Query 032014
Match_columns 149
No_of_seqs 116 out of 547
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4680 Uncharacterized conser 100.0 6.9E-34 1.5E-38 198.3 15.4 135 13-147 17-151 (153)
2 cd00917 PG-PI_TP The phosphati 100.0 3.3E-32 7.1E-37 191.0 16.1 116 23-138 1-122 (122)
3 smart00737 ML Domain involved 100.0 4.3E-29 9.3E-34 173.8 14.8 113 23-138 1-118 (118)
4 PF02221 E1_DerP2_DerF2: ML do 100.0 3.2E-28 6.9E-33 172.1 13.4 121 20-140 1-134 (134)
5 cd00916 Npc2_like Niemann-Pick 100.0 6.2E-28 1.4E-32 169.5 12.1 116 23-138 1-123 (123)
6 cd00918 Der-p2_like Several gr 100.0 5.2E-28 1.1E-32 169.0 11.0 117 23-140 1-120 (120)
7 KOG4063 Major epididymal secre 99.9 2.3E-26 4.9E-31 163.0 12.2 141 1-141 1-157 (158)
8 cd00912 ML The ML (MD-2-relate 99.9 1.5E-25 3.2E-30 158.0 14.5 112 23-137 1-126 (127)
9 cd00915 MD-1_MD-2 MD-1 and MD- 99.9 5.4E-22 1.2E-26 139.5 12.4 111 21-137 11-129 (130)
10 cd00258 GM2-AP GM2 activator p 99.9 7.9E-21 1.7E-25 137.2 14.8 121 20-142 2-161 (162)
11 PF14558 TRP_N: ML-like domain 99.0 2E-08 4.3E-13 72.0 11.7 118 20-141 4-137 (141)
12 PF15418 DUF4625: Domain of un 97.7 0.0021 4.6E-08 45.6 12.1 104 35-140 16-131 (132)
13 smart00675 DM11 Domains in hyp 96.9 0.027 5.9E-07 41.4 10.8 100 21-124 11-155 (164)
14 smart00697 DM8 Repeats found i 96.8 0.0038 8.3E-08 40.8 5.2 35 92-126 41-79 (93)
15 PF14524 Wzt_C: Wzt C-terminal 96.7 0.035 7.6E-07 38.5 9.7 89 33-124 12-108 (142)
16 PF07705 CARDB: CARDB; InterP 96.1 0.087 1.9E-06 34.3 8.6 82 34-127 4-86 (101)
17 PF10633 NPCBM_assoc: NPCBM-as 95.5 0.068 1.5E-06 33.9 6.1 72 47-124 2-76 (78)
18 PF06477 DUF1091: Protein of u 95.3 0.024 5.2E-07 36.2 3.4 28 92-119 50-81 (81)
19 PF04234 CopC: CopC domain; I 94.8 0.21 4.7E-06 33.1 6.9 29 103-131 60-88 (97)
20 PF02115 Rho_GDI: RHO protein 94.7 0.38 8.3E-06 36.5 9.0 94 46-142 103-199 (200)
21 PLN00044 multi-copper oxidase- 94.7 0.14 2.9E-06 45.0 7.2 74 32-106 30-119 (596)
22 PRK10301 hypothetical protein; 93.7 0.13 2.7E-06 36.1 4.2 28 104-131 88-115 (124)
23 PLN02168 copper ion binding / 93.6 0.22 4.7E-06 43.3 6.3 68 32-106 29-116 (545)
24 PLN02991 oxidoreductase 93.3 0.18 3.8E-06 43.8 5.4 68 32-106 31-118 (543)
25 PLN02354 copper ion binding / 93.2 0.18 3.8E-06 43.9 5.2 68 32-106 30-117 (552)
26 TIGR02186 alph_Pro_TM conserve 92.1 0.67 1.4E-05 36.6 6.6 41 101-142 181-221 (261)
27 PF05404 TRAP-delta: Transloco 91.9 1.8 3.9E-05 31.9 8.3 87 24-128 18-105 (167)
28 PF09608 Alph_Pro_TM: Putative 91.4 0.87 1.9E-05 35.4 6.6 41 101-142 156-196 (236)
29 PF00339 Arrestin_N: Arrestin 90.8 0.39 8.4E-06 33.4 3.9 32 92-123 87-126 (149)
30 PLN02835 oxidoreductase 90.1 1 2.2E-05 39.1 6.5 32 75-106 86-119 (539)
31 PF07732 Cu-oxidase_3: Multico 89.8 0.43 9.3E-06 32.9 3.3 24 90-117 69-93 (117)
32 PLN02792 oxidoreductase 89.7 0.74 1.6E-05 39.9 5.3 32 75-106 73-106 (536)
33 KOG1263 Multicopper oxidases [ 89.2 0.83 1.8E-05 39.9 5.2 33 73-106 83-118 (563)
34 PF00868 Transglut_N: Transglu 88.4 2.1 4.6E-05 29.5 6.0 77 46-124 29-117 (118)
35 cd00912 ML The ML (MD-2-relate 87.8 1.5 3.3E-05 30.3 5.0 40 84-123 15-55 (127)
36 PRK05461 apaG CO2+/MG2+ efflux 86.8 1.9 4E-05 30.4 4.9 50 92-143 72-123 (127)
37 PF03443 Glyco_hydro_61: Glyco 86.3 3.4 7.4E-05 31.7 6.6 40 102-141 136-183 (218)
38 PF07495 Y_Y_Y: Y_Y_Y domain; 86.1 1.2 2.6E-05 26.8 3.3 29 112-140 36-65 (66)
39 PLN02604 oxidoreductase 84.3 2.9 6.4E-05 36.4 6.0 16 91-106 100-116 (566)
40 COG2372 CopC Uncharacterized p 83.7 2.4 5.2E-05 29.8 4.2 30 102-131 87-116 (127)
41 PF13754 Big_3_4: Bacterial Ig 83.2 3.8 8.2E-05 24.1 4.5 34 107-141 17-50 (54)
42 COG2967 ApaG Uncharacterized p 82.8 4.2 9.1E-05 28.3 5.1 44 95-140 75-119 (126)
43 TIGR01480 copper_res_A copper- 82.0 2.1 4.5E-05 37.6 4.2 18 89-106 116-134 (587)
44 cd00916 Npc2_like Niemann-Pick 82.0 3.5 7.7E-05 28.5 4.6 41 84-124 15-56 (123)
45 PF01835 A2M_N: MG2 domain; I 80.1 11 0.00024 24.5 6.4 70 47-124 12-86 (99)
46 KOG3205 Rho GDP-dissociation i 80.0 23 0.0005 26.7 10.5 91 46-141 101-196 (200)
47 TIGR03390 ascorbOXfungal L-asc 79.8 4.9 0.00011 34.9 5.7 17 90-106 83-100 (538)
48 TIGR03389 laccase laccase, pla 79.3 4.9 0.00011 34.8 5.6 16 91-106 78-94 (539)
49 PF02221 E1_DerP2_DerF2: ML do 79.0 3.8 8.3E-05 28.1 4.1 33 42-74 84-116 (134)
50 PF12984 DUF3868: Domain of un 78.8 9.1 0.0002 26.3 5.8 31 33-67 29-60 (115)
51 smart00737 ML Domain involved 77.3 5.7 0.00012 26.8 4.5 34 42-75 70-103 (118)
52 PF13002 LDB19: Arrestin_N ter 77.3 12 0.00026 28.3 6.3 51 92-142 44-113 (191)
53 cd00918 Der-p2_like Several gr 76.5 5.9 0.00013 27.5 4.3 32 43-74 72-103 (120)
54 COG1470 Predicted membrane pro 75.1 35 0.00075 29.4 9.2 31 95-125 438-469 (513)
55 PF06775 Seipin: Putative adip 73.0 15 0.00033 27.5 6.2 38 95-132 53-94 (199)
56 PRK10965 multicopper oxidase; 72.5 6.8 0.00015 33.9 4.6 16 91-106 116-132 (523)
57 PF12690 BsuPI: Intracellular 72.0 5 0.00011 25.9 2.9 26 95-121 56-82 (82)
58 KOG3780 Thioredoxin binding pr 71.8 6.8 0.00015 32.4 4.4 30 95-124 102-139 (427)
59 PF13752 DUF4165: Domain of un 71.0 24 0.00052 24.7 6.2 45 97-142 77-121 (124)
60 PF04729 ASF1_hist_chap: ASF1 71.0 9.9 0.00021 27.7 4.5 99 33-133 3-108 (154)
61 PLN02191 L-ascorbate oxidase 70.7 13 0.00029 32.5 6.0 16 91-106 99-115 (574)
62 PF15432 Sec-ASP3: Accessory S 70.7 16 0.00035 25.7 5.4 36 93-131 47-84 (128)
63 PF02494 HYR: HYR domain; Int 70.6 7.5 0.00016 24.5 3.5 24 111-134 53-76 (81)
64 cd00917 PG-PI_TP The phosphati 67.6 18 0.00039 24.8 5.1 33 91-123 20-54 (122)
65 PF02402 Lysis_col: Lysis prot 65.2 14 0.00031 21.1 3.4 29 1-29 1-30 (46)
66 PRK12633 flgD flagellar basal 62.5 13 0.00028 28.7 4.0 21 111-131 169-189 (230)
67 PRK12634 flgD flagellar basal 62.5 14 0.00031 28.3 4.2 19 112-130 163-181 (221)
68 TIGR03711 acc_sec_asp3 accesso 62.2 22 0.00048 25.3 4.8 37 92-131 57-95 (135)
69 cd03451 FkbR2 FkbR2 is a Strep 61.9 47 0.001 22.8 6.5 41 92-132 89-134 (146)
70 PF04379 DUF525: Protein of un 61.8 15 0.00033 24.1 3.7 34 92-127 55-90 (90)
71 TIGR03388 ascorbase L-ascorbat 61.7 24 0.00053 30.6 5.9 16 91-106 77-93 (541)
72 PF13750 Big_3_3: Bacterial Ig 61.5 18 0.00038 26.3 4.3 35 96-130 104-138 (158)
73 PF03067 Chitin_bind_3: Chitin 61.5 40 0.00086 24.6 6.3 87 47-137 82-183 (183)
74 PF08138 Sex_peptide: Sex pept 61.0 2.7 5.8E-05 25.0 -0.0 25 1-26 1-27 (56)
75 COG1952 SecB Preprotein transl 58.1 15 0.00032 26.8 3.3 43 52-94 58-105 (157)
76 COG5137 Histone chaperone invo 56.5 57 0.0012 25.3 6.4 75 33-109 3-79 (279)
77 PF08139 LPAM_1: Prokaryotic m 56.2 3.5 7.6E-05 20.7 -0.1 13 1-13 7-19 (25)
78 PRK12812 flgD flagellar basal 54.6 21 0.00044 28.2 3.9 20 112-131 182-201 (259)
79 cd03446 MaoC_like MoaC_like 53.9 48 0.001 22.6 5.4 40 92-131 88-131 (140)
80 PF08737 Rgp1: Rgp1; InterPro 52.4 68 0.0015 27.0 6.9 48 94-141 114-172 (415)
81 cd03455 SAV4209 SAV4209 is a S 52.2 55 0.0012 22.0 5.4 36 93-130 78-114 (123)
82 cd03449 R_hydratase (R)-hydrat 52.1 49 0.0011 21.9 5.1 17 115-131 103-119 (128)
83 cd03441 R_hydratase_like (R)-h 51.8 67 0.0014 21.1 6.6 39 92-132 78-120 (127)
84 PF12245 Big_3_2: Bacterial Ig 51.8 50 0.0011 19.7 5.8 25 107-131 15-39 (60)
85 KOG3265 Histone chaperone invo 51.4 86 0.0019 24.5 6.7 74 33-109 3-79 (250)
86 PF11797 DUF3324: Protein of u 51.0 71 0.0015 22.4 5.9 44 95-141 86-130 (140)
87 PF14734 DUF4469: Domain of un 50.1 28 0.0006 23.5 3.5 23 102-124 64-86 (102)
88 cd03453 SAV4209_like SAV4209_l 49.0 45 0.00097 22.6 4.6 40 92-131 78-119 (127)
89 cd03454 YdeM YdeM is a Bacillu 47.0 59 0.0013 22.2 5.0 40 92-131 86-130 (140)
90 TIGR03786 strep_pil_rpt strept 46.4 67 0.0015 19.6 5.4 35 96-131 8-48 (64)
91 cd00146 PKD polycystic kidney 45.8 58 0.0013 19.9 4.4 18 113-130 55-72 (81)
92 PF11614 FixG_C: IG-like fold 45.5 91 0.002 20.9 5.8 37 95-131 70-108 (118)
93 PRK10883 FtsI repressor; Provi 44.7 40 0.00087 28.8 4.5 17 89-105 114-131 (471)
94 COG5294 Uncharacterized protei 44.6 23 0.0005 24.3 2.4 15 1-15 1-15 (113)
95 PF00801 PKD: PKD domain; Int 44.4 33 0.00072 20.6 3.0 16 114-129 51-66 (69)
96 PF11912 DUF3430: Protein of u 43.9 12 0.00026 27.8 1.1 26 93-118 110-135 (212)
97 PRK09810 entericidin A; Provis 42.8 9.7 0.00021 21.4 0.3 13 1-13 2-14 (41)
98 PF02018 CBM_4_9: Carbohydrate 42.0 64 0.0014 21.2 4.5 31 93-128 56-87 (131)
99 PRK13031 preprotein translocas 42.0 54 0.0012 23.8 4.1 44 51-94 54-102 (149)
100 TIGR02588 conserved hypothetic 41.1 1E+02 0.0022 21.6 5.2 35 114-148 48-82 (122)
101 PF11777 DUF3316: Protein of u 41.0 12 0.00026 25.5 0.6 14 1-14 1-14 (114)
102 KOG4680 Uncharacterized conser 40.9 46 0.00099 23.9 3.5 31 92-122 47-78 (153)
103 PF10029 DUF2271: Predicted pe 40.3 1.1E+02 0.0024 21.7 5.5 44 95-140 74-120 (139)
104 PF03170 BcsB: Bacterial cellu 39.4 1.7E+02 0.0037 25.6 7.7 77 47-135 41-118 (605)
105 cd03452 MaoC_C MaoC_C The C-t 39.1 1.2E+02 0.0026 21.0 5.6 41 92-132 86-130 (142)
106 cd00915 MD-1_MD-2 MD-1 and MD- 39.0 49 0.0011 23.4 3.5 31 42-73 81-113 (130)
107 PF05452 Clavanin: Clavanin; 38.8 17 0.00037 22.8 1.0 13 1-13 1-13 (80)
108 KOG4063 Major epididymal secre 38.3 70 0.0015 23.3 4.2 29 44-72 108-136 (158)
109 PRK13692 (3R)-hydroxyacyl-ACP 38.3 1.5E+02 0.0032 21.3 6.5 38 93-131 95-135 (159)
110 PF05345 He_PIG: Putative Ig d 38.0 80 0.0017 18.1 4.1 25 104-128 25-49 (49)
111 PRK13211 N-acetylglucosamine-b 37.3 2.8E+02 0.006 24.0 11.7 38 103-141 368-405 (478)
112 cd03447 FAS_MaoC FAS_MaoC, the 36.4 1.1E+02 0.0024 20.9 5.0 36 93-131 79-116 (126)
113 PRK13691 (3R)-hydroxyacyl-ACP 36.2 1.5E+02 0.0033 21.5 5.9 39 93-131 95-135 (166)
114 COG3470 Tpd Uncharacterized pr 35.8 1.8E+02 0.0039 21.4 8.4 103 20-126 24-144 (179)
115 PRK10449 heat-inducible protei 34.6 53 0.0011 23.2 3.1 16 1-16 1-16 (140)
116 PF12988 DUF3872: Domain of un 34.2 1.2E+02 0.0026 21.7 4.8 101 22-130 17-126 (137)
117 PRK06655 flgD flagellar basal 33.3 70 0.0015 24.6 3.8 11 95-105 167-177 (225)
118 KOG1903 Cell cycle-associated 33.0 28 0.00061 25.8 1.5 24 82-105 77-102 (217)
119 PF11153 DUF2931: Protein of u 32.5 66 0.0014 24.2 3.6 29 110-140 149-177 (216)
120 PF10731 Anophelin: Thrombin i 31.8 29 0.00064 21.2 1.2 25 1-25 1-27 (65)
121 PF13860 FlgD_ig: FlgD Ig-like 31.7 1.1E+02 0.0023 19.2 4.0 30 96-125 48-79 (81)
122 cd02859 AMPKbeta_GBD_like AMP- 31.6 1.3E+02 0.0029 18.7 4.6 11 68-78 14-24 (79)
123 PF11141 DUF2914: Protein of u 31.6 1.3E+02 0.0027 18.4 6.1 41 94-138 24-65 (66)
124 smart00089 PKD Repeats in poly 31.5 57 0.0012 19.8 2.6 15 114-128 54-68 (79)
125 TIGR03516 ppisom_GldI peptidyl 30.5 30 0.00066 25.5 1.4 16 45-60 85-100 (177)
126 TIGR03660 T1SS_rpt_143 T1SS-14 30.4 2E+02 0.0043 20.4 6.0 46 98-144 66-113 (137)
127 PF10989 DUF2808: Protein of u 30.4 1.3E+02 0.0029 21.2 4.7 32 92-125 96-129 (146)
128 PF13115 YtkA: YtkA-like 29.8 1.3E+02 0.0028 18.7 4.1 38 102-140 7-44 (86)
129 PRK10081 entericidin B membran 29.7 20 0.00043 20.9 0.2 12 1-12 2-13 (48)
130 PRK15287 putative minor fimbri 28.4 1.1E+02 0.0024 21.9 4.0 25 33-57 21-47 (158)
131 PF11033 ComJ: Competence prot 28.2 2.2E+02 0.0047 20.0 5.7 17 91-107 90-106 (125)
132 PF00879 Defensin_propep: Defe 28.1 28 0.0006 20.6 0.6 27 1-28 1-27 (52)
133 PF13199 Glyco_hydro_66: Glyco 28.0 2.8E+02 0.0061 24.5 7.0 86 47-141 8-96 (559)
134 PF06280 DUF1034: Fn3-like dom 27.6 1.1E+02 0.0024 20.3 3.7 35 95-129 66-104 (112)
135 TIGR03769 P_ac_wall_RPT actino 27.4 1E+02 0.0022 17.1 2.9 17 113-129 11-29 (41)
136 PRK09619 flgD flagellar basal 26.9 1E+02 0.0023 23.5 3.8 11 112-122 160-170 (218)
137 PF13452 MaoC_dehydrat_N: N-te 26.8 77 0.0017 21.4 2.8 38 94-131 87-129 (132)
138 PRK13792 lysozyme inhibitor; P 26.5 1.1E+02 0.0024 21.5 3.5 8 128-135 119-126 (127)
139 PF13473 Cupredoxin_1: Cupredo 26.4 51 0.0011 21.6 1.8 26 32-57 23-50 (104)
140 TIGR01165 cbiN cobalt transpor 26.2 33 0.00071 22.8 0.8 13 1-13 3-15 (91)
141 PF11106 YjbE: Exopolysacchari 25.8 33 0.00071 22.0 0.7 15 1-15 1-15 (80)
142 PF09551 Spore_II_R: Stage II 25.8 88 0.0019 22.1 3.0 26 112-137 93-119 (130)
143 PF07263 DMP1: Dentin matrix p 25.7 37 0.0008 29.2 1.2 13 1-13 1-13 (514)
144 PF02521 HP_OMP_2: Putative ou 25.5 1.8E+02 0.0039 25.0 5.3 28 1-28 1-28 (458)
145 PRK15209 long polar fimbrial p 25.1 1.2E+02 0.0027 21.8 3.8 12 1-12 1-12 (174)
146 COG5510 Predicted small secret 24.7 31 0.00068 19.6 0.4 9 1-9 2-10 (44)
147 smart00060 FN3 Fibronectin typ 24.4 1.4E+02 0.003 16.6 3.7 25 104-128 57-81 (83)
148 TIGR01655 yxeA_fam conserved h 23.9 85 0.0018 21.4 2.6 13 1-13 1-13 (114)
149 PF14673 DUF4459: Domain of un 23.5 82 0.0018 21.8 2.4 27 1-29 1-27 (159)
150 PF06157 DUF973: Protein of un 23.4 1.7E+02 0.0036 23.5 4.5 35 95-131 242-277 (285)
151 PF03627 PapG_N: PapG carbohyd 23.4 1.6E+02 0.0035 22.3 4.1 23 102-124 154-176 (226)
152 PF11771 DUF3314: Protein of u 23.2 2.6E+02 0.0057 20.3 5.0 82 19-101 32-141 (164)
153 PF03170 BcsB: Bacterial cellu 23.0 3.3E+02 0.0072 23.8 6.7 70 47-124 339-408 (605)
154 TIGR00809 secB protein-export 22.9 1.4E+02 0.003 21.4 3.5 43 52-94 52-99 (140)
155 COG3009 Uncharacterized protei 22.9 2.5E+02 0.0055 21.1 5.0 49 92-140 105-157 (190)
156 PRK09934 fimbrial-like adhesin 22.8 1.2E+02 0.0026 21.9 3.4 15 1-15 1-15 (171)
157 PF09544 DUF2381: Protein of u 22.5 2.1E+02 0.0046 22.9 4.9 36 92-129 243-279 (289)
158 TIGR03079 CH4_NH3mon_ox_B meth 22.1 1.8E+02 0.0039 24.4 4.5 94 34-131 34-137 (399)
159 TIGR03000 plancto_dom_1 Planct 22.0 2.2E+02 0.0049 18.1 5.3 19 92-110 33-52 (75)
160 PF00028 Cadherin: Cadherin do 21.8 1.3E+02 0.0029 18.7 3.1 24 104-127 1-24 (93)
161 PRK09733 putative fimbrial pro 21.1 1.3E+02 0.0028 21.8 3.3 24 33-56 27-52 (181)
162 PF15425 DUF4627: Domain of un 21.1 73 0.0016 24.0 1.9 42 95-138 84-129 (212)
163 TIGR02268 Myxococcus xanthus p 20.7 2E+02 0.0044 23.2 4.5 37 92-130 249-286 (295)
164 PF11940 DUF3458: Domain of un 20.4 2E+02 0.0044 23.8 4.6 35 97-131 2-41 (367)
165 PF03404 Mo-co_dimer: Mo-co ox 20.4 2.2E+02 0.0047 19.8 4.1 29 100-130 78-106 (131)
166 COG5633 Predicted periplasmic 20.2 3.1E+02 0.0068 19.1 4.7 15 1-15 1-15 (123)
No 1
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=198.28 Aligned_cols=135 Identities=47% Similarity=0.913 Sum_probs=127.8
Q ss_pred hhhhcccccceeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccC
Q 032014 13 VLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVS 92 (149)
Q Consensus 13 l~~~~~~~~~~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~ 92 (149)
+..+..++.++.+|+....+.++|++|.++|+|+.||++++|+++++..++|..|++.++++||||++.+++.|+|+.++
T Consensus 17 ~~~~i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdets 96 (153)
T KOG4680|consen 17 LTKPINGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETS 96 (153)
T ss_pred ccccccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeecccccccccc
Confidence 33456788999999987777999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEecccccc
Q 032014 93 CPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVS 147 (149)
Q Consensus 93 CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~~~~ 147 (149)
||++||+|....++.+|.+.|+|+|.+++++.|++|++++|+.|.|++.+..+|-
T Consensus 97 CPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisfsf~i~~g~~v~ 151 (153)
T KOG4680|consen 97 CPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISFSFDIGFGSSVA 151 (153)
T ss_pred CCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEEEEEeeccceec
Confidence 9999999999999999999999999999999999999999999999999888774
No 2
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=100.00 E-value=3.3e-32 Score=190.98 Aligned_cols=116 Identities=38% Similarity=0.708 Sum_probs=109.2
Q ss_pred eeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCc-EEEEEEEEceEEEccCCcCCCCcc-----CCCCC
Q 032014 23 FTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEV-----SCPIE 96 (149)
Q Consensus 23 ~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~-----~CPl~ 96 (149)
|++|+++..+.++|++|+++|||++||++++|+++|++++++++| ++.+.+++|+++++..+.|+|+.. .||++
T Consensus 1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~ 80 (122)
T cd00917 1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE 80 (122)
T ss_pred CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence 899998766799999999999999999999999999999999998 899999999999998899999963 89999
