BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032016
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 79/107 (73%), Gaps = 25/107 (23%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------- 117
+S+GSRLE++VKKTV+ENPVVVYSKTWCSYSSEVK LFKRL V+PLV+ELDE+
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQI 60
Query: 118 ------------------GGKHIGGCTDTVKLYRKGELEPLLSEAKS 146
GGKHIGGCTDTVKLYRKGELEPLLSEA +
Sbjct: 61 QKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 25/105 (23%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG------ 118
+S+GSR+EES++KTV+EN VV+YSKTWCSY +EVK LFKRLGV+PLV+ELD++G
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQL 61
Query: 119 -------------------GKHIGGCTDTVKLYRKGELEPLLSEA 144
GKHIGGCTDTVKL RKG+LE +L+EA
Sbjct: 62 QKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 24/95 (25%)
Query: 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------------------ 117
K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+
Sbjct: 14 KELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 73
Query: 118 ------GGKHIGGCTDTVKLYRKGELEPLLSEAKS 146
GGK IGGC V+ +++ EL PLL +A +
Sbjct: 74 VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 24/95 (25%)
Query: 76 KKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------------------ 117
K+ S PVVV+SKT+C Y + VK L ++G V+ELDE+
Sbjct: 15 KELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGT 74
Query: 118 ------GGKHIGGCTDTVKLYRKGELEPLLSEAKS 146
GGK IGGC V+ +++ EL PLL +A +
Sbjct: 75 VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 31/115 (26%)
Query: 61 QAMASSYGSRLEE-------SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIE 113
Q+M S+ S LE +++T+S+N VV++SKT CSY + K LF + V V+E
Sbjct: 21 QSMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE 80
Query: 114 LD--EMG----------------------GKHIGGCTDTVKLYRKGELEPLLSEA 144
LD E G G IGG TDT +L+++G+L PL+ +
Sbjct: 81 LDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 135
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 24/95 (25%)
Query: 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD--EMG------------- 118
+++T+S+N VV++SKT CSY + K LF + V V+ELD E G
Sbjct: 27 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 86
Query: 119 ---------GKHIGGCTDTVKLYRKGELEPLLSEA 144
G IGG TDT +L+++G+L PL+ +
Sbjct: 87 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 121
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 24/95 (25%)
Query: 74 SVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD--EMG------------- 118
+++T+S+N VV++SKT CSY + K LF + V V+ELD E G
Sbjct: 19 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE 78
Query: 119 ---------GKHIGGCTDTVKLYRKGELEPLLSEA 144
G IGG TDT +L+++G+L PL+ +
Sbjct: 79 RTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 113
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 26/97 (26%)
Query: 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM--GGK---------------- 120
+ + VV++SK++C +S+ VK LF LGVE V+ELD++ G +
Sbjct: 14 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 73
Query: 121 ------HIGGCTDTVKLYRKGELEPLLSE--AKSAEN 149
H+GGC T + Y+ G L+ LL E A AEN
Sbjct: 74 IFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAEN 110
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 28/95 (29%)
Query: 75 VKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM------------- 117
VK + + V V +KT+C YS + + LF+ L V + LV+ELDEM
Sbjct: 13 VKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 72
Query: 118 -----------GGKHIGGCTDTVKLYRKGELEPLL 141
GKHIGG +D L + G+L +L
Sbjct: 73 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 28/95 (29%)
Query: 75 VKKTVSENPVVVYSKTWCSY-SSEVKLLFKRLGV---EPLVIELDEM------------- 117
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 69
Query: 118 -----------GGKHIGGCTDTVKLYRKGELEPLL 141
GKHIGG +D L + G+L +L
Sbjct: 70 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 28/95 (29%)
