Query 032016
Match_columns 149
No_of_seqs 179 out of 1324
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.9 3.3E-23 7.2E-28 148.7 7.9 74 75-148 1-98 (99)
2 PRK10824 glutaredoxin-4; Provi 99.9 2.3E-22 4.9E-27 149.0 9.7 78 70-147 3-106 (115)
3 KOG1752 Glutaredoxin and relat 99.9 7.8E-22 1.7E-26 143.9 9.3 78 71-148 3-104 (104)
4 PHA03050 glutaredoxin; Provisi 99.9 7.3E-22 1.6E-26 144.3 9.0 76 72-147 3-105 (108)
5 TIGR00365 monothiol glutaredox 99.8 3.3E-20 7.1E-25 132.7 8.4 70 72-141 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.8 1.5E-18 3.4E-23 121.8 6.8 64 75-138 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.8 4.6E-18 9.9E-23 136.8 9.6 79 66-144 97-201 (204)
8 COG0278 Glutaredoxin-related p 99.7 1.2E-17 2.6E-22 121.1 8.6 76 70-145 3-105 (105)
9 PRK10638 glutaredoxin 3; Provi 99.7 4.3E-17 9.3E-22 112.2 7.4 61 82-142 2-83 (83)
10 TIGR02181 GRX_bact Glutaredoxi 99.7 2.7E-16 5.9E-21 106.5 6.6 58 84-141 1-79 (79)
11 TIGR02180 GRX_euk Glutaredoxin 99.6 2.1E-15 4.5E-20 101.8 6.6 58 84-141 1-84 (84)
12 cd03418 GRX_GRXb_1_3_like Glut 99.6 8.6E-15 1.9E-19 97.5 6.7 53 83-135 1-75 (75)
13 cd03031 GRX_GRX_like Glutaredo 99.5 1.5E-14 3.2E-19 111.2 7.6 62 83-144 1-93 (147)
14 COG0695 GrxC Glutaredoxin and 99.5 2.1E-14 4.5E-19 99.5 6.9 55 83-137 2-79 (80)
15 TIGR02190 GlrX-dom Glutaredoxi 99.5 1.9E-14 4.1E-19 98.4 6.5 55 78-132 4-78 (79)
16 cd03419 GRX_GRXh_1_2_like Glut 99.5 2.2E-14 4.8E-19 96.7 6.4 58 83-140 1-82 (82)
17 cd03027 GRX_DEP Glutaredoxin ( 99.5 2.7E-14 5.8E-19 95.8 5.8 52 82-133 1-73 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.5 5.8E-14 1.3E-18 93.8 6.1 50 83-132 2-71 (72)
19 KOG0911 Glutaredoxin-related p 99.5 1.5E-13 3.3E-18 111.9 8.0 74 71-144 128-227 (227)
20 TIGR02183 GRXA Glutaredoxin, G 99.4 5.8E-13 1.3E-17 92.7 6.6 52 84-135 2-81 (86)
21 PRK12759 bifunctional gluaredo 99.4 6.2E-13 1.4E-17 116.2 7.0 63 82-146 2-93 (410)
22 PRK11200 grxA glutaredoxin 1; 99.4 1.1E-12 2.4E-17 90.4 6.3 52 83-134 2-81 (85)
23 cd02066 GRX_family Glutaredoxi 99.3 3.6E-12 7.7E-17 82.1 6.0 50 83-132 1-71 (72)
24 PRK10329 glutaredoxin-like pro 99.1 2.7E-10 5.8E-15 79.0 5.3 35 83-117 2-36 (81)
25 TIGR02194 GlrX_NrdH Glutaredox 99.0 3.1E-10 6.8E-15 75.9 4.6 34 84-117 1-34 (72)
26 PF00462 Glutaredoxin: Glutare 98.9 8.1E-10 1.8E-14 71.3 3.2 34 84-117 1-34 (60)
27 cd03030 GRX_SH3BGR Glutaredoxi 98.9 5E-09 1.1E-13 74.7 5.6 59 84-142 2-91 (92)
28 TIGR02196 GlrX_YruB Glutaredox 98.6 5.7E-08 1.2E-12 62.7 5.0 35 83-117 1-35 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 98.6 8.8E-08 1.9E-12 61.8 5.7 35 83-117 1-35 (73)
30 TIGR02200 GlrX_actino Glutared 98.6 8.8E-08 1.9E-12 63.1 4.6 35 83-117 1-35 (77)
31 cd02977 ArsC_family Arsenate R 98.5 9.4E-08 2E-12 68.3 4.3 34 84-117 1-34 (105)
32 cd03036 ArsC_like Arsenate Red 98.5 1.3E-07 2.9E-12 68.8 3.9 35 84-118 1-35 (111)
33 cd02973 TRX_GRX_like Thioredox 98.4 4.1E-07 8.9E-12 59.2 4.2 35 83-117 2-41 (67)
34 PRK01655 spxA transcriptional 98.4 4.9E-07 1.1E-11 67.9 4.5 35 84-118 2-36 (131)
35 KOG2824 Glutaredoxin-related p 98.4 4.3E-07 9.4E-12 76.3 4.5 65 81-145 130-225 (281)
36 cd03032 ArsC_Spx Arsenate Redu 98.2 1.6E-06 3.4E-11 63.3 4.6 34 84-117 2-35 (115)
37 TIGR01617 arsC_related transcr 98.2 1.3E-06 2.9E-11 63.8 4.0 34 84-117 1-34 (117)
38 cd03041 GST_N_2GST_N GST_N fam 98.2 6.2E-06 1.3E-10 55.5 6.1 33 84-116 2-34 (77)
39 PRK12559 transcriptional regul 98.2 2.6E-06 5.7E-11 64.1 4.6 35 84-118 2-36 (131)
40 cd03040 GST_N_mPGES2 GST_N fam 98.1 3.8E-06 8.3E-11 56.0 4.4 34 83-116 1-34 (77)
41 PRK13344 spxA transcriptional 98.1 3.6E-06 7.9E-11 63.4 4.5 35 84-118 2-36 (132)
42 cd03037 GST_N_GRX2 GST_N famil 98.1 8.6E-06 1.9E-10 53.5 5.5 32 85-116 2-33 (71)
43 cd03035 ArsC_Yffb Arsenate Red 98.0 5.9E-06 1.3E-10 59.9 4.1 35 84-118 1-35 (105)
44 cd00570 GST_N_family Glutathio 98.0 2.4E-05 5.1E-10 48.9 5.9 33 85-117 2-34 (71)
45 cd03033 ArsC_15kD Arsenate Red 97.9 2.3E-05 5E-10 57.6 4.5 35 83-117 1-35 (113)
46 cd03060 GST_N_Omega_like GST_N 97.8 4E-05 8.8E-10 50.5 4.4 33 85-117 2-34 (71)
47 cd03059 GST_N_SspA GST_N famil 97.8 9.8E-05 2.1E-09 48.2 6.0 33 84-116 1-33 (73)
48 cd03026 AhpF_NTD_C TRX-GRX-lik 97.8 3.7E-05 8.1E-10 54.0 4.1 47 71-117 3-54 (89)
49 TIGR00411 redox_disulf_1 small 97.8 1.7E-05 3.6E-10 52.8 2.2 35 83-117 2-42 (82)
50 cd02975 PfPDO_like_N Pyrococcu 97.7 5.7E-05 1.2E-09 54.7 4.2 48 70-117 10-64 (113)
51 cd03051 GST_N_GTT2_like GST_N 97.6 0.00011 2.5E-09 47.5 4.1 33 85-117 2-34 (74)
52 TIGR01295 PedC_BrcD bacterioci 97.5 0.00029 6.3E-09 52.0 6.0 33 84-116 27-63 (122)
53 PF13417 GST_N_3: Glutathione 97.5 0.00023 4.9E-09 47.5 4.9 31 86-116 1-31 (75)
54 cd03055 GST_N_Omega GST_N fami 97.5 0.00026 5.7E-09 48.9 4.9 36 81-116 16-51 (89)
55 cd03045 GST_N_Delta_Epsilon GS 97.4 0.00026 5.7E-09 46.3 4.7 34 84-117 1-34 (74)
56 cd03054 GST_N_Metaxin GST_N fa 97.4 0.00048 1E-08 45.3 5.9 44 90-133 14-70 (72)
57 PHA02125 thioredoxin-like prot 97.4 0.00017 3.6E-09 48.5 3.7 31 84-116 2-32 (75)
58 PF05768 DUF836: Glutaredoxin- 97.4 0.00019 4E-09 49.2 3.9 35 83-117 1-39 (81)
59 KOG3029 Glutathione S-transfer 97.3 0.00044 9.5E-09 59.1 5.3 45 73-117 78-124 (370)
60 COG0278 Glutaredoxin-related p 97.3 7.6E-05 1.6E-09 54.6 0.6 19 35-53 64-82 (105)
61 TIGR00412 redox_disulf_2 small 97.3 0.00046 1E-08 46.6 4.4 32 84-116 3-38 (76)
62 cd03056 GST_N_4 GST_N family, 97.2 0.00079 1.7E-08 43.6 4.7 34 84-117 1-34 (73)
63 PF04908 SH3BGR: SH3-binding, 97.2 0.00064 1.4E-08 49.2 4.6 59 84-142 3-97 (99)
64 TIGR00014 arsC arsenate reduct 97.1 0.00061 1.3E-08 49.8 4.2 35 84-118 1-35 (114)
65 COG1393 ArsC Arsenate reductas 97.1 0.00085 1.8E-08 49.8 4.7 35 83-117 2-36 (117)
66 TIGR01616 nitro_assoc nitrogen 97.1 0.00083 1.8E-08 50.3 4.7 35 83-117 2-36 (126)
67 cd03034 ArsC_ArsC Arsenate Red 97.1 0.0007 1.5E-08 49.3 4.1 34 84-117 1-34 (112)
68 cd03061 GST_N_CLIC GST_N famil 97.1 0.0027 5.8E-08 45.2 7.0 34 83-116 5-46 (91)
69 PRK10853 putative reductase; P 97.1 0.00076 1.7E-08 49.9 4.2 34 84-117 2-35 (118)
70 cd03080 GST_N_Metaxin_like GST 97.0 0.0033 7.2E-08 41.8 6.2 50 84-133 2-71 (75)
71 PRK10026 arsenate reductase; P 96.9 0.0017 3.8E-08 49.7 4.8 36 82-117 2-37 (141)
72 KOG0911 Glutaredoxin-related p 96.8 0.00032 7E-09 57.6 0.4 24 34-59 186-209 (227)
73 cd01659 TRX_superfamily Thiore 96.8 0.0018 3.9E-08 38.1 3.3 34 84-117 1-39 (69)
74 cd03053 GST_N_Phi GST_N family 96.8 0.0048 1E-07 40.5 5.6 34 84-117 2-35 (76)
75 TIGR02187 GlrX_arch Glutaredox 96.8 0.0023 5E-08 51.0 4.7 48 70-117 123-175 (215)
76 cd03058 GST_N_Tau GST_N family 96.7 0.0029 6.3E-08 41.6 4.2 33 84-116 1-33 (74)
77 cd02947 TRX_family TRX family; 96.7 0.0032 7E-08 40.9 4.4 34 84-117 14-52 (93)
78 cd03052 GST_N_GDAP1 GST_N fami 96.7 0.005 1.1E-07 41.1 5.2 52 84-137 1-52 (73)
79 cd02959 ERp19 Endoplasmic reti 96.5 0.0072 1.6E-07 44.1 5.7 48 71-118 8-63 (117)
80 cd02953 DsbDgamma DsbD gamma f 96.5 0.0036 7.9E-08 43.6 3.8 28 75-102 4-33 (104)
81 PRK13728 conjugal transfer pro 96.5 0.0038 8.3E-08 49.7 4.3 34 84-117 73-110 (181)
82 cd02949 TRX_NTR TRX domain, no 96.5 0.0062 1.4E-07 42.1 4.7 34 84-117 17-56 (97)
83 PRK10387 glutaredoxin 2; Provi 96.3 0.011 2.4E-07 45.7 6.0 32 84-115 1-32 (210)
84 cd02954 DIM1 Dim1 family; Dim1 96.3 0.0074 1.6E-07 44.7 4.5 34 84-117 18-57 (114)
85 cd03042 GST_N_Zeta GST_N famil 96.2 0.012 2.6E-07 38.0 4.9 34 85-118 2-35 (73)
86 COG4545 Glutaredoxin-related p 96.2 0.0068 1.5E-07 42.5 3.7 32 85-116 5-36 (85)
87 TIGR02182 GRXB Glutaredoxin, G 96.2 0.013 2.8E-07 46.3 5.8 30 86-115 2-31 (209)
88 PTZ00051 thioredoxin; Provisio 96.1 0.016 3.5E-07 39.5 5.3 42 75-116 11-59 (98)
89 PHA02278 thioredoxin-like prot 96.1 0.017 3.7E-07 41.5 5.6 37 80-116 13-56 (103)
90 PF13098 Thioredoxin_2: Thiore 96.1 0.0041 8.8E-08 43.6 2.2 22 82-103 7-28 (112)
91 cd03049 GST_N_3 GST_N family, 96.1 0.0097 2.1E-07 38.9 3.8 32 85-116 2-35 (73)
92 PF03960 ArsC: ArsC family; I 96.0 0.0067 1.5E-07 43.6 3.2 31 87-117 1-31 (110)
93 cd02994 PDI_a_TMX PDIa family, 96.0 0.014 3E-07 40.2 4.5 41 77-117 13-60 (101)
94 cd02985 TRX_CDSP32 TRX family, 95.8 0.019 4.2E-07 40.4 4.6 33 84-116 19-56 (103)
95 PRK15317 alkyl hydroperoxide r 95.7 0.012 2.6E-07 52.6 4.2 53 63-115 99-156 (517)
96 cd03038 GST_N_etherase_LigE GS 95.7 0.017 3.7E-07 38.9 4.1 27 90-116 14-40 (84)
97 PF13728 TraF: F plasmid trans 95.7 0.021 4.5E-07 46.2 5.2 47 70-116 110-160 (215)
98 cd02951 SoxW SoxW family; SoxW 95.7 0.014 3.1E-07 42.0 3.7 29 74-102 5-36 (125)
99 TIGR03140 AhpF alkyl hydropero 95.7 0.0088 1.9E-07 53.5 3.1 45 63-107 100-144 (515)
100 TIGR02187 GlrX_arch Glutaredox 95.6 0.016 3.6E-07 46.1 4.0 41 75-115 14-62 (215)
101 PF00085 Thioredoxin: Thioredo 95.6 0.018 4E-07 38.9 3.7 34 84-117 21-60 (103)
102 cd03050 GST_N_Theta GST_N fami 95.5 0.039 8.4E-07 36.3 5.1 36 84-119 1-36 (76)
103 cd02989 Phd_like_TxnDC9 Phosdu 95.5 0.05 1.1E-06 39.2 5.9 37 81-117 22-64 (113)
104 PRK10877 protein disulfide iso 95.4 0.014 3.1E-07 47.5 3.1 33 83-115 110-145 (232)
105 PRK09481 sspA stringent starva 95.4 0.025 5.4E-07 44.4 4.3 35 82-116 9-43 (211)
106 TIGR02740 TraF-like TraF-like 95.3 0.036 7.9E-07 46.3 5.4 44 73-116 159-206 (271)
107 cd02993 PDI_a_APS_reductase PD 95.2 0.043 9.3E-07 38.8 4.8 35 82-116 23-64 (109)
108 COG2999 GrxB Glutaredoxin 2 [P 95.2 0.029 6.3E-07 45.3 4.2 48 85-132 2-69 (215)
109 TIGR03143 AhpF_homolog putativ 95.2 0.039 8.4E-07 50.0 5.5 53 65-117 461-518 (555)
110 cd03039 GST_N_Sigma_like GST_N 95.1 0.042 9.2E-07 35.8 4.3 32 85-116 2-33 (72)
111 PF13409 GST_N_2: Glutathione 95.1 0.048 1E-06 35.9 4.4 24 91-114 1-24 (70)
112 cd02996 PDI_a_ERp44 PDIa famil 95.0 0.043 9.3E-07 38.4 4.2 21 84-104 22-42 (108)
113 cd03044 GST_N_EF1Bgamma GST_N 95.0 0.041 8.9E-07 36.3 3.9 33 85-117 2-34 (75)
114 KOG3425 Uncharacterized conser 94.9 0.089 1.9E-06 39.8 5.9 49 69-117 13-76 (128)
115 TIGR00862 O-ClC intracellular 94.9 0.1 2.3E-06 42.8 6.9 44 90-133 17-80 (236)
116 cd03076 GST_N_Pi GST_N family, 94.9 0.064 1.4E-06 35.4 4.7 33 83-115 1-33 (73)
117 cd03048 GST_N_Ure2p_like GST_N 94.9 0.058 1.2E-06 35.9 4.5 32 84-116 2-33 (81)
118 cd02961 PDI_a_family Protein D 94.9 0.044 9.6E-07 36.3 3.9 29 76-104 9-39 (101)
119 cd02948 TRX_NDPK TRX domain, T 94.8 0.051 1.1E-06 38.0 4.1 32 84-115 21-59 (102)
120 cd02952 TRP14_like Human TRX-r 94.8 0.05 1.1E-06 40.4 4.2 33 84-116 25-70 (119)
121 cd03020 DsbA_DsbC_DsbG DsbA fa 94.7 0.032 7E-07 43.6 3.2 33 82-114 79-113 (197)
122 cd02960 AGR Anterior Gradient 94.6 0.06 1.3E-06 40.7 4.3 33 70-102 11-45 (130)
123 TIGR02738 TrbB type-F conjugat 94.6 0.072 1.6E-06 41.0 4.8 38 80-117 50-91 (153)
124 cd02997 PDI_a_PDIR PDIa family 94.5 0.046 9.9E-07 37.3 3.3 20 84-103 21-40 (104)
125 cd03000 PDI_a_TMX3 PDIa family 94.5 0.034 7.4E-07 38.8 2.6 28 77-104 11-39 (104)
126 PF13899 Thioredoxin_7: Thiore 94.5 0.034 7.3E-07 37.5 2.5 45 72-116 7-60 (82)
127 cd02957 Phd_like Phosducin (Ph 94.5 0.12 2.7E-06 36.7 5.6 33 84-116 28-65 (113)
128 cd02950 TxlA TRX-like protein 94.4 0.076 1.7E-06 39.9 4.6 33 84-116 24-62 (142)
129 TIGR02739 TraF type-F conjugat 94.4 0.086 1.9E-06 44.1 5.2 47 70-116 140-190 (256)
130 cd02984 TRX_PICOT TRX domain, 94.4 0.051 1.1E-06 36.8 3.3 21 84-104 18-38 (97)
131 cd02956 ybbN ybbN protein fami 94.3 0.052 1.1E-06 36.9 3.2 21 84-104 16-36 (96)
132 PRK13703 conjugal pilus assemb 94.3 0.1 2.3E-06 43.4 5.5 45 71-115 134-182 (248)
133 PRK11657 dsbG disulfide isomer 94.3 0.039 8.4E-07 45.5 3.0 32 83-114 120-155 (251)
134 TIGR01068 thioredoxin thioredo 94.3 0.092 2E-06 35.2 4.4 35 83-117 17-57 (101)
135 cd02986 DLP Dim1 family, Dim1- 94.3 0.12 2.6E-06 38.4 5.2 34 84-117 18-57 (114)
