVVASN 301 (371)
T ss_pred HHHHcCCCEEEeC
Confidence 8899999988753
No 491
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.30 E-value=3.4e+02 Score=21.60 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=41.7
Q ss_pred CceEEEEeCCC-chHHHHHHHHHcCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013 64 GIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY 140 (149)
Q Consensus 64 Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~ 140 (149)
++++.++-.++ ... .+..++..++...+.. .+.. +....++.. ..+.|+. .|-.+.=+.-|.++|.++++.
T Consensus 229 ~~~l~i~G~g~~~~~-~~~~~~~~~~~~~v~~-~g~~-~~~~~~~~~adi~v~pS~---~Eg~~~~~lEAma~G~Pvv~s 302 (374)
T TIGR03088 229 RLRLVIVGDGPARGA-CEQMVRAAGLAHLVWL-PGER-DDVPALMQALDLFVLPSL---AEGISNTILEAMASGLPVIAT 302 (374)
T ss_pred ceEEEEecCCchHHH-HHHHHHHcCCcceEEE-cCCc-CCHHHHHHhcCEEEeccc---cccCchHHHHHHHcCCCEEEc
Confidence 46777765444 345 5777788887653221 1222 222344443 2233332 466788888999999999875
Q ss_pred h
Q 032013 141 K 141 (149)
Q Consensus 141 ~ 141 (149)
.
T Consensus 303 ~ 303 (374)
T TIGR03088 303 A 303 (374)
T ss_pred C
Confidence 4
No 492
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=24.23 E-value=1.9e+02 Score=19.80 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=25.9
Q ss_pred cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013 49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL 86 (149)
Q Consensus 49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~ 86 (149)
..=|..+.++.++.-.-+++|+.++.+.. .+.-++..
T Consensus 20 vilG~k~tiK~lk~gkaKliiiAsN~P~~-~k~~ieyY 56 (100)
T COG1911 20 VILGSKRTIKSLKLGKAKLIIIASNCPKE-LKEDIEYY 56 (100)
T ss_pred EEEehHHHHHHHHcCCCcEEEEecCCCHH-HHHHHHHH
Confidence 44588999999998766666666655555 46666654
No 493
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=24.03 E-value=3e+02 Score=23.23 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=45.7
Q ss_pred cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP 94 (149)
Q Consensus 23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~ 94 (149)
++++.=+.|.+++. + ..+...+-+..|+..|++++++-|+. +. +...++.+|+...|..
T Consensus 18 ~~~ViK~GG~~~~~-----~------~~~~~~~~i~~l~~~g~~~vlVHGgg-~~-i~~~~~~~g~~~~~~~ 76 (429)
T TIGR01890 18 KTFVVGLGGELVEG-----G------NLGNIVADIALLHSLGVRLVLVHGAR-PQ-IERILAARGRTPHYHR 76 (429)
T ss_pred CEEEEEEChhhccC-----c------cHHHHHHHHHHHHHCCCcEEEEcCCC-HH-HHHHHHHcCCCceeeC
Confidence 57888899988851 1 12466777888999999999999887 44 6899999999876654
No 494
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.02 E-value=31 Score=27.28 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=20.2
Q ss_pred CccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013 47 PYLYPHAKGILEALKEKGIHVAVASRSPA 75 (149)
Q Consensus 47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~ 75 (149)
....+...++.+.+.+. -++.+.||+..
T Consensus 111 ~~~v~s~~~a~~~l~~~-~~vllttGsk~ 138 (248)
T PRK08057 111 WIEVDDIEEAAEALAPF-RRVLLTTGRQP 138 (248)
T ss_pred EEEECCHHHHHHHhhcc-CCEEEecCcch
Confidence 34556788888888777 57888887754
No 495
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=23.97 E-value=3.9e+02 Score=21.55 Aligned_cols=102 Identities=17% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCC----ceEEEEeCCCchHHH
Q 032013 4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG----IHVAVASRSPAPDIA 79 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~G----i~i~IaT~~~~~~i~ 79 (149)
+.+.-++++.....+...-.+-+||.||-++ ...+.+--..-+..++-++-.+| -.+.+.||+-..+ .