Q ss_pred CCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 032014 97 AGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 138 (149)
Q Consensus 97 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 138 (149)
+|++.|..++.||.++|+|+|+++|+++|+++++++|++|+|
T Consensus 81 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~Ci~~~~ 122 (122)
T cd00917 81 PGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSFSV 122 (122)
T ss_pred CCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCEEEEEEeeC
Confidence 999779999999999999999999999999999999999985
No 3
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=99.97 E-value=4.3e-29 Score=173.78 Aligned_cols=113 Identities=34% Similarity=0.668 Sum_probs=104.6
Q ss_pred eeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEce--EEEccCCcCCCCcc--CCCCCCC
Q 032014 23 FTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFG--IRVHSETHDICEEV--SCPIEAG 98 (149)
Q Consensus 23 ~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~--~~~~~~~~d~C~~~--~CPl~~G 98 (149)
|++|++. ..++.+++++||+++||++++++++|+++++++++++++.++++| +|++..+.|+|+.. .||+++|
T Consensus 1 ~~~C~~~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G 77 (118)
T smart00737 1 FKDCGSN---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKG 77 (118)
T ss_pred CccCCCC---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCCCC
Confidence 7899873 568999999999999999999999999999999999999999998 57777889999875 8999999
Q ss_pred c-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 032014 99 N-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 138 (149)
Q Consensus 99 ~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 138 (149)
+ |+|+.++.||..+|+|+|+++|+++|++|++++|+++++
T Consensus 78 ~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~~i~C~~~~~ 118 (118)
T smart00737 78 ETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEELACINFTV 118 (118)
T ss_pred eeEEEEEeeEccccCCCeEEEEEEEEEcCCCCEEEEEEccC
Confidence 7 899999999999999999999999999999999999874
No 4
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=99.96 E-value=3.2e-28 Score=172.11 Aligned_cols=121 Identities=32% Similarity=0.676 Sum_probs=106.8
Q ss_pred ccceeecCCCCCCcEEEeEEEEe-cCCCCCCCcEEEEEEE-EEeeEecCcEEEEEEEEce-EEEccC----CcCCCCc--
Q 032014 20 AIDFTYCDDEENFPLKVQQIKII-PDPVVTGKPAIFNISA-VTDRSVSGGKVMIEVRYFG-IRVHSE----THDICEE-- 90 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~v~i~-P~p~~~G~~~~i~~~~-~~~~~i~~~~~~v~~~~~~-~~~~~~----~~d~C~~-- 90 (149)
+++|++|+++.+..++|.+++++ ||+++||++++++++| +++++.+.+.+++.+.++| +++|.. ..|+|+.
T Consensus 1 ~v~~~~C~~~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~ 80 (134)
T PF02221_consen 1 AVNFKDCGDGKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLF 80 (134)
T ss_dssp EEEEEESSSCTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSC
T ss_pred CcEEEECCCcccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcc
Confidence 46899998755567899999999 8999999999999999 7777777778999999997 765543 3499993
Q ss_pred ---cCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 91 ---VSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 91 ---~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
.+||+++|+ |+|++++.+|..+|.|+|+++|+++|++|++++|++|+++|
T Consensus 81 ~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 81 GNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp CSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred cccccCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 499999997 79999999999999999999999999999999999999987
No 5
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=99.95 E-value=6.2e-28 Score=169.50 Aligned_cols=116 Identities=20% Similarity=0.356 Sum_probs=104.8
Q ss_pred eeecCCCC--CCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccC--CcCCCCc--cCCCCC
Q 032014 23 FTYCDDEE--NFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEE--VSCPIE 96 (149)
Q Consensus 23 ~~~C~~~~--~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~d~C~~--~~CPl~ 96 (149)
|++|+++. ...++|++|+-.||+++||++++++++|+++++++++++++.+.++|+++|.. +.|+|+. +.||++
T Consensus 1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~ 80 (123)
T cd00916 1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS 80 (123)
T ss_pred CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence 68998753 35788889999999999999999999999999999999999999999766544 7899987 899999
Q ss_pred CCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 032014 97 AGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 138 (149)
Q Consensus 97 ~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 138 (149)
+|+ |+|++++++++.+|.++|+++|+|+|++++.++|+.+++
T Consensus 81 ~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~~~~~Cf~~~~ 123 (123)
T cd00916 81 AGEDVTYTLSLPVLAPYPGISVTVEWELTDDDGQVLTCFQIPA 123 (123)
T ss_pred CCcEEEEEEeeeccccCCCeEEEEEEEEEcCCCCEEEEEEeeC
Confidence 997 999999999999999999999999998899999999974
No 6
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=99.95 E-value=5.2e-28 Score=168.98 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=105.3
Q ss_pred eeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEE--EccCCcCCCCccCCCCCCCc-
Q 032014 23 FTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIR--VHSETHDICEEVSCPIEAGN- 99 (149)
Q Consensus 23 ~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~--~~~~~~d~C~~~~CPl~~G~- 99 (149)
|++|+++....++|++|+-.||.++||++++++++|+++++.++.++++.+.++|++ +|....|+|+.+.||+++|+
T Consensus 1 f~~Cg~~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~ 80 (120)
T cd00918 1 FKDCGKGEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQH 80 (120)
T ss_pred CeeCCCCCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcE
Confidence 689988655678889999999999999999999999999999999999999999964 45557899998999999997
Q ss_pred EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 100 FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 100 ~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
|+|+++++|++.+|..+++|+|+|+|++| .++|+.++.+|
T Consensus 81 ~~y~~~~~V~~~~P~v~~~V~~~L~d~~g-~~~Cf~~~~~~ 120 (120)
T cd00918 81 YDIKYTWNVPAILPKIKAVVKAVLIGDHG-VLACGIVNGEV 120 (120)
T ss_pred EEEEEeeeccccCCCeEEEEEEEEEcCCC-cEEEEEEcCcC
Confidence 99999999999999999999999999888 49999998664
No 7
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=99.94 E-value=2.3e-26 Score=163.03 Aligned_cols=141 Identities=18% Similarity=0.311 Sum_probs=115.7
Q ss_pred CcceehhhhHHhhhhhc----ccccceeecCCCCC--CcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEE
Q 032014 1 MNRQLLLLFTFYVLVSS----IQAIDFTYCDDEEN--FPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 74 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~~----~~~~~~~~C~~~~~--~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 74 (149)
|+-.++..++++++++. +.++.+++|++..+ ..++|++|.-.||.++||++.+|+++|.++++.++.+..++..
T Consensus 1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~ 80 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGI 80 (158)
T ss_pred CchHHHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeee
Confidence 34333444444444443 44789999998533 4788999999999999999999999999999999998777766
Q ss_pred Ece-E--EEccCCcCCCCc------cCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEe
Q 032014 75 YFG-I--RVHSETHDICEE------VSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 75 ~~~-~--~~~~~~~d~C~~------~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~ 141 (149)
.+| + |+|....|+|.. ..||+++|+ |+|..+++|-..+|++...++|+|.|+||+..+|+.++.+|.
T Consensus 81 ~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~iew~L~D~d~~~~~Cf~ipakIk 157 (158)
T KOG4063|consen 81 TLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVIIEWQLQDQDNEKAVCFEIPAKIK 157 (158)
T ss_pred ecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccCCceeEEEEEEEecCCCCeEEEEEEEeeec
Confidence 655 5 556666788863 589999997 999999999999999999999999999999999999999986
No 8
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=99.94 E-value=1.5e-25 Score=158.03 Aligned_cols=112 Identities=19% Similarity=0.393 Sum_probs=98.6
Q ss_pred eeecCCCCCCcEEEeEEEEecC-----CCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccC--CcCCCCcc----
Q 032014 23 FTYCDDEENFPLKVQQIKIIPD-----PVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEEV---- 91 (149)
Q Consensus 23 ~~~C~~~~~~~~~i~~v~i~P~-----p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~d~C~~~---- 91 (149)
|++|+++. ..+.+|+++|| +++||++++++++|++++++.++++++.++++|+++|.. +.|+|+..
T Consensus 1 ~~~C~~~~---~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~ 77 (127)
T cd00912 1 LVDCSDNS---ANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKP 77 (127)
T ss_pred CcccCCCC---CceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCccc
Confidence 78998753 24556666665 999999999999999999999999999999999877765 78999853
Q ss_pred -CCCCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 032014 92 -SCPIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNGYQLTCFSFK 137 (149)
Q Consensus 92 -~CPl~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~i~C~~~~ 137 (149)
.||+++| +|+|+.+++||. .+|++.|+++|++.|++|++++|++++
T Consensus 78 ~~CPl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~~v~C~~~~ 126 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGEVLACAQAT 126 (127)
T ss_pred ccCCcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCCEEEEEecc
Confidence 8999999 599999999997 899999999999999999999999986
No 9
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=99.88 E-value=5.4e-22 Score=139.54 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=98.1
Q ss_pred cceeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCc-----cCCCC
Q 032014 21 IDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSCPI 95 (149)
Q Consensus 21 ~~~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~-----~~CPl 95 (149)
+-|++|+.- +.-+++++||.++||++++|+++|++++++.+..+++.+..+|+++|.....+|+. +.||+
T Consensus 11 ~~y~~cd~~-----~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~CP~ 85 (130)
T cd00915 11 FSYSSCDPM-----QDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFCGA 85 (130)
T ss_pred EEeeeCCch-----heeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcccccCCCcccccCCc
Confidence 468999763 44799999999999999999999999999999999999999998777322349985 68999
Q ss_pred CCCc-EEEE--EEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 032014 96 EAGN-FVLS--HAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFK 137 (149)
Q Consensus 96 ~~G~-~~~~--~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~ 137 (149)
++|+ |+|+ +++++.. +|.++|+++|+|.|++++.++|+++-
T Consensus 86 ~kGet~~Y~~p~slpi~~-yP~~~y~V~weL~d~~~~~l~Cf~~t 129 (130)
T cd00915 86 LKGETVYYVGPFSFKGIL-IPQGQYRCVAELIVENRETVACANFT 129 (130)
T ss_pred cCCceEEEeeeecccccc-cCCccEEEEEEEECCCCCEEEEEEEE
Confidence 9997 9999 8888888 99999999999999999999999985
No 10
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=99.87 E-value=7.9e-21 Score=137.25 Aligned_cols=121 Identities=23% Similarity=0.486 Sum_probs=99.6
Q ss_pred ccceeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCc-EEEEEEEE--ce-E-EEc------cC-CcCC
Q 032014 20 AIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRY--FG-I-RVH------SE-THDI 87 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~--~~-~-~~~------~~-~~d~ 87 (149)
...|++|+++.+ .++|++++++|+|+.+++++++++++++.+++.++ ++.+.++. .| | ++| +. ..|+
T Consensus 2 ~fsW~nCg~~~d-p~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~d~ 80 (162)
T cd00258 2 GFSWSNCDGESL-PAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYDNA 80 (162)
T ss_pred CcccccCCCCCC-ceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCcccccch
Confidence 457999998654 89999999999999999999999999999999998 67666543 33 2 443 33 3488
Q ss_pred CCcc---------------------CCCCCCCcEEEEEEE-Ee-----CCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 88 CEEV---------------------SCPIEAGNFVLSHAE-TL-----PGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 88 C~~~---------------------~CPl~~G~~~~~~~~-~i-----p~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
|+.+ +||+++|+|++..+. .| |.++++|+|++++.+ +++|++++|+++.+.+
T Consensus 81 C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL 159 (162)
T cd00258 81 CDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRITGIL-MADGKELGCGKFTFSL 159 (162)
T ss_pred hhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEEEEE-CCCCCEEEEEEEEEEE
Confidence 8842 699999999885543 55 888999999999998 6889999999999998
Q ss_pred ec
Q 032014 141 GF 142 (149)
Q Consensus 141 ~~ 142 (149)
..
T Consensus 160 ~~ 161 (162)
T cd00258 160 ES 161 (162)
T ss_pred ec
Confidence 64
No 11
>PF14558 TRP_N: ML-like domain
Probab=98.96 E-value=2e-08 Score=72.04 Aligned_cols=118 Identities=21% Similarity=0.403 Sum_probs=81.4
Q ss_pred ccceeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCc---cCCCCC
Q 032014 20 AIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE---VSCPIE 96 (149)
Q Consensus 20 ~~~~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~---~~CPl~ 96 (149)
...|.+|.+++....+.-++...| ..+++.+++.|+.+..-...++.+.+...|........|.|+. ..||+.
T Consensus 4 t~~f~~Cl~~s~~~~~~Fdv~~~~----~n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCPl~ 79 (141)
T PF14558_consen 4 TSSFSNCLDNSYFTASRFDVTYDP----DNRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCPLP 79 (141)
T ss_pred eCChhHcCCccccceEEEeEEEcC----CCCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccccc
Confidence 457999988754445555555566 3558888888885533222346677776777777889999994 479999
Q ss_pred CCcEEEEEEEEe---------CCC---CCCeEEEEEEEEEeC-CCCEEEEEEEEEEEe
Q 032014 97 AGNFVLSHAETL---------PGY---TPPGVYTLKMKMIGK-NGYQLTCFSFKFKIG 141 (149)
Q Consensus 97 ~G~~~~~~~~~i---------p~~---~P~g~y~v~~~l~d~-~~~~i~C~~~~~~i~ 141 (149)
||.+....+..+ |.+ +|.-.-++++++.+. .+++++|++..+.=+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~~~~~~iaCv~a~ltng 137 (141)
T PF14558_consen 80 PGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDTDTGTQIACVQATLTNG 137 (141)
T ss_pred ccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccCCCCCEEEEEEEEEECC
Confidence 997655544444 322 355556678888887 688999999987643
No 12
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=97.68 E-value=0.0021 Score=45.59 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=67.1
Q ss_pred EEeEEEEec----C-CCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCc-----cCCCCCCC--cEEE
Q 032014 35 KVQQIKIIP----D-PVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSCPIEAG--NFVL 102 (149)
Q Consensus 35 ~i~~v~i~P----~-p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~-----~~CPl~~G--~~~~ 102 (149)
.|+..++.. | ..++|+++.|++.++.+..+.+-++.+.-.+.+-. -.....-|.. ..=.+..| .|.+
T Consensus 16 ~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (132)
T PF15418_consen 16 VITLNEIGAFPENCKVATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDF 94 (132)
T ss_pred EEEeeecccCCCCCeEEecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeE
Confidence 455555533 2 35799999999999998888777666643322210 0001111211 00033444 4899
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 103 SHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 103 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
+..+.||..+++|.|++.++++|+.|.+.. ....++|
T Consensus 95 h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~-~~~~i~I 131 (132)
T PF15418_consen 95 HEHIDIPADAPAGDYHFMITVTDAAGNQTE-EERSIKI 131 (132)
T ss_pred EEeeeCCCCCCCcceEEEEEEEECCCCEEE-EEEEEEE
Confidence 999999999999999999999999998753 4444443
No 13
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=96.89 E-value=0.027 Score=41.39 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=63.6
Q ss_pred cceeecCCCCC------CcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcE---EEEEEEE---ceE-E--EccCCc
Q 032014 21 IDFTYCDDEEN------FPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGK---VMIEVRY---FGI-R--VHSETH 85 (149)
Q Consensus 21 ~~~~~C~~~~~------~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~---~~v~~~~---~~~-~--~~~~~~ 85 (149)
-.|++|.++++ ..+.++++++.. -++.++++...+..-+++-+. +.+.+.. |-| | +-....