136 PRK15113 glutathione S-transfe 94.3 0.1 2.2E-06 41.0 5.2 36 81-116 3-40 (214)
137 cd02998 PDI_a_ERp38 PDIa famil 94.2 0.05 1.1E-06 37.0 3.0 21 84-104 22-42 (105)
138 cd02962 TMX2 TMX2 family; comp 94.1 0.093 2E-06 40.4 4.5 34 84-117 51-91 (152)
139 PRK09381 trxA thioredoxin; Pro 94.1 0.11 2.3E-06 36.3 4.5 35 83-117 24-64 (109)
140 cd03047 GST_N_2 GST_N family, 94.0 0.18 3.8E-06 32.9 5.2 32 85-116 2-33 (73)
141 KOG0907 Thioredoxin [Posttrans 93.9 0.13 2.8E-06 37.4 4.8 33 84-116 25-62 (106)
142 cd02987 Phd_like_Phd Phosducin 93.9 0.09 1.9E-06 41.1 4.1 34 83-116 85-124 (175)
143 cd03003 PDI_a_ERdj5_N PDIa fam 93.9 0.055 1.2E-06 37.4 2.6 34 84-117 22-61 (101)
144 KOG0406 Glutathione S-transfer 93.8 0.18 4E-06 41.7 6.0 36 82-117 8-43 (231)
145 cd02999 PDI_a_ERp44_like PDIa 93.6 0.08 1.7E-06 37.2 3.2 21 84-104 22-42 (100)
146 TIGR01126 pdi_dom protein disu 93.6 0.07 1.5E-06 36.0 2.7 21 84-104 17-37 (102)
147 cd03002 PDI_a_MPD1_like PDI fa 93.5 0.066 1.4E-06 37.0 2.6 34 83-116 21-60 (109)
148 cd03006 PDI_a_EFP1_N PDIa fami 93.4 0.084 1.8E-06 38.5 3.1 39 79-117 26-72 (113)
149 PRK10996 thioredoxin 2; Provis 93.4 0.22 4.7E-06 37.1 5.4 21 84-104 56-76 (139)
150 PF14595 Thioredoxin_9: Thiore 93.4 0.081 1.7E-06 39.6 3.0 47 69-115 30-81 (129)
151 cd02963 TRX_DnaJ TRX domain, D 93.3 0.12 2.7E-06 36.8 3.7 34 84-117 28-68 (111)
152 PLN02817 glutathione dehydroge 93.2 0.31 6.6E-06 40.5 6.5 44 69-116 54-97 (265)
153 COG3118 Thioredoxin domain-con 93.1 0.11 2.4E-06 44.5 3.8 49 69-117 31-86 (304)
154 cd02988 Phd_like_VIAF Phosduci 93.0 0.19 4.1E-06 40.0 4.8 44 72-115 90-142 (192)
155 PLN00410 U5 snRNP protein, DIM 93.0 0.14 3E-06 39.3 3.9 34 84-117 27-66 (142)
156 cd03001 PDI_a_P5 PDIa family, 93.0 0.17 3.7E-06 34.4 4.0 21 84-104 22-42 (103)
157 cd02955 SSP411 TRX domain, SSP 92.9 0.28 6E-06 36.5 5.3 25 76-100 9-35 (124)
158 PF13192 Thioredoxin_3: Thiore 92.8 0.13 2.8E-06 34.4 3.1 31 84-115 3-37 (76)
159 cd03004 PDI_a_ERdj5_C PDIa fam 92.8 0.1 2.2E-06 36.0 2.6 34 84-117 23-62 (104)
160 PF06110 DUF953: Eukaryotic pr 92.6 0.17 3.7E-06 37.7 3.8 35 70-104 7-50 (119)
161 cd02995 PDI_a_PDI_a'_C PDIa fa 92.6 0.15 3.3E-06 34.6 3.3 21 84-104 22-42 (104)
162 cd03005 PDI_a_ERp46 PDIa famil 92.6 0.14 3.1E-06 34.7 3.1 22 83-104 19-40 (102)
163 PHA03075 glutaredoxin-like pro 92.5 0.16 3.4E-06 38.2 3.4 33 82-114 3-35 (123)
164 KOG0910 Thioredoxin-like prote 91.9 0.44 9.6E-06 37.1 5.4 47 71-117 50-104 (150)
165 cd03078 GST_N_Metaxin1_like GS 91.7 0.53 1.1E-05 31.6 5.0 44 90-133 14-70 (73)
166 cd03023 DsbA_Com1_like DsbA fa 91.7 0.094 2E-06 37.9 1.4 23 82-104 7-29 (154)
167 cd02967 mauD Methylamine utili 91.1 0.2 4.4E-06 34.8 2.6 21 84-104 25-45 (114)
168 PLN02378 glutathione S-transfe 91.0 0.27 5.9E-06 38.7 3.6 27 90-116 18-44 (213)
169 PLN02473 glutathione S-transfe 90.9 0.47 1E-05 36.8 4.7 32 84-115 3-34 (214)
170 cd03057 GST_N_Beta GST_N famil 90.8 0.52 1.1E-05 30.8 4.2 32 85-117 2-33 (77)
171 cd02972 DsbA_family DsbA famil 90.1 0.24 5.2E-06 32.5 2.1 22 84-105 1-22 (98)
172 cd03009 TryX_like_TryX_NRX Try 89.9 0.42 9.1E-06 34.3 3.5 20 84-103 22-41 (131)
173 TIGR00424 APS_reduc 5'-adenyly 89.8 0.53 1.1E-05 42.5 4.7 34 84-117 375-415 (463)
174 cd03008 TryX_like_RdCVF Trypar 89.8 0.59 1.3E-05 35.8 4.3 26 79-104 23-49 (146)
175 PTZ00062 glutaredoxin; Provisi 89.6 0.72 1.6E-05 37.2 4.9 32 74-105 8-42 (204)
176 cd02992 PDI_a_QSOX PDIa family 89.4 0.43 9.2E-06 34.3 3.1 21 84-104 23-43 (114)
177 cd02965 HyaE HyaE family; HyaE 89.3 0.78 1.7E-05 33.8 4.5 37 81-117 28-72 (111)
178 PRK15412 thiol:disulfide inter 89.3 0.54 1.2E-05 36.5 3.9 32 84-115 72-106 (185)
179 COG0526 TrxA Thiol-disulfide i 88.7 0.33 7.1E-06 31.6 2.0 17 88-104 40-56 (127)
180 TIGR00385 dsbE periplasmic pro 88.7 0.64 1.4E-05 35.5 3.9 31 84-114 67-100 (173)
181 PRK13972 GSH-dependent disulfi 88.4 1.3 2.8E-05 34.6 5.5 32 84-116 2-33 (215)
182 cd03043 GST_N_1 GST_N family, 88.4 0.69 1.5E-05 30.4 3.4 29 89-117 7-35 (73)
183 cd03019 DsbA_DsbA DsbA family, 88.2 0.46 1E-05 35.5 2.7 24 81-104 16-39 (178)
184 cd02966 TlpA_like_family TlpA- 88.2 0.4 8.7E-06 32.0 2.2 23 82-104 21-43 (116)
185 PLN02309 5'-adenylylsulfate re 88.1 0.7 1.5E-05 41.7 4.3 33 83-115 368-407 (457)
186 cd02964 TryX_like_family Trypa 88.1 0.77 1.7E-05 33.3 3.8 20 84-103 21-40 (132)
187 cd02970 PRX_like2 Peroxiredoxi 87.7 1.3 2.8E-05 31.9 4.8 26 78-103 20-47 (149)
188 PRK11752 putative S-transferas 87.6 1.3 2.8E-05 36.4 5.3 38 78-116 39-82 (264)
189 PRK00293 dipZ thiol:disulfide 87.6 1.3 2.9E-05 40.6 5.8 33 69-101 461-495 (571)
190 cd03010 TlpA_like_DsbE TlpA-li 87.4 0.55 1.2E-05 33.5 2.6 23 83-105 28-50 (127)
191 PRK10357 putative glutathione 87.3 0.79 1.7E-05 35.2 3.6 32 85-116 2-33 (202)
192 COG0625 Gst Glutathione S-tran 87.0 0.91 2E-05 35.2 3.9 33 85-117 2-34 (211)
193 PTZ00056 glutathione peroxidas 86.4 1.3 2.8E-05 35.1 4.5 16 84-99 43-58 (199)
194 PTZ00443 Thioredoxin domain-co 86.4 0.62 1.3E-05 38.1 2.7 22 83-104 55-76 (224)
195 TIGR01130 ER_PDI_fam protein d 86.3 1 2.2E-05 38.5 4.1 28 76-103 12-41 (462)
196 cd03046 GST_N_GTT1_like GST_N 86.2 1.6 3.4E-05 28.1 4.1 31 85-116 2-32 (76)
197 PF13462 Thioredoxin_4: Thiore 86.1 0.53 1.2E-05 34.5 2.0 34 82-115 14-55 (162)
198 PF13905 Thioredoxin_8: Thiore 86.0 0.76 1.6E-05 30.9 2.6 21 84-104 5-25 (95)
199 COG3019 Predicted metal-bindin 85.8 2.5 5.4E-05 32.8 5.6 55 82-136 26-104 (149)
200 PTZ00102 disulphide isomerase; 85.7 1.1 2.3E-05 39.0 4.1 21 83-103 52-72 (477)
201 cd03077 GST_N_Alpha GST_N fami 85.7 2 4.3E-05 28.7 4.5 32 84-115 2-33 (79)
202 TIGR01262 maiA maleylacetoacet 85.1 0.92 2E-05 34.9 3.0 30 86-115 2-31 (210)
203 TIGR02661 MauD methylamine deh 85.0 0.9 2E-05 35.4 2.9 30 84-113 78-111 (189)
204 cd03011 TlpA_like_ScsD_MtbDsbE 84.8 0.86 1.9E-05 32.0 2.5 24 82-105 22-45 (123)
205 cd03012 TlpA_like_DipZ_like Tl 84.5 1 2.2E-05 32.3 2.8 22 83-104 26-47 (126)
206 cd05295 MDH_like Malate dehydr 84.5 1.5 3.2E-05 39.6 4.4 46 89-134 1-83 (452)
207 KOG4023 Uncharacterized conser 84.4 2.1 4.6E-05 31.4 4.4 47 97-143 23-98 (108)
208 PLN02399 phospholipid hydroper 84.2 2.8 6.1E-05 34.5 5.6 35 82-116 101-142 (236)
209 KOG4244 Failed axon connection 83.7 2.8 6.1E-05 35.6 5.5 56 77-132 39-114 (281)
210 cd00340 GSH_Peroxidase Glutath 83.4 2 4.3E-05 32.0 4.1 20 84-104 26-45 (152)
211 COG2143 Thioredoxin-related pr 82.8 1.6 3.4E-05 34.8 3.4 31 73-103 33-65 (182)
212 cd03079 GST_N_Metaxin2 GST_N f 81.5 6.1 0.00013 26.9 5.6 25 90-114 15-39 (74)
213 cd02958 UAS UAS family; UAS is 81.5 2.3 5E-05 30.1 3.7 33 71-103 6-41 (114)
214 PF08534 Redoxin: Redoxin; In 81.4 1.4 3.1E-05 32.0 2.6 37 81-117 28-73 (146)
215 PTZ00102 disulphide isomerase; 80.9 1.3 2.8E-05 38.5 2.6 21 84-104 379-399 (477)
216 PF02798 GST_N: Glutathione S- 80.6 3 6.4E-05 27.6 3.7 50 84-137 3-53 (76)
217 PLN02412 probable glutathione 79.9 4.3 9.2E-05 31.0 4.9 14 84-97 33-46 (167)
218 PRK03147 thiol-disulfide oxido 79.5 1.7 3.7E-05 32.3 2.6 21 83-103 64-84 (173)
219 TIGR02540 gpx7 putative glutat 78.9 2.1 4.5E-05 31.8 2.8 17 84-100 26-42 (153)
220 TIGR03137 AhpC peroxiredoxin. 78.2 4.6 9.9E-05 31.4 4.7 36 80-115 30-74 (187)
221 PF00578 AhpC-TSA: AhpC/TSA fa 77.5 1.5 3.4E-05 30.5 1.7 23 81-103 25-49 (124)
222 cd03065 PDI_b_Calsequestrin_N 75.7 6.7 0.00015 28.9 4.7 36 82-117 28-76 (120)
223 TIGR01130 ER_PDI_fam protein d 75.4 2.4 5.3E-05 36.2 2.7 21 84-104 368-388 (462)
224 cd02982 PDI_b'_family Protein 75.2 3.6 7.8E-05 27.8 3.0 36 81-116 13-54 (103)
225 PF11760 CbiG_N: Cobalamin syn 74.8 4.4 9.6E-05 28.5 3.4 61 72-132 2-69 (84)
226 cd03017 PRX_BCP Peroxiredoxin 73.9 6.6 0.00014 28.0 4.3 19 81-99 23-43 (140)
227 KOG2501 Thioredoxin, nucleored 73.3 19 0.00041 28.2 6.9 40 78-117 30-77 (157)
228 PTZ00256 glutathione peroxidas 72.5 3.8 8.2E-05 31.7 2.9 15 85-99 46-60 (183)
229 PRK09437 bcp thioredoxin-depen 72.2 8.3 0.00018 28.3 4.5 19 80-98 29-49 (154)
230 cd03018 PRX_AhpE_like Peroxire 71.4 5.1 0.00011 29.0 3.2 22 82-103 29-52 (149)
231 KOG0190 Protein disulfide isom 71.0 2.5 5.4E-05 38.6 1.7 28 82-109 386-413 (493)
232 KOG1422 Intracellular Cl- chan 70.4 9.5 0.00021 31.5 4.8 25 91-115 20-44 (221)
233 PLN02395 glutathione S-transfe 69.8 9.7 0.00021 29.3 4.6 32 84-116 3-34 (215)
234 cd03015 PRX_Typ2cys Peroxiredo 68.5 8.6 0.00019 29.1 4.0 35 81-115 29-72 (173)
235 cd02968 SCO SCO (an acronym fo 68.4 5.6 0.00012 28.4 2.8 21 83-103 25-46 (142)
236 PF01323 DSBA: DSBA-like thior 67.6 4.2 9.1E-05 30.6 2.1 33 83-115 1-38 (193)
237 cd02971 PRX_family Peroxiredox 66.0 6.9 0.00015 27.8 2.9 24 80-103 21-46 (140)
238 smart00594 UAS UAS domain. 65.2 9.2 0.0002 27.6 3.4 30 71-100 16-47 (122)
239 PRK10824 glutaredoxin-4; Provi 65.1 2.2 4.8E-05 31.5 0.1 18 36-53 64-81 (115)
240 cd03016 PRX_1cys Peroxiredoxin 64.7 14 0.0003 29.1 4.7 34 82-115 26-68 (203)
241 TIGR01626 ytfJ_HI0045 conserve 63.5 9.2 0.0002 30.4 3.4 39 78-116 57-104 (184)
242 cd02969 PRX_like1 Peroxiredoxi 63.2 7.8 0.00017 29.1 2.9 19 84-102 29-47 (171)
243 KOG0867 Glutathione S-transfer 62.7 13 0.00029 29.8 4.3 35 83-117 2-36 (226)
244 cd02064 FAD_synthetase_N FAD s 61.7 37 0.0008 26.2 6.5 70 70-140 86-163 (180)
245 PRK10606 btuE putative glutath 60.9 19 0.00041 28.4 4.7 17 83-99 28-44 (183)
246 PRK14018 trifunctional thiored 60.8 7.3 0.00016 35.8 2.7 21 84-104 60-80 (521)
247 KOG0908 Thioredoxin-like prote 59.7 8.8 0.00019 32.7 2.8 34 83-116 24-62 (288)
248 KOG0912 Thiol-disulfide isomer 58.9 9.8 0.00021 33.4 3.0 31 75-105 6-38 (375)
249 cd03014 PRX_Atyp2cys Peroxired 58.7 11 0.00024 27.2 2.9 24 81-104 26-51 (143)
250 PRK05282 (alpha)-aspartyl dipe 58.7 54 0.0012 26.9 7.2 75 69-143 18-108 (233)
251 cd02974 AhpF_NTD_N Alkyl hydro 58.6 17 0.00036 25.7 3.7 34 70-104 9-42 (94)
252 PF04134 DUF393: Protein of un 58.5 12 0.00027 26.2 3.0 28 87-114 2-31 (114)
253 PRK05788 cobalamin biosynthesi 57.2 25 0.00053 30.2 5.2 64 69-132 39-109 (315)
254 cd03025 DsbA_FrnE_like DsbA fa 57.0 6.9 0.00015 29.5 1.6 22 83-104 2-23 (193)
255 TIGR01689 EcbF-BcbF capsule bi 55.9 55 0.0012 24.3 6.3 49 69-117 27-88 (126)
256 PTZ00137 2-Cys peroxiredoxin; 55.6 26 0.00056 29.3 4.9 41 76-116 93-142 (261)
257 PRK15000 peroxidase; Provision 55.5 26 0.00057 27.7 4.8 20 80-99 33-54 (200)
258 cd03075 GST_N_Mu GST_N family, 55.0 29 0.00063 23.1 4.3 34 86-119 3-36 (82)
259 PRK10954 periplasmic protein d 54.7 8.1 0.00018 30.4 1.7 20 81-100 38-57 (207)
260 COG2761 FrnE Predicted dithiol 54.6 6 0.00013 32.7 1.0 23 83-105 7-29 (225)
261 KOG0190 Protein disulfide isom 53.8 21 0.00046 32.7 4.4 43 73-115 33-84 (493)
262 PRK13599 putative peroxiredoxi 52.3 30 0.00065 27.8 4.7 35 81-115 28-71 (215)
263 TIGR03865 PQQ_CXXCW PQQ-depend 52.3 18 0.0004 27.6 3.3 29 80-108 115-143 (162)
264 TIGR03143 AhpF_homolog putativ 51.9 17 0.00037 32.9 3.6 32 83-114 369-405 (555)
265 PF10087 DUF2325: Uncharacteri 51.2 47 0.001 22.9 5.0 42 72-113 39-82 (97)
266 COG1651 DsbG Protein-disulfide 51.1 12 0.00026 29.7 2.2 24 81-104 85-108 (244)
267 PF01522 Polysacc_deac_1: Poly 49.9 17 0.00037 25.2 2.6 37 73-110 87-123 (123)
268 cd04911 ACT_AKiii-YclM-BS_1 AC 49.8 17 0.00036 25.1 2.4 25 90-114 13-37 (76)
269 COG3340 PepE Peptidase E [Amin 49.2 1.3E+02 0.0027 25.1 7.8 71 71-141 20-112 (224)
270 TIGR03759 conj_TIGR03759 integ 48.1 35 0.00075 27.8 4.4 36 80-115 108-143 (200)
271 PF10568 Tom37: Outer mitochon 48.0 40 0.00088 22.5 4.1 41 92-132 14-71 (72)
272 PRK13190 putative peroxiredoxi 47.9 29 0.00062 27.4 3.9 34 82-115 28-70 (202)
273 PTZ00057 glutathione s-transfe 47.8 38 0.00083 26.1 4.5 33 83-115 4-36 (205)
274 cd03022 DsbA_HCCA_Iso DsbA fam 47.2 16 0.00034 27.4 2.2 27 84-110 1-31 (192)