Query: 75 VKKTVSENPVVVYSKTWCSY-SSEVKLLFKRLGV---EPLVIELDEM------------- 117
VK + + V V +KT+C Y + + LF+ L V + LV+ELDEM
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 89
Query: 118 -----------GGKHIGGCTDTVKLYRKGELEPLL 141
GKHIGG +D L + G+L +L
Sbjct: 90 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVE----------PLVIELDEMGGK-----------HI 122
V++Y++ C Y + K L R G E L E+ E G+ H+
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 123 GGCTDTVKLYRKGELEPLLSEAK 145
GGC D L +G+L+ LL K
Sbjct: 68 GGCDDLYALEDEGKLDSLLKTGK 90
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 28/83 (33%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM----------- 117
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALY 67
Query: 118 -------------GGKHIGGCTD 127
GKHIGG D
Sbjct: 68 EINGQRTVPNIYINGKHIGGNDD 90
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG---------------- 118
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 119 --------GKHIGGCTDTVKLYRKGELEPLLSEAK 145
GK IG +K Y EL +++E+K
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG---------------- 118
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 119 --------GKHIGGCTDTVKLYRKGELEPLLSEAK 145
GK IG +K Y EL +++E+K
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG---------------- 118
++KTV V+++SKT C Y +VK + ++ IELD++
Sbjct: 11 LRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70
Query: 119 --------GKHIGGCTDTVKLYRKGELEPLLSEAK 145
GK IG +K Y EL +++E+K
Sbjct: 71 TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 28/83 (33%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM----------- 117
+ VK ++EN + V SKT+C YS + + LF++L V + LV++L++M
Sbjct: 252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALY 311
Query: 118 -------------GGKHIGGCTD 127
GKHIGG D
Sbjct: 312 EINGQRTVPNIYINGKHIGGNDD 334
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 28/83 (33%)
Query: 73 ESVKKTVSENPVVVYSKTWCSYS-SEVKLLFKRLGV---EPLVIELDEM----------- 117
+ VK ++EN + V SKT+C Y + + LF++L V + LV++L++M
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALY 75
Query: 118 -------------GGKHIGGCTD 127
GKHIGG D
Sbjct: 76 EINGQRTVPNIYINGKHIGGNDD 98
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 26/97 (26%)
Query: 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDE----------- 116
E +++ ++ENP+++Y K C +S++ G +++ +
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 85
Query: 117 ----------MGGKHIGGCTDTVKLYRKGELEPLLSE 143
+ G+ +GGC +++Y++GEL+ L+ E
Sbjct: 86 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 26/97 (26%)
Query: 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDE----------- 116
E +++ ++ENP+++Y K C +S++ G +++ +
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 65
Query: 117 ----------MGGKHIGGCTDTVKLYRKGELEPLLSE 143
+ G+ +GGC +++Y++GEL+ L+ E
Sbjct: 66 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 102
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL-----DEM---------------GGKHIG 123
+++Y++ C Y + L + GV+ I+ EM G H+G
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMVQRANGRNTFPQIFIGDYHVG 67
Query: 124 GCTDTVKLYRKGELEPLLSE 143
GC D L KG+L+ LL +
Sbjct: 68 GCDDLYALENKGKLDSLLQD 87
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 21/79 (26%)
Query: 84 VVVYSKTWCSYSSEVKLL-------FKRLGVEPLVIELDEM--------------GGKHI 122
V +Y+K C YS K L F+ L ++ + +EM +HI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 123 GGCTDTVKLYRKGELEPLL 141
GG D L +G L+PLL
Sbjct: 63 GGYDDLYALDARGGLDPLL 81
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 65 SSYGSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGV--EPLVIELDEM 117
S+ +L+++++K V+ VV++ K C +S+ V + K L V E + I +EM
Sbjct: 1 SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 118 -------------------GGKHIGGCTDTVKLYRKGELEPLLSEA 144
GG+ GGC T++ ++ GEL+ + +A
Sbjct: 61 LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 106
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 22/80 (27%)