T Consensus 11 ~ifs~C~n~~pg~~~i~~~~D~S~l~~~~----d~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~~ 86 (164)
T smart00675 11 DLYSPCTDAPPGNIGLREAFDISNLVVDM----DPDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMATP 86 (164)
T ss_pred cccccCCCCCCCccchhhccchhheEEEE----cCCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeecc
Confidence 45899988643 356777888875 456678887777777885442 3444432 334 2 334578
Q ss_pred CCCCcc-----------------------CCCCCCCc-EEE---EEEEEe---CCCCCCeEEEEEEEEE
Q 032014 86 DICEEV-----------------------SCPIEAGN-FVL---SHAETL---PGYTPPGVYTLKMKMI 124 (149)
Q Consensus 86 d~C~~~-----------------------~CPl~~G~-~~~---~~~~~i---p~~~P~g~y~v~~~l~ 124 (149)
|.|+.+ .||-.||. +.+ ...+.+ +.....|+|++.+.+.
T Consensus 87 dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~v~~~~ 155 (164)
T smart00675 87 DFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKAVVTFE 155 (164)
T ss_pred ChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEEEEEEE
Confidence 999842 69999996 543 233333 4444569888877765
No 14
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=96.78 E-value=0.0038 Score=40.77 Aligned_cols=35 Identities=29% Similarity=0.727 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEEE-E---EEeCCCCCCeEEEEEEEEEeC
Q 032014 92 SCPIEAGNFVLSH-A---ETLPGYTPPGVYTLKMKMIGK 126 (149)
Q Consensus 92 ~CPl~~G~~~~~~-~---~~ip~~~P~g~y~v~~~l~d~ 126 (149)
.||+.+|.|.++- . ..+|..+|.|.|.+++++...
T Consensus 41 ~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~~~~~~~ 79 (93)
T smart00697 41 TCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLNLTFFFG 79 (93)
T ss_pred CCCCcCCeEEEEeeEeCcccCCccCCCeeEEEEEEEEcC
Confidence 7999999865533 2 367889999999999999853
No 15
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=96.66 E-value=0.035 Score=38.47 Aligned_cols=89 Identities=17% Similarity=0.342 Sum_probs=54.6
Q ss_pred cEEEeEEEEecC------CCCCCCcEEEEEEEEEeeEecCcEEEEEEEE-ceEEEccCCcCCCCccCCCC-CCCcEEEEE
Q 032014 33 PLKVQQIKIIPD------PVVTGKPAIFNISAVTDRSVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPI-EAGNFVLSH 104 (149)
Q Consensus 33 ~~~i~~v~i~P~------p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~~~~~~~d~C~~~~CPl-~~G~~~~~~ 104 (149)
.++|.++.+... .+..|+++.+++++.+.+++....+.+.++- .|..+...+.. .....-+. ++|.+++++
T Consensus 12 ~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t~-~~~~~~~~~~~g~~~~~~ 90 (142)
T PF14524_consen 12 EARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNTY-DSGFPIPLSEGGTYEVTF 90 (142)
T ss_dssp SEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEHH-HHT--EEE-TT-EEEEEE
T ss_pred CEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECcc-ccCccccccCCCEEEEEE
Confidence 678899888873 3578999999999999999887665555432 34444332111 11111122 266677776
Q ss_pred EEEeCCCCCCeEEEEEEEEE
Q 032014 105 AETLPGYTPPGVYTLKMKMI 124 (149)
Q Consensus 105 ~~~ip~~~P~g~y~v~~~l~ 124 (149)
+++.+ +.+|.|.+.+.+.
T Consensus 91 ~i~~~--L~~G~Y~i~v~l~ 108 (142)
T PF14524_consen 91 TIPKP--LNPGEYSISVGLG 108 (142)
T ss_dssp EEE----B-SEEEEEEEEEE
T ss_pred EEcCc--cCCCeEEEEEEEE
Confidence 66666 7789999999994
No 16
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.09 E-value=0.087 Score=34.27 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=51.9
Q ss_pred EEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCc-EEEEEEEEeCCCC
Q 032014 34 LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGN-FVLSHAETLPGYT 112 (149)
Q Consensus 34 ~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~ 112 (149)
+.| .+...|..+..|+++++++...=........+.+.+..++-.+ ..... . .|.||+ .++++++..+
T Consensus 4 L~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i-~----~L~~g~~~~v~~~~~~~--- 72 (101)
T PF07705_consen 4 LTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV--STVTI-P----SLAPGESETVTFTWTPP--- 72 (101)
T ss_dssp EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--EEEEE-S----EB-TTEEEEEEEEEE-S---
T ss_pred EEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee--ccEEE-C----CcCCCcEEEEEEEEEeC---
Confidence 456 7788898899999999999876554444555677776666543 11111 2 378996 7777777777
Q ss_pred CCeEEEEEEEEEeCC
Q 032014 113 PPGVYTLKMKMIGKN 127 (149)
Q Consensus 113 P~g~y~v~~~l~d~~ 127 (149)
-+|.|++++.+ |.+
T Consensus 73 ~~G~~~i~~~i-D~~ 86 (101)
T PF07705_consen 73 SPGSYTIRVVI-DPD 86 (101)
T ss_dssp S-CEEEEEEEE-STT
T ss_pred CCCeEEEEEEE-eeC
Confidence 56999999987 443
No 17
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.54 E-value=0.068 Score=33.94 Aligned_cols=72 Identities=15% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEEEEeeE--ecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEE
Q 032014 47 VTGKPAIFNISAVTDRS--VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKM 123 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~--i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l 123 (149)
.+|+.+++++.+.-... +....+.+.+ -.||.+.... .... .|.||+ .++++.+.+|...++|.|.+++++
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~----~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASP----ASVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EE----EEE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCc----cccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 46888888888765432 2222333332 2344311100 0122 589997 899999999999999999999886
Q ss_pred E
Q 032014 124 I 124 (149)
Q Consensus 124 ~ 124 (149)
.
T Consensus 76 ~ 76 (78)
T PF10633_consen 76 R 76 (78)
T ss_dssp E
T ss_pred E
Confidence 4
No 18
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects. Their function is unknown.
Probab=95.29 E-value=0.024 Score=36.19 Aligned_cols=28 Identities=36% Similarity=0.917 Sum_probs=22.0
Q ss_pred CCCCCCCcEEEE-EE---EEeCCCCCCeEEEE
Q 032014 92 SCPIEAGNFVLS-HA---ETLPGYTPPGVYTL 119 (149)
Q Consensus 92 ~CPl~~G~~~~~-~~---~~ip~~~P~g~y~v 119 (149)
.||+++|.|.++ .. ..+|..+|+|.|.+
T Consensus 50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i 81 (81)
T PF06477_consen 50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI 81 (81)
T ss_pred CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence 699999987654 23 36999999999974
No 19
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=94.76 E-value=0.21 Score=33.14 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=22.8
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 103 SHAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 103 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
++.+.+|...++|.|+|+|+....||..+
T Consensus 60 ~~~~~l~~~l~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 60 TLTVPLPPPLPPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp EEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred EEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence 56678888899999999999999999876
No 20
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=94.74 E-value=0.38 Score=36.47 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=57.2
Q ss_pred CCCCCcEEEEEEEEEeeEecCc-EEEEEEEEceEEEccCCcCCCCccCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEEEE
Q 032014 46 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLKMK 122 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip~-~~P~g~y~v~~~ 122 (149)
++-|....+.+.|.+.+++-+| ...-.++-+|+++-.... .-+ ...|- ...|++++.- ..|+ ++-.|+|+++.+
T Consensus 103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~-miG-sy~P~-~e~y~~~~p~eeaPsG~laRG~Y~aks~ 179 (200)
T PF02115_consen 103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREE-MIG-SYAPQ-TEPYEKTFPEEEAPSGMLARGSYTAKSK 179 (200)
T ss_dssp EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEE-EEE-EE--E-SSEEEEEEEEEE--BSTTT-EEEEEEEE
T ss_pred ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccce-eee-ccCCC-CcceEEeCcCccCCCceeEeeeeeEEEE
Confidence 4678888999999999886555 555556678887643322 111 12332 2236665543 5665 567799999999
Q ss_pred EEeCCCCEEEEEEEEEEEec
Q 032014 123 MIGKNGYQLTCFSFKFKIGF 142 (149)
Q Consensus 123 l~d~~~~~i~C~~~~~~i~~ 142 (149)
+.|+|++...=++-.|+|..
T Consensus 180 f~DdD~~~~l~~~w~feI~K 199 (200)
T PF02115_consen 180 FVDDDKNVHLEWEWSFEIKK 199 (200)
T ss_dssp EEETTSSECEEEEEEEEEES
T ss_pred EEeCCCcEEEEEEEEEEEec
Confidence 99988877656666676654
No 21
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=94.66 E-value=0.14 Score=44.96 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=37.2
Q ss_pred CcEEEeEEEEecCCCCCCCcEEEEEEEEEeeE---ecCc-EEEEEEE----------EceEEEcc-CCcCCCCccCCCCC
Q 032014 32 FPLKVQQIKIIPDPVVTGKPAIFNISAVTDRS---VSGG-KVMIEVR----------YFGIRVHS-ETHDICEEVSCPIE 96 (149)
Q Consensus 32 ~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~---i~~~-~~~v~~~----------~~~~~~~~-~~~d~C~~~~CPl~ 96 (149)
+.++|+...++|+-.... .-.+.+.+..... +..| ++.+.+. +.|+.... ...|.=..++||+.
T Consensus 30 y~~~v~~~~~~pdg~~~~-~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~ 108 (596)
T PLN00044 30 YDWEVSYVSAAPLGGVKK-QEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIP 108 (596)
T ss_pred EEEEEEEEEEccCCCcee-eEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcC
Confidence 567889999988531111 1123333332221 2233 2444432 23332221 22343334799999
Q ss_pred CCc-EEEEEEE
Q 032014 97 AGN-FVLSHAE 106 (149)
Q Consensus 97 ~G~-~~~~~~~ 106 (149)
||+ |+|++..
T Consensus 109 PG~sftY~F~~ 119 (596)
T PLN00044 109 AGWNWTYQFQV 119 (596)
T ss_pred CCCcEEEEEEe
Confidence 997 7777765
No 22
>PRK10301 hypothetical protein; Provisional
Probab=93.71 E-value=0.13 Score=36.07 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=23.9
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 104 HAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 104 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
++++++...++|.|+|+|+....||..+
T Consensus 88 ~~v~l~~~L~~G~YtV~Wrvvs~DGH~~ 115 (124)
T PRK10301 88 LIVPLADSLKPGTYTVDWHVVSVDGHKT 115 (124)
T ss_pred EEEECCCCCCCccEEEEEEEEecCCCcc
Confidence 4667777789999999999999998865
No 23
>PLN02168 copper ion binding / pectinesterase
Probab=93.58 E-value=0.22 Score=43.27 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=38.3
Q ss_pred CcEEEeEEEEecCC------------------CCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccC-CcCCCCccC
Q 032014 32 FPLKVQQIKIIPDP------------------VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE-THDICEEVS 92 (149)
Q Consensus 32 ~~~~i~~v~i~P~p------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~d~C~~~~ 92 (149)
+.++|+..++.|+- .++|+++.|++.=.+++. ..+.+-|+..+.. ..|.=-+++
T Consensus 29 ~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~-------ttiHWHGl~~~~~~~~DGv~gtQ 101 (545)
T PLN02168 29 YQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEP-------FLMTWNGLQLRKNSWQDGVRGTN 101 (545)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCC-------ccEeeCCccCCCCCCcCCCCCCc
Confidence 45678888888762 134555555544222211 1233455544433 234422378
Q ss_pred CCCCCCc-EEEEEEE
Q 032014 93 CPIEAGN-FVLSHAE 106 (149)
Q Consensus 93 CPl~~G~-~~~~~~~ 106 (149)
||+.||+ |+|+++.
T Consensus 102 cpI~PG~sftY~F~~ 116 (545)
T PLN02168 102 CPILPGTNWTYRFQV 116 (545)
T ss_pred CCCCCCCcEEEEEEe
Confidence 9999997 7777765
No 24
>PLN02991 oxidoreductase
Probab=93.34 E-value=0.18 Score=43.79 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=37.7
Q ss_pred CcEEEeEEEEecCC------------------CCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEc-cCCcCCCCccC
Q 032014 32 FPLKVQQIKIIPDP------------------VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVH-SETHDICEEVS 92 (149)
Q Consensus 32 ~~~~i~~v~i~P~p------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~-~~~~d~C~~~~ 92 (149)
+.++|+...++|+- ..+|+++.|++.=.+++. ..+.+-|+... ....|.=..+.
T Consensus 31 ~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~-------ttiHWHGi~q~~~~~~DGv~~tQ 103 (543)
T PLN02991 31 FEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEP-------FLISWSGIRNWRNSYQDGVYGTT 103 (543)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCC-------ccEEECCcccCCCccccCCCCCC
Confidence 46778888888862 134444444443222211 12334555432 22345433478
Q ss_pred CCCCCCc-EEEEEEE
Q 032014 93 CPIEAGN-FVLSHAE 106 (149)
Q Consensus 93 CPl~~G~-~~~~~~~ 106 (149)
|||.||+ |+|++..
T Consensus 104 cpI~PG~sftY~F~~ 118 (543)
T PLN02991 104 CPIPPGKNYTYALQV 118 (543)
T ss_pred CccCCCCcEEEEEEe
Confidence 9999997 7777765
No 25
>PLN02354 copper ion binding / oxidoreductase
Probab=93.23 E-value=0.18 Score=43.86 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=36.5
Q ss_pred CcEEEeEEEEecCCC------------------CCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEcc-CCcCCCCccC
Q 032014 32 FPLKVQQIKIIPDPV------------------VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHS-ETHDICEEVS 92 (149)
Q Consensus 32 ~~~~i~~v~i~P~p~------------------~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~-~~~d~C~~~~ 92 (149)
+.++|+..++.|+-. .+|+++.|++.=.+.+. ..+.+.|+.... ...|.=.++.
T Consensus 30 y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~-------ttiHWHGi~q~~~~~~DGv~~TQ 102 (552)
T PLN02354 30 FTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEP-------FLLTWSGIQQRKNSWQDGVPGTN 102 (552)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCC-------cccccccccCCCCcccCCCcCCc
Confidence 456788888887621 34444444443222211 122344443322 2244422378
Q ss_pred CCCCCCc-EEEEEEE
Q 032014 93 CPIEAGN-FVLSHAE 106 (149)
Q Consensus 93 CPl~~G~-~~~~~~~ 106 (149)
||+.||+ |+|+++.
T Consensus 103 cpI~PG~sf~Y~F~~ 117 (552)
T PLN02354 103 CPIPPGTNFTYHFQP 117 (552)
T ss_pred CCCCCCCcEEEEEEe
Confidence 9999997 8877763
No 26
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=92.06 E-value=0.67 Score=36.58 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=35.9
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEec
Q 032014 101 VLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 142 (149)
Q Consensus 101 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 142 (149)
-|+.++.+|..+|.|.|++++.+. ++|+.+.=.+.++++..
T Consensus 181 LFra~i~LPAnvp~G~Y~v~v~L~-r~G~vv~~~~t~l~V~K 221 (261)
T TIGR02186 181 LFRATLRLPANVPNGTHEVRAYLF-RGGVFIARTELALEIVK 221 (261)
T ss_pred eEEEeeecCCCCCCceEEEEEEEE-eCCEEEEEEEeEEEEEE
Confidence 467789999999999999999998 68999988888888764
No 27
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=91.94 E-value=1.8 Score=31.93 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=45.3
Q ss_pred eecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCcEEEE
Q 032014 24 TYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLS 103 (149)
Q Consensus 24 ~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~ 103 (149)
..|.++. ++.-.-+--......++.+-++|++.=+-......+.+.++|-.+|--+. ..+ -.|+
T Consensus 18 ~~C~~P~-----v~~ssytT~Da~i~t~~afi~EFsl~C~n~~~~~~LyAeV~Gk~~PVar~----------~~~-nkYQ 81 (167)
T PF05404_consen 18 ETCENPE-----VTSSSYTTTDATISTQTAFIAEFSLKCSNGAKNISLYAEVNGKILPVARS----------GDT-NKYQ 81 (167)
T ss_pred cccCCCc-----eeeeeeecCCceeEeeeEEEEEEEEEeCCCCcCccEEEEECCEEEEEEEc----------CCC-CceE
Confidence 5687752 22222222223345566677777775332122355666666643332211 111 2466
Q ss_pred EEEEeCC-CCCCeEEEEEEEEEeCCC
Q 032014 104 HAETLPG-YTPPGVYTLKMKMIGKNG 128 (149)
Q Consensus 104 ~~~~ip~-~~P~g~y~v~~~l~d~~~ 128 (149)
.+...+- ..++|.|.|++ .|++|
T Consensus 82 VSW~~e~k~a~sG~y~V~~--fDEeg 105 (167)
T PF05404_consen 82 VSWTEEHKKASSGTYEVKF--FDEEG 105 (167)
T ss_pred EEEEechhhccCCceEEEE--eChHH
Confidence 7777663 57899999876 56544
No 28
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=91.43 E-value=0.87 Score=35.40 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=33.8
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEec
Q 032014 101 VLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 142 (149)
Q Consensus 101 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 142 (149)
.|+.++.+|...|.|.|++++-+. +||+.+.=.+-++++..
T Consensus 156 lFra~i~LPanvp~G~Y~v~v~l~-rdG~vv~~~~~~l~V~K 196 (236)
T PF09608_consen 156 LFRARIPLPANVPPGDYTVRVYLF-RDGQVVASQETPLRVRK 196 (236)
T ss_pred eEEEEeEcCCCCCcceEEEEEEEE-ECCEEEEEEeeEEEEEE
Confidence 477889999999999999999998 67888766666666553
No 29
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=90.83 E-value=0.39 Score=33.38 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=18.5
Q ss_pred CCCCCCCcEEEEEEEEeCCCCCC--------eEEEEEEEE
Q 032014 92 SCPIEAGNFVLSHAETLPGYTPP--------GVYTLKMKM 123 (149)
Q Consensus 92 ~CPl~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l 123 (149)
..-+.+|+|+|.+++.||..+|+ ..|.+++.+
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l 126 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL 126 (149)
T ss_dssp -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence 35678999999999999988776 578888888
No 30
>PLN02835 oxidoreductase
Probab=90.13 E-value=1 Score=39.12 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=19.5
Q ss_pred EceEEEccC-CcCCCCccCCCCCCCc-EEEEEEE
Q 032014 75 YFGIRVHSE-THDICEEVSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 75 ~~~~~~~~~-~~d~C~~~~CPl~~G~-~~~~~~~ 106 (149)
+.|+..+.. ..|.=-++.||++||+ |+|++..