275 PF02780 Transketolase_C: Tran 45.7 25 0.00054 25.2 3.0 35 80-114 8-43 (124)
276 COG1651 DsbG Protein-disulfide 45.4 14 0.00031 29.3 1.8 24 83-106 121-144 (244)
277 PF03227 GILT: Gamma interfero 45.3 14 0.00031 26.4 1.6 20 83-102 2-23 (108)
278 KOG1734 Predicted RING-contain 44.6 12 0.00026 32.2 1.3 16 86-101 267-282 (328)
279 PRK13191 putative peroxiredoxi 44.4 49 0.0011 26.5 4.8 35 81-115 33-76 (215)
280 PF02662 FlpD: Methyl-viologen 44.2 67 0.0014 23.7 5.1 64 83-146 1-91 (124)
281 PRK10382 alkyl hydroperoxide r 44.0 41 0.00088 26.4 4.2 17 82-98 32-50 (187)
282 PRK00758 GMP synthase subunit 41.8 87 0.0019 23.9 5.7 57 85-144 2-66 (184)
283 cd03024 DsbA_FrnE DsbA family, 40.9 24 0.00051 26.8 2.3 20 84-103 1-20 (201)
284 PLN02919 haloacid dehalogenase 40.7 21 0.00046 35.4 2.5 21 84-104 424-444 (1057)
285 cd03013 PRX5_like Peroxiredoxi 40.6 71 0.0015 23.9 4.9 39 77-115 25-74 (155)
286 PF03575 Peptidase_S51: Peptid 40.5 46 0.001 24.8 3.8 50 94-143 1-64 (154)
287 PRK15317 alkyl hydroperoxide r 40.5 33 0.00071 30.7 3.5 35 70-105 9-43 (517)
288 KOG0191 Thioredoxin/protein di 40.4 22 0.00048 30.6 2.3 25 80-104 47-71 (383)
289 cd03021 DsbA_GSTK DsbA family, 39.4 34 0.00074 26.7 3.1 28 83-110 2-33 (209)
290 PRK13189 peroxiredoxin; Provis 39.3 59 0.0013 26.1 4.5 35 81-115 35-78 (222)
291 cd01444 GlpE_ST GlpE sulfurtra 39.0 86 0.0019 20.6 4.7 38 70-108 45-82 (96)
292 PF11009 DUF2847: Protein of u 38.5 66 0.0014 23.5 4.2 37 81-117 19-62 (105)
293 KOG0191 Thioredoxin/protein di 37.2 20 0.00044 30.8 1.6 25 80-104 162-186 (383)
294 cd01520 RHOD_YbbB Member of th 37.1 1E+02 0.0022 22.1 5.1 34 79-114 84-117 (128)
295 cd01524 RHOD_Pyr_redox Member 37.0 1.2E+02 0.0025 20.0 5.1 37 70-107 40-76 (90)
296 KOG4277 Uncharacterized conser 36.7 11 0.00023 33.2 -0.2 27 84-110 47-73 (468)
297 PRK00522 tpx lipid hydroperoxi 36.6 35 0.00076 25.8 2.7 23 82-104 45-69 (167)
298 TIGR03140 AhpF alkyl hydropero 36.3 41 0.00089 30.1 3.5 35 70-105 9-43 (515)
299 PF03190 Thioredox_DsbH: Prote 35.2 37 0.0008 26.6 2.6 16 85-100 42-57 (163)
300 PF15643 Tox-PL-2: Papain fold 34.5 1.2E+02 0.0026 22.1 5.0 26 91-116 20-46 (100)
301 PF06053 DUF929: Domain of unk 33.2 24 0.00053 29.5 1.4 24 84-107 62-89 (249)
302 PTZ00253 tryparedoxin peroxida 33.0 81 0.0017 24.5 4.3 35 82-116 37-80 (199)
303 COG4052 Uncharacterized protei 32.5 46 0.001 28.3 2.9 68 69-136 119-196 (310)
304 PF02114 Phosducin: Phosducin; 32.4 63 0.0014 27.0 3.8 64 84-147 150-240 (265)
305 KOG0913 Thiol-disulfide isomer 32.3 24 0.00052 29.6 1.2 41 77-117 36-83 (248)
306 PRK10542 glutathionine S-trans 31.8 58 0.0013 24.5 3.2 29 86-115 3-31 (201)
307 PF13743 Thioredoxin_5: Thiore 30.6 38 0.00083 26.1 2.0 19 86-104 2-20 (176)
308 PF14451 Ub-Mut7C: Mut7-C ubiq 30.5 30 0.00065 23.9 1.3 33 91-123 28-60 (81)
309 cd01521 RHOD_PspE2 Member of t 29.7 1.1E+02 0.0024 21.1 4.1 30 79-108 62-92 (110)
310 COG1631 RPL42A Ribosomal prote 29.4 16 0.00036 26.3 -0.2 9 89-97 8-16 (94)
311 cd00755 YgdL_like Family of ac 28.5 70 0.0015 26.1 3.3 22 87-108 151-172 (231)
312 PF06764 DUF1223: Protein of u 28.2 58 0.0013 26.3 2.7 23 84-106 2-24 (202)
313 KOG1800 Ferredoxin/adrenodoxin 28.1 55 0.0012 29.7 2.8 63 42-112 370-432 (468)
314 KOG4420 Uncharacterized conser 27.8 28 0.00061 30.0 0.9 33 84-116 27-59 (325)
315 cd03007 PDI_a_ERp29_N PDIa fam 27.7 1.7E+02 0.0036 21.5 4.9 39 77-115 13-60 (116)
316 TIGR03190 benz_CoA_bzdN benzoy 27.0 1.1E+02 0.0023 26.6 4.4 46 72-117 302-354 (377)
317 KOG0344 ATP-dependent RNA heli 26.9 64 0.0014 30.4 3.1 53 81-138 387-440 (593)
318 KOG2454 Betaine aldehyde dehyd 26.8 80 0.0017 28.9 3.5 42 73-114 208-254 (583)
319 PF03354 Terminase_1: Phage Te 26.7 1.5E+02 0.0033 26.3 5.4 64 54-117 338-403 (477)
320 PF00403 HMA: Heavy-metal-asso 26.4 71 0.0015 19.7 2.4 26 90-115 7-34 (62)
321 cd01449 TST_Repeat_2 Thiosulfa 26.1 1.3E+02 0.0029 20.6 4.1 39 69-108 64-104 (118)
322 smart00450 RHOD Rhodanese Homo 25.9 1.4E+02 0.0031 18.9 4.0 28 80-108 55-82 (100)
323 COG0041 PurE Phosphoribosylcar 25.8 1.2E+02 0.0026 24.0 4.0 33 85-117 8-40 (162)
324 cd01448 TST_Repeat_1 Thiosulfa 25.8 1.6E+02 0.0034 20.5 4.4 40 69-108 65-106 (122)
325 TIGR02263 benz_CoA_red_C benzo 25.1 98 0.0021 26.9 3.8 45 72-116 310-361 (380)
326 PF09413 DUF2007: Domain of un 24.5 60 0.0013 20.6 1.8 30 86-115 3-32 (67)
327 PF08821 CGGC: CGGC domain; I 24.4 2.6E+02 0.0056 20.2 5.3 41 68-108 51-101 (107)
328 COG2333 ComEC Predicted hydrol 23.9 67 0.0015 27.4 2.5 36 96-131 77-113 (293)
329 cd01528 RHOD_2 Member of the R 23.7 2.3E+02 0.0051 18.9 5.7 37 71-108 45-84 (101)
330 COG3867 Arabinogalactan endo-1 23.7 1.7E+02 0.0037 25.9 4.9 52 81-134 53-109 (403)
331 PF00004 AAA: ATPase family as 23.4 1.2E+02 0.0026 20.6 3.4 31 84-114 1-31 (132)
332 PF07728 AAA_5: AAA domain (dy 23.1 1.3E+02 0.0027 21.4 3.5 35 83-117 1-35 (139)
333 PF03470 zf-XS: XS zinc finger 23.0 28 0.00062 21.6 0.1 6 92-97 1-6 (43)
334 PF08218 Citrate_ly_lig: Citra 22.4 1.2E+02 0.0027 24.3 3.6 51 90-141 117-171 (182)
335 PLN00020 ribulose bisphosphate 22.1 1E+02 0.0023 27.7 3.4 43 84-126 151-193 (413)
336 COG3011 Predicted thiol-disulf 21.6 2.2E+02 0.0048 21.8 4.7 35 80-114 6-42 (137)
337 COG3642 Mn2+-dependent serine/ 21.5 3.2E+02 0.0069 22.4 5.8 61 62-135 28-93 (204)
338 PF14437 MafB19-deam: MafB19-l 21.4 2.2E+02 0.0048 22.1 4.7 34 81-114 99-135 (146)
339 cd01447 Polysulfide_ST Polysul 21.2 1.5E+02 0.0032 19.6 3.4 28 80-108 60-87 (103)
340 COG1139 Uncharacterized conser 21.2 1.2E+02 0.0027 27.6 3.7 51 66-116 85-137 (459)
341 PRK13527 glutamine amidotransf 21.0 3.7E+02 0.0079 20.8 6.0 41 84-124 5-51 (200)
342 PF14424 Toxin-deaminase: The 20.8 1.5E+02 0.0032 22.3 3.6 23 82-104 97-120 (133)
343 PRK05627 bifunctional riboflav 20.0 4.1E+02 0.009 22.5 6.5 71 69-140 99-178 (305)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.89 E-value=3.3e-23 Score=148.68 Aligned_cols=74 Identities=39% Similarity=0.636 Sum_probs=69.3
Q ss_pred HHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC------------------------CCeEeccchhHHH
Q 032016 75 VKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------------------------GGKHIGGCTDTVK 130 (149)
Q Consensus 75 v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~------------------------~G~~IGG~ddl~~ 130 (149)
|+++|++++|+||++++||||+++|++|+++|++|+++|||.+ +|++|||+||+.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 3578999999999999999999999999999999999999865 3899999999999
Q ss_pred HHHcCCcHHHHHhhhhcc
Q 032016 131 LYRKGELEPLLSEAKSAE 148 (149)
Q Consensus 131 l~~~GeL~~lL~~~ga~~ 148 (149)
++++|+|+++|+++|+++
T Consensus 81 l~~~G~L~~~l~~~~~~~ 98 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALW 98 (99)
T ss_pred HHHcCCHHHHHHHhCccc
Confidence 999999999999999874
No 2
>PRK10824 glutaredoxin-4; Provisional
Probab=99.88 E-value=2.3e-22 Score=148.99 Aligned_cols=78 Identities=24% Similarity=0.582 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEec
Q 032016 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIG 123 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IG 123 (149)
+..++|+++|+.++||||+| |+||||++|+++|+++|++|.++|++.+ +|+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46789999999999999999 5999999999999999999999999865 399999
Q ss_pred cchhHHHHHHcCCcHHHHHhhhhc
Q 032016 124 GCTDTVKLYRKGELEPLLSEAKSA 147 (149)
Q Consensus 124 G~ddl~~l~~~GeL~~lL~~~ga~ 147 (149)
|+|++.+++++|+|.++|+++|++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999985
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.8e-22 Score=143.91 Aligned_cols=78 Identities=51% Similarity=0.809 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC------------------------CCeEeccch
Q 032016 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------------------------GGKHIGGCT 126 (149)
Q Consensus 71 ~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~------------------------~G~~IGG~d 126 (149)
.++++++++++++||||+|++||||+++|++|...++++.++++|++ +|+||||++
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~ 82 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGAS 82 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHH
Confidence 45689999999999999999999999999999999999999999986 299999999
Q ss_pred hHHHHHHcCCcHHHHHhhhhcc
Q 032016 127 DTVKLYRKGELEPLLSEAKSAE 148 (149)
Q Consensus 127 dl~~l~~~GeL~~lL~~~ga~~ 148 (149)
|++++|.+|+|.++|+++|++|
T Consensus 83 dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 83 DLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHHHcCCHHHHHHHhhccC
Confidence 9999999999999999999875
No 4
>PHA03050 glutaredoxin; Provisional
Probab=99.87 E-value=7.3e-22 Score=144.26 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCC---CcEEEEeCCC------------------------CCeEecc
Q 032016 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV---EPLVIELDEM------------------------GGKHIGG 124 (149)
Q Consensus 72 ~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi---~y~~vdid~~------------------------~G~~IGG 124 (149)
+++++++++.++|+||+++|||||++|+++|+++|+ +|+++|+++. +|++|||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 678999999999999999999999999999999999 7999999862 3999999
Q ss_pred chhHHHHHHcCCcHHHHHhhhhc
Q 032016 125 CTDTVKLYRKGELEPLLSEAKSA 147 (149)
Q Consensus 125 ~ddl~~l~~~GeL~~lL~~~ga~ 147 (149)
+||+.+++++|+|.++|+++|++
T Consensus 83 ~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred hHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999999999999986
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.82 E-value=3.3e-20 Score=132.67 Aligned_cols=70 Identities=36% Similarity=0.668 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccc
Q 032016 72 EESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGC 125 (149)
Q Consensus 72 ~~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ 125 (149)
.+++++++++++|+||+| ++||||++||++|+++|++|+++|++.+ +|++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 478999999999999999 8999999999999999999999999764 39999999
Q ss_pred hhHHHHHHcCCcHHHH
Q 032016 126 TDTVKLYRKGELEPLL 141 (149)
Q Consensus 126 ddl~~l~~~GeL~~lL 141 (149)
||+.+++++|+|.++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999876
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.76 E-value=1.5e-18 Score=121.85 Aligned_cols=64 Identities=34% Similarity=0.658 Sum_probs=59.3
Q ss_pred HHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccchhH
Q 032016 75 VKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGCTDT 128 (149)
Q Consensus 75 v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ddl 128 (149)
|+++|++++||||+| ++||||++++++|++.|++|+++|++.+ +|++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 467899999999999 6999999999999999999999999765 39999999999
Q ss_pred HHHHHcCCcH
Q 032016 129 VKLYRKGELE 138 (149)
Q Consensus 129 ~~l~~~GeL~ 138 (149)
+++|++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=4.6e-18 Score=136.78 Aligned_cols=79 Identities=19% Similarity=0.398 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CC
Q 032016 66 SYGSRLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GG 119 (149)
Q Consensus 66 ~~~~~~~~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G 119 (149)
...+++.++++++|+.++|+||+| |+||||++++++|+++|++|.++||+++ +|
T Consensus 97 ~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 97 GSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 345678999999999999999999 6999999999999999999999999765 39
Q ss_pred eEeccchhHHHHHHcCCcHHHHHhh
Q 032016 120 KHIGGCTDTVKLYRKGELEPLLSEA 144 (149)
Q Consensus 120 ~~IGG~ddl~~l~~~GeL~~lL~~~ 144 (149)
+||||+|++++|+++|+|+++|.+.