Query: 84 VVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDE--------------------MGGKH 121
+ +Y+ + C + L KR GVE I+ D + +H
Sbjct: 18 IEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQH 77
Query: 122 IGGCTDTVKLYRKGELEPLL 141
IGGC D L G+L+PLL
Sbjct: 78 IGGCDDIYALDGAGKLDPLL 97
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 7 LTQFTSLSLNPSRSLSHIPTSNPGLVTANNYYTFSSR------TSLSVNGRRRRYGAVSV 60
+TQ ++L+ +P +++ S+ G VT +NY T+ T L + G +R V
Sbjct: 4 VTQESALTTSPGETVTLTCRSSSGAVTTSNYATWVQEKPDHLFTGL-IGGTNKRAPGVPA 62
Query: 61 QAMASSYGSRLEESVKKTVSENPVVVYSKTWCS----YSSEVKLLFKRLGVEPLVI 112
+ S G R ++ +E+ + + W S + KL KR P V
Sbjct: 63 RFSGSLIGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTKLEIKRTVAAPSVF 118
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
Query: 84 VVVYSKTWCSYSSEVKLL-------FKRLGVEPLVIELDEM--------------GGKHI 122
V +Y+K C Y K L F+ L ++ + +EM +HI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 123 GGCTDTVKLYRKGELEPLL 141
GG D L +G L+PLL
Sbjct: 63 GGYDDLYALDARGGLDPLL 81
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 27/93 (29%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE--------------- 116
+E V + VVV+ K C Y + + +L ++ ++E +
Sbjct: 3 QEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 62
Query: 117 ------------MGGKHIGGCTDTVKLYRKGEL 137
+G IGGC+D V L + GEL
Sbjct: 63 QLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 86 VYSKTWCSYSSEVKLLFKRLGVEPL----VIELDEMGGKHI--------GGC--TDTVKL 131
V+ S+++EV LL KRLGV+ + LD+ G+H G C DT+
Sbjct: 233 VFLALKISFANEVGLLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAF 292
Query: 132 YRKGE---LEPLLSEA 144
R GE LE +S+A
Sbjct: 293 IRFGESLGLEMAISKA 308
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 117 MGGKHIGGCTDTVKLYRKGELEPLLSEA 144
+ G+ GGC TV+ Y+ GEL+ + +A
Sbjct: 79 IDGEFFGGCDITVEAYKSGELQEQVEKA 106
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 117 MGGKHIGGCTDTVKLYRKGEL 137
+G + IGGCTD ++++GEL
Sbjct: 74 IGKECIGGCTDLESMHKRGEL 94
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 83 PVVVYSKTWCSYSSEVK-LLFKRLGVEP--LVIELDEMG 118
P++++SK+ CSYS K LL P +IELD+ G
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHG 53
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 27/93 (29%)
Query: 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE--------------- 116
+E V + VVV+ K C YS + + +L ++ ++E +
Sbjct: 2 QEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQ 61
Query: 117 ------------MGGKHIGGCTDTVKLYRKGEL 137
+G IGG +D V L + GEL
Sbjct: 62 QLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 120 KHIGGCTDTVKLYRKGELEPLLSEAKS 146
+ IGGC + R GEL LL EA++
Sbjct: 83 EFIGGCDVITSMARSGELADLLEEAQA 109
>pdb|2ZKR|ZZ Chain z, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 92
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 62 AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGGKH 121
+ YG+R S++K V + + ++K CS+ + K+ + +G+ H
Sbjct: 9 GIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIW------------H 56
Query: 122 IGGCTDTV 129
G C TV
Sbjct: 57 CGSCMKTV 64
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 84 VVVYSKTWCSYSSEVKLLF--KRLGVEPLVIELDE------------------MGGKHIG 123
+ +++K C + ++ K L K L E +++ D +GGKHIG
Sbjct: 172 ISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGKHIG 231
Query: 124 GCTDTVKLY 132
G D K +
Sbjct: 232 GSDDLEKYF 240
>pdb|3IZR|MM Chain m, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 92
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 62 AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107
+ YG+R S++K + + V +SK +C + + + K +G+
Sbjct: 9 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGI 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,915
Number of Sequences: 62578
Number of extensions: 144658
Number of successful extensions: 404
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 73
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)