T Consensus 86 WHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~ 119 (539)
T PLN02835 86 WNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQT 119 (539)
T ss_pred eCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEE
Confidence 445544432 2344233789999997 7777664
No 31
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=89.79 E-value=0.43 Score=32.88 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=16.1
Q ss_pred ccCCCCCCCc-EEEEEEEEeCCCCCCeEE
Q 032014 90 EVSCPIEAGN-FVLSHAETLPGYTPPGVY 117 (149)
Q Consensus 90 ~~~CPl~~G~-~~~~~~~~ip~~~P~g~y 117 (149)
...||+.||+ ++|+ +.++. ++|.|
T Consensus 69 ~~~~~i~pG~~~~Y~--~~~~~--~~Gt~ 93 (117)
T PF07732_consen 69 VTQCPIAPGESFTYE--FTANQ--QAGTY 93 (117)
T ss_dssp TSGSSBSTTEEEEEE--EEESS--CSEEE
T ss_pred ccceeEEeecceeee--Eeeec--cccce
Confidence 4689999997 5554 45554 46655
No 32
>PLN02792 oxidoreductase
Probab=89.69 E-value=0.74 Score=39.94 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=20.3
Q ss_pred EceEEEccC-CcCCCCccCCCCCCCc-EEEEEEE
Q 032014 75 YFGIRVHSE-THDICEEVSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 75 ~~~~~~~~~-~~d~C~~~~CPl~~G~-~~~~~~~ 106 (149)
+.|+..+.. ..|.=..+.||+.||+ |+|++.+
T Consensus 73 WHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 73 WNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQV 106 (536)
T ss_pred CCCcccCCCCccCCCCCCcCccCCCCcEEEEEEe
Confidence 445544433 2454344789999997 7777764
No 33
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.17 E-value=0.83 Score=39.88 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEceEEEc-cCCcCCCC-ccCCCCCCCc-EEEEEEE
Q 032014 73 VRYFGIRVH-SETHDICE-EVSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 73 ~~~~~~~~~-~~~~d~C~-~~~CPl~~G~-~~~~~~~ 106 (149)
+.+.|+.-. ....|. . .++||++||+ |+|.+++
T Consensus 83 ihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 83 IHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTV 118 (563)
T ss_pred EEeccccccCCccccC-CccccCCcCCCCeEEEEEEe
Confidence 344554222 223477 4 3799999997 7666654
No 34
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=88.45 E-value=2.1 Score=29.50 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCCCCcEEEEEEEEEeeEecCcEEEEEEEEceE---------EEcc-CCcCCCCccCCCCC--CCcEEEEEEEEeCCCCC
Q 032014 46 VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGI---------RVHS-ETHDICEEVSCPIE--AGNFVLSHAETLPGYTP 113 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~---------~~~~-~~~d~C~~~~CPl~--~G~~~~~~~~~ip~~~P 113 (149)
+.||+.+++.+.|.-.-+-..-.+.+....|-- .+|- ...+.=+. ..=+. .| -++++++..|..+|
T Consensus 29 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~-~~~tv~V~spa~A~ 106 (118)
T PF00868_consen 29 VRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDG-NSVTVSVTSPANAP 106 (118)
T ss_dssp EETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEET-TEEEEEEE--TTS-
T ss_pred EECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCC-CEEEEEEECCCCCc
Confidence 579999999998876522223357777777621 1111 11111111 00011 12 25778889999999
Q ss_pred CeEEEEEEEEE
Q 032014 114 PGVYTLKMKMI 124 (149)
Q Consensus 114 ~g~y~v~~~l~ 124 (149)
-|+|++.++..
T Consensus 107 VG~y~l~v~~~ 117 (118)
T PF00868_consen 107 VGRYKLSVETK 117 (118)
T ss_dssp -EEEEEEEEEE
T ss_pred eEEEEEEEEEe
Confidence 99999988754
No 35
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=87.81 E-value=1.5 Score=30.26 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=33.0
Q ss_pred CcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEE
Q 032014 84 THDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKM 123 (149)
Q Consensus 84 ~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l 123 (149)
+...|...+||+..|. ++++.++.....+..++.++.+++
T Consensus 15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~ 55 (127)
T cd00912 15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMS 55 (127)
T ss_pred EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEE
Confidence 4567888899999996 999999988888877877777765
No 36
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=86.78 E-value=1.9 Score=30.38 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCC-CCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEecc
Q 032014 92 SCPI-EAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFG 143 (149)
Q Consensus 92 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~ 143 (149)
..|+ .||+ |+|+....+. .|.|.......+.+++|+.+-+.--+|.+..+
T Consensus 72 ~qP~L~PGe~F~Y~S~~~l~--tp~G~M~G~y~~~~~~G~~F~v~Ip~F~L~~P 123 (127)
T PRK05461 72 EQPVLAPGESFEYTSGAVLE--TPSGTMQGHYQMVDEDGERFEVPIPPFRLAVP 123 (127)
T ss_pred CCceECCCCCeEEeCCCCcc--CCCEEEEEEEEEEeCCCCEEEEEccCEEcCCC
Confidence 5776 8997 7776665555 68899999999999889987665555555443
No 37
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=86.32 E-value=3.4 Score=31.67 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=27.7
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeC------CCCE--EEEEEEEEEEe
Q 032014 102 LSHAETLPGYTPPGVYTLKMKMIGK------NGYQ--LTCFSFKFKIG 141 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~y~v~~~l~d~------~~~~--i~C~~~~~~i~ 141 (149)
.+.++.||+.+|+|.|-+|.++..= .|.+ ..|+.+.|.=.
T Consensus 136 ~~~~~~IP~~l~~G~YLlR~E~IaLH~a~~~~gaQfY~~Caqi~Vtg~ 183 (218)
T PF03443_consen 136 GSWTFTIPKNLPPGQYLLRHEIIALHSAGQPGGAQFYPSCAQIKVTGG 183 (218)
T ss_dssp CEEEEE--TTBBSEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEESS
T ss_pred CceEEEeCCCCCCCCceEEecceeeccCccCCCCEEhhhCEEEEEECC
Confidence 3567789999999999999998742 2456 58999887633
No 38
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=86.13 E-value=1.2 Score=26.78 Aligned_cols=29 Identities=34% Similarity=0.498 Sum_probs=18.0
Q ss_pred CCCeEEEEEEEEEeCCCCE-EEEEEEEEEE
Q 032014 112 TPPGVYTLKMKMIGKNGYQ-LTCFSFKFKI 140 (149)
Q Consensus 112 ~P~g~y~v~~~l~d~~~~~-i~C~~~~~~i 140 (149)
+|+|+|+++++..|.+|.. .....+.+.|
T Consensus 36 L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 36 LPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp --SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 5899999999999987653 2224444443
No 39
>PLN02604 oxidoreductase
Probab=84.33 E-value=2.9 Score=36.44 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.5
Q ss_pred cCCCCCCCc-EEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
+.||+.||+ |+|++..
T Consensus 100 tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 100 TQCPILPGETFTYEFVV 116 (566)
T ss_pred ccCccCCCCeEEEEEEc
Confidence 589999997 7776654
No 40
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=83.68 E-value=2.4 Score=29.85 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 102 LSHAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
-.+.+++|..+.+|.|++.|+....||...
T Consensus 87 ~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v 116 (127)
T COG2372 87 TQLEVPLPQPLKAGVYTVDWRVVSSDGHVV 116 (127)
T ss_pred cEEEecCcccCCCCcEEEEEEEEecCCcEe
Confidence 446778888999999999999999888765
No 41
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=83.17 E-value=3.8 Score=24.13 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=23.8
Q ss_pred EeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEe
Q 032014 107 TLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 107 ~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~ 141 (149)
.+|.. ..|.|+++++..|..|+.-.-....|.|.
T Consensus 17 t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~tiD 50 (54)
T PF13754_consen 17 TVPAL-ADGTYTITVTATDAAGNTSTSSSVTFTID 50 (54)
T ss_pred eCCCC-CCccEEEEEEEEeCCCCCCCccceeEEEe
Confidence 34544 69999999999999887644444444443
No 42
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=82.77 E-value=4.2 Score=28.34 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 95 IEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
++||+ |+|+.- .|-..|.|.......+.|++|+.+.=.--.|.+
T Consensus 75 l~PG~~y~YtSg--~~l~Tp~G~M~GhY~M~~e~G~~F~v~Ip~F~L 119 (126)
T COG2967 75 LAPGEEYQYTSG--CPLDTPSGTMQGHYEMIDEDGETFDVAIPVFRL 119 (126)
T ss_pred cCCCCceEEcCC--cCccCCcceEEEEEEEecCCCcEEEeecCceEe
Confidence 58996 666554 444588999999999999999886433333333
No 43
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=82.04 E-value=2.1 Score=37.63 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.6
Q ss_pred CccCCCCCCCc-EEEEEEE
Q 032014 89 EEVSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 89 ~~~~CPl~~G~-~~~~~~~ 106 (149)
..+.||+.||+ |+|++..
T Consensus 116 ~vt~~~I~PG~s~~Y~f~~ 134 (587)
T TIGR01480 116 GVSFAGIAPGETFTYRFPV 134 (587)
T ss_pred cccccccCCCCeEEEEEEC
Confidence 34579999997 7777664
No 44
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=82.01 E-value=3.5 Score=28.52 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=30.8
Q ss_pred CcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEE
Q 032014 84 THDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMI 124 (149)
Q Consensus 84 ~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~ 124 (149)
+-+.|...+|++..|+ .+++..+.-+...-.++..+.+.+.
T Consensus 15 ~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~ 56 (123)
T cd00916 15 RISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILL 56 (123)
T ss_pred EECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEEC
Confidence 3467988899999996 8888887655556667777777764
No 45
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=80.10 E-value=11 Score=24.47 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCCcEEEEEEEEEee----EecCcEEEEEEEE-ceEEEccCCcCCCCccCCCCCCCcEEEEEEEEeCCCCCCeEEEEEE
Q 032014 47 VTGKPAIFNISAVTDR----SVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKM 121 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~----~i~~~~~~v~~~~-~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~y~v~~ 121 (149)
++|+++.+++-..-.. ......+.+.+.- .|..+..... .. .-.-|. ++.++.+|...+.|.|++++
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~---~~---~~~~G~--~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV---NT---TNENGI--FSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE---EE---TTCTTE--EEEEEE--SS---EEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe---ee---eCCCCE--EEEEEECCCCCCCEeEEEEE
Confidence 5789888887654332 1222234454432 2332222211 10 013454 56678999999999999999
Q ss_pred EEE
Q 032014 122 KMI 124 (149)
Q Consensus 122 ~l~ 124 (149)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 975
No 46
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=80.01 E-value=23 Score=26.66 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEEEEEeeEecCc-EEEEEEEEceEEEccCCcCCCCccCCCCCCC--cEEEEEEE-EeCC-CCCCeEEEEE
Q 032014 46 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAG--NFVLSHAE-TLPG-YTPPGVYTLK 120 (149)
Q Consensus 46 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G--~~~~~~~~-~ip~-~~P~g~y~v~ 120 (149)
++-|....+.+.|.+.++|-+| ...=.++--|+.+-...+ +=+ . ..|- .|.|..-. +-|+ .+-.|+|.++
T Consensus 101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~-MlG-S---y~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~ 175 (200)
T KOG3205|consen 101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKY-MLG-S---YGPQAEPYEFVTPEEEAPSGMLARGSYSAK 175 (200)
T ss_pred eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhh-hcc-c---CCCCCcceeeeCCcccCCccceeecceeee
Confidence 4678889999999999999888 333344445665533322 111 1 2222 24442221 2232 2455899999
Q ss_pred EEEEeCCCCEEEEEEEEEEEe
Q 032014 121 MKMIGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 121 ~~l~d~~~~~i~C~~~~~~i~ 141 (149)
-.++|+|+..-.=.+-.|+|.
T Consensus 176 skF~DDDk~~hLe~~w~~~I~ 196 (200)
T KOG3205|consen 176 SKFTDDDKTCHLEWNWTFDIK 196 (200)
T ss_pred eEEecCCCceEEEEEEEEEEe
Confidence 999987766543444455554
No 47
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=79.79 E-value=4.9 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.7
Q ss_pred ccCCCCCCCc-EEEEEEE
Q 032014 90 EVSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 90 ~~~CPl~~G~-~~~~~~~ 106 (149)
.+.||+.||+ |+|++..
T Consensus 83 vTQcpI~PG~sf~Y~f~~ 100 (538)
T TIGR03390 83 ASQWPIPPGHFFDYEIKP 100 (538)
T ss_pred cccCCCCCCCcEEEEEEe
Confidence 4689999997 8777764
No 48
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=79.34 E-value=4.9 Score=34.82 Aligned_cols=16 Identities=31% Similarity=0.829 Sum_probs=12.8
Q ss_pred cCCCCCCCc-EEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
+.||+.||+ |+|++..
T Consensus 78 Tq~pI~PG~s~~Y~f~~ 94 (539)
T TIGR03389 78 TQCPIQPGQSYVYNFTI 94 (539)
T ss_pred ccCCcCCCCeEEEEEEe
Confidence 689999997 7776664
No 49
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=79.05 E-value=3.8 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=27.7
Q ss_pred ecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEE
Q 032014 42 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 74 (149)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 74 (149)
.+||+++|+..+.+.++.+......++..++++
T Consensus 84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~ 116 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWK 116 (134)
T ss_dssp TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEEcccceeeEEEEEEEE
Confidence 489999999999999999888888887666654
No 50
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=78.79 E-value=9.1 Score=26.29 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=22.2
Q ss_pred cEEEeEEEEecCCCCCCCcEEEEEEEEEee-EecCc
Q 032014 33 PLKVQQIKIIPDPVVTGKPAIFNISAVTDR-SVSGG 67 (149)
Q Consensus 33 ~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~-~i~~~ 67 (149)
.++|++.++. +.|+.+.++++..++. .+.+.
T Consensus 29 ~i~v~~~~~~----~~gd~L~V~m~idl~~l~v~s~ 60 (115)
T PF12984_consen 29 QIKVTNVSVE----KQGDSLHVDMDIDLSGLKVKSN 60 (115)
T ss_pred cEEEEeeEEE----EECCEEEEEEEEEecccccCCC
Confidence 5678888775 5799999988887753 34444
No 51
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=77.30 E-value=5.7 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.3
Q ss_pred ecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEE
Q 032014 42 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRY 75 (149)
Q Consensus 42 ~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~ 75 (149)
..||+.+|+.+..+..+.+......+++.+++.+
T Consensus 70 ~~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l 103 (118)
T smart00737 70 SKCPIEKGETVNYTNSLTVPGIFPPGKYTVKWEL 103 (118)
T ss_pred CCCCCCCCeeEEEEEeeEccccCCCeEEEEEEEE
Confidence 3799999999999999888887878776666543
No 52
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=77.27 E-value=12 Score=28.26 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCCCCCcEEEEEEEEeCCCCCC-----------eEEEEEEEEEeCC-------C-CEEEEEEEEEEEec
Q 032014 92 SCPIEAGNFVLSHAETLPGYTPP-----------GVYTLKMKMIGKN-------G-YQLTCFSFKFKIGF 142 (149)
Q Consensus 92 ~CPl~~G~~~~~~~~~ip~~~P~-----------g~y~v~~~l~d~~-------~-~~i~C~~~~~~i~~ 142 (149)
+..+.+|.++|.++.-||..+|+ ++|.+.+++...+ + .....++.+++|.+
T Consensus 44 ~t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~R 113 (191)
T PF13002_consen 44 PTTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKR 113 (191)
T ss_pred ccccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEE
Confidence 57899999999999999887665 4688888877622 2 23568888888876
No 53
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=76.49 E-value=5.9 Score=27.45 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=24.4
Q ss_pred cCCCCCCCcEEEEEEEEEeeEecCcEEEEEEE
Q 032014 43 PDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 74 (149)
Q Consensus 43 P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~ 74 (149)
-||+++|++.+.+.++.........++.++..
T Consensus 72 ~CPl~~G~~~~y~~~~~V~~~~P~v~~~V~~~ 103 (120)
T cd00918 72 KCPIKKGQHYDIKYTWNVPAILPKIKAVVKAV 103 (120)
T ss_pred eCCCcCCcEEEEEEeeeccccCCCeEEEEEEE
Confidence 49999999999999988766666555555543
No 54
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.06 E-value=35 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEe
Q 032014 95 IEAGN-FVLSHAETLPGYTPPGVYTLKMKMIG 125 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d 125 (149)
++||+ -+.+.++.+|+.+++|.|.++++...
T Consensus 438 L~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 438 LEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred cCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 68997 78999999999999999999999874
No 55
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=72.98 E-value=15 Score=27.47 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=32.3
Q ss_pred CCCCc-EEEEEEEEeCCC---CCCeEEEEEEEEEeCCCCEEE
Q 032014 95 IEAGN-FVLSHAETLPGY---TPPGVYTLKMKMIGKNGYQLT 132 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~---~P~g~y~v~~~l~d~~~~~i~ 132 (149)
+.+|+ |..+.++.+|.. .--|.+.+.+++.+++|+.+.
T Consensus 53 l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~ 94 (199)
T PF06775_consen 53 LPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLA 94 (199)
T ss_pred cCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEE
Confidence 57797 999999999975 455999999999999998864
No 56
>PRK10965 multicopper oxidase; Provisional
Probab=72.47 E-value=6.8 Score=33.94 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=12.2
Q ss_pred cCCCCCCCc-EEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
..||+.||+ |+|++..
T Consensus 116 pq~~I~PG~s~~Y~f~~ 132 (523)
T PRK10965 116 PQGIIAPGGKRTVTFTV 132 (523)
T ss_pred CCCCCCCCCEEEEEecc
Confidence 479999997 7776654
No 57
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=72.03 E-value=5 Score=25.87 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=15.7
Q ss_pred CCCCc-EEEEEEEEeCCCCCCeEEEEEE
Q 032014 95 IEAGN-FVLSHAETLPGYTPPGVYTLKM 121 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~g~y~v~~ 121 (149)
++||+ .+|+.+++.+... +|.|++++
T Consensus 56 l~pGe~~~~~~~~~~~~~~-~G~Y~~~a 82 (82)
T PF12690_consen 56 LEPGESLTYEETWDLKDLS-PGEYTLEA 82 (82)
T ss_dssp E-TT-EEEEEEEESS-----SEEEEEEE
T ss_pred ECCCCEEEEEEEECCCCCC-CceEEEeC
Confidence 78997 7777776666544 79999875
No 58
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=71.77 E-value=6.8 Score=32.39 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.0
Q ss_pred CCCCcEEEEEEEEeCCCCCC--------eEEEEEEEEE
Q 032014 95 IEAGNFVLSHAETLPGYTPP--------GVYTLKMKMI 124 (149)
Q Consensus 95 l~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l~ 124 (149)
+.+|.|+|.+.+.||..+|+ ++|.+++.+.
T Consensus 102 l~~G~~~~pF~~~LP~~~P~Sfeg~~G~irY~vk~~id 139 (427)
T KOG3780|consen 102 LPPGNYEFPFSFTLPLNLPPSFEGKFGHVRYFVKAEID 139 (427)
T ss_pred cCCCceEEeEeccCCCCCCCceeeCCceEEEEEEEEEe
Confidence 78999999999999988766 5889999875
No 59
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=71.04 E-value=24 Score=24.74 Aligned_cols=45 Identities=27% Similarity=0.497 Sum_probs=34.1
Q ss_pred CCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEec
Q 032014 97 AGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF 142 (149)
Q Consensus 97 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~ 142 (149)
-|+==|--++.+|.. ..|.|+++.++.|.+|..+.=-..++.|..
T Consensus 77 ~G~efYGk~ltlp~l-~dG~ytvk~eiL~s~g~vV~t~s~~~~IDt 121 (124)
T PF13752_consen 77 NGKEFYGKELTLPAL-GDGTYTVKSEILDSQGTVVQTYSYPFTIDT 121 (124)
T ss_pred CCceeeeeEEEeccC-CCCcEEEEEEeeccCCCEEEeeeEeEEEec
Confidence 354125566777776 689999999999999998877777776654
No 60
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=70.99 E-value=9.9 Score=27.69 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=53.9
Q ss_pred cEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCc-EEEEEEEEceEEEccCCcCCCCccCCCCCCCcEEEEEEEEeCC-
Q 032014 33 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPG- 110 (149)
Q Consensus 33 ~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~- 110 (149)
.+++.+|++.++|-.=-.++.++++|...+++.+. .+++.. .|.-.--..+.-+-...-=|+..|.+.|.++..-|.