T Consensus 177 ~~IGG~d~l~~l~~~G~L~~~l~~~ 201 (204)
T PTZ00062 177 ELIGGHDIIKELYESNSLRKVIPDD 201 (204)
T ss_pred EEEcChHHHHHHHHcCChhhhhhhh
Confidence 9999999999999999999999763
No 8
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=121.12 Aligned_cols=76 Identities=30% Similarity=0.635 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcC-CCcEEEEeCCC---------------------CCeEe
Q 032016 70 RLEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLG-VEPLVIELDEM---------------------GGKHI 122 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~g-i~y~~vdid~~---------------------~G~~I 122 (149)
++.++|++.|+.++||+|+| |.|+|+.++.++|...| ++|..+||=++ +|+||
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 56789999999999999999 88999999999999999 79999998544 39999
Q ss_pred ccchhHHHHHHcCCcHHHHHhhh
Q 032016 123 GGCTDTVKLYRKGELEPLLSEAK 145 (149)
Q Consensus 123 GG~ddl~~l~~~GeL~~lL~~~g 145 (149)
||||.+.+|+++|+|+++|++++
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhcC
Confidence 99999999999999999999874
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=99.70 E-value=4.3e-17 Score=112.22 Aligned_cols=61 Identities=36% Similarity=0.641 Sum_probs=57.1
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccchhHHHHHHcCCcHHH
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGCTDTVKLYRKGELEPL 140 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ddl~~l~~~GeL~~l 140 (149)
.+|++|++++||||++++++|+++|++|+++|++.+ +|++|||++++.+++++|+|.++
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~~ 81 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPL 81 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHHH
Confidence 479999999999999999999999999999999765 39999999999999999999998
Q ss_pred HH
Q 032016 141 LS 142 (149)
Q Consensus 141 L~ 142 (149)
|+
T Consensus 82 ~~ 83 (83)
T PRK10638 82 LK 83 (83)
T ss_pred hC
Confidence 85
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.65 E-value=2.7e-16 Score=106.50 Aligned_cols=58 Identities=41% Similarity=0.797 Sum_probs=54.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccchhHHHHHHcCCcHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGCTDTVKLYRKGELEPLL 141 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ddl~~l~~~GeL~~lL 141 (149)
|+||++++||||.+|+++|+++|++|+++|++.+ +|++|||++++.+++++|+|.++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 6899999999999999999999999999999875 399999999999999999999875
No 11
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.60 E-value=2.1e-15 Score=101.79 Aligned_cols=58 Identities=47% Similarity=0.921 Sum_probs=53.4
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCC--cEEEEeCCC------------------------CCeEeccchhHHHHHHcCCc
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVE--PLVIELDEM------------------------GGKHIGGCTDTVKLYRKGEL 137 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~--y~~vdid~~------------------------~G~~IGG~ddl~~l~~~GeL 137 (149)
|++|+++|||||++++++|++++++ |+.++++.+ +|++|||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999998 889888753 39999999999999999999
Q ss_pred HHHH
Q 032016 138 EPLL 141 (149)
Q Consensus 138 ~~lL 141 (149)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 12
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.56 E-value=8.6e-15 Score=97.55 Aligned_cols=53 Identities=42% Similarity=0.711 Sum_probs=49.7
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC----------------------CCeEeccchhHHHHHHcC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM----------------------GGKHIGGCTDTVKLYRKG 135 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~----------------------~G~~IGG~ddl~~l~~~G 135 (149)
+|+||++++||||.+|+++|+++|++|+++|++.+ +|++|||++++++++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 58999999999999999999999999999999864 399999999999999987
No 13
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.55 E-value=1.5e-14 Score=111.25 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=58.1
Q ss_pred CEEEEeeC------CCccHHHHHHHHHhcCCCcEEEEeCCC-------------------------CCeEeccchhHHHH
Q 032016 83 PVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEM-------------------------GGKHIGGCTDTVKL 131 (149)
Q Consensus 83 ~VvIFsK~------~CPfC~kak~lL~~~gi~y~~vdid~~-------------------------~G~~IGG~ddl~~l 131 (149)
+|+||+++ +||||++||++|++++|+|+++||+.+ +|+||||+|++.+|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 58999999 999999999999999999999999754 38999999999999
Q ss_pred HHcCCcHHHHHhh
Q 032016 132 YRKGELEPLLSEA 144 (149)
Q Consensus 132 ~~~GeL~~lL~~~ 144 (149)
|++|+|.++|+++
T Consensus 81 ~e~G~L~~lL~~~ 93 (147)
T cd03031 81 NESGELRKLLKGI 93 (147)
T ss_pred HHcCCHHHHHhhc
Confidence 9999999999875
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.1e-14 Score=99.54 Aligned_cols=55 Identities=44% Similarity=0.779 Sum_probs=50.9
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC-----------------------CCeEeccchhHHHHHHcCCc
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM-----------------------GGKHIGGCTDTVKLYRKGEL 137 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~-----------------------~G~~IGG~ddl~~l~~~GeL 137 (149)
.|+||++++||||+++|++|++.|++|++++++.+ +|++|||++++.+++..|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 68999999999999999999999999999999765 37899999999999998876
No 15
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.53 E-value=1.9e-14 Score=98.41 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=49.7
Q ss_pred HhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC--------------------CCeEeccchhHHHHH
Q 032016 78 TVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM--------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 78 ~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~--------------------~G~~IGG~ddl~~l~ 132 (149)
..++++|+||++++||||+++|++|+++|++|+++|++++ +|++|||++++.++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3467899999999999999999999999999999999865 399999999998874
No 16
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.53 E-value=2.2e-14 Score=96.72 Aligned_cols=58 Identities=53% Similarity=0.995 Sum_probs=53.1
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC------------------------CCeEeccchhHHHHHHcCCcH
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM------------------------GGKHIGGCTDTVKLYRKGELE 138 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~------------------------~G~~IGG~ddl~~l~~~GeL~ 138 (149)
||++|++++||+|++++++|++++++|++++++.+ +|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 68999999999999999999999999999888653 389999999999999999997
Q ss_pred HH
Q 032016 139 PL 140 (149)
Q Consensus 139 ~l 140 (149)
++
T Consensus 81 ~~ 82 (82)
T cd03419 81 KL 82 (82)
T ss_pred CC
Confidence 63
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.51 E-value=2.7e-14 Score=95.77 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=47.5
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccchhHHHHHH
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGCTDTVKLYR 133 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ddl~~l~~ 133 (149)
.+|+||++++||+|++|+++|++.|++|+++|++++ +|++|||++|+.+|++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 368999999999999999999999999999999865 3999999999998863
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.49 E-value=5.8e-14 Score=93.75 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=46.2
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC--------------------CCeEeccchhHHHHH
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM--------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~--------------------~G~~IGG~ddl~~l~ 132 (149)
+|+||++++||||.+|+++|+++|++|+++|++++ +|++|||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999999999999764 389999999999875
No 19
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.5e-13 Score=111.90 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEecc
Q 032016 71 LEESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGG 124 (149)
Q Consensus 71 ~~~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG 124 (149)
+.++++++++.++|++|+| |.|+|++++..+|++++++|..+||-.+ +|+|+||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence 6679999999999999999 7899999999999999999999999654 3999999
Q ss_pred chhHHHHHHcCCcHHHHHhh
Q 032016 125 CTDTVKLYRKGELEPLLSEA 144 (149)
Q Consensus 125 ~ddl~~l~~~GeL~~lL~~~ 144 (149)
||.+.+||++|+|+..|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999999874
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.41 E-value=5.8e-13 Score=92.73 Aligned_cols=52 Identities=33% Similarity=0.627 Sum_probs=45.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcC-----CCcEEEEeCCC-----------------------CCeEeccchhHHHHHHcC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEM-----------------------GGKHIGGCTDTVKLYRKG 135 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~g-----i~y~~vdid~~-----------------------~G~~IGG~ddl~~l~~~G 135 (149)
|+||++++||||.+|+++|++++ ++|+.+|++.+ +|++|||+||+.++++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 78999999999999999999984 67888888632 489999999999998775
No 21
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.39 E-value=6.2e-13 Score=116.20 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=56.8
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC-----------------------------CCeEeccchhHHHHH
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM-----------------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~-----------------------------~G~~IGG~ddl~~l~ 132 (149)
.+|+||++++||||+++|++|++.||+|+++||+++ +|++|||+|++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 469999999999999999999999999999999732 3899999999988
Q ss_pred HcCCcHHHHHhhhh
Q 032016 133 RKGELEPLLSEAKS 146 (149)
Q Consensus 133 ~~GeL~~lL~~~ga 146 (149)
++|+|.++|+..+.
T Consensus 80 ~~g~l~~~~~~~~~ 93 (410)
T PRK12759 80 RAGEVIARVKGSSL 93 (410)
T ss_pred HhCCHHHHhcCCcc
Confidence 99999999987654
No 22
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.38 E-value=1.1e-12 Score=90.40 Aligned_cols=52 Identities=27% Similarity=0.499 Sum_probs=47.4
Q ss_pred CEEEEeeCCCccHHHHHHHHHh-----cCCCcEEEEeCCC-----------------------CCeEeccchhHHHHHHc
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEM-----------------------GGKHIGGCTDTVKLYRK 134 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~-----~gi~y~~vdid~~-----------------------~G~~IGG~ddl~~l~~~ 134 (149)
+|+||++++||||++|+++|++ .|++|+++|++.+ +|++|||++|+.++++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 5899999999999999999999 7999999999753 39999999999999864
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.33 E-value=3.6e-12 Score=82.13 Aligned_cols=50 Identities=40% Similarity=0.596 Sum_probs=46.3
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccchhHHHHH
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~ddl~~l~ 132 (149)
+|++|++++||+|++++.+|++++++|.++|++.+ +|+++||++++++++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 68999999999999999999999999999999764 389999999999886
No 24
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.06 E-value=2.7e-10 Score=78.96 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=33.3
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+|+||++++||||++++++|++.||+|+++|++++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~ 36 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV 36 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC
Confidence 68999999999999999999999999999999865
No 25
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.03 E-value=3.1e-10 Score=75.93 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=32.3
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|+||++++||+|++++++|++.|++|+++|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~ 34 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ 34 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC
Confidence 5799999999999999999999999999999865
No 26
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.92 E-value=8.1e-10 Score=71.25 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=32.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|++|++++||+|++++++|++.|++|+++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 7899999999999999999999999999999876
No 27
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=98.86 E-value=5e-09 Score=74.74 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=50.6
Q ss_pred EEEEeeCC------CccHHHHHHHHHhcCCCcEEEEeCCC-------------------------CCeEeccchhHHHHH
Q 032016 84 VVVYSKTW------CSYSSEVKLLFKRLGVEPLVIELDEM-------------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 84 VvIFsK~~------CPfC~kak~lL~~~gi~y~~vdid~~-------------------------~G~~IGG~ddl~~l~ 132 (149)
|+||+.+- =-.|.+++++|+..||+|+++||+.+ +++||||+||+.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 56777643 34688999999999999999999743 389999999999999
Q ss_pred HcCCcHHHHH
Q 032016 133 RKGELEPLLS 142 (149)
Q Consensus 133 ~~GeL~~lL~ 142 (149)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.64 E-value=5.7e-08 Score=62.68 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=32.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+|++|+.+|||+|++++.+|++.+++|..+|++++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~ 35 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD 35 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC
Confidence 48899999999999999999999999999999764
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.63 E-value=8.8e-08 Score=61.79 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=32.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+|++|+.++||+|++++.+|++.+++|..++++.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~ 35 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED 35 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC
Confidence 58999999999999999999999999999999764
No 30
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.58 E-value=8.8e-08 Score=63.10 Aligned_cols=35 Identities=26% Similarity=0.671 Sum_probs=32.8
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+|++|+.+|||+|++++.+|++.|++|+.+|++++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~ 35 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED 35 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC
Confidence 48999999999999999999999999999999865
No 31
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.54 E-value=9.4e-08 Score=68.28 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=32.0
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|+||++++||+|++|+++|++.|++|+++|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccC
Confidence 5799999999999999999999999999999765
No 32
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.49 E-value=1.3e-07 Score=68.77 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|.||++++||+|++|+++|++.|++|+++|+.+++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 57999999999999999999999999999997663
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.40 E-value=4.1e-07 Score=59.16 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=30.2
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~~ 117 (149)
.|++|+++|||+|++++.+|+++ ++++..+|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~ 41 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF 41 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC
Confidence 58999999999999999999875 577888888754
No 34
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.37 E-value=4.9e-07 Score=67.86 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=32.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|+||++++||+|++|+++|++.||+|+++|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh
Confidence 78999999999999999999999999999997653
No 35
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.3e-07 Score=76.26 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=58.4
Q ss_pred CCCEEEEee------CCCccHHHHHHHHHhcCCCcEEEEeCCC-------------------------CCeEeccchhHH
Q 032016 81 ENPVVVYSK------TWCSYSSEVKLLFKRLGVEPLVIELDEM-------------------------GGKHIGGCTDTV 129 (149)
Q Consensus 81 ~~~VvIFsK------~~CPfC~kak~lL~~~gi~y~~vdid~~-------------------------~G~~IGG~ddl~ 129 (149)
+..||||++ .+--.|..++++|+..+|.|.+.||..+ +|.+|||.++++
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 458999999 4688999999999999999999998654 399999999999
Q ss_pred HHHHcCCcHHHHHhhh
Q 032016 130 KLYRKGELEPLLSEAK 145 (149)
Q Consensus 130 ~l~~~GeL~~lL~~~g 145 (149)
+|++.|+|.++|++..
T Consensus 210 ~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhcchHHHHHhcCC
Confidence 9999999999998753
No 36
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.23 E-value=1.6e-06 Score=63.28 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=32.2
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|.||+.++|++|++|+++|++.|++|+++|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 6799999999999999999999999999999765
No 37
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.23 E-value=1.3e-06 Score=63.77 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=31.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|.||+.++||+|++|+++|++.|++|+++|+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCC
Confidence 4799999999999999999999999999999765
No 38
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.17 E-value=6.2e-06 Score=55.54 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=30.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+.+|+.+.||||++++.+|+++|++|+.++++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~ 34 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK 34 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC
Confidence 679999999999999999999999999999864
No 39
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.17 E-value=2.6e-06 Score=64.08 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=32.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|+||+.++|++|++|+++|++.|++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 78999999999999999999999999999997663
No 40
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.13 E-value=3.8e-06 Score=55.95 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=31.5
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
++.+|+.+.||||++++.+|...|++|++++++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~ 34 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP 34 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc
Confidence 5789999999999999999999999999998864
No 41
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.12 E-value=3.6e-06 Score=63.38 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=32.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|.||+.++|++|++|+++|++.|++|+++|+.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 68999999999999999999999999999997663
No 42
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.10 E-value=8.6e-06 Score=53.52 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=29.4
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.+|+.++||||++++-+|...|++|+.+.++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~ 33 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQN 33 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999999999888764
No 43
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.03 E-value=5.9e-06 Score=59.85 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|+||+.++|+.|++|+++|++.|++|+++|+.+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCC
Confidence 57999999999999999999999999999997663
No 44
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.00 E-value=2.4e-05 Score=48.91 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.2
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|+.++||+|.+++.+|+..|++|++++++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 34 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLG 34 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCC
Confidence 689999999999999999999999999888643
No 45
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.85 E-value=2.3e-05 Score=57.59 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=32.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.|+||+.+.|+.|++|+++|++.|++|+++|+-+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 47899999999999999999999999999999665
No 46
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.78 E-value=4e-05 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=30.5
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
++|+.++||||++++-+|++.|++|+.++++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~ 34 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK 34 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 689999999999999999999999999988753
No 47
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.76 E-value=9.8e-05 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=30.1
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+++|+.+.||+|++++.+|+..|++|+.++++.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~ 33 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDP 33 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCC
Confidence 468999999999999999999999999988763
No 48
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.76 E-value=3.7e-05 Score=53.97 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCCC
Q 032016 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEM 117 (149)
Q Consensus 71 ~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~~ 117 (149)
.++.++++-+.-.+.+|..++||||..+++++++. ++++..+|+++.
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~ 54 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF 54 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC
Confidence 45667766666689999999999999999998763 578888988765
No 49
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.75 E-value=1.7e-05 Score=52.77 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=26.7
Q ss_pred CEEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
.|++|+.+|||+|++++..|++ ++ +.+..+|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~ 42 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN 42 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC
Confidence 4889999999999999999875 34 44456666544
No 50
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.68 E-value=5.7e-05 Score=54.75 Aligned_cols=48 Identities=29% Similarity=0.431 Sum_probs=33.5
Q ss_pred HHHH-HHHHHhcCCCEEEE-eeCCCccHHHHHHHHHhcC-----CCcEEEEeCCC
Q 032016 70 RLEE-SVKKTVSENPVVVY-SKTWCSYSSEVKLLFKRLG-----VEPLVIELDEM 117 (149)
Q Consensus 70 ~~~~-~v~~~i~~~~VvIF-sK~~CPfC~kak~lL~~~g-----i~y~~vdid~~ 117 (149)
++++ +.+++.+..++++| +.+|||+|+.++.+|++.. +.+..+|+|+.