T Consensus 142 ~~~~l~~~q~~~~~TG~~H~Aal~~~~g~l~-------~~~EDVGRHNAvDKliG~~~~~G~~~~~~vl~tSGR~S~E-m 213 (266)
T COG1526 142 ALKALEKAQPLYRKTGGVHAAALFDPDGELL-------LVREDVGRHNAVDKLIGRALLEGIPLSGKVLVTSGRASSE-M 213 (266)
T ss_pred HHHHHHHhhHHHHhhCcEeeEEEEcCCCCEE-------EEEEeccchhHHHHHHHHHHHCCCCcCCeEEEEcCCccHH-H
Q ss_pred HHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013 80 KTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY 138 (149)
Q Consensus 80 ~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~ 138 (149)
-...-..|++ +-..++.| +.-+|+.|.++|+-++
T Consensus 214 V~Kaa~~Gip-----il~S~SAP--------------------T~Lai~~Ae~~~iTLv 247 (266)
T COG1526 214 VQKAAMAGIP-----ILASVSAP--------------------TSLAIEAAERLGLTLV 247 (266)
T ss_pred HHHHHHhCCc-----EEEEcccc--------------------hHHHHHHHHHcCCEEE
No 496
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.94 E-value=2.3e+02 Score=18.82 Aligned_cols=84 Identities=11% Similarity=-0.080 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEE-e---e---hHh
Q 032013 53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILF-V---D---LFC 125 (149)
Q Consensus 53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~-e---D---s~~ 125 (149)
..++.+.+++.+.-+.+.+|..... +......+..... ....-+............++..|+++ - . ..-
T Consensus 3 i~~~~~~i~~~~~i~i~g~g~s~~~-a~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~ 78 (139)
T cd05013 3 LEKAVDLLAKARRIYIFGVGSSGLV-AEYLAYKLLRLGK---PVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVE 78 (139)
T ss_pred HHHHHHHHHhCCEEEEEEcCchHHH-HHHHHHHHHHcCC---ceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHH
Confidence 4567777777765555555554332 3333333221111 11112222112222234566666444 3 2 233
Q ss_pred HHHHHHHhCCchhhh
Q 032013 126 FMYAAAYVGCDLYVY 140 (149)
Q Consensus 126 gi~aa~~ag~~~~~~ 140 (149)
.++.++..|+++++.
T Consensus 79 ~~~~a~~~g~~iv~i 93 (139)
T cd05013 79 AAEIAKERGAKVIAI 93 (139)
T ss_pred HHHHHHHcCCeEEEE
Confidence 455666669888775
No 497
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=23.85 E-value=2.5e+02 Score=26.12 Aligned_cols=46 Identities=26% Similarity=0.457 Sum_probs=33.2
Q ss_pred ccEEEEecCCcccc-cccc--ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013 22 PRLVVFDLDYTLWP-FYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP 74 (149)
Q Consensus 22 ~k~vifDlDGTLld-~~~~--~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~ 74 (149)
...+.+|+| .+. .+.. |++ .-+|....++++|+++|+++++.-+-.
T Consensus 296 ~d~~~lD~~--~~~~~~~~F~wd~-----~~FP~pk~mi~~l~~~Gikl~~~i~P~ 344 (772)
T COG1501 296 LDVFVLDID--FWMDNWGDFTWDP-----DRFPDPKQMIAELHEKGIKLIVIINPY 344 (772)
T ss_pred ceEEEEeeh--hhhccccceEECc-----ccCCCHHHHHHHHHhcCceEEEEeccc
Confidence 467999999 322 2221 222 367888899999999999999887643
No 498
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.81 E-value=3.2e+02 Score=20.51 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=45.8
Q ss_pred CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013 21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM 91 (149)
Q Consensus 21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~ 91 (149)
..|.|+|-+=|-.++. ++ ..-.||..+-.++|+++|+..+++-+-....+....-+.++-...
T Consensus 43 GKKvIifGvPgAFtPt----Cs----~~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~ 105 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPT----CS----SSHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDH 105 (171)
T ss_pred CceEEEEcCCCccCCc----cc----cccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccce
Confidence 3578999999988873 12 245689999999999999987776655444435777777776543
No 499
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=23.78 E-value=2.2e+02 Score=22.50 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=28.5
Q ss_pred ccCccHHHHHHHHHHC-CceEEEEeCC--CchHHHHHHHHHcCCCC
Q 032013 48 YLYPHAKGILEALKEK-GIHVAVASRS--PAPDIAKTFLHKLGIHS 90 (149)
Q Consensus 48 ~~~pg~~e~L~~Lk~~-Gi~i~IaT~~--~~~~i~~~~l~~~gl~~ 90 (149)
.+.+...+.++..++. ++.+.+.||+ .... ....+...++..
T Consensus 77 ll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~-~~~~l~~~g~~~ 121 (347)
T COG0535 77 LLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEE-VLEKLKEAGLDY 121 (347)
T ss_pred cccccHHHHHHHHhhcCCeEEEEeCCCccCCHH-HHHHHHhcCCcE
Confidence 3447778888888866 8888888887 3334 355556666654
No 500
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=23.72 E-value=80 Score=24.33 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=28.3
Q ss_pred HHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013 104 CIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV 139 (149)
Q Consensus 104 ~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~ 139 (149)
+.-++. .+++++++++|=|+.|.+.--+.||.-+.+
T Consensus 200 al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm 237 (270)
T PRK10513 200 GVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAM 237 (270)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEe
Confidence 344444 667789999999999999999999975543
Done!