T Consensus 3 ~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWkiiY-VgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd~ 81 (154)
T PF04729_consen 3 RVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKIIY-VGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPDP 81 (154)
T ss_dssp SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEEEE-ESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----G
T ss_pred eEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEEEE-EecccccCCcEEEeeEEECCCcceeEEEEEEccCCCh
Confidence 57899999998887888899999999999888755 454432 222110011111222234689999766666665553
Q ss_pred -CCCC----eEEEEEEEEEeCCCCEEEE
Q 032014 111 -YTPP----GVYTLKMKMIGKNGYQLTC 133 (149)
Q Consensus 111 -~~P~----g~y~v~~~l~d~~~~~i~C 133 (149)
.+|. |--.+-++.. -+|+++.=
T Consensus 82 ~~Ip~~dllGvTvillt~s-Y~~~EFiR 108 (154)
T PF04729_consen 82 SKIPPEDLLGVTVILLTCS-YRGQEFIR 108 (154)
T ss_dssp GGSSCCHHSEEEEEEEEEE-ETTEEEEE
T ss_pred hhCChhhccccEEEEEEEE-ECCeEEEE
Confidence 3553 4333444443 34666533
No 61
>PLN02191 L-ascorbate oxidase
Probab=70.69 E-value=13 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=12.8
Q ss_pred cCCCCCCCc-EEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
+.||+.||+ |+|++..
T Consensus 99 tq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 99 TQCAINPGETFTYKFTV 115 (574)
T ss_pred ccCCcCCCCeEEEEEEC
Confidence 679999997 7776654
No 62
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=70.65 E-value=16 Score=25.70 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=27.2
Q ss_pred CCC-CCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 93 CPI-EAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 93 CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
=|+ ++|+ |.+...+..- |.+..-+++.+.|..|+.+
T Consensus 47 LPlLk~G~~Y~l~~~~~~~---P~~svylki~F~dr~~e~i 84 (128)
T PF15432_consen 47 LPLLKRGHTYQLKFNIDVV---PENSVYLKIIFFDRQGEEI 84 (128)
T ss_pred CCEecCCCEEEEEEEEEEc---cCCeEEEEEEEEccCCCEe
Confidence 344 7786 7777776655 7888999999999888765
No 63
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=70.56 E-value=7.5 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCCCeEEEEEEEEEeCCCCEEEEE
Q 032014 111 YTPPGVYTLKMKMIGKNGYQLTCF 134 (149)
Q Consensus 111 ~~P~g~y~v~~~l~d~~~~~i~C~ 134 (149)
.+|.|.+.|+.+.+|..|..-.|.
T Consensus 53 ~f~~G~t~V~ytA~D~~GN~a~C~ 76 (81)
T PF02494_consen 53 LFPVGTTTVTYTATDAAGNSATCS 76 (81)
T ss_pred eEeeceEEEEEEEEECCCCEEEEE
Confidence 356799999999999999888884
No 64
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=67.57 E-value=18 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=25.6
Q ss_pred cCCCCCCCc-EEEEEEEEeCCCCCCe-EEEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAETLPGYTPPG-VYTLKMKM 123 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~~ip~~~P~g-~y~v~~~l 123 (149)
.+||+.+|+ ++++.++.....+..| +..+.++.
T Consensus 20 sP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~ 54 (122)
T cd00917 20 SPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKY 54 (122)
T ss_pred ECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEE
Confidence 378999996 9999999988888776 55555543
No 65
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=65.24 E-value=14 Score=21.06 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=16.0
Q ss_pred Ccceehh-hhHHhhhhhcccccceeecCCC
Q 032014 1 MNRQLLL-LFTFYVLVSSIQAIDFTYCDDE 29 (149)
Q Consensus 1 m~~~~~l-~~~~~l~~~~~~~~~~~~C~~~ 29 (149)
||.++.+ ++++.++++..++...+|=+++
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~iRDvqGG 30 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANYIRDVQGG 30 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcceecCCCc
Confidence 7744444 3333345555666666776654
No 66
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=62.54 E-value=13 Score=28.71 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=14.8
Q ss_pred CCCCeEEEEEEEEEeCCCCEE
Q 032014 111 YTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 111 ~~P~g~y~v~~~l~d~~~~~i 131 (149)
.+|.|.|++++...+.+|+.+
T Consensus 169 ~~~~G~Y~~~V~a~~~~G~~~ 189 (230)
T PRK12633 169 PLADGKYSITVSASDADAKPV 189 (230)
T ss_pred cCCCcceEEEEEEEeCCCcEE
Confidence 367788888887777666654
No 67
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=62.48 E-value=14 Score=28.33 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=11.9
Q ss_pred CCCeEEEEEEEEEeCCCCE
Q 032014 112 TPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 112 ~P~g~y~v~~~l~d~~~~~ 130 (149)
+|.|.|++++...|.+|+.
T Consensus 163 ~~~G~Yt~~v~a~~~~G~~ 181 (221)
T PRK12634 163 MAAGKYGVTATQTDTAGSK 181 (221)
T ss_pred CCCeeeEEEEEEEeCCCcE
Confidence 5667777766666555553
No 68
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=62.19 E-value=22 Score=25.29 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=27.0
Q ss_pred CCCC-CCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 92 SCPI-EAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 92 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
+=|+ +.|+ |.++..+. ..|.+.+-+++.+.|..++++
T Consensus 57 ~LPlLk~g~~Y~i~~n~~---~~P~~s~~~ki~F~dr~~~ei 95 (135)
T TIGR03711 57 SLPLLKRGQTYKLSLNAD---ASPEGSVYLKITFFDRQGEEI 95 (135)
T ss_pred CCcEEcCCCEEEEEEeee---eCCCceEEEEEEEeccCCcee
Confidence 4565 5565 66666655 457899999999999888775
No 69
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=61.88 E-value=47 Score=22.83 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=24.0
Q ss_pred CCCCCCCc-EEEEEEEE--eCC--CCCCeEEEEEEEEEeCCCCEEE
Q 032014 92 SCPIEAGN-FVLSHAET--LPG--YTPPGVYTLKMKMIGKNGYQLT 132 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~--ip~--~~P~g~y~v~~~l~d~~~~~i~ 132 (149)
.=|+.+|+ .+++..+. -+. .-..+-..++.+..|++|+.+.
T Consensus 89 ~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~ 134 (146)
T cd03451 89 PAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVL 134 (146)
T ss_pred cCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEE
Confidence 34888996 44443331 111 1123567778888888888753
No 70
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=61.80 E-value=15 Score=24.14 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCC-CCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCC
Q 032014 92 SCPI-EAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKN 127 (149)
Q Consensus 92 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~ 127 (149)
..|+ .||+ |+|+....+. .|.|.....+++.++|
T Consensus 55 ~~P~L~pGe~f~Y~S~~~l~--t~~G~M~G~y~~~~~~ 90 (90)
T PF04379_consen 55 QQPVLAPGESFEYTSGCPLS--TPSGSMEGSYTMVDED 90 (90)
T ss_dssp B--EE-TTEEEEEEEEEEES--SSEEEEEEEEEEEET-
T ss_pred cCceECCCCcEEEcCCCCcC--CCCEEEEEEEEEEECc
Confidence 4565 8997 7776666666 5789999999988764
No 71
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=61.70 E-value=24 Score=30.58 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=12.7
Q ss_pred cCCCCCCCc-EEEEEEE
Q 032014 91 VSCPIEAGN-FVLSHAE 106 (149)
Q Consensus 91 ~~CPl~~G~-~~~~~~~ 106 (149)
+.||+.||+ |+|.+..
T Consensus 77 tq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 77 TQCAINPGETFIYNFVV 93 (541)
T ss_pred ccCCcCCCCEEEEEEEc
Confidence 689999997 7776654
No 72
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=61.53 E-value=18 Score=26.26 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=25.8
Q ss_pred CCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 032014 96 EAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 96 ~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 130 (149)
..|.|.+.+...+|..-+.+.|++++++.|..|.+
T Consensus 104 ~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 104 GNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCceEEeecccccCCcCCCCeEEEEEEEEecCCCE
Confidence 34556665555566666678999999999988865
No 73
>PF03067 Chitin_bind_3: Chitin binding domain; InterPro: IPR004302 Entomopoxviruses are a class of insect viruses whose virions are embedded in cytoplasmic occlusion bodies. The major component of these protective complexes is a protein called spheroidin/spindolin. Intermolecular disulphide bonds have been shown to play major roles in the formation and structure of these viral occlusion bodies [] some of which are spindle body proteins.; GO: 0019028 viral capsid; PDB: 3UAM_E 2XWX_A 2LHS_A 2BEM_B 2BEN_B 4A02_A.
Probab=61.49 E-value=40 Score=24.61 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccC----CcCCCCccCCCC--------CCCcEEEEEEEEeCCCCCC
Q 032014 47 VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE----THDICEEVSCPI--------EAGNFVLSHAETLPGYTPP 114 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~----~~d~C~~~~CPl--------~~G~~~~~~~~~ip~~~P~ 114 (149)
++|+.+.|++..+++. ..+.+.+.+...++. +.. ..|+-....|.+ .++...|++++.||.. ..
T Consensus 82 ~~G~~i~~~~~~ta~H--~~g~~~~~itk~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lP~~-~~ 157 (183)
T PF03067_consen 82 TPGQTIDFKWNITAPH--GTGYFEFYITKPGWD-PTEPCLTWDDLELIPFCQYDNPGQDPGPADQTNYTMSVTLPDG-RC 157 (183)
T ss_dssp ESE-EEEEEEEESS-S---EEEEEEEEB-TT---TTS----GGGBESSESEEEEEEEEHHHSSSEEEE--EEEE-TT---
T ss_pred CCCCeEEEEEEEeccc--CCeeEEEEEcCCCCC-cCccccchhhccccCceeecCCCcCcCCCCCceEEEEEECCCC-Cc
Confidence 5677777777776654 244455555433331 111 112221111221 1344678889999988 68
Q ss_pred eEEEEEEEEEeCCCC--E-EEEEEEE
Q 032014 115 GVYTLKMKMIGKNGY--Q-LTCFSFK 137 (149)
Q Consensus 115 g~y~v~~~l~d~~~~--~-i~C~~~~ 137 (149)
|+..++|.=.-.+.. . ..|+++.
T Consensus 158 g~~Vl~~~W~~~~~~~E~F~~C~Dv~ 183 (183)
T PF03067_consen 158 GHCVLQWRWQRGDSWGETFYNCSDVT 183 (183)
T ss_dssp EEEEEEEEEEETTSSE-EEEEEEEEE
T ss_pred CCEEEEEEEEeccCCCCeEEeeEccC
Confidence 988888876544433 3 5888763
No 74
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=61.02 E-value=2.7 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=0.8
Q ss_pred CcceehhhhHHhhhhhcccc--cceeec
Q 032014 1 MNRQLLLLFTFYVLVSSIQA--IDFTYC 26 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~--~~~~~C 26 (149)
||+-++|++++|| +..+.. ++|++=
T Consensus 1 Mk~p~~llllvll-lGla~s~~wp~~~r 27 (56)
T PF08138_consen 1 MKTPIFLLLLVLL-LGLAQSWEWPWQRR 27 (56)
T ss_dssp ----------------------S---S-
T ss_pred CcchHHHHHHHHH-HHHHhcccccccCC
Confidence 8877777666664 443343 344443
No 75
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=58.09 E-value=15 Score=26.81 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred EEEEEEEEEeeEecCcE-EEEEEEEceE----EEccCCcCCCCccCCC
Q 032014 52 AIFNISAVTDRSVSGGK-VMIEVRYFGI----RVHSETHDICEEVSCP 94 (149)
Q Consensus 52 ~~i~~~~~~~~~i~~~~-~~v~~~~~~~----~~~~~~~d~C~~~~CP 94 (149)
+.+.+..++......-+ ..++++++|+ .++.+..+.|-+..||
T Consensus 58 feVvL~itv~ak~~~~~~F~~Ev~qaGvF~i~~i~~e~m~~~L~i~CP 105 (157)
T COG1952 58 FEVVLTVTVTAKLGEKTAFLCEVQQAGIFRIAGIPEEQMAHLLGIECP 105 (157)
T ss_pred eEEEEEEEEEEEcCCeeEEEEEEEEeeEEEEcCCCHHHhhhhhhccCc
Confidence 34444444444443222 5788888885 4456677888888897
No 76
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=56.54 E-value=57 Score=25.31 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=47.8
Q ss_pred cEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCc-EEEEEEEEce-EEEccCCcCCCCccCCCCCCCcEEEEEEEEeC
Q 032014 33 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFG-IRVHSETHDICEEVSCPIEAGNFVLSHAETLP 109 (149)
Q Consensus 33 ~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~-~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip 109 (149)
.+++.++.+..+|.+-|.+..|.++|.--+.+..+ .+++. |.| ..--..+.-+-.-+--|+..|...|.+...-|
T Consensus 3 iv~llsi~VlnnpaKf~DPykFeitFeClE~lK~dlEwklt--Yvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP 79 (279)
T COG5137 3 IVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCDLEWKLT--YVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPP 79 (279)
T ss_pred eeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCCceEEEE--EeeccccccchhhhhheeeccccccceeEEeecCCC
Confidence 57889999999999999999999999976666555 34443 333 32222222222234568888865555554433
No 77
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=56.24 E-value=3.5 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=7.6
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
||+++++++++..
T Consensus 7 mKkil~~l~a~~~ 19 (25)
T PF08139_consen 7 MKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHH
Confidence 3877666555543
No 78
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=54.61 E-value=21 Score=28.24 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=11.2
Q ss_pred CCCeEEEEEEEEEeCCCCEE
Q 032014 112 TPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 112 ~P~g~y~v~~~l~d~~~~~i 131 (149)
+|.|.|++++...+.+|+.+
T Consensus 182 ~~~G~Yt~~v~A~~~~G~~~ 201 (259)
T PRK12812 182 AGDGEYTIKAVYNNKNGEKI 201 (259)
T ss_pred CCCeeeEEEEEEEcCCCcEE
Confidence 45566666666555555443
No 79
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=53.93 E-value=48 Score=22.58 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=23.4
Q ss_pred CCCCCCCc-EEEEEEEE-e-CCCCC-CeEEEEEEEEEeCCCCEE
Q 032014 92 SCPIEAGN-FVLSHAET-L-PGYTP-PGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~-i-p~~~P-~g~y~v~~~l~d~~~~~i 131 (149)
.=|+.+|+ .+.+..+. + ++.-| .|..+.+.+..|++|+.+
T Consensus 88 ~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v 131 (140)
T cd03446 88 LNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVV 131 (140)
T ss_pred cCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEE
Confidence 34789997 54444432 2 11111 256677777788888865
No 80
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=52.40 E-value=68 Score=27.00 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCCCCc-EEEEEEEEeCCCCCC--------eEEEEEEEEEeCCCC--EEEEEEEEEEEe
Q 032014 94 PIEAGN-FVLSHAETLPGYTPP--------GVYTLKMKMIGKNGY--QLTCFSFKFKIG 141 (149)
Q Consensus 94 Pl~~G~-~~~~~~~~ip~~~P~--------g~y~v~~~l~d~~~~--~i~C~~~~~~i~ 141 (149)
-+.||+ -+|.+++.+|..+|+ ..|.+.+.+.-..+. ..-=+.||++|.
T Consensus 114 ~L~pge~k~f~~~~~lP~~lPPsy~g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~ 172 (415)
T PF08737_consen 114 RLAPGESKSFHFSFTLPKDLPPSYRGKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVL 172 (415)
T ss_pred EECCCCcEEEEEEEeCCCCCCCCCcCcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEe
Confidence 478997 889999999988877 356666655431222 333445555554
No 81
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=52.19 E-value=55 Score=21.98 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=18.7
Q ss_pred CCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 032014 93 CPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 93 CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 130 (149)
=|+.+|+ .+.+.+ +-..-+.....++.+..|++|+.
T Consensus 78 ~pv~~Gdtl~~~~~--v~~~~~~~~v~~~~~~~nq~G~~ 114 (123)
T cd03455 78 APLYAGDTLRFGGR--VTAKRDDEVVTVELWARNSEGDH 114 (123)
T ss_pred ccccCCCEEEEEEE--EEeeccCcEEEEEEEEEcCCCCE
Confidence 4677775 333333 22221222556666777777765
No 82
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=52.11 E-value=49 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=11.2
Q ss_pred eEEEEEEEEEeCCCCEE
Q 032014 115 GVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 115 g~y~v~~~l~d~~~~~i 131 (149)
+...++.+.+|++|+.+
T Consensus 103 ~~v~~~~~~~~~~g~~v 119 (128)
T cd03449 103 KRVTLETVCTNQNGEVV 119 (128)
T ss_pred CEEEEEEEEEeCCCCEE
Confidence 56667777777666653
No 83
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=51.77 E-value=67 Score=21.11 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCCCCCc-EEEEEEEEeCCCC---CCeEEEEEEEEEeCCCCEEE
Q 032014 92 SCPIEAGN-FVLSHAETLPGYT---PPGVYTLKMKMIGKNGYQLT 132 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~ip~~~---P~g~y~v~~~l~d~~~~~i~ 132 (149)
.=|+.+|+ .+.+.. +-... ..+...++.+..|++|+.+.
T Consensus 78 ~~Pv~~Gd~l~~~~~--v~~~~~~~~~~~v~~~~~~~n~~g~~v~ 120 (127)
T cd03441 78 LAPVFPGDTLRVEVE--VLGKRPSKGRGVVTVRTEARNQGGEVVL 120 (127)
T ss_pred eCCcCCCCEEEEEEE--EEEeeccCCCcEEEEEEEEEeCCCCEEE
Confidence 46888886 444333 22222 23667788888888777653
No 84
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=51.75 E-value=50 Score=19.68 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.9
Q ss_pred EeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 107 TLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 107 ~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
.+|..-..|.|+++++.+|..|..-
T Consensus 15 ~~P~~~~dg~yt~~v~a~D~AGN~~ 39 (60)
T PF12245_consen 15 VIPENDADGEYTLTVTATDKAGNTS 39 (60)
T ss_pred cccCccCCccEEEEEEEEECCCCEE
Confidence 4566555689999999999998764
No 85
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=51.38 E-value=86 Score=24.47 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=49.2
Q ss_pred cEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCc-EEEEEEEEceEEEccCCcC--CCCccCCCCCCCcEEEEEEEEeC
Q 032014 33 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHD--ICEEVSCPIEAGNFVLSHAETLP 109 (149)
Q Consensus 33 ~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d--~C~~~~CPl~~G~~~~~~~~~ip 109 (149)
.++|.+|.+.-+|-+=+.+++|.++|.--+.+..+ .+++.. .|.- -+..+| +=..+--|+..|.+.|.++..=|
T Consensus 3 ~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkliY-VGSa--~See~DQvLdsilVGPVP~G~~~FVf~AD~P 79 (250)
T KOG3265|consen 3 KVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKLIY-VGSA--ESEEYDQVLDSILVGPVPVGRHKFVFQADAP 79 (250)
T ss_pred eeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEEEE-eecc--ccchhhhhhhheeeccccccceEEEEecCCC
Confidence 57899999999998889999999999977666555 455432 2222 223332 11223578999976666665444
No 86
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=51.03 E-value=71 Score=22.45 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCCcEEEEEEEEeC-CCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEe
Q 032014 95 IEAGNFVLSHAETLP-GYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 95 l~~G~~~~~~~~~ip-~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~ 141 (149)
++|.. .|.+.+++. ..+++|+|++++++...+++- =++-+|+|.