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~ 64 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED 64 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC
Confidence 4445 44556566666666 6799999999999998643 45667777654
No 51
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.57 E-value=0.00011 Score=47.53 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=30.3
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|+.++||+|++++-+|...|++|+.++++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~ 34 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLA 34 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecc
Confidence 689999999999999999999999999888643
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.50 E-value=0.00029 Score=52.00 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~gi~y~~vdid~ 116 (149)
++.|+.+|||+|+++.-.|++ .++++..+|+|.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 778999999999997666654 557788888874
No 53
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.49 E-value=0.00023 Score=47.49 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=28.9
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+|+.++||||++++-+|+..|++|+.++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~ 31 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDP 31 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBT
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCc
Confidence 6899999999999999999999999999864
No 54
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.46 E-value=0.00026 Score=48.94 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=32.9
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
...+.+|+.+.||||++++-+|...|++|+.++++.
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~ 51 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININL 51 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCC
Confidence 446999999999999999999999999999988864
No 55
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.45 E-value=0.00026 Score=46.33 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=30.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+.+|+.+.||+|++++-+|...|++|+.++++..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~ 34 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLM 34 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCc
Confidence 3689999999999999999999999999988753
No 56
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.45 E-value=0.00048 Score=45.29 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEeCCC-------------CCeEeccchhHHHHHH
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIELDEM-------------GGKHIGGCTDTVKLYR 133 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdid~~-------------~G~~IGG~ddl~~l~~ 133 (149)
++||||.+++.+|+..|++|+.++++.. +|+.+.++..+.++.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 4899999999999999999999988643 3667777777666554
No 57
>PHA02125 thioredoxin-like protein
Probab=97.44 E-value=0.00017 Score=48.47 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=25.2
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
|++|+.+|||+|++++..|++. .+.++++|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~ 32 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDT 32 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeC
Confidence 7899999999999999999865 455555553
No 58
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.43 E-value=0.00019 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=28.3
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcC----CCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLG----VEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~g----i~y~~vdid~~ 117 (149)
++++|+|++|+.|..|+.+|.... ++++.+||+++
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d 39 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED 39 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC
Confidence 489999999999999999999754 45678999865
No 59
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.29 E-value=0.00044 Score=59.12 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=37.8
Q ss_pred HHHHHHhcCC--CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 73 ESVKKTVSEN--PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 73 ~~v~~~i~~~--~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
++....++.. ++++|-...||||-+++.+|+-.|++|.+++++..
T Consensus 78 e~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV 124 (370)
T KOG3029|consen 78 ETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV 124 (370)
T ss_pred HHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhcCCceEEEEecch
Confidence 3444445555 79999999999999999999999999999999754
No 60
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=7.6e-05 Score=54.55 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.4
Q ss_pred ccCCCCCccccccccchhc
Q 032016 35 NNYYTFSSRTSLSVNGRRR 53 (149)
Q Consensus 35 ~~~~~~~~~~~l~i~~~~~ 53 (149)
.-||+|||.||||||||..
T Consensus 64 k~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 64 KEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred HhhcCCCCCceeeECCEEe
Confidence 4699999999999999986
No 61
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.28 E-value=0.00046 Score=46.62 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=26.5
Q ss_pred EEEEeeCCCccHHHH----HHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~ka----k~lL~~~gi~y~~vdid~ 116 (149)
|.+|+ +|||.|+.+ +++++++|++++++++++
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~ 38 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD 38 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56676 999999999 567778899888888873
No 62
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.20 E-value=0.00079 Score=43.59 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+.+|..+.||+|++++-+|...|++|+.++++..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~ 34 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDIL 34 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCC
Confidence 3689999999999999999999999999988753
No 63
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=97.19 E-value=0.00064 Score=49.25 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=43.8
Q ss_pred EEEEeeCCCc------cHHHHHHHHHhcCCCcEEEEeCCC------------------------------CCeEeccchh
Q 032016 84 VVVYSKTWCS------YSSEVKLLFKRLGVEPLVIELDEM------------------------------GGKHIGGCTD 127 (149)
Q Consensus 84 VvIFsK~~CP------fC~kak~lL~~~gi~y~~vdid~~------------------------------~G~~IGG~dd 127 (149)
|.||..+.-+ .|.++..+|+..+|+|+.+||..+ +++++|++++
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 4556554332 466889999999999999999643 2899999999
Q ss_pred HHHHHHcCCcHHHHH
Q 032016 128 TVKLYRKGELEPLLS 142 (149)
Q Consensus 128 l~~l~~~GeL~~lL~ 142 (149)
+.++.++|+|.+.|+
T Consensus 83 f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 83 FEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHCTT-HHHHHT
T ss_pred HHHHHhhCHHHHHhC
Confidence 999999999999885
No 64
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.14 E-value=0.00061 Score=49.76 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=32.1
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
|.+|+.+.|.-|++|++.|++.|++|+++|+-+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 57999999999999999999999999999996653
No 65
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00085 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=32.7
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.|.||..|.|.-|++|++.|+++||+|+++|+-+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 37899999999999999999999999999999765
No 66
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.11 E-value=0.00083 Score=50.35 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.5
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.++||+.+.|.-|++|++.|++.|++|+++|+-+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 47899999999999999999999999999999665
No 67
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.11 E-value=0.0007 Score=49.27 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=31.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+.||+.+.|.-|++|++.|++.|++|+++|+-+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 5799999999999999999999999999998655
No 68
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.10 E-value=0.0027 Score=45.22 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=28.7
Q ss_pred CEEEEee--------CCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 83 PVVVYSK--------TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 83 ~VvIFsK--------~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.+.+|.| ..||||++++=.|.++|++|+.+++|.
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~ 46 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDM 46 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCC
Confidence 4556655 579999999999999999999998874
No 69
>PRK10853 putative reductase; Provisional
Probab=97.08 E-value=0.00076 Score=49.88 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=31.9
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
++||+.+.|.-|++|+++|++.|++|+++|+-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 6899999999999999999999999999998655
No 70
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.98 E-value=0.0033 Score=41.77 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=37.8
Q ss_pred EEEEeeC-------CCccHHHHHHHHHhcCCCcEEEEeCCC-------------CCeEeccchhHHHHHH
Q 032016 84 VVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDEM-------------GGKHIGGCTDTVKLYR 133 (149)
Q Consensus 84 VvIFsK~-------~CPfC~kak~lL~~~gi~y~~vdid~~-------------~G~~IGG~ddl~~l~~ 133 (149)
+++|..+ .||||.+++.+|+..|++|+.++++.. +|+.+.+...+.++.+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 4677776 579999999999999999998887632 3566666666655543
No 71
>PRK10026 arsenate reductase; Provisional
Probab=96.89 E-value=0.0017 Score=49.72 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
..+.||+.+.|.-|++|+++|++.|++|+++|+-+.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 358899999999999999999999999999998655
No 72
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00032 Score=57.64 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.2
Q ss_pred cccCCCCCccccccccchhcccCcee
Q 032016 34 ANNYYTFSSRTSLSVNGRRRRYGAVS 59 (149)
Q Consensus 34 ~~~~~~~~~~~~l~i~~~~~~~g~~~ 59 (149)
.+.||+|||+||||||||.. |+++
T Consensus 186 lK~fSdWPTfPQlyI~GEFi--GGlD 209 (227)
T KOG0911|consen 186 LKEFSDWPTFPQLYVKGEFI--GGLD 209 (227)
T ss_pred hhhhcCCCCccceeECCEec--cCcH
Confidence 46899999999999999986 4444
No 73
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.76 E-value=0.0018 Score=38.11 Aligned_cols=34 Identities=21% Similarity=0.616 Sum_probs=27.9
Q ss_pred EEEEeeCCCccHHHHHHHHH-----hcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFK-----RLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~-----~~gi~y~~vdid~~ 117 (149)
+++|..++|++|++++..++ ..++.+..++++..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED 39 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC
Confidence 47899999999999999999 45677777777654
No 74
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.76 E-value=0.0048 Score=40.52 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+.+|..+.||+|++++-+|...|++|+.+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~ 35 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLT 35 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCcc
Confidence 5799999999999999999999999999888754
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.75 E-value=0.0023 Score=50.97 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcC-----CCcEEEEeCCC
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELDEM 117 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~g-----i~y~~vdid~~ 117 (149)
+.++.++++-+.-.|++|+.+|||+|+.++.+++++- +.+..+|.+..
T Consensus 123 ~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 123 KTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN 175 (215)
T ss_pred HHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC
Confidence 3344444433333466799999999999999988642 44555666554
No 76
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=96.71 E-value=0.0029 Score=41.60 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+.+|+.+.||||.+++-+|...|++|+.++++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~ 33 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDL 33 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCc
Confidence 358999999999999999999999999887763
No 77
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.70 E-value=0.0032 Score=40.91 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=28.0
Q ss_pred EEEEeeCCCccHHHHHHHHHh-----cCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR-----LGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~-----~gi~y~~vdid~~ 117 (149)
+++|+.+||++|+++...|++ .++.+..+|.+..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~ 52 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN 52 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC
Confidence 678888999999999999987 5677777777653
No 78
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=96.68 E-value=0.005 Score=41.12 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=37.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCCeEeccchhHHHHHHcCCc
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGGKHIGGCTDTVKLYRKGEL 137 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G~~IGG~ddl~~l~~~GeL 137 (149)
+++|..+.||+|++++-+|.++|++|+.++++...|+. -.+++.++.-.|++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~--~~~~~~~inP~g~v 52 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH--NEPWFMRLNPTGEV 52 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc--CCHHHHHhCcCCCC
Confidence 46899999999999999999999999999887543322 12344444444443
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.54 E-value=0.0072 Score=44.08 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCC--EEEEeeCCCccHHHHHHHHHh------cCCCcEEEEeCCCC
Q 032016 71 LEESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR------LGVEPLVIELDEMG 118 (149)
Q Consensus 71 ~~~~v~~~i~~~~--VvIFsK~~CPfC~kak~lL~~------~gi~y~~vdid~~~ 118 (149)
.++.++...+.++ +|.|..+||++|++....+.+ ....|..++++.++
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~ 63 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE 63 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC
Confidence 4455555554443 456888999999999888766 33467778887653
No 80
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.50 E-value=0.0036 Score=43.62 Aligned_cols=28 Identities=11% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHhcCCC--EEEEeeCCCccHHHHHHHH
Q 032016 75 VKKTVSENP--VVVYSKTWCSYSSEVKLLF 102 (149)
Q Consensus 75 v~~~i~~~~--VvIFsK~~CPfC~kak~lL 102 (149)
+++.++.++ +|.|..+||++|++....+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~ 33 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVV 33 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHh
Confidence 344555555 5678889999999987544
No 81
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.49 E-value=0.0038 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=27.2
Q ss_pred EEEEeeCCCccHHHH----HHHHHhcCCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEV----KLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~ka----k~lL~~~gi~y~~vdid~~ 117 (149)
+++|..+|||||++. +++-+++|+++..|.+|..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 999999999999987 5666677887777777643
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.45 E-value=0.0062 Score=42.14 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=25.0
Q ss_pred EEEEeeCCCccHHHHHHHHHh----c--CCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----L--GVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~--gi~y~~vdid~~ 117 (149)
++.|..+||+.|+++...|++ + ++.+..+|+|+.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~ 56 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED 56 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC
Confidence 457788999999999998876 2 345566666654
No 83
>PRK10387 glutaredoxin 2; Provisional
Probab=96.33 E-value=0.011 Score=45.67 Aligned_cols=32 Identities=16% Similarity=0.398 Sum_probs=29.3
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+.+|+.+.||||.+++-+|+..|++|+.++++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~ 32 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLA 32 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcC
Confidence 36899999999999999999999999988875
No 84
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.27 E-value=0.0074 Score=44.66 Aligned_cols=34 Identities=12% Similarity=0.471 Sum_probs=25.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhc-----C-CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL-----G-VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~-----g-i~y~~vdid~~ 117 (149)
||-|+.+|||.|+.+...|+++ + +.+-.+|+|+.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~ 57 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV 57 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC
Confidence 4568899999999998888652 2 34567777765
No 85
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.22 E-value=0.012 Score=37.98 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.3
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG 118 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~ 118 (149)
.+|+.+.|++|.+++-+|...|++|+.+.++..+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~ 35 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLK 35 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCcc
Confidence 5888899999999999999999999998887543
No 86
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0068 Score=42.46 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
++|+...||.|..+++.|++.++.|++|||-.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~ 36 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITE 36 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhh
Confidence 79999999999999999999999999999854
No 87
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.20 E-value=0.013 Score=46.27 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=27.4
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+|....||||++++-+|..+|++|+.++++
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~ 31 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLL 31 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECC
Confidence 688899999999999999999999988764
No 88
>PTZ00051 thioredoxin; Provisional
Probab=96.10 E-value=0.016 Score=39.48 Aligned_cols=42 Identities=19% Similarity=0.487 Sum_probs=28.5
Q ss_pred HHHHhcCCC--EEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCC
Q 032016 75 VKKTVSENP--VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE 116 (149)
Q Consensus 75 v~~~i~~~~--VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~ 116 (149)
.+++++.++ ++.|..+||+.|++....|.+. ++.+-.+|.++
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~ 59 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE 59 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc
Confidence 344555544 4678889999999998888763 34555566554
No 89
>PHA02278 thioredoxin-like protein
Probab=96.10 E-value=0.017 Score=41.46 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=26.5
Q ss_pred cCCCE-EEEeeCCCccHHHHHHHHHhc------CCCcEEEEeCC
Q 032016 80 SENPV-VVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDE 116 (149)
Q Consensus 80 ~~~~V-vIFsK~~CPfC~kak~lL~~~------gi~y~~vdid~ 116 (149)
+..+| |-|..+||+.|+.+...|++. .+++..+|+|.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~ 56 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDA 56 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCc
Confidence 44554 556679999999998887653 24567788875
No 90
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.07 E-value=0.0041 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=16.5
Q ss_pred CCEEEEeeCCCccHHHHHHHHH
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~ 103 (149)
..|++|+.+|||||++..+.+.
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHH
Confidence 3478899999999999977765
No 91
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.07 E-value=0.0097 Score=38.88 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred EEEeeCCCccHHHHHHHHHh--cCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKR--LGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~--~gi~y~~vdid~ 116 (149)
.+|..+.||+|.+++-+|.. .|++|+.+.++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~ 35 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP 35 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc
Confidence 58999999999999999999 899999988863
No 92
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.04 E-value=0.0067 Score=43.60 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.2
Q ss_pred EeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 87 YSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 87 FsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
|+.+.|.-|++|++.|++.|++|+++|+-+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 7889999999999999999999999999765
No 93
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.98 E-value=0.014 Score=40.23 Aligned_cols=41 Identities=7% Similarity=0.369 Sum_probs=28.6
Q ss_pred HHhcCCCEEEEeeCCCccHHHHHHHHHhc-------CCCcEEEEeCCC
Q 032016 77 KTVSENPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEM 117 (149)
Q Consensus 77 ~~i~~~~VvIFsK~~CPfC~kak~lL~~~-------gi~y~~vdid~~ 117 (149)
++++...++.|..+|||+|++....|++. ++.+..+|.++.
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 34555678899999999999988887653 244455565543
No 94
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.77 E-value=0.019 Score=40.37 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=23.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~ 116 (149)
|+-|..+||+.|++....|+++ ++.+-.+|+|+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~ 56 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE 56 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC
Confidence 5677779999999888887652 34455566654
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.74 E-value=0.012 Score=52.64 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=40.3
Q ss_pred ccCccchHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcC-----CCcEEEEeC
Q 032016 63 MASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLG-----VEPLVIELD 115 (149)
Q Consensus 63 ~~s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~g-----i~y~~vdid 115 (149)
..+...++..++++++-++-.|.+|.+++||||.++++.+.+.. |..+.+|..
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~ 156 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA 156 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch
Confidence 33455677888888877778899999999999999999987643 444555543
No 96
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.74 E-value=0.017 Score=38.93 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
++||||++++-+|...|++|+.++++.
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~ 40 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEF 40 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecC
Confidence 689999999999999999999887763
No 97
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.74 E-value=0.021 Score=46.23 Aligned_cols=47 Identities=13% Similarity=0.407 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHH----hcCCCcEEEEeCC
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDE 116 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~----~~gi~y~~vdid~ 116 (149)
..++.|+++-+..-+++|.++.||||++...+|+ ++|++...|.+|.
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG 160 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDG 160 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 4556777777888899999999999998777765 5888888888763
No 98
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.69 E-value=0.014 Score=41.96 Aligned_cols=29 Identities=17% Similarity=0.590 Sum_probs=20.1
Q ss_pred HHHHHhcCC--C-EEEEeeCCCccHHHHHHHH
Q 032016 74 SVKKTVSEN--P-VVVYSKTWCSYSSEVKLLF 102 (149)
Q Consensus 74 ~v~~~i~~~--~-VvIFsK~~CPfC~kak~lL 102 (149)
.+++.++.+ + ++.|+.+|||+|++....+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 344555555 3 5678889999999987544
No 99
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.67 E-value=0.0088 Score=53.50 Aligned_cols=45 Identities=7% Similarity=0.183 Sum_probs=36.3
Q ss_pred ccCccchHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCC
Q 032016 63 MASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107 (149)
Q Consensus 63 ~~s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi 107 (149)
..+...++..++++++-++..|.+|.++.||||.++++.+.++.+
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~ 144 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL 144 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 334555778888888777778999999999999999999887543
No 100
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.59 E-value=0.016 Score=46.06 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=29.8
Q ss_pred HHHHhcCCCEEEEee---CCCccHHHHHHHHHhc-----CCCcEEEEeC
Q 032016 75 VKKTVSENPVVVYSK---TWCSYSSEVKLLFKRL-----GVEPLVIELD 115 (149)
Q Consensus 75 v~~~i~~~~VvIFsK---~~CPfC~kak~lL~~~-----gi~y~~vdid 115 (149)
.+.+-+.-.+++|.. +|||+|+.+..+|++. ++++..+++|
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd 62 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFD 62 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecC
Confidence 444444556888988 9999999999998764 2445577776
No 101
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.55 E-value=0.018 Score=38.91 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=24.2
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
|+.|..+||++|+..+..|.+ ++ +.+-.+|.++.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 60 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN 60 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhcc
Confidence 667888999999999988864 33 44455555543
No 102
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=95.54 E-value=0.039 Score=36.33 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=31.3
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGG 119 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G 119 (149)
+.+|+.+.+++|+++.-+|...|++|+.+.++..++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~ 36 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG 36 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC
Confidence 358999999999999999999999999988875443
No 103
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.47 E-value=0.05 Score=39.25 Aligned_cols=37 Identities=5% Similarity=0.002 Sum_probs=26.1
Q ss_pred CCCE-EEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCCC
Q 032016 81 ENPV-VVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDEM 117 (149)
Q Consensus 81 ~~~V-vIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~~ 117 (149)
..+| +.|..+||+.|+.+...|+++ ++.+..+|+++.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~ 64 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA 64 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC
Confidence 3454 566779999999999888652 455666776654
No 104
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.38 E-value=0.014 Score=47.52 Aligned_cols=33 Identities=15% Similarity=0.401 Sum_probs=25.4
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc---CCCcEEEEeC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL---GVEPLVIELD 115 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~---gi~y~~vdid 115 (149)
.|++|+-+.||||+++.+.+.++ ||.+.++.+.
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 48899999999999999988774 4555555443
No 105
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.36 E-value=0.025 Score=44.36 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.8
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
..+.+|+.+.||+|.+++=+|.+.|++|+.+.++.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~ 43 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK 43 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc
Confidence 35789999999999999999999999999988873
No 106
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.31 E-value=0.036 Score=46.25 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCEEEEeeCCCccHHHHHHHHH----hcCCCcEEEEeCC
Q 032016 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDE 116 (149)
Q Consensus 73 ~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~----~~gi~y~~vdid~ 116 (149)
..++++....-++.|..+|||+|++....|+ ++|+.+..|++|.
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~ 206 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDG 206 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCC
Confidence 3455555555567788899999998877765 4677666677764
No 107
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.21 E-value=0.043 Score=38.83 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=24.7
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhc-------CCCcEEEEeCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDE 116 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~-------gi~y~~vdid~ 116 (149)
.-++.|..+|||+|++....|++. ++.+-.+|.|.
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 346788889999999999887652 23344556554
No 108
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.029 Score=45.33 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=37.1
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC--------------------CCeEeccchhHHHHH
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM--------------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~--------------------~G~~IGG~ddl~~l~ 132 (149)
-+|..+-||||.+|+-++--.+|+++.+-++.+ +|.+.+-.-|+..+.
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHH
Confidence 378889999999999999999999876555332 377777777776665
No 109
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.17 E-value=0.039 Score=49.95 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=40.8
Q ss_pred CccchHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHh----c-CCCcEEEEeCCC
Q 032016 65 SSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR----L-GVEPLVIELDEM 117 (149)
Q Consensus 65 s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~----~-gi~y~~vdid~~ 117 (149)
+...++..++|+++=++-.|.+|..++||||.++.+.+++ . +|+.+.+|....
T Consensus 461 ~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 461 QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 3455677777777666667899999999999999887764 3 688888887654
No 110
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=95.15 E-value=0.042 Score=35.75 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=29.2
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
++|..+.|++|++++-+|...|++|+.+.++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~ 33 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITY 33 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCH
Confidence 68888999999999999999999999988764
No 111
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.10 E-value=0.048 Score=35.88 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEe
Q 032016 91 WCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 91 ~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
+||||+|+.=+|+.+|++|+...+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v 24 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVV 24 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEE
T ss_pred CchHhHHHHHHHHHhCCCCEEEEE
Confidence 599999999999999999987666
No 112
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.99 E-value=0.043 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.766 Sum_probs=17.7
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||++|++....+++
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~ 42 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEE 42 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHH
Confidence 567888999999999988863
No 113
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=94.97 E-value=0.041 Score=36.33 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.7
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|+.+.||+|.+++-+|...|++|+.++++..
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~ 34 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPG 34 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccc
Confidence 478899999999999999999999999888753
No 114
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.089 Score=39.82 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCCCEEEEee---------CCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 69 SRLEESVKKTVSENPVVVYSK---------TWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK---------~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
+++++.++..-+...+.+|.. ||||+|.+|.-.+.+ .+ +.+..+++...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 566777777766666655543 899999998877653 32 33455666543
No 115
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=94.92 E-value=0.1 Score=42.79 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.9
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEeCCC--------------------CCeEeccchhHHHHHH
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIELDEM--------------------GGKHIGGCTDTVKLYR 133 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdid~~--------------------~G~~IGG~ddl~~l~~ 133 (149)
..||||++++-.|...|++|+++++|.. +|..+.....+.++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 5799999999999999999999888742 2566666666666654
No 116
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=94.92 E-value=0.064 Score=35.36 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
++.+|..+.|++|++++-+|...|++|+.+.++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~ 33 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVT 33 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEec
Confidence 467888899999999999999999999988875
No 117
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=94.92 E-value=0.058 Score=35.91 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=28.4
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+.+|..+. |+|++++-+|+..|++|+.+.++.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecC
Confidence 57898886 999999999999999999888763
No 118
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.87 E-value=0.044 Score=36.26 Aligned_cols=29 Identities=14% Similarity=0.476 Sum_probs=21.5
Q ss_pred HHHhcCC--CEEEEeeCCCccHHHHHHHHHh
Q 032016 76 KKTVSEN--PVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 76 ~~~i~~~--~VvIFsK~~CPfC~kak~lL~~ 104 (149)
.+.+.+. -+++|..+||++|+++...+++
T Consensus 9 ~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~ 39 (101)
T cd02961 9 DELVKDSKDVLVEFYAPWCGHCKALAPEYEK 39 (101)
T ss_pred HHHHhCCCcEEEEEECCCCHHHHhhhHHHHH
Confidence 3444443 4678888999999999888865
No 119
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.77 E-value=0.051 Score=38.05 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=22.6
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cC---CCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LG---VEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~g---i~y~~vdid 115 (149)
++.|..+|||.|++....|+. ++ +.+..+|+|
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 467788999999998888764 32 234455655
No 120
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=94.77 E-value=0.05 Score=40.37 Aligned_cols=33 Identities=6% Similarity=0.361 Sum_probs=22.9
Q ss_pred EEEEee-------CCCccHHHHHHHHHh----cC--CCcEEEEeCC
Q 032016 84 VVVYSK-------TWCSYSSEVKLLFKR----LG--VEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK-------~~CPfC~kak~lL~~----~g--i~y~~vdid~ 116 (149)
||.|.. +|||.|+.+.-.|++ +. +.+-.+|+|+
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 566777 899999988766643 43 5556667654
No 121
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.68 E-value=0.032 Score=43.58 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=25.4
Q ss_pred CCEEEEeeCCCccHHHHHHHHHh--cCCCcEEEEe
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKR--LGVEPLVIEL 114 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~--~gi~y~~vdi 114 (149)
..|++|+-+.||||+++.+.+.+ .++.+.++-+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 45889999999999999999984 3555555544
No 122
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.55 E-value=0.06 Score=40.75 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCC--EEEEeeCCCccHHHHHHHH
Q 032016 70 RLEESVKKTVSENP--VVVYSKTWCSYSSEVKLLF 102 (149)
Q Consensus 70 ~~~~~v~~~i~~~~--VvIFsK~~CPfC~kak~lL 102 (149)
+.++.++...+.++ ++.|..+|||+|++.++..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 45555666665554 4567789999999888763
No 123
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.55 E-value=0.072 Score=40.96 Aligned_cols=38 Identities=18% Similarity=0.471 Sum_probs=28.6
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHH----hcCCCcEEEEeCCC
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELDEM 117 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~----~~gi~y~~vdid~~ 117 (149)
....++.|..+|||+|++..-.|+ ++|+.+..+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 455689999999999998777765 45666666777653
No 124
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=94.50 E-value=0.046 Score=37.27 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=16.5
Q ss_pred EEEEeeCCCccHHHHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~ 103 (149)
++.|..+|||+|++....+.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~ 40 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFT 40 (104)
T ss_pred EEEEECCCCHHHHHhCHHHH
Confidence 67888899999998876654
No 125
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.49 E-value=0.034 Score=38.79 Aligned_cols=28 Identities=14% Similarity=0.472 Sum_probs=19.3
Q ss_pred HHhcCCC-EEEEeeCCCccHHHHHHHHHh
Q 032016 77 KTVSENP-VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 77 ~~i~~~~-VvIFsK~~CPfC~kak~lL~~ 104 (149)
+..+... ++.|..+|||+|++....|++
T Consensus 11 ~~~~~~~vlv~f~a~wC~~C~~~~p~l~~ 39 (104)
T cd03000 11 DVRKEDIWLVDFYAPWCGHCKKLEPVWNE 39 (104)
T ss_pred hhccCCeEEEEEECCCCHHHHhhChHHHH
Confidence 3344344 456777999999987776654
No 126
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.48 E-value=0.034 Score=37.52 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCC--EEEEeeCCCccHHHHHHHHHh-------cCCCcEEEEeCC
Q 032016 72 EESVKKTVSENP--VVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDE 116 (149)
Q Consensus 72 ~~~v~~~i~~~~--VvIFsK~~CPfC~kak~lL~~-------~gi~y~~vdid~ 116 (149)
++-+++..+.++ +|.|+.+||++|++.++.+-+ +.-.|..+.+|.
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~ 60 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDV 60 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEc
Confidence 334444444433 567888999999988877522 233466666553
No 127
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.48 E-value=0.12 Score=36.74 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=24.3
Q ss_pred EEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~ 116 (149)
|+.|..+||+.|+.+...|+++ ++.|-.+|+++
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~ 65 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK 65 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh
Confidence 4568889999999998888752 35556666664
No 128
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=94.44 E-value=0.076 Score=39.86 Aligned_cols=33 Identities=21% Similarity=0.556 Sum_probs=23.6
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~ 116 (149)
|+.|..+||++|++....|.+ ++ +.+..+++|.
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 456777999999998888764 22 4556667764
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.39 E-value=0.086 Score=44.09 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHH----HhcCCCcEEEEeCC
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLF----KRLGVEPLVIELDE 116 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL----~~~gi~y~~vdid~ 116 (149)
+.++.|+++-+..-+++|.++.||||++.--+| +++|++...|.+|.
T Consensus 140 ~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG 190 (256)
T TIGR02739 140 QKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDG 190 (256)
T ss_pred HHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 455677788888899999999999999876666 46898888888763
No 130
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.36 E-value=0.051 Score=36.81 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||+.|+++...|++
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~ 38 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEE 38 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHH
Confidence 568888999999999888875
No 131
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.31 E-value=0.052 Score=36.90 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.5
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||+.|++....|.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~ 36 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLER 36 (96)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 567777999999999888765
No 132
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.30 E-value=0.1 Score=43.43 Aligned_cols=45 Identities=7% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHH----hcCCCcEEEEeC
Q 032016 71 LEESVKKTVSENPVVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELD 115 (149)
Q Consensus 71 ~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~----~~gi~y~~vdid 115 (149)
.++.|+++-+..-++.|.++.||||++.--+|+ ++|++...|.+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~D 182 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVD 182 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 445677778889999999999999998766654 588887777776
No 133
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.29 E-value=0.039 Score=45.49 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.5
Q ss_pred CEEEEeeCCCccHHHHHHHHHh---cC-CCcEEEEe
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR---LG-VEPLVIEL 114 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~---~g-i~y~~vdi 114 (149)
.|++|+-+.||||++..+-+.. .| |.+.++.+
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3789999999999999777653 23 66555543
No 134
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.28 E-value=0.092 Score=35.16 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=23.8
Q ss_pred CEEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
-++.|..+||++|+++...|++ ++ +.+-.+|.+..
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 57 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC
Confidence 3567777999999999887765 22 44555665543
No 135
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.27 E-value=0.12 Score=38.41 Aligned_cols=34 Identities=6% Similarity=0.229 Sum_probs=25.6
Q ss_pred EEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
|+=|+.+|||-|+..-.+|.++- +.+-.+|+|+.
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev 57 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV 57 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc
Confidence 45688899999999988887632 34556777764
No 136
>PRK15113 glutathione S-transferase; Provisional
Probab=94.25 E-value=0.1 Score=41.01 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCCEEEEeeC--CCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 81 ENPVVVYSKT--WCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 81 ~~~VvIFsK~--~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
...+++|+.+ .||||++++-+|.+.|++|+.+.++-
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~ 40 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDL 40 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCC
Confidence 3457899975 79999999999999999999888864
No 137
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.23 E-value=0.05 Score=36.97 Aligned_cols=21 Identities=14% Similarity=0.580 Sum_probs=17.8
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||++|++....+++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~ 42 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEK 42 (105)
T ss_pred EEEEECCCCHHHHhhChHHHH
Confidence 678888999999988887754
No 138
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.09 E-value=0.093 Score=40.38 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=24.7
Q ss_pred EEEEeeCCCccHHHHHHHHHh----c---CCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----L---GVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~---gi~y~~vdid~~ 117 (149)
|+.|..+|||.|++....|++ + ++.+-.+|+|+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~ 91 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF 91 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence 778888999999999887754 2 244556666554
No 139
>PRK09381 trxA thioredoxin; Provisional
Probab=94.07 E-value=0.11 Score=36.30 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=23.9
Q ss_pred CEEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
-++.|..+|||.|+.....|++ ++ +.+..+|.+..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~ 64 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC
Confidence 3567888999999999877764 32 34455666543
No 140
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=94.02 E-value=0.18 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=29.3
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.+|..+.+|+|++++-+|...|++|+.++++.
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~ 33 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGG 33 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecc
Confidence 58899999999999999999999999988864
No 141
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.13 Score=37.36 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=24.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCC-----CcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGV-----EPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi-----~y~~vdid~ 116 (149)
|+-|+.+|||-|+.+.-++.++-. .|-.+|+|+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde 62 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE 62 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc
Confidence 344777999999999988877443 345677775
No 142
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.87 E-value=0.09 Score=41.09 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CEE-EEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCC
Q 032016 83 PVV-VYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE 116 (149)
Q Consensus 83 ~Vv-IFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~ 116 (149)
+|| -|..+|||.|+.+...|+.+ .+.|-.+|+++
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~ 124 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA 124 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 454 56779999999888877652 34455666664
No 143
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.86 E-value=0.055 Score=37.38 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=23.9
Q ss_pred EEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
++.|..+||++|++....+++.. +.+-.+|.++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~ 61 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc
Confidence 56788899999999988876522 23445666653
No 144
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.18 Score=41.67 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
..|.+|+.-.|||.+|++=.|+..||+|+++++|-.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~ 43 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT 43 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC
Confidence 569999999999999999999999999999998754
No 145
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.64 E-value=0.08 Score=37.25 Aligned_cols=21 Identities=24% Similarity=0.795 Sum_probs=17.9
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
+|.|..+||++|++....|++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~ 42 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNA 42 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHH
Confidence 567888999999999888865
No 146
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.59 E-value=0.07 Score=36.03 Aligned_cols=21 Identities=14% Similarity=0.580 Sum_probs=17.6
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
+++|..+||+.|++....|++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~ 37 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEK 37 (102)
T ss_pred EEEEECCCCHHHHhhChHHHH
Confidence 788999999999987776654
No 147
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=93.54 E-value=0.066 Score=37.04 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=23.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc----C--CCcEEEEeCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL----G--VEPLVIELDE 116 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~----g--i~y~~vdid~ 116 (149)
-++.|..+||++|++....|++. . +.+-.+|.+.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 36788889999999987777653 2 3344456655
No 148
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=93.41 E-value=0.084 Score=38.53 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=26.6
Q ss_pred hcCCC--EEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 79 VSENP--VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 79 i~~~~--VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
++.++ +|.|..+||++|+++...|++.. +.+-.+|.|+.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~ 72 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP 72 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC
Confidence 44444 56888899999999988887642 33345565543
No 149
>PRK10996 thioredoxin 2; Provisional
Probab=93.40 E-value=0.22 Score=37.14 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||++|++....|.+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~ 76 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFED 76 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 567888999999998777764
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.39 E-value=0.081 Score=39.58 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHh----c-CCCcEEEEeC
Q 032016 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR----L-GVEPLVIELD 115 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~----~-gi~y~~vdid 115 (149)
++..++++...+...+++|+-+|||+|++..-.|.+ . ++++.++-.|
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd 81 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD 81 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 456667778878889999999999999977666543 4 5556655544
No 151
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=93.29 E-value=0.12 Score=36.77 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=23.4
Q ss_pred EEEEeeCCCccHHHHHHHHHh----c---CCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----L---GVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~---gi~y~~vdid~~ 117 (149)
+|.|..+||+.|++....+++ + ++.+..+|++..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 566777999999988766543 2 455566776653
No 152
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=93.24 E-value=0.31 Score=40.49 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.-++..++.-... ++ ....||||+++.-+|++.|++|+.+.++.