T Consensus 86 mAPNS-~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W--~f~k~F~It 130 (140)
T PF11797_consen 86 MAPNS-NFNFPIPLGGKKLKPGKYTLKITAKSGKKTW--TFTKDFTIT 130 (140)
T ss_pred ECCCC-eEEeEecCCCcCccCCEEEEEEEEEcCCcEE--EEEEEEEEC
Confidence 46664 233344443 468899999999998654422 234455554
No 87
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=50.08 E-value=28 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.8
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEE
Q 032014 102 LSHAETLPGYTPPGVYTLKMKMI 124 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~y~v~~~l~ 124 (149)
-++.+.||..++.|.|+++++=.
T Consensus 64 s~l~~~lPa~L~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 64 SRLIFILPADLAAGEYTLEVRTQ 86 (102)
T ss_pred cEEEEECcCccCceEEEEEEEEE
Confidence 35667899999999999988744
No 88
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=48.99 E-value=45 Score=22.60 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=22.4
Q ss_pred CCCCCCCc-EEEEEEEE-eCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 92 SCPIEAGN-FVLSHAET-LPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~-ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
.=|+.+|+ .+.+..+. ....--.+..+++.+..|++|+.+
T Consensus 78 ~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v 119 (127)
T cd03453 78 TKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKK 119 (127)
T ss_pred CCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEE
Confidence 34778886 44443321 111112356777888888888763
No 89
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=47.04 E-value=59 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCCCCCCc-EEEEEEE--EeCC--CCCCeEEEEEEEEEeCCCCEE
Q 032014 92 SCPIEAGN-FVLSHAE--TLPG--YTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~--~ip~--~~P~g~y~v~~~l~d~~~~~i 131 (149)
.=|+.+|+ .+.+..+ .-+. ..-.|-.+++.+..|++|+.+
T Consensus 86 ~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v 130 (140)
T cd03454 86 PRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVV 130 (140)
T ss_pred CCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEE
Confidence 34888896 4444433 1211 112356778888888888864
No 90
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=46.42 E-value=67 Score=19.61 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCcEEEEEEEEeCCCCCC-----eEEEEEEEEEeC-CCCEE
Q 032014 96 EAGNFVLSHAETLPGYTPP-----GVYTLKMKMIGK-NGYQL 131 (149)
Q Consensus 96 ~~G~~~~~~~~~ip~~~P~-----g~y~v~~~l~d~-~~~~i 131 (149)
++|.|+|+.+..- ...+. -.|.+++...|. +|+..
T Consensus 8 ~~G~Y~YtV~E~~-g~~~gvtYD~~~~~vtV~V~~~~~G~L~ 48 (64)
T TIGR03786 8 KVGTYTYTITEVK-GKEPGVTYDTTVHTVTVTVTDDEQGKLV 48 (64)
T ss_pred CCeEEEEEEEEeC-CCCCCeEecCCEEEEEEEEEECCCCcEE
Confidence 5798888887643 33333 456788888875 44443
No 91
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=45.79 E-value=58 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=14.8
Q ss_pred CCeEEEEEEEEEeCCCCE
Q 032014 113 PPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 113 P~g~y~v~~~l~d~~~~~ 130 (149)
-+|.|+++++..|.+|..
T Consensus 55 ~~G~y~v~l~v~d~~g~~ 72 (81)
T cd00146 55 KPGTYTVTLTVTNAVGSS 72 (81)
T ss_pred CCcEEEEEEEEEeCCCCE
Confidence 369999999999877654
No 92
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=45.45 E-value=91 Score=20.86 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCCCc-EEEEEEEEeCCCC-CCeEEEEEEEEEeCCCCEE
Q 032014 95 IEAGN-FVLSHAETLPGYT-PPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~-P~g~y~v~~~l~d~~~~~i 131 (149)
+.||+ ..+.+.+.+|... ..+.-.+++++.|++++..
T Consensus 70 v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~ 108 (118)
T PF11614_consen 70 VPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEI 108 (118)
T ss_dssp E-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEE
T ss_pred ECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEE
Confidence 68897 8899999999864 5566688888886555543
No 93
>PRK10883 FtsI repressor; Provisional
Probab=44.70 E-value=40 Score=28.79 Aligned_cols=17 Identities=0% Similarity=-0.095 Sum_probs=12.0
Q ss_pred CccCCCCCCCc-EEEEEE
Q 032014 89 EEVSCPIEAGN-FVLSHA 105 (149)
Q Consensus 89 ~~~~CPl~~G~-~~~~~~ 105 (149)
++..+|+.||+ |+|.+.
T Consensus 114 ~g~~~~I~PG~~~~y~f~ 131 (471)
T PRK10883 114 GGPARMMSPNADWAPVLP 131 (471)
T ss_pred CCccccCCCCCeEEEEEe
Confidence 34679999997 666543
No 94
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.64 E-value=23 Score=24.34 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=10.0
Q ss_pred CcceehhhhHHhhhh
Q 032014 1 MNRQLLLLFTFYVLV 15 (149)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (149)
||+++.+++++.+++
T Consensus 1 MKkil~~ilall~~i 15 (113)
T COG5294 1 MKKILIGILALLLII 15 (113)
T ss_pred CcchHHHHHHHHHHH
Confidence 998877666555543
No 95
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=44.39 E-value=33 Score=20.57 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=14.2
Q ss_pred CeEEEEEEEEEeCCCC
Q 032014 114 PGVYTLKMKMIGKNGY 129 (149)
Q Consensus 114 ~g~y~v~~~l~d~~~~ 129 (149)
+|.|+|+++..|..|.
T Consensus 51 ~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 51 PGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SEEEEEEEEEEETTSE
T ss_pred CeEEEEEEEEEECCCC
Confidence 6999999999998775
No 96
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=43.86 E-value=12 Score=27.81 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=16.2
Q ss_pred CCCCCCcEEEEEEEEeCCCCCCeEEE
Q 032014 93 CPIEAGNFVLSHAETLPGYTPPGVYT 118 (149)
Q Consensus 93 CPl~~G~~~~~~~~~ip~~~P~g~y~ 118 (149)
+...+-.|.+..+..-++.+|+..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~p~ip~ns~v 135 (212)
T PF11912_consen 110 SSYSPSNYYYISSCSDNPYIPSNSYV 135 (212)
T ss_pred cccCCCCeEEEEEEecCCcCCCccEE
Confidence 44444446666666557777887773
No 97
>PRK09810 entericidin A; Provisional
Probab=42.83 E-value=9.7 Score=21.43 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=7.2
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
||+++.++++..+
T Consensus 2 Mkk~~~l~~~~~~ 14 (41)
T PRK09810 2 MKRLIVLVLLAST 14 (41)
T ss_pred hHHHHHHHHHHHH
Confidence 7876665543333
No 98
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=42.03 E-value=64 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=18.7
Q ss_pred CCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 032014 93 CPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNG 128 (149)
Q Consensus 93 CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~ 128 (149)
-++++|+ |++++.+..... -.+++++.+.++
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~-----~~~~~~~~~~~~ 87 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG-----GTVSVSLRDEDG 87 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS-----EEEEEEEEESST
T ss_pred eEecCCCEEEEEEEEEeCCC-----CEEEEEEEEcCC
Confidence 5678996 766666666544 555555555555
No 99
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=41.95 E-value=54 Score=23.75 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=26.6
Q ss_pred cEEEEEEEEEeeEecCcE-EEEEEEEceE-E---EccCCcCCCCccCCC
Q 032014 51 PAIFNISAVTDRSVSGGK-VMIEVRYFGI-R---VHSETHDICEEVSCP 94 (149)
Q Consensus 51 ~~~i~~~~~~~~~i~~~~-~~v~~~~~~~-~---~~~~~~d~C~~~~CP 94 (149)
...+.++.++.....+.+ ..++++++|+ . +|....+.+-...||
T Consensus 54 ~yEV~L~vtvta~~~~~t~FlvEv~qaGIF~i~nipee~~~~~L~i~CP 102 (149)
T PRK13031 54 TYETVLTLEVKVENDGMVAFEAEVKQAGIFTVANMQEAQIEHAKKAFCP 102 (149)
T ss_pred cEEEEEEEEEEEEeCCceEEEEEEeEeeEEEEcCCCHHHHHHHHhcCCc
Confidence 355555555555555555 4688999885 4 344455555566787
No 100
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=41.08 E-value=1e+02 Score=21.60 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=24.9
Q ss_pred CeEEEEEEEEEeCCCCEEEEEEEEEEEeccccccc
Q 032014 114 PGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSE 148 (149)
Q Consensus 114 ~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~~~~~ 148 (149)
.|.|.+.++.+|..|++..=+.+.-++..+..+.|
T Consensus 48 ~gqyyVpF~V~N~gg~TAasV~V~geL~~~~~v~E 82 (122)
T TIGR02588 48 TGQYYVPFAIHNLGGTTAAAVNIRGELRQAGAVVE 82 (122)
T ss_pred CCEEEEEEEEEeCCCcEEEEEEEEEEEccCCceeE
Confidence 46788888888877777777777777766544444
No 101
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.96 E-value=12 Score=25.50 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=8.6
Q ss_pred CcceehhhhHHhhh
Q 032014 1 MNRQLLLLFTFYVL 14 (149)
Q Consensus 1 m~~~~~l~~~~~l~ 14 (149)
||++++|++++++.
T Consensus 1 MKk~~ll~~~ll~s 14 (114)
T PF11777_consen 1 MKKIILLASLLLLS 14 (114)
T ss_pred CchHHHHHHHHHHH
Confidence 99776666444443
No 102
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=40.88 E-value=46 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEE
Q 032014 92 SCPIEAGN-FVLSHAETLPGYTPPGVYTLKMK 122 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~ 122 (149)
+=|..+|+ -+++.+.+.-..+-.|+|.|+++
T Consensus 47 PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~ 78 (153)
T KOG4680|consen 47 PNPPARGENATFSISGNTGETISEGKYVIEVS 78 (153)
T ss_pred CCCCCCCCccEEEEecccccEeeCCeEEEEEE
Confidence 66889997 88888888888888999998765
No 103
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.35 E-value=1.1e+02 Score=21.67 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=30.4
Q ss_pred CCCCcEEEEEE--EEeCCCCCCeEEEEEEEEEeCCCC-EEEEEEEEEEE
Q 032014 95 IEAGNFVLSHA--ETLPGYTPPGVYTLKMKMIGKNGY-QLTCFSFKFKI 140 (149)
Q Consensus 95 l~~G~~~~~~~--~~ip~~~P~g~y~v~~~l~d~~~~-~i~C~~~~~~i 140 (149)
..+|+|+++.. .......|.|.|++.++..-++|. .+ +.++|++
T Consensus 74 ~~~G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l--~~~~~~l 120 (139)
T PF10029_consen 74 RPPGKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGREL--VRIPFPL 120 (139)
T ss_pred CCCCccEEEEEccccccCccCCCcEEEEEEEEEEECCcEE--EEEEEEe
Confidence 46787666555 455567899999999998766654 55 4555555
No 104
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=39.43 E-value=1.7e+02 Score=25.62 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEe
Q 032014 47 VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIG 125 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d 125 (149)
..-+.+++++.+..+..+....-.+.+.++|.++.... +.+++ ...+.++.||..+-.|.-++++++..
T Consensus 41 ~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s~~----------l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~~ 110 (605)
T PF03170_consen 41 WVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGSIP----------LDAESAQPQTVTIPIPPALIKGFNRLTFEFIG 110 (605)
T ss_pred ccccceEEEEEEEECcccCCCcceEEEEECCEEeEEEe----------cCcCCCCceEEEEecChhhcCCceEEEEEEEe
Confidence 34556777777777777666655677778887664432 23332 35677888998777788888888875
Q ss_pred CCCCEEEEEE
Q 032014 126 KNGYQLTCFS 135 (149)
Q Consensus 126 ~~~~~i~C~~ 135 (149)
..... |..
T Consensus 111 ~~~~~--C~~ 118 (605)
T PF03170_consen 111 HYTDD--CED 118 (605)
T ss_pred cccCc--cCC
Confidence 43333 763
No 105
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=39.14 E-value=1.2e+02 Score=20.97 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCCCCCc-EEEEEEE-EeC-CCC-CCeEEEEEEEEEeCCCCEEE
Q 032014 92 SCPIEAGN-FVLSHAE-TLP-GYT-PPGVYTLKMKMIGKNGYQLT 132 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~-~ip-~~~-P~g~y~v~~~l~d~~~~~i~ 132 (149)
.=|+.+|+ .+.+.++ .+. ..- -.|..+++.++.|++|+.+.
T Consensus 86 ~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~ 130 (142)
T cd03452 86 LEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVA 130 (142)
T ss_pred CCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEE
Confidence 56899997 5444443 121 111 12567788888888888753
No 106
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=39.01 E-value=49 Score=23.37 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=23.4
Q ss_pred ecCCCCCCCcEEEE--EEEEEeeEecCcEEEEEE
Q 032014 42 IPDPVVTGKPAIFN--ISAVTDRSVSGGKVMIEV 73 (149)
Q Consensus 42 ~P~p~~~G~~~~i~--~~~~~~~~i~~~~~~v~~ 73 (149)
+-||+++|++++.. .++-..+ ...+.+.+..
T Consensus 81 s~CP~~kGet~~Y~~p~slpi~~-yP~~~y~V~w 113 (130)
T cd00915 81 SFCGALKGETVYYVGPFSFKGIL-IPQGQYRCVA 113 (130)
T ss_pred ccCCccCCceEEEeeeecccccc-cCCccEEEEE
Confidence 46999999999999 6666666 7777665554
No 107
>PF05452 Clavanin: Clavanin; InterPro: IPR008453 This family consists of clavanin proteins from the haemocytes of the invertebrate Styela clava (Sea squirt), a solitary tunicate. The family is made up of four alpha-helical antimicrobial peptides, clavanins A, B, C and D. The tunicate peptides resemble magainins in size, primary sequence and antibacterial activity. Synthetic clavanin A displays comparable antimicrobial activity to magainins and cecropins. The presence of alpha-helical antimicrobial peptides in the haemocytes of a urochordate suggests that such peptides are primeval effectors of innate immunity in the vertebrate lineage [].; GO: 0005576 extracellular region
Probab=38.77 E-value=17 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=8.3
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
|||++++++.+=|
T Consensus 1 mkt~ilillilgl 13 (80)
T PF05452_consen 1 MKTIILILLILGL 13 (80)
T ss_pred CceeehhHHHHhc
Confidence 8988776554333
No 108
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=38.32 E-value=70 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred CCCCCCCcEEEEEEEEEeeEecCcEEEEE
Q 032014 44 DPVVTGKPAIFNISAVTDRSVSGGKVMIE 72 (149)
Q Consensus 44 ~p~~~G~~~~i~~~~~~~~~i~~~~~~v~ 72 (149)
||+.+|++.+....+-..++-.+..+.++
T Consensus 108 CPl~age~ytY~~slpI~~~yP~v~v~ie 136 (158)
T KOG4063|consen 108 CPLSAGEDYTYLNSLPITENYPEVSVIIE 136 (158)
T ss_pred CcccCCCceEEEEEeeccccCCceeEEEE
Confidence 78899999998888876655555555544
No 109
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=38.27 E-value=1.5e+02 Score=21.26 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCCCCCc-EEEEEEEE-e-CCCCCCeEEEEEEEEEeCCCCEE
Q 032014 93 CPIEAGN-FVLSHAET-L-PGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 93 CPl~~G~-~~~~~~~~-i-p~~~P~g~y~v~~~l~d~~~~~i 131 (149)
=|+.+|+ ++.+..+. + ++. -.|-.+.+.+.+||+|+.+
T Consensus 95 ~PV~~GDtL~~~~eV~~~~~~~-~~giv~~~~~v~Nq~Ge~V 135 (159)
T PRK13692 95 KPIVAGDKLYCDVYVDSVREAH-GTQIIVTKNIVTNEEGDVV 135 (159)
T ss_pred CCccCCCEEEEEEEEEEEEEcC-CceEEEEEEEEEcCCCCEE
Confidence 4789996 44444431 1 111 1256778888889988875
No 110
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=37.96 E-value=80 Score=18.05 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=16.6
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCC
Q 032014 104 HAETLPGYTPPGVYTLKMKMIGKNG 128 (149)
Q Consensus 104 ~~~~ip~~~P~g~y~v~~~l~d~~~ 128 (149)
++-........|.|+++++..|.+|
T Consensus 25 isGtp~~~~~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 25 ISGTPTSSVQPGTYTFTVTATDGSG 49 (49)
T ss_pred EEeecCCCccccEEEEEEEEEcCCC
Confidence 3334444445588999999888654
No 111
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=37.28 E-value=2.8e+02 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEe
Q 032014 103 SHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 103 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~ 141 (149)
.+++.+... -.|+|+++++.+|.+|+...=..++|.+.
T Consensus 368 ~vtL~Ls~~-~AG~y~Lvv~~t~~dG~~~~q~~~~~~v~ 405 (478)
T PRK13211 368 SVSLDLSKL-KAGHHMLVVKAKPKDGELIKQQTLDFMLE 405 (478)
T ss_pred eEEEecccC-CCceEEEEEEEEeCCCceeeeeeEEEEEE
Confidence 344444444 47999999999998888776667777774
No 112
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=36.40 E-value=1.1e+02 Score=20.90 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=19.1
Q ss_pred CCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCC-CCEE
Q 032014 93 CPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKN-GYQL 131 (149)
Q Consensus 93 CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~-~~~i 131 (149)
=|+.+|+ ++.+..+ -.. -.+..+++++..+++ |+.+
T Consensus 79 ~PV~~gdtl~~~~~v--~~~-~~~~~~~~~~~~nq~~g~~V 116 (126)
T cd03447 79 GMVLPNDELEVRLEH--VGM-VDGRKVIKVEARNEETGELV 116 (126)
T ss_pred ccCcCCCEEEEEEEE--EEE-eCCeEEEEEEEEECCCCCEE
Confidence 4677775 4433332 111 124556677777777 5643
No 113
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=36.24 E-value=1.5e+02 Score=21.46 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=23.6
Q ss_pred CCCCCCc-EEEEEEE-EeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 93 CPIEAGN-FVLSHAE-TLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 93 CPl~~G~-~~~~~~~-~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
=|+.+|+ .+.+..+ .+....-.+-.+.+.++.||+|+.+
T Consensus 95 rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V 135 (166)
T PRK13691 95 KPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELV 135 (166)
T ss_pred CCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEE
Confidence 4788896 4444432 2222112256788888889988874
No 114
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=35.81 E-value=1.8e+02 Score=21.44 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=47.8
Q ss_pred ccceeecCCCCC---CcEEEeEEEEecC--------CCCCCCcEEEEEEEEEeeEecCc----EE--EEEEEEceEEEcc
Q 032014 20 AIDFTYCDDEEN---FPLKVQQIKIIPD--------PVVTGKPAIFNISAVTDRSVSGG----KV--MIEVRYFGIRVHS 82 (149)
Q Consensus 20 ~~~~~~C~~~~~---~~~~i~~v~i~P~--------p~~~G~~~~i~~~~~~~~~i~~~----~~--~v~~~~~~~~~~~ 82 (149)
+..++.-.-+.+ -..+|..|.+.|- ++..-.++.++++..+.+.-..| .+ .+.+.|--.. .
T Consensus 24 ~a~~~E~Pigep~evg~meiaaVYlQpveMeP~G~~~~a~~aDiHlEADIha~~~n~nGfg~Gew~pYLtv~y~l~~--~ 101 (179)
T COG3470 24 AAAFKEVPIGEPIEVGGMEIAAVYLQPVEMEPRGMQLPAAEADIHLEADIHALKGNKNGFGEGEWVPYLTVNYELVN--T 101 (179)
T ss_pred ccccccccCCCCcccCCeEEEEEEeeeeecccccCCCChhhccceeeeehhccccCCCCcCcccccceEEEEEEEEe--c
Confidence 445555432222 2456777766663 23344456666666655554333 22 2222211110 1
Q ss_pred CCcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeC
Q 032014 83 ETHDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGK 126 (149)
Q Consensus 83 ~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~ 126 (149)
.+.+.=+++-=|+.+++ =.|-.++.+ ..+.|+|.+++.+...