T Consensus 54 ~~~~~~~~~~~~~-~~---~~g~cp~s~rV~i~L~ekgi~ye~~~vdl 97 (265)
T PLN02817 54 SPLEVCVKASLTV-PN---KLGDCPFCQRVLLTLEEKHLPYDMKLVDL 97 (265)
T ss_pred ccHHHHHhcccCC-CC---cCCCCcHHHHHHHHHHHcCCCCEEEEeCc
Confidence 3456666654422 22 23459999999999999999999877763
No 153
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.11 Score=44.52 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCCEE-EEeeCCCccHHHHHHHHHhcCC----Cc--EEEEeCCC
Q 032016 69 SRLEESVKKTVSENPVV-VYSKTWCSYSSEVKLLFKRLGV----EP--LVIELDEM 117 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~Vv-IFsK~~CPfC~kak~lL~~~gi----~y--~~vdid~~ 117 (149)
...++.|.+.-...||+ .|..|||+.|++....|++.-. .| -.+|+|..
T Consensus 31 anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~ 86 (304)
T COG3118 31 ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE 86 (304)
T ss_pred hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc
Confidence 45677777777776765 5556999999999999986432 33 46777765
No 154
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.05 E-value=0.19 Score=39.99 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=28.7
Q ss_pred HHHHHHHhcCC---CE-EEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeC
Q 032016 72 EESVKKTVSEN---PV-VVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELD 115 (149)
Q Consensus 72 ~~~v~~~i~~~---~V-vIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid 115 (149)
.++.+++.+.. .| |-|..+||+.|+.+...|+++ .+.|..++++
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad 142 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST 142 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH
Confidence 45555555443 34 457789999999999888763 2445555554
No 155
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.01 E-value=0.14 Score=39.28 Aligned_cols=34 Identities=9% Similarity=0.357 Sum_probs=25.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
|+-|+.+|||.|+..-.+|++.- +.+-.+|+|+.
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~ 66 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV 66 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC
Confidence 56789999999999988887632 23356788774
No 156
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.98 E-value=0.17 Score=34.41 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=17.6
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||+.|++....|.+
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~ 42 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKK 42 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHH
Confidence 567888999999999887765
No 157
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=92.92 E-value=0.28 Score=36.46 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHHhcCC-CEE-EEeeCCCccHHHHHH
Q 032016 76 KKTVSEN-PVV-VYSKTWCSYSSEVKL 100 (149)
Q Consensus 76 ~~~i~~~-~Vv-IFsK~~CPfC~kak~ 100 (149)
++..+.+ +|+ .|+.+||++|++..+
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEH 35 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHH
Confidence 3444444 454 477799999998865
No 158
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.80 E-value=0.13 Score=34.45 Aligned_cols=31 Identities=32% Similarity=0.710 Sum_probs=23.1
Q ss_pred EEEEeeCCCccHHHHHHHHH----hcCCCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFK----RLGVEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~----~~gi~y~~vdid 115 (149)
|.+| .++||+|.++.++++ +.|++++.+|+.
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~ 37 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE 37 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 5564 566999998888665 578888888873
No 159
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.75 E-value=0.1 Score=36.01 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=23.7
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cC--CCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LG--VEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~g--i~y~~vdid~~ 117 (149)
++.|..+||+.|++....+++ ++ +.+-.+|.++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 62 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY 62 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch
Confidence 567888999999998877764 22 44455666543
No 160
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.62 E-value=0.17 Score=37.71 Aligned_cols=35 Identities=14% Similarity=0.520 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcC-CCEE-EEee-------CCCccHHHHHHHHHh
Q 032016 70 RLEESVKKTVSE-NPVV-VYSK-------TWCSYSSEVKLLFKR 104 (149)
Q Consensus 70 ~~~~~v~~~i~~-~~Vv-IFsK-------~~CPfC~kak~lL~~ 104 (149)
+..+.+++.-+. .++. +|+- +|||+|++|.-.+++
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~ 50 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEK 50 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHH
Confidence 455566664433 4444 4432 799999999866543
No 161
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=92.61 E-value=0.15 Score=34.56 Aligned_cols=21 Identities=14% Similarity=0.618 Sum_probs=17.7
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||++|++....|++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHH
Confidence 567888999999998887765
No 162
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.58 E-value=0.14 Score=34.71 Aligned_cols=22 Identities=14% Similarity=0.475 Sum_probs=17.3
Q ss_pred CEEEEeeCCCccHHHHHHHHHh
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~ 104 (149)
-++.|..+||+.|++....|++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~ 40 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQ 40 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHH
Confidence 3567888999999988777654
No 163
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.48 E-value=0.16 Score=38.24 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=27.8
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
..+++|+||.|+-|+-+.++|.++.=+|+.+-|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 357899999999999999999888777776544
No 164
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.44 Score=37.06 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=32.4
Q ss_pred HHHHHHHHhcC-CC-EEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 71 LEESVKKTVSE-NP-VVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 71 ~~~~v~~~i~~-~~-VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
..++-+..++. .| +|-|..+||.-|+.+.-.|+++- +.+-.+|+|++
T Consensus 50 ~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 50 DSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH 104 (150)
T ss_pred HHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc
Confidence 34455555544 45 57899999999999999888743 33456777765
No 165
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=91.69 E-value=0.53 Score=31.56 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEeCC-------------CCCeEeccchhHHHHHH
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIELDE-------------MGGKHIGGCTDTVKLYR 133 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdid~-------------~~G~~IGG~ddl~~l~~ 133 (149)
+.+|||-++..+|+-.|++|+++.... ++|+.|+|.+.+.+..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEECCEEecChHHHHHHHH
Confidence 458999999999999999998764321 14889999988888764
No 166
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.67 E-value=0.094 Score=37.86 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=19.2
Q ss_pred CCEEEEeeCCCccHHHHHHHHHh
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
..|++|+-++||||++....+.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 45789999999999988777665
No 167
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=91.06 E-value=0.2 Score=34.81 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=16.8
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
|+.|..+|||+|++....|++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEEEECCCCcchHhHhHHHHH
Confidence 566777999999988777765
No 168
>PLN02378 glutathione S-transferase DHAR1
Probab=91.03 E-value=0.27 Score=38.70 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
..||||+++.=+|+..|++|+.+.+|-
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~ 44 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINL 44 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCc
Confidence 459999999999999999999888864
No 169
>PLN02473 glutathione S-transferase
Probab=90.86 E-value=0.47 Score=36.82 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=28.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+.+|+.+.||+|++++=+|.++|++|+.+.++
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~ 34 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVD 34 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEec
Confidence 46899999999999999999999999988765
No 170
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=90.76 E-value=0.52 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|..+.| .|.+++-+|...|++|+.++++..
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~ 33 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLR 33 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecc
Confidence 57888776 488999999999999998887654
No 171
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.08 E-value=0.24 Score=32.45 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhc
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~ 105 (149)
|++|.-+.||||..+...|++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999999999875
No 172
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=89.91 E-value=0.42 Score=34.34 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=15.1
Q ss_pred EEEEeeCCCccHHHHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~ 103 (149)
++.|..+|||.|++....|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 45666799999998766654
No 173
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=89.83 E-value=0.53 Score=42.54 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=24.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhc-------CCCcEEEEeCCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELDEM 117 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~-------gi~y~~vdid~~ 117 (149)
+|.|..+|||+|+.....|++. ++.+-.+|+|.+
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 5678889999999998887652 244555666643
No 174
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=89.78 E-value=0.59 Score=35.78 Aligned_cols=26 Identities=4% Similarity=0.055 Sum_probs=18.4
Q ss_pred hcCCCEE-EEeeCCCccHHHHHHHHHh
Q 032016 79 VSENPVV-VYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 79 i~~~~Vv-IFsK~~CPfC~kak~lL~~ 104 (149)
.+...|+ -|..+|||.|++..-.|.+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHH
Confidence 3444444 5566999999998877755
No 175
>PTZ00062 glutaredoxin; Provisional
Probab=89.62 E-value=0.72 Score=37.23 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=22.4
Q ss_pred HHHHHhc--CCCEEE-EeeCCCccHHHHHHHHHhc
Q 032016 74 SVKKTVS--ENPVVV-YSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 74 ~v~~~i~--~~~VvI-FsK~~CPfC~kak~lL~~~ 105 (149)
...++++ ...+|+ |..+|||.|+.+...|.++
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l 42 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNAL 42 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHH
Confidence 3445555 344554 4579999999999998864
No 176
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.36 E-value=0.43 Score=34.29 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||+.|+.....+++
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~ 43 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKK 43 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHH
Confidence 566778999999988888765
No 177
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=89.30 E-value=0.78 Score=33.76 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=25.1
Q ss_pred CCCEEEEeeCC--CccHHHHHHHHHhcC------CCcEEEEeCCC
Q 032016 81 ENPVVVYSKTW--CSYSSEVKLLFKRLG------VEPLVIELDEM 117 (149)
Q Consensus 81 ~~~VvIFsK~~--CPfC~kak~lL~~~g------i~y~~vdid~~ 117 (149)
...|+.|..+| ||.|+.+.-+|+++- +.+-.+|+|+.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 33466777785 999999998887532 23446676654
No 178
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=89.29 E-value=0.54 Score=36.47 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEeeCCCccHHHHHHHHHh---cCCCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR---LGVEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~---~gi~y~~vdid 115 (149)
|+.|..+|||+|++....|.+ .|+.+-.++++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~ 106 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK 106 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 556777999999987666654 35554445443
No 179
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=88.72 E-value=0.33 Score=31.57 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=14.9
Q ss_pred eeCCCccHHHHHHHHHh
Q 032016 88 SKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 88 sK~~CPfC~kak~lL~~ 104 (149)
..+|||+|++....|.+
T Consensus 40 ~~~~C~~C~~~~~~l~~ 56 (127)
T COG0526 40 WAPWCPPCRAEAPLLEE 56 (127)
T ss_pred EcCcCHHHHhhchhHHH
Confidence 59999999999888765
No 180
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=88.69 E-value=0.64 Score=35.54 Aligned_cols=31 Identities=13% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEeeCCCccHHHHHHHHHhc---CCCcEEEEe
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL---GVEPLVIEL 114 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~---gi~y~~vdi 114 (149)
++.|..+|||.|++....|++. |+.+-.+++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~ 100 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDY 100 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 5567779999999876666543 444434443
No 181
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=88.39 E-value=1.3 Score=34.58 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=27.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+.+|..+ +|+|++++=+|.+.|++|+.++++-
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~ 33 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDL 33 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecC
Confidence 4678776 6999999999999999999888764
No 182
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.36 E-value=0.69 Score=30.41 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=25.6
Q ss_pred eCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 89 KTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 89 K~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
...||+|++++=+|...|++|+.+.++..
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~ 35 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLY 35 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 46899999999999999999999888643
No 183
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.21 E-value=0.46 Score=35.47 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHh
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
...|+.|+-..||||++....+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 456889999999999988877754
No 184
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=88.19 E-value=0.4 Score=31.98 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.5
Q ss_pred CCEEEEeeCCCccHHHHHHHHHh
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
.-++.|..+|||+|++....|.+
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHH
Confidence 34677778999999977766654
No 185
>PLN02309 5'-adenylylsulfate reductase
Probab=88.15 E-value=0.7 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=24.1
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc-------CCCcEEEEeC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL-------GVEPLVIELD 115 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~-------gi~y~~vdid 115 (149)
-+|.|..+||++|+++...|+++ ++.+-.+|.|
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 36788889999999988887653 2444556665
No 186
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=88.09 E-value=0.77 Score=33.26 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=15.2
Q ss_pred EEEEeeCCCccHHHHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~ 103 (149)
++.|..+|||.|++....|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677799999998766554
No 187
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=87.70 E-value=1.3 Score=31.88 Aligned_cols=26 Identities=27% Similarity=0.444 Sum_probs=15.8
Q ss_pred HhcCCC-EEEEe-eCCCccHHHHHHHHH
Q 032016 78 TVSENP-VVVYS-KTWCSYSSEVKLLFK 103 (149)
Q Consensus 78 ~i~~~~-VvIFs-K~~CPfC~kak~lL~ 103 (149)
.....+ |++|. .+|||+|++-...|.
T Consensus 20 ~~~~~~~vl~f~~~~~Cp~C~~~~~~l~ 47 (149)
T cd02970 20 LLGEGPVVVVFYRGFGCPFCREYLRALS 47 (149)
T ss_pred HhcCCCEEEEEECCCCChhHHHHHHHHH
Confidence 333344 45554 589999997554444
No 188
>PRK11752 putative S-transferase; Provisional
Probab=87.64 E-value=1.3 Score=36.37 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.2
Q ss_pred HhcCCCEEEEeeCCCccHHHHHHHHHhc------CCCcEEEEeCC
Q 032016 78 TVSENPVVVYSKTWCSYSSEVKLLFKRL------GVEPLVIELDE 116 (149)
Q Consensus 78 ~i~~~~VvIFsK~~CPfC~kak~lL~~~------gi~y~~vdid~ 116 (149)
....+++.+|+.+ ||+|++++=+|+++ |++|+.+.++-
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~ 82 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRI 82 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecC
Confidence 4566789999964 99999999999986 88898877653
No 189
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=87.55 E-value=1.3 Score=40.63 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCC-CE-EEEeeCCCccHHHHHHH
Q 032016 69 SRLEESVKKTVSEN-PV-VVYSKTWCSYSSEVKLL 101 (149)
Q Consensus 69 ~~~~~~v~~~i~~~-~V-vIFsK~~CPfC~kak~l 101 (149)
++.++.+++..+++ +| +-|+.+||+.|++.+..
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~ 495 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKY 495 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHH
Confidence 56667776665543 44 45788999999987654
No 190
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=87.43 E-value=0.55 Score=33.46 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.2
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~ 105 (149)
-|+.|..+|||.|++....|.++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHH
Confidence 36777889999999887777653
No 191
>PRK10357 putative glutathione S-transferase; Provisional
Probab=87.32 E-value=0.79 Score=35.21 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=28.8
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.+|+.+.||++++++=+|...|++|+.++++.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~ 33 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELP 33 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCC
Confidence 57889999999999999999999999887764
No 192
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=0.91 Score=35.23 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.8
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|..+.+|||.++.=.|.++|++|+.+.++..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~ 34 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLD 34 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcc
Confidence 578888889999999999999999998877643
No 193
>PTZ00056 glutathione peroxidase; Provisional
Probab=86.44 E-value=1.3 Score=35.09 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=12.0
Q ss_pred EEEEeeCCCccHHHHH
Q 032016 84 VVVYSKTWCSYSSEVK 99 (149)
Q Consensus 84 VvIFsK~~CPfC~kak 99 (149)
++.|..+|||+|++-.
T Consensus 43 lv~fwAswC~~C~~e~ 58 (199)
T PTZ00056 43 MITNSASKCGLTKKHV 58 (199)
T ss_pred EEEEECCCCCChHHHH
Confidence 4567779999998633
No 194
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.42 E-value=0.62 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=18.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHh
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~ 104 (149)
-++.|..+|||+|++....+++
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~ 76 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWER 76 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4678888999999999888765
No 195
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=86.29 E-value=1 Score=38.50 Aligned_cols=28 Identities=11% Similarity=0.430 Sum_probs=19.9
Q ss_pred HHHhcCCC--EEEEeeCCCccHHHHHHHHH
Q 032016 76 KKTVSENP--VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 76 ~~~i~~~~--VvIFsK~~CPfC~kak~lL~ 103 (149)
+++++.++ ++.|..+||++|++....+.
T Consensus 12 ~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~ 41 (462)
T TIGR01130 12 DDFIKSHEFVLVEFYAPWCGHCKSLAPEYE 41 (462)
T ss_pred HHHHhcCCCEEEEEECCCCHHHHhhhHHHH
Confidence 34444554 56788899999998876554
No 196
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=86.15 E-value=1.6 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.9
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.+|..+. ++|.+++-+|...|++|+.+.++.
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~ 32 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDR 32 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCC
Confidence 4677665 789999999999999999888764
No 197
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.11 E-value=0.53 Score=34.49 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCEEEEeeCCCccHHHHHHHH----Hhc----CCCcEEEEeC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLF----KRL----GVEPLVIELD 115 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL----~~~----gi~y~~vdid 115 (149)
..|++|+-..||||++.-..+ +++ .+.+..+.+.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 358899999999999876555 444 3445555553
No 198
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=85.96 E-value=0.76 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.429 Sum_probs=16.3
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
++.|..+||+.|++....|.+
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~ 25 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKE 25 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 567888999999987777754
No 199
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.83 E-value=2.5 Score=32.83 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=44.1
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC---------------------CCeEeccc---hhHHHHHHcCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM---------------------GGKHIGGC---TDTVKLYRKGE 136 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~---------------------~G~~IGG~---ddl~~l~~~Ge 136 (149)
-++++|-.|+|+=|..=-+.|+..|++...++.|+. +|.+|-|. +++..+.+++.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 468899999999999999999999999988887654 37777663 66777766554
No 200
>PTZ00102 disulphide isomerase; Provisional
Probab=85.75 E-value=1.1 Score=38.97 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=16.3
Q ss_pred CEEEEeeCCCccHHHHHHHHH
Q 032016 83 PVVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~ 103 (149)
-+|.|..+||++|++....+.