T Consensus 102 d~g~~q~gtfmPMvA~DGpHYG~Nik~--e~gvG~YKl~~~Is~P 144 (179)
T COG3470 102 DTGKVQKGTFMPMVADDGPHYGANIKM--EMGVGNYKLTFEISAP 144 (179)
T ss_pred CCcceeeeeeeeeecCCCCcccceeee--ccCCccEEEEEEecCC
Confidence 12222223445666553 233333322 2567888888877643
No 115
>PRK10449 heat-inducible protein; Provisional
Probab=34.62 E-value=53 Score=23.17 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=9.2
Q ss_pred CcceehhhhHHhhhhh
Q 032014 1 MNRQLLLLFTFYVLVS 16 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~ 16 (149)
||+++.++++..++.+
T Consensus 1 mk~~~~~~~~~~~l~~ 16 (140)
T PRK10449 1 MKKVVALVALSLLMAG 16 (140)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 8977655544444443
No 116
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=34.20 E-value=1.2e+02 Score=21.66 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=39.2
Q ss_pred ceeecCCCC----CCcEEEeEEEEec--CCCCCCCcEEEEEEEEEeeEecCcEEEEEE-EEceE-EEccCCcCCCCc-cC
Q 032014 22 DFTYCDDEE----NFPLKVQQIKIIP--DPVVTGKPAIFNISAVTDRSVSGGKVMIEV-RYFGI-RVHSETHDICEE-VS 92 (149)
Q Consensus 22 ~~~~C~~~~----~~~~~i~~v~i~P--~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~-~~~~~-~~~~~~~d~C~~-~~ 92 (149)
-+..|.+.- .+++++ +..| ..+++|+++.|+.+..-..+.......+.. ...|- .+-..+.-.... -.
T Consensus 17 ~l~sC~deLDIQQ~YpF~v---~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~ 93 (137)
T PF12988_consen 17 LLSSCDDELDIQQAYPFTV---ETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDR 93 (137)
T ss_dssp ------TTS------SEEE---EE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSE
T ss_pred HHhhcCCccceeecCCcEE---EEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccc
Confidence 456786641 245544 4454 357889999999887766555444333321 11110 110111111110 12
Q ss_pred CCCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 032014 93 CPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 93 CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 130 (149)
=|++.+.|++-++-. -..+=++.+.+.|.-|+.
T Consensus 94 Y~L~~~~FRLYYTS~-----s~~~q~idv~veDnfGq~ 126 (137)
T PF12988_consen 94 YPLEKEVFRLYYTSR-----SDDQQTIDVYVEDNFGQE 126 (137)
T ss_dssp EE-S-SEEEEEEEE------SSS-EEEEEEEEETTTEE
T ss_pred eecCcCEEEEEEecC-----CCCCceeEEEEEeCCCCE
Confidence 356667776555432 134556777888876764
No 117
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=33.33 E-value=70 Score=24.62 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.2
Q ss_pred CCCCcEEEEEE
Q 032014 95 IEAGNFVLSHA 105 (149)
Q Consensus 95 l~~G~~~~~~~ 105 (149)
+.+|.|+++..
T Consensus 167 lp~G~Yt~~V~ 177 (225)
T PRK06655 167 LPDGNYTIKAS 177 (225)
T ss_pred CCCeeEEEEEE
Confidence 44455444443
No 118
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.02 E-value=28 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=18.2
Q ss_pred cCCcCCCCccCCCCCCC-c-EEEEEE
Q 032014 82 SETHDICEEVSCPIEAG-N-FVLSHA 105 (149)
Q Consensus 82 ~~~~d~C~~~~CPl~~G-~-~~~~~~ 105 (149)
.--.|.|...+||+-.| . |.|.-.
T Consensus 77 GTise~Cte~sCP~MsGG~rYEY~Wq 102 (217)
T KOG1903|consen 77 GTISEFCTETSCPVMSGGPRYEYRWQ 102 (217)
T ss_pred hhHhhhccccCCCcccCCCcceeEec
Confidence 34568999999999888 4 777554
No 119
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=32.47 E-value=66 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=16.3
Q ss_pred CCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 110 GYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 110 ~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
..+|.|.+ ++.|.+..+..+-+...+.+-
T Consensus 149 GLAPgG~V--~vWL~~~~~~~i~v~~~qa~~ 177 (216)
T PF11153_consen 149 GLAPGGKV--KVWLMGGCGPNIEVTRLQAKE 177 (216)
T ss_pred EEcCCCEE--EEEEcCCCCCcEEEecCcCEE
Confidence 34677754 455555456666666555443
No 120
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=31.77 E-value=29 Score=21.18 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=15.1
Q ss_pred CcceehhhhHHhhhhh--cccccceee
Q 032014 1 MNRQLLLLFTFYVLVS--SIQAIDFTY 25 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~--~~~~~~~~~ 25 (149)
|-+.+.++.++|+++. +..+..|..
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~ 27 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAP 27 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCC
Confidence 6666777777886665 334444543
No 121
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=31.72 E-value=1.1e+02 Score=19.20 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=15.8
Q ss_pred CCCcEEEEEEEE--eCCCCCCeEEEEEEEEEe
Q 032014 96 EAGNFVLSHAET--LPGYTPPGVYTLKMKMIG 125 (149)
Q Consensus 96 ~~G~~~~~~~~~--ip~~~P~g~y~v~~~l~d 125 (149)
.+|.+.|.-.-. =-...|+|.|+++++..|
T Consensus 48 ~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~~ 79 (81)
T PF13860_consen 48 SAGEHSFTWDGKDDDGNPVPDGTYTFRVTATD 79 (81)
T ss_dssp SSEEEEEEE-SB-TTS-B--SEEEEEEEEEEE
T ss_pred CCceEEEEECCCCCCcCCCCCCCEEEEEEEEe
Confidence 556544333322 223478899999888876
No 122
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=31.63 E-value=1.3e+02 Score=18.71 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=5.7
Q ss_pred EEEEEEEEceE
Q 032014 68 KVMIEVRYFGI 78 (149)
Q Consensus 68 ~~~v~~~~~~~ 78 (149)
.+.+...+.++
T Consensus 14 ~V~v~G~F~~W 24 (79)
T cd02859 14 EVYVTGSFDNW 24 (79)
T ss_pred EEEEEEEcCCC
Confidence 35555555554
No 123
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=31.58 E-value=1.3e+02 Score=18.41 Aligned_cols=41 Identities=24% Similarity=0.611 Sum_probs=26.9
Q ss_pred CCCCCcEE-EEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 032014 94 PIEAGNFV-LSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF 138 (149)
Q Consensus 94 Pl~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~ 138 (149)
++..|.|. |+.....| ...|..+|++ .|++|+.+.=..|.+
T Consensus 24 ~i~g~r~Rt~S~k~~~~--~~~G~WrV~V--~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 24 PISGGRWRTWSSKQNFP--DQPGDWRVEV--VDEDGQVLGSLRFSV 65 (66)
T ss_pred eccCCCEEEEEEeecCC--CCCcCEEEEE--EcCCCCEEEEEEEEE
Confidence 34534453 55555555 5678888776 588899987777664
No 124
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=31.51 E-value=57 Score=19.84 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=13.4
Q ss_pred CeEEEEEEEEEeCCC
Q 032014 114 PGVYTLKMKMIGKNG 128 (149)
Q Consensus 114 ~g~y~v~~~l~d~~~ 128 (149)
+|.|++++...|.+|
T Consensus 54 ~G~y~v~l~v~n~~g 68 (79)
T smart00089 54 PGTYTVTLTVTNAVG 68 (79)
T ss_pred CcEEEEEEEEEcCCC
Confidence 599999999998777
No 125
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=30.53 E-value=30 Score=25.53 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=11.6
Q ss_pred CCCCCCcEEEEEEEEE
Q 032014 45 PVVTGKPAIFNISAVT 60 (149)
Q Consensus 45 p~~~G~~~~i~~~~~~ 60 (149)
.++.|+.++++..+.+
T Consensus 85 ~p~~gd~V~v~Y~~~~ 100 (177)
T TIGR03516 85 TPEFGDLVTFEYDIRA 100 (177)
T ss_pred cCCCCCEEEEEEEEEe
Confidence 3577888888877754
No 126
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=30.44 E-value=2e+02 Score=20.36 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=27.8
Q ss_pred CcEEEEEEEEeCCCC--CCeEEEEEEEEEeCCCCEEEEEEEEEEEeccc
Q 032014 98 GNFVLSHAETLPGYT--PPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGA 144 (149)
Q Consensus 98 G~~~~~~~~~ip~~~--P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~ 144 (149)
|.|+|++..+|--.. =.....+.+..+|.||.... ..+.+.|.-+.
T Consensus 66 GsYtftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s~-~~l~VtI~DD~ 113 (137)
T TIGR03660 66 GSYEFTLEGPLDHAAGSDELTLNFPIIATDFDGDTSS-ITLPVTIVDDV 113 (137)
T ss_pred ccEEEEEcccccCCCCCceEEEeeeEEEEeCCCCccc-cEEEEEEECCC
Confidence 667777776663311 12345556677788887654 47777776543
No 127
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.40 E-value=1.3e+02 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=16.4
Q ss_pred CCCCCCCc-EEEEEE-EEeCCCCCCeEEEEEEEEEe
Q 032014 92 SCPIEAGN-FVLSHA-ETLPGYTPPGVYTLKMKMIG 125 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~-~~ip~~~P~g~y~v~~~l~d 125 (149)
.=|+.||+ ++..++ +.=|.. .|.|...++..-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~--~G~Y~f~v~a~p 129 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRS--GGTYQFNVTAFP 129 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCC--CCeEEEEEEEEC
Confidence 45777775 444442 222222 366666666653
No 128
>PF13115 YtkA: YtkA-like
Probab=29.77 E-value=1.3e+02 Score=18.72 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=18.7
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 032014 102 LSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
|++++..|.....|.-+++++ .|++|+.+.=..+.+.+
T Consensus 7 ~~v~l~~~~~~~~g~~~i~v~-~~~~g~pv~~a~V~~~~ 44 (86)
T PF13115_consen 7 YTVELVSPEPPKVGENTITVT-VDQGGKPVTDADVQFEI 44 (86)
T ss_pred EEEEEecCCCCcCCceEEEEE-ECCCCCCCCCCEEEEEE
Confidence 444445554334444456666 56666655333344433
No 129
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=29.67 E-value=20 Score=20.90 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=6.8
Q ss_pred CcceehhhhHHh
Q 032014 1 MNRQLLLLFTFY 12 (149)
Q Consensus 1 m~~~~~l~~~~~ 12 (149)
|||.+.+++++.
T Consensus 2 mKk~i~~i~~~l 13 (48)
T PRK10081 2 VKKTIAAIFSVL 13 (48)
T ss_pred hHHHHHHHHHHH
Confidence 777666644333
No 130
>PRK15287 putative minor fimbrial subunit StfF; Provisional
Probab=28.37 E-value=1.1e+02 Score=21.93 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=15.1
Q ss_pred cEEEeEEEEe-c-CCCCCCCcEEEEEE
Q 032014 33 PLKVQQIKII-P-DPVVTGKPAIFNIS 57 (149)
Q Consensus 33 ~~~i~~v~i~-P-~p~~~G~~~~i~~~ 57 (149)
.+++++--+. | |.+..|+++.+++.
T Consensus 21 ~i~f~G~Iv~~p~C~i~~~~~i~V~fG 47 (158)
T PRK15287 21 NLKFHGTLISPPNCTINNDQTIDVKFG 47 (158)
T ss_pred eEEEEEEEEcCCCCEEcCCccEEEEcc
Confidence 4566665554 4 77766666666653
No 131
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=28.18 E-value=2.2e+02 Score=20.03 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=12.5
Q ss_pred cCCCCCCCcEEEEEEEE
Q 032014 91 VSCPIEAGNFVLSHAET 107 (149)
Q Consensus 91 ~~CPl~~G~~~~~~~~~ 107 (149)
..+|+.+|+|.+.+...
T Consensus 90 ~~~~ip~G~Y~Lv~~~i 106 (125)
T PF11033_consen 90 LSFDIPKGDYQLVFQTI 106 (125)
T ss_pred EEEecCCCcEEEEEEEe
Confidence 57899999877765543
No 132
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=28.07 E-value=28 Score=20.65 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=13.1
Q ss_pred CcceehhhhHHhhhhhcccccceeecCC
Q 032014 1 MNRQLLLLFTFYVLVSSIQAIDFTYCDD 28 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~ 28 (149)
|||..+|..++++ ...+++-+.....+
T Consensus 1 MRTL~LLaAlLLl-AlqaQAepl~~~~d 27 (52)
T PF00879_consen 1 MRTLALLAALLLL-ALQAQAEPLQERAD 27 (52)
T ss_pred CcHHHHHHHHHHH-HHHHhccccccccc
Confidence 8866555443333 33344444444443
No 133
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=27.96 E-value=2.8e+02 Score=24.46 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCCCcEEEEEEEEEe--eEecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEE
Q 032014 47 VTGKPAIFNISAVTD--RSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKM 123 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~--~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l 123 (149)
.+|+.+++++++... ++. ++++.++++..+-.+......+ . +.+|+ .+.+.+..+|..-= .-|-+++..
T Consensus 8 ~PGe~V~l~~~~~~~~~~~~-~g~~~v~~~~l~~~V~~~~~~~--~----~~~~~~~~~~~~w~~P~~df-~GYlv~i~~ 79 (559)
T PF13199_consen 8 RPGEKVTLTASLKNTTGSDF-SGTVKVRYYHLNEVVGETKQSV--D----LTSGASWTLTIEWTAPADDF-TGYLVEIYA 79 (559)
T ss_dssp -TTS-EEEE-EEE--SSS-E-EEEEEEEEEETTEEEEEEEEEE--E----E-TT-EEE-TTSEEE-TTSS-EEEEEEEEE
T ss_pred CCCCeEEEEEEeccCccccc-cceEEEEEEEcCeEeeeeeeEE--e----ecCCCcceeeEEEECCcccC-eeEEEEEEE
Confidence 369999999887754 332 3678888877665443321100 1 23454 45555567776432 448899988
Q ss_pred EeCCCCEEEEEEEEEEEe
Q 032014 124 IGKNGYQLTCFSFKFKIG 141 (149)
Q Consensus 124 ~d~~~~~i~C~~~~~~i~ 141 (149)
|++|+.+.=....+++.
T Consensus 80 -~~~g~~~~~~t~aiDVS 96 (559)
T PF13199_consen 80 -DSGGKEVDSATIAIDVS 96 (559)
T ss_dssp --TT--EEEEEEEEEEE-
T ss_pred -ecCCceeeeeeEEEEec
Confidence 88888876666666654
No 134
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=27.57 E-value=1.1e+02 Score=20.30 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCCc-EEEEEEEEeCCCCCC---eEEEEEEEEEeCCCC
Q 032014 95 IEAGN-FVLSHAETLPGYTPP---GVYTLKMKMIGKNGY 129 (149)
Q Consensus 95 l~~G~-~~~~~~~~ip~~~P~---g~y~v~~~l~d~~~~ 129 (149)
+.||+ -++++++.+|..+.. .-|..-+.+.+.+++
T Consensus 66 V~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~~ 104 (112)
T PF06280_consen 66 VPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDGE 104 (112)
T ss_dssp E-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTTS
T ss_pred ECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCCC
Confidence 68896 889999999875443 556788888877776
No 135
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=27.36 E-value=1e+02 Score=17.05 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=10.9
Q ss_pred CCeEEEEEEEEE--eCCCC
Q 032014 113 PPGVYTLKMKMI--GKNGY 129 (149)
Q Consensus 113 P~g~y~v~~~l~--d~~~~ 129 (149)
-+|.|+++++.. +.+|+
T Consensus 11 ~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDGK 29 (41)
T ss_pred CCeEEEEEEEEEEEeCCCc
Confidence 358888777764 44555
No 136
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.94 E-value=1e+02 Score=23.53 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=5.8
Q ss_pred CCCeEEEEEEE
Q 032014 112 TPPGVYTLKMK 122 (149)
Q Consensus 112 ~P~g~y~v~~~ 122 (149)
.|+|.|++++.
T Consensus 160 lp~G~Y~~~V~ 170 (218)
T PRK09619 160 LQPGQYQLSVV 170 (218)
T ss_pred CCCceeEEEEE
Confidence 45555555554
No 137
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=26.79 E-value=77 Score=21.37 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=17.4
Q ss_pred CCCCCc-EEEEEEE--EeCCCC-CCeE-EEEEEEEEeCCCCEE
Q 032014 94 PIEAGN-FVLSHAE--TLPGYT-PPGV-YTLKMKMIGKNGYQL 131 (149)
Q Consensus 94 Pl~~G~-~~~~~~~--~ip~~~-P~g~-y~v~~~l~d~~~~~i 131 (149)
|+.+|+ .+.+..+ .-.+.- -.+. ..++.+.+|++|+.+
T Consensus 87 Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v 129 (132)
T PF13452_consen 87 PLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELV 129 (132)
T ss_dssp --BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEE
T ss_pred CCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEE
Confidence 778886 4433332 112211 1222 355677788888765
No 138
>PRK13792 lysozyme inhibitor; Provisional
Probab=26.48 E-value=1.1e+02 Score=21.52 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=5.2
Q ss_pred CCEEEEEE
Q 032014 128 GYQLTCFS 135 (149)
Q Consensus 128 ~~~i~C~~ 135 (149)
++.+.|.+
T Consensus 119 ~~~~~c~~ 126 (127)
T PRK13792 119 TDGVACKE 126 (127)
T ss_pred CCCeeeec
Confidence 55677864
No 139
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=26.36 E-value=51 Score=21.60 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=14.0
Q ss_pred CcEEEeEEEEecCC--CCCCCcEEEEEE
Q 032014 32 FPLKVQQIKIIPDP--VVTGKPAIFNIS 57 (149)
Q Consensus 32 ~~~~i~~v~i~P~p--~~~G~~~~i~~~ 57 (149)
..+++++-..+|.. +++|+++++++.
T Consensus 23 v~I~~~~~~f~P~~i~v~~G~~v~l~~~ 50 (104)
T PF13473_consen 23 VTITVTDFGFSPSTITVKAGQPVTLTFT 50 (104)
T ss_dssp -------EEEES-EEEEETTCEEEEEEE
T ss_pred ccccccCCeEecCEEEEcCCCeEEEEEE
Confidence 36677788888874 578998887765
No 140
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.24 E-value=33 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=7.4
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
||+++.|++++.+
T Consensus 3 ~~~~~~ll~~v~~ 15 (91)
T TIGR01165 3 MKKTIWLLAAVAA 15 (91)
T ss_pred cchhHHHHHHHHH
Confidence 6766655554443
No 141
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=25.80 E-value=33 Score=22.02 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=8.9
Q ss_pred CcceehhhhHHhhhh
Q 032014 1 MNRQLLLLFTFYVLV 15 (149)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (149)
||+++.+++++..+.
T Consensus 1 MKK~~~~~~~i~~l~ 15 (80)
T PF11106_consen 1 MKKIIYGLFAILALA 15 (80)
T ss_pred ChhHHHHHHHHHHHH
Confidence 897766555444433
No 142
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=25.79 E-value=88 Score=22.11 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred CCCeEEE-EEEEEEeCCCCEEEEEEEE
Q 032014 112 TPPGVYT-LKMKMIGKNGYQLTCFSFK 137 (149)
Q Consensus 112 ~P~g~y~-v~~~l~d~~~~~i~C~~~~ 137 (149)
+|.|.|. +++.+=+..|+.-=|+.||
T Consensus 93 ~PaG~YeAlrI~IG~g~G~NWWCVLfP 119 (130)
T PF09551_consen 93 LPAGEYEALRITIGEGKGHNWWCVLFP 119 (130)
T ss_pred ccCCceEEEEEEecCccCcceEEEecC
Confidence 6999995 4666666678999999886
No 143
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=25.74 E-value=37 Score=29.22 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.6
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
|||.|||++|.-|
T Consensus 1 mktsill~~lwgl 13 (514)
T PF07263_consen 1 MKTSILLMFLWGL 13 (514)
T ss_pred CcceeHHHHHHHh
Confidence 9999888665443
No 144
>PF02521 HP_OMP_2: Putative outer membrane protein; InterPro: IPR003678 Helicobacter pylori is a causative agent of gastritis and peptic ulceration in humans. As the first step towards development of a vaccine against H. pylori infection, many attempts have been made to identify protective antigens. Potential targets for vaccine development are H. pylori-specific proteins that are surface-exposed and highly antigenic. This family consists of putative outer membrane proteins from H. pylori.
Probab=25.48 E-value=1.8e+02 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=18.4
Q ss_pred CcceehhhhHHhhhhhcccccceeecCC
Q 032014 1 MNRQLLLLFTFYVLVSSIQAIDFTYCDD 28 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~ 28 (149)
||.+..++++++++...+++.+++-=|.
T Consensus 1 mk~~~~~~~~l~~~~~~l~Afdyk~sG~ 28 (458)
T PF02521_consen 1 MKKLKFFLLFLLFLSSSLQAFDYKLSGK 28 (458)
T ss_pred CcchHHHHHHHHHHhhhhheEEEEEEEE
Confidence 8855555555555556778888876654
No 145
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=25.14 E-value=1.2e+02 Score=21.75 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=6.3
Q ss_pred CcceehhhhHHh
Q 032014 1 MNRQLLLLFTFY 12 (149)
Q Consensus 1 m~~~~~l~~~~~ 12 (149)
||+.++.++++.
T Consensus 1 Mkk~~~~~~~~~ 12 (174)
T PRK15209 1 MKKVVFALSALA 12 (174)
T ss_pred CchHHHHHHHHH
Confidence 886544443333
No 146
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.72 E-value=31 Score=19.63 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=4.6
Q ss_pred Ccceehhhh
Q 032014 1 MNRQLLLLF 9 (149)
Q Consensus 1 m~~~~~l~~ 9 (149)
||+.+++++
T Consensus 2 mk~t~l~i~ 10 (44)
T COG5510 2 MKKTILLIA 10 (44)
T ss_pred chHHHHHHH
Confidence 776444433
No 147
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=24.42 E-value=1.4e+02 Score=16.55 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCC
Q 032014 104 HAETLPGYTPPGVYTLKMKMIGKNG 128 (149)
Q Consensus 104 ~~~~ip~~~P~g~y~v~~~l~d~~~ 128 (149)
..+.+....|...|.++++..+..|
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEEEcccC
Confidence 3455666667779999999887544
No 148
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=23.87 E-value=85 Score=21.37 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.3
Q ss_pred CcceehhhhHHhh
Q 032014 1 MNRQLLLLFTFYV 13 (149)
Q Consensus 1 m~~~~~l~~~~~l 13 (149)
||..++.++++++
T Consensus 1 mKK~li~li~~iv 13 (114)
T TIGR01655 1 MKKGLAILLALIV 13 (114)
T ss_pred CceehHHHHHHHH
Confidence 8866555544443
No 149
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=23.47 E-value=82 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.440 Sum_probs=17.1
Q ss_pred CcceehhhhHHhhhhhcccccceeecCCC
Q 032014 1 MNRQLLLLFTFYVLVSSIQAIDFTYCDDE 29 (149)
Q Consensus 1 m~~~~~l~~~~~l~~~~~~~~~~~~C~~~ 29 (149)
|| ...|++.+||++.++. ...+-|..-
T Consensus 1 mk-~~flfifvclfifsan-aelkf~pef 27 (159)
T PF14673_consen 1 MK-NCFLFIFVCLFIFSAN-AELKFCPEF 27 (159)
T ss_pred Cc-eEEeehhhhhhhhcCC-ceeecCccc
Confidence 78 4456666777665443 467888754
No 150
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=23.43 E-value=1.7e+02 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCCCcEEEEEEEE-eCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 95 IEAGNFVLSHAET-LPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 95 l~~G~~~~~~~~~-ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
+++|.-+.+.++. .....|...|++++.+. +|+.+
T Consensus 242 L~~G~N~i~i~f~~~~~l~~g~~Y~i~l~l~--ng~~v 277 (285)
T PF06157_consen 242 LNPGNNNITINFGSPLNLVPGNTYTITLTLS--NGQTV 277 (285)
T ss_pred eeccccEEEEEcCCcccCCCCCEEEEEEEEc--CCcEE
Confidence 7899766666666 34456888899999996 46553
No 151
>PF03627 PapG_N: PapG carbohydrate binding domain; InterPro: IPR005310 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus (this domain) and chaperone binding C terminus. The carbohydrate-binding domain interacts with the receptor glycan [, ].; GO: 0030246 carbohydrate binding, 0007155 cell adhesion; PDB: 2WMP_B 3ME0_B 1J8S_A 1J8R_A.
Probab=23.39 E-value=1.6e+02 Score=22.31 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=15.2
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEE
Q 032014 102 LSHAETLPGYTPPGVYTLKMKMI 124 (149)
Q Consensus 102 ~~~~~~ip~~~P~g~y~v~~~l~ 124 (149)
+.+...+|..+|.|+|++.+...
T Consensus 154 l~f~~~LP~DLPkG~Y~~pi~yi 176 (226)
T PF03627_consen 154 LIFRVFLPVDLPKGDYSFPIKYI 176 (226)
T ss_dssp EEEEEE--TT--SEEEEEEEEEE
T ss_pred EEEEEEccccCCCCceeeechhh
Confidence 45667899999999999987754
No 152
>PF11771 DUF3314: Protein of unknown function (DUF3314) ; InterPro: IPR021748 This small family contains human, mouse and fish members but the function is not known.
Probab=23.23 E-value=2.6e+02 Score=20.32 Aligned_cols=82 Identities=16% Similarity=0.284 Sum_probs=47.6
Q ss_pred cccceeecCCCCCCcE-EE--------eEEEEecCCCCCCCc---EEEEEEEEEeeEecC--------c---EEEE-EE-
Q 032014 19 QAIDFTYCDDEENFPL-KV--------QQIKIIPDPVVTGKP---AIFNISAVTDRSVSG--------G---KVMI-EV- 73 (149)
Q Consensus 19 ~~~~~~~C~~~~~~~~-~i--------~~v~i~P~p~~~G~~---~~i~~~~~~~~~i~~--------~---~~~v-~~- 73 (149)
....|++|...+ +.. .. =+++..|.+-.+|+. -..+.-|---+++.. . ..++ ++
T Consensus 32 ~vsiFRYC~pap-YtA~~~p~LYKkMRWNve~~~~~~g~gq~~~~~~~eyYFLCy~Dt~~~a~~~~~~~a~s~~~~~rlW 110 (164)
T PF11771_consen 32 EVSIFRYCKPAP-YTASRFPRLYKKMRWNVERTPEPSGDGQDWDSSHTEYYFLCYRDTWEPADDTGQSPANSCPQIQRLW 110 (164)
T ss_pred EEEEEEecCCcc-cccccCcchhhheeeeeecCCCcccCCcccccccceEEEEEEccccccccccccCCcccCcceeEEE
Confidence 345699997632 111 11 278888888888888 556666654443322 1 1111 11
Q ss_pred EEceE-EEcc--CCcCCCCccCCCCCCCcEE
Q 032014 74 RYFGI-RVHS--ETHDICEEVSCPIEAGNFV 101 (149)
Q Consensus 74 ~~~~~-~~~~--~~~d~C~~~~CPl~~G~~~ 101 (149)
.+|.+ ++-. ...|+=+.+-||..+|+|.
T Consensus 111 SIGrWv~~~Pd~~~dDl~sWiLC~~P~gdyq 141 (164)
T PF11771_consen 111 SIGRWVQLGPDPATDDLYSWILCPQPPGDYQ 141 (164)
T ss_pred EecceEEcCCCcCcccceeEEEcCCCccchh
Confidence 24554 5533 3557777788999999853
No 153
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=23.01 E-value=3.3e+02 Score=23.83 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=39.1
Q ss_pred CCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccCCCCCCCcEEEEEEEEeCCCCCCeEEEEEEEEE
Q 032014 47 VTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMI 124 (149)
Q Consensus 47 ~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~ 124 (149)
.+++.+.+++.+.-+..+......+.+.++|..+-+...+. ..|.-.-++++.||...-.|..++++++.
T Consensus 339 ~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~--------~~~~~~~~~~v~iP~~~~~~~N~l~~~f~ 408 (605)
T PF03170_consen 339 WDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTP--------ADGAGFDRYTVSIPRLLLPGRNQLQFEFD 408 (605)
T ss_pred cCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCC--------CCCCccceeEEecCchhcCCCcEEEEEEE
Confidence 56777888877776655545555666667775443332222 22223345556666555556556655554
No 154
>TIGR00809 secB protein-export chaperone SecB. The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise.
Probab=22.91 E-value=1.4e+02 Score=21.40 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=24.1
Q ss_pred EEEEEEEEEeeEecCcE-EEEEEEEceE-EE---ccCCcCCCCccCCC
Q 032014 52 AIFNISAVTDRSVSGGK-VMIEVRYFGI-RV---HSETHDICEEVSCP 94 (149)
Q Consensus 52 ~~i~~~~~~~~~i~~~~-~~v~~~~~~~-~~---~~~~~d~C~~~~CP 94 (149)
..+.++.++....+..+ ..+++.++|+ .+ +....+.+-...||
T Consensus 52 ~EV~L~~~vtak~~~~~~Fl~Ev~~aGIF~i~~~~~e~l~~~L~i~cP 99 (140)
T TIGR00809 52 YEVVLNITVTARLEEYTAFLCEVKQAGVFNIIGIESEQMAHCLGVHCP 99 (140)
T ss_pred EEEEEEEEEEEecCCccEEEEEEEEEEEEEecCCCHHHHHHHHhcCCc
Confidence 55555555554554444 5788889885 43 33333444445776
No 155
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=2.5e+02 Score=21.13 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCCCCCcEEEEEEEEeCCC--CCCeEE--EEEEEEEeCCCCEEEEEEEEEEE
Q 032014 92 SCPIEAGNFVLSHAETLPGY--TPPGVY--TLKMKMIGKNGYQLTCFSFKFKI 140 (149)
Q Consensus 92 ~CPl~~G~~~~~~~~~ip~~--~P~g~y--~v~~~l~d~~~~~i~C~~~~~~i 140 (149)
+=|..+|.-.|+.++.|-.+ -|.|+. .++|++.+++|+.+.=-.|.+++
T Consensus 105 ~~p~~s~q~~~~l~vtv~rF~gry~g~a~i~g~W~L~~~~G~~~~~r~F~~e~ 157 (190)
T COG3009 105 PAPASSGQDLYKLNVTVQRFDGRYTGKAVISGEWRLLHDKGQPLINRPFHLEL 157 (190)
T ss_pred cccCCCCcceEEEEEEEeeecCcccCceEEEEEEEEeccccCccccCceeeee
Confidence 56788884356666666654 455554 55899998788765444555544
No 156
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=22.82 E-value=1.2e+02 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.8
Q ss_pred CcceehhhhHHhhhh
Q 032014 1 MNRQLLLLFTFYVLV 15 (149)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (149)
||+.++.++.+.++.
T Consensus 1 m~~~~~~~~~~~~~~ 15 (171)
T PRK09934 1 MRRVFFACFCGLLWS 15 (171)
T ss_pred ChhHHHHHHHHHhhC
Confidence 886655444333333
No 157
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.45 E-value=2.1e+02 Score=22.85 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=27.0
Q ss_pred CCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCC
Q 032014 92 SCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGY 129 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~ 129 (149)
.=|+.||. -..-....-|..-+.+.|+ ++++|+||.
T Consensus 243 ~~~i~PG~~grVvVe~e~~~~~~~~~ft--Lel~~~dG~ 279 (289)
T PF09544_consen 243 EGPIAPGGSGRVVVEAEAPAFSAGGPFT--LELWDADGL 279 (289)
T ss_pred cCccCCCCceeEEEEecCCCcCCCCcEE--EEEEcCCCc
Confidence 46889996 5566677778888888888 556787884
No 158
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=22.06 E-value=1.8e+02 Score=24.38 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=50.2
Q ss_pred EEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcE--EEEEEEEceEEEcc---C-C-cCCCCc--cCCCCCCCc-EEEE
Q 032014 34 LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGK--VMIEVRYFGIRVHS---E-T-HDICEE--VSCPIEAGN-FVLS 103 (149)
Q Consensus 34 ~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~--~~v~~~~~~~~~~~---~-~-~d~C~~--~~CPl~~G~-~~~~ 103 (149)
++--++.-+++.++.|++++++.+|.+-++=.... -.+..-..|.|-|- . + -+. .. -+=+++.|. |.|+
T Consensus 34 i~WYDv~wS~~~~kVNee~~iTGKfhv~~~WP~~v~~P~~sFlN~g~PGPv~vR~~t~lng-~~~~~S~~LelG~dYefk 112 (399)
T TIGR03079 34 IQWYDMKWGPDTTKVNETATITGKFHLAEDWPRAVEKPHVSFFNVGSPSPVFVRLSTKVNG-MPVFISGPLEIGRDYEFE 112 (399)
T ss_pred eEEEEeeeccceeeecceEEEEEEEEEcccCchhcCCCceEEEecCCCCCeEEEeeEEECC-EeecceeEeecCCceeEE
Confidence 45558888888899999999999988654422211 11111011111100 0 0 011 11 245688896 6655
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 032014 104 HAETLPGYTPPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 104 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i 131 (149)
..+ -.-. +|++++...+.-+++..+
T Consensus 113 v~l--kaR~-pG~~hvh~m~Nv~~~Gpi 137 (399)
T TIGR03079 113 VTL--QARI-PGRHHMHAMLNVKDAGPI 137 (399)
T ss_pred EEE--eecc-CCcccceeEEEeccCCCC
Confidence 443 3333 377888777765665443
No 159
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.03 E-value=2.2e+02 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=12.8
Q ss_pred CCCCCCCc-EEEEEEEEeCC
Q 032014 92 SCPIEAGN-FVLSHAETLPG 110 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~ip~ 110 (149)
.=|+++|. |.|++...+-.
T Consensus 33 T~~L~~G~~y~Y~v~a~~~~ 52 (75)
T TIGR03000 33 TPPLEAGKEYEYTVTAEYDR 52 (75)
T ss_pred CCCCCCCCEEEEEEEEEEec
Confidence 45788996 77776665543
No 160
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=21.84 E-value=1.3e+02 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCC
Q 032014 104 HAETLPGYTPPGVYTLKMKMIGKN 127 (149)
Q Consensus 104 ~~~~ip~~~P~g~y~v~~~l~d~~ 127 (149)
+++.|+...|.|..-.+++..|.|
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D 24 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPD 24 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESS
T ss_pred CEEEEECCCCCCCEEEEEEEEeCC
Confidence 466788888889999999999887
No 161
>PRK09733 putative fimbrial protein; Provisional
Probab=21.12 E-value=1.3e+02 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=12.0
Q ss_pred cEEEe-EEEEecCCCCCCC-cEEEEE
Q 032014 33 PLKVQ-QIKIIPDPVVTGK-PAIFNI 56 (149)
Q Consensus 33 ~~~i~-~v~i~P~p~~~G~-~~~i~~ 56 (149)
.++++ .|.-.||.+..+. +.+|++
T Consensus 27 ~i~f~G~I~~~tC~i~~~s~~~~V~l 52 (181)
T PRK09733 27 IVKFKGEVISAPCSIKPGDEDLTVNL 52 (181)
T ss_pred EEEEEEEEEecceeecCCCCceEEEC
Confidence 44555 3444577765443 344443
No 162
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=21.10 E-value=73 Score=24.02 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=20.0
Q ss_pred CCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE----EEEEEEEE
Q 032014 95 IEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ----LTCFSFKF 138 (149)
Q Consensus 95 l~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~----i~C~~~~~ 138 (149)
+++|.|++++-..--.. .-..++-++++|.+|+. ++|-.++.
T Consensus 84 ae~~mYtLsF~AkA~t~--g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~ 129 (212)
T PF15425_consen 84 AEKGMYTLSFDAKADTN--GTQVHVFIRLHNDNGKDNQRFFMRRDYDA 129 (212)
T ss_dssp --SSEEEEEEEEEESST--T-EEEEEEE-B-TTS-B---EEEETT--T
T ss_pred cccceEEEEEEeecccC--CCcEEEEEEEecCCCccceeEEEEecccc
Confidence 57787666555443322 22566666788887764 56665544
No 163
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.70 E-value=2e+02 Score=23.19 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=26.9
Q ss_pred CCCCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 032014 92 SCPIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 92 ~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 130 (149)
.=|+.||. -..-...+.|..-|.+.|+ ++++|++|..
T Consensus 249 ~~pl~Pg~~~~vvVe~e~p~~~~~~~ft--LeL~~~~G~R 286 (295)
T TIGR02268 249 EGPLLPGGFSRVLVVAEPAPTAPPGPYT--LELWDEGRKR 286 (295)
T ss_pred ccccCCCCceeEEEEecCCCCCCCCCEE--EEEEcCCCce
Confidence 56899996 3445667778778888887 5567888854
No 164
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=20.42 E-value=2e+02 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=21.5
Q ss_pred CCcEEEEEEEEeCCCC-----CCeEEEEEEEEEeCCCCEE
Q 032014 97 AGNFVLSHAETLPGYT-----PPGVYTLKMKMIGKNGYQL 131 (149)
Q Consensus 97 ~G~~~~~~~~~ip~~~-----P~g~y~v~~~l~d~~~~~i 131 (149)
.|+|++++++..|+.. -+-.+-|++.|.|++|+.+
T Consensus 2 ~~~~~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~ 41 (367)
T PF11940_consen 2 AGTYTLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKEL 41 (367)
T ss_dssp TTEEEEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-
T ss_pred CcEEEEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCc
Confidence 4679999999988652 2356778999999988875
No 165
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=20.39 E-value=2.2e+02 Score=19.83 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCE
Q 032014 100 FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 130 (149)
Q Consensus 100 ~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 130 (149)
..+++.+.++. ..|.|.+.++.+|.+|..
T Consensus 78 ~~W~~~~~~~~--~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 78 RLWEYDWPPPS--LPGEYTIMVRATDESGNV 106 (131)
T ss_dssp EEEEEEEEECS--HCCEEEEEEEEEETTS-B
T ss_pred ceeeeccCcCc--cccceEEEEEEeeccccc
Confidence 35677777765 369999999999988864
No 166
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=20.23 E-value=3.1e+02 Score=19.11 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=8.3
Q ss_pred CcceehhhhHHhhhh
Q 032014 1 MNRQLLLLFTFYVLV 15 (149)
Q Consensus 1 m~~~~~l~~~~~l~~ 15 (149)
||...++.+.+++++
T Consensus 1 Mrk~~~~~l~~~lLv 15 (123)
T COG5633 1 MRKLCLLSLALLLLV 15 (123)
T ss_pred CceehHHHHHHHHhh
Confidence 885555445555544
Done!