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~ 72 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYK 72 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHH
Confidence 367888899999998875543
No 201
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=85.72 E-value=2 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=28.4
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
..+|..+..+-|.+++-+|...|++|+.+.++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~ 33 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIE 33 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEec
Confidence 46888888999999999999999999988775
No 202
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=85.13 E-value=0.92 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+|+...||+|++++-+|...|++|+.+.++
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 31 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVN 31 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecc
Confidence 688888999999999999999999887665
No 203
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=84.98 E-value=0.9 Score=35.43 Aligned_cols=30 Identities=7% Similarity=0.310 Sum_probs=19.5
Q ss_pred EEEEeeCCCccHHHHHHHH----HhcCCCcEEEE
Q 032016 84 VVVYSKTWCSYSSEVKLLF----KRLGVEPLVIE 113 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL----~~~gi~y~~vd 113 (149)
|+.|..+|||+|++....+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5568889999999765544 33455544443
No 204
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=84.77 E-value=0.86 Score=32.01 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=18.3
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhc
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~ 105 (149)
.-++.|..+|||+|+.....|.+.
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~ 45 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHH
Confidence 346777889999999887666653
No 205
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=84.49 E-value=1 Score=32.28 Aligned_cols=22 Identities=5% Similarity=0.032 Sum_probs=16.1
Q ss_pred CEEEEeeCCCccHHHHHHHHHh
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~ 104 (149)
-|+.|..+|||+|.+....|++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 3566777999999977655544
No 206
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.46 E-value=1.5 Score=39.63 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=34.7
Q ss_pred eCCCccHHHHHHHHHhcC--C-CcEEEEeCCCC----------------------------------CeEeccchhHHHH
Q 032016 89 KTWCSYSSEVKLLFKRLG--V-EPLVIELDEMG----------------------------------GKHIGGCTDTVKL 131 (149)
Q Consensus 89 K~~CPfC~kak~lL~~~g--i-~y~~vdid~~~----------------------------------G~~IGG~ddl~~l 131 (149)
|..|||=.|+.=+-+.+. + +|.++-|-+.+ |.++|||+|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 467999999987766643 3 47777775541 8999999999998
Q ss_pred HHc
Q 032016 132 YRK 134 (149)
Q Consensus 132 ~~~ 134 (149)
.+.
T Consensus 81 ~~~ 83 (452)
T cd05295 81 AES 83 (452)
T ss_pred HHH
Confidence 653
No 207
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=2.1 Score=31.44 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCcEEEEeCCC-----------------------------CCeEeccchhHHHHHHcCCcHHHHHh
Q 032016 97 EVKLLFKRLGVEPLVIELDEM-----------------------------GGKHIGGCTDTVKLYRKGELEPLLSE 143 (149)
Q Consensus 97 kak~lL~~~gi~y~~vdid~~-----------------------------~G~~IGG~ddl~~l~~~GeL~~lL~~ 143 (149)
++..+|+...|.++.+|+... +.++.|+++.+++..+.+.|.+-|.-
T Consensus 23 evv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 23 EVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELFFEAVEQNTLQEFLGL 98 (108)
T ss_pred hhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHHHHHHHHHHHHHHHcc
Confidence 566778888899999997532 15788999999999999999988854
No 208
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=84.18 E-value=2.8 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=21.1
Q ss_pred CCEEEEeeCCCccHHHHHHHHH-------hcCCCcEEEEeCC
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFK-------RLGVEPLVIELDE 116 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~-------~~gi~y~~vdid~ 116 (149)
.-|+.|..+|||+|.+-...|. ..|+.+--|..+.
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~ 142 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQ 142 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEeccc
Confidence 3466788899999986433332 3455544555543
No 209
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=83.65 E-value=2.8 Score=35.64 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=42.5
Q ss_pred HHhcCCCEEEEeeC-------CCccHHHHHHHHHhcCCCcEEEEeCCC-------------CCeEeccchhHHHHH
Q 032016 77 KTVSENPVVVYSKT-------WCSYSSEVKLLFKRLGVEPLVIELDEM-------------GGKHIGGCTDTVKLY 132 (149)
Q Consensus 77 ~~i~~~~VvIFsK~-------~CPfC~kak~lL~~~gi~y~~vdid~~-------------~G~~IGG~ddl~~l~ 132 (149)
+..++.-|.+|.-+ -.|||.++.-+|+..+|+|+.++-... +|++|-+.|.+....
T Consensus 39 ~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L 114 (281)
T KOG4244|consen 39 TDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIELNGEHIADSDLIEDRL 114 (281)
T ss_pred hccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEeCCeeccccHHHHHHH
Confidence 45566667777663 368999999999999999998875431 499999988665443
No 210
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=83.43 E-value=2 Score=31.99 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=13.8
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
|+.|..+||| |++-...|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 4557779999 9875555544
No 211
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=1.6 Score=34.78 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=22.0
Q ss_pred HHHHHHhcCCC--EEEEeeCCCccHHHHHHHHH
Q 032016 73 ESVKKTVSENP--VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 73 ~~v~~~i~~~~--VvIFsK~~CPfC~kak~lL~ 103 (149)
+..+.+...++ ++||..+.|+||.+.|+-+.
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~ 65 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLK 65 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhc
Confidence 33444443333 78999999999999887754
No 212
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=81.52 E-value=6.1 Score=26.87 Aligned_cols=25 Identities=12% Similarity=-0.149 Sum_probs=22.4
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
+..++|.++.-+|+..|++|+.+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~ 39 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR 39 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec
Confidence 4688999999999999999998865
No 213
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=81.51 E-value=2.3 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCC-E-EEEeeCCCccHHHHHH-HHH
Q 032016 71 LEESVKKTVSENP-V-VVYSKTWCSYSSEVKL-LFK 103 (149)
Q Consensus 71 ~~~~v~~~i~~~~-V-vIFsK~~CPfC~kak~-lL~ 103 (149)
.++.++...+.++ + +.|..+||++|++..+ .|.
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~ 41 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWS 41 (114)
T ss_pred HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcC
Confidence 3444555555444 4 4555699999998754 443
No 214
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=81.38 E-value=1.4 Score=31.99 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCC-EEEEeeC-CCccHHHHHHHHH-------hcCCCcEEEEeCCC
Q 032016 81 ENP-VVVYSKT-WCSYSSEVKLLFK-------RLGVEPLVIELDEM 117 (149)
Q Consensus 81 ~~~-VvIFsK~-~CPfC~kak~lL~-------~~gi~y~~vdid~~ 117 (149)
..+ |+.|.-+ |||+|++-.-.|+ ..|+.+..+..+.+
T Consensus 28 gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 28 GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 344 5556667 9999996654443 34565555655544
No 215
>PTZ00102 disulphide isomerase; Provisional
Probab=80.88 E-value=1.3 Score=38.47 Aligned_cols=21 Identities=10% Similarity=0.518 Sum_probs=17.5
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
+|.|..+||++|++....|++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~ 399 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNE 399 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 556777999999999888865
No 216
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=80.56 E-value=3 Score=27.59 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=34.6
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCCeEeccchhHHHHHHc-CCc
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGGKHIGGCTDTVKLYRK-GEL 137 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G~~IGG~ddl~~l~~~-GeL 137 (149)
+.+|.-+. .|.+++-+|...|++|+.+.++...|++-. ++..+.+.. |++
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~--~e~~~~~p~~g~v 53 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS--PEFLAINPMFGKV 53 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS--HHHHHHTTTSSSS
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc--hhhhhccccccee
Confidence 44565555 899999999999999999888765555444 666666665 655
No 217
>PLN02412 probable glutathione peroxidase
Probab=79.87 E-value=4.3 Score=30.98 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=11.1
Q ss_pred EEEEeeCCCccHHH
Q 032016 84 VVVYSKTWCSYSSE 97 (149)
Q Consensus 84 VvIFsK~~CPfC~k 97 (149)
|+.|..+|||+|++
T Consensus 33 lv~f~a~~C~~c~~ 46 (167)
T PLN02412 33 LIVNVASKCGLTDS 46 (167)
T ss_pred EEEEeCCCCCChHH
Confidence 44577899999995
No 218
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=79.55 E-value=1.7 Score=32.31 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=15.3
Q ss_pred CEEEEeeCCCccHHHHHHHHH
Q 032016 83 PVVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~ 103 (149)
-++.|..+|||+|++....|.
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHH
Confidence 456777799999997655443
No 219
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=78.93 E-value=2.1 Score=31.83 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.4
Q ss_pred EEEEeeCCCccHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKL 100 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~ 100 (149)
|+.|..+|||+|++-..
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 57788899999986544
No 220
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=78.21 E-value=4.6 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=21.6
Q ss_pred cCCCEEEEe--eCCCccHHHHHHH-------HHhcCCCcEEEEeC
Q 032016 80 SENPVVVYS--KTWCSYSSEVKLL-------FKRLGVEPLVIELD 115 (149)
Q Consensus 80 ~~~~VvIFs--K~~CPfC~kak~l-------L~~~gi~y~~vdid 115 (149)
+..+++||. ..|||.|.+-... |.+.|+.+--+..|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 344566666 5899999974333 33456665555544
No 221
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=77.50 E-value=1.5 Score=30.50 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=13.8
Q ss_pred CCCE-EEEeeC-CCccHHHHHHHHH
Q 032016 81 ENPV-VVYSKT-WCSYSSEVKLLFK 103 (149)
Q Consensus 81 ~~~V-vIFsK~-~CPfC~kak~lL~ 103 (149)
..++ +.|..+ |||+|.+...-|.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~ 49 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELN 49 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHH
T ss_pred CCcEEEEEeCccCccccccchhHHH
Confidence 3444 444445 8999976554444
No 222
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=75.71 E-value=6.7 Score=28.92 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=23.5
Q ss_pred CCEEEEeeC-CCc--cHH----------HHHHHHHhcCCCcEEEEeCCC
Q 032016 82 NPVVVYSKT-WCS--YSS----------EVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 82 ~~VvIFsK~-~CP--fC~----------kak~lL~~~gi~y~~vdid~~ 117 (149)
.+|++|..+ ||+ +|+ .+.++|+..++.+-.+|+|+.
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 356777665 554 497 233445556788888898875
No 223
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=75.44 E-value=2.4 Score=36.18 Aligned_cols=21 Identities=14% Similarity=0.632 Sum_probs=17.1
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
+|.|..+||+.|++....+++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 566888999999988777765
No 224
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=75.23 E-value=3.6 Score=27.83 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHhcC------CCcEEEEeCC
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKRLG------VEPLVIELDE 116 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~~g------i~y~~vdid~ 116 (149)
..-+++|..+||+.|++.+..|++.. +.|-.+|.++
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~ 54 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD 54 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh
Confidence 33466788899999999999987622 4455566554
No 225
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=74.81 E-value=4.4 Score=28.54 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC-------CeEeccchhHHHHH
Q 032016 72 EESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-------GKHIGGCTDTVKLY 132 (149)
Q Consensus 72 ~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~-------G~~IGG~ddl~~l~ 132 (149)
++.+++.+...+.+||.-+.=---+.+-.+|+.+..++-++-+|+++ |-|.||.+++....
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vIplL~GH~GGan~lA~~i 69 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVIPLLGGHRGGANELARQI 69 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEEEEE-TTTT-HHHHHHHH
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEEEeccCCcchHHHHHHHH
Confidence 35677888888888887754444455566677788888999999885 77888888876654
No 226
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=73.86 E-value=6.6 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=11.8
Q ss_pred CCCEEEEe--eCCCccHHHHH
Q 032016 81 ENPVVVYS--KTWCSYSSEVK 99 (149)
Q Consensus 81 ~~~VvIFs--K~~CPfC~kak 99 (149)
..+++|+. ..|||+|.+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~ 43 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEA 43 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHH
Confidence 34455444 47899998543
No 227
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=73.34 E-value=19 Score=28.24 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=24.4
Q ss_pred HhcCCCEEE-EeeCCCccHH----HHHHHHHh---cCCCcEEEEeCCC
Q 032016 78 TVSENPVVV-YSKTWCSYSS----EVKLLFKR---LGVEPLVIELDEM 117 (149)
Q Consensus 78 ~i~~~~VvI-FsK~~CPfC~----kak~lL~~---~gi~y~~vdid~~ 117 (149)
.....-|.+ |+-.|||-|+ ..++++++ .+-+++++=|+.+
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 333333444 5558999999 45666554 4445777777654
No 228
>PTZ00256 glutathione peroxidase; Provisional
Probab=72.50 E-value=3.8 Score=31.68 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.6
Q ss_pred EEEeeCCCccHHHHH
Q 032016 85 VVYSKTWCSYSSEVK 99 (149)
Q Consensus 85 vIFsK~~CPfC~kak 99 (149)
++|..+|||+|++-.
T Consensus 46 v~n~atwCp~C~~e~ 60 (183)
T PTZ00256 46 VVNVACKCGLTSDHY 60 (183)
T ss_pred EEEECCCCCchHHHH
Confidence 356789999999733
No 229
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=72.21 E-value=8.3 Score=28.32 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=12.0
Q ss_pred cCCCEEEEee--CCCccHHHH
Q 032016 80 SENPVVVYSK--TWCSYSSEV 98 (149)
Q Consensus 80 ~~~~VvIFsK--~~CPfC~ka 98 (149)
+..+++||.. .+||+|...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~ 49 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQ 49 (154)
T ss_pred CCCCEEEEEECCCCCCchHHH
Confidence 4455666655 479999643
No 230
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=71.37 E-value=5.1 Score=28.98 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=13.7
Q ss_pred CCEE-EEe-eCCCccHHHHHHHHH
Q 032016 82 NPVV-VYS-KTWCSYSSEVKLLFK 103 (149)
Q Consensus 82 ~~Vv-IFs-K~~CPfC~kak~lL~ 103 (149)
..++ +|. .+|||.|.+...-|.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~ 52 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALR 52 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHH
Confidence 4444 444 589999996544443
No 231
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=71.00 E-value=2.5 Score=38.63 Aligned_cols=28 Identities=14% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCEEEEeeCCCccHHHHHHHHHhcCCCc
Q 032016 82 NPVVVYSKTWCSYSSEVKLLFKRLGVEP 109 (149)
Q Consensus 82 ~~VvIFsK~~CPfC~kak~lL~~~gi~y 109 (149)
+-.+-|-.|||++|++..-++++++-.|
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 3456788899999999998888765443
No 232
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=70.40 E-value=9.5 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 91 WCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 91 ~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
.||||+++-..|...+++|.+.-||
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd 44 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVD 44 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEee
Confidence 5999999999999999998765554
No 233
>PLN02395 glutathione S-transferase
Probab=69.83 E-value=9.7 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
+.+|+.+.| .+++++=+|.+.|++|+.+.++.
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~ 34 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDL 34 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEecc
Confidence 578887665 48999999999999999887763
No 234
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=68.48 E-value=8.6 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCEEEEe--eCCCccHHHHHHHHH-------hcCCCcEEEEeC
Q 032016 81 ENPVVVYS--KTWCSYSSEVKLLFK-------RLGVEPLVIELD 115 (149)
Q Consensus 81 ~~~VvIFs--K~~CPfC~kak~lL~-------~~gi~y~~vdid 115 (149)
...++||. .+|||.|......|. +.|+.+-.|.+|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d 72 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD 72 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 34566665 479999997555443 345555445444
No 235
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=68.37 E-value=5.6 Score=28.44 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=14.6
Q ss_pred CEEEEeeCCCcc-HHHHHHHHH
Q 032016 83 PVVVYSKTWCSY-SSEVKLLFK 103 (149)
Q Consensus 83 ~VvIFsK~~CPf-C~kak~lL~ 103 (149)
-|+.|.-+|||+ |.+....|+
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHH
Confidence 466777799998 986544444
No 236
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.61 E-value=4.2 Score=30.61 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=24.2
Q ss_pred CEEEEeeCCCccHHHHHHHHH----hc-CCCcEEEEeC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFK----RL-GVEPLVIELD 115 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~----~~-gi~y~~vdid 115 (149)
+|++|.-..||||..+...|. .+ +++++..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 378999999999997776655 45 6766665554
No 237
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=66.01 E-value=6.9 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=14.6
Q ss_pred cCCCEEEEe--eCCCccHHHHHHHHH
Q 032016 80 SENPVVVYS--KTWCSYSSEVKLLFK 103 (149)
Q Consensus 80 ~~~~VvIFs--K~~CPfC~kak~lL~ 103 (149)
+..+++||. ..|||+|.+...-|.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~ 46 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFR 46 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHH
Confidence 344555544 469999997544443
No 238
>smart00594 UAS UAS domain.
Probab=65.22 E-value=9.2 Score=27.58 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCC--CEEEEeeCCCccHHHHHH
Q 032016 71 LEESVKKTVSEN--PVVVYSKTWCSYSSEVKL 100 (149)
Q Consensus 71 ~~~~v~~~i~~~--~VvIFsK~~CPfC~kak~ 100 (149)
.++.+++..+.. .++.+..+||++|++..+
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r 47 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNR 47 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHH
Confidence 444455555553 355666699999997544
No 239
>PRK10824 glutaredoxin-4; Provisional
Probab=65.11 E-value=2.2 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.7
Q ss_pred cCCCCCccccccccchhc
Q 032016 36 NYYTFSSRTSLSVNGRRR 53 (149)
Q Consensus 36 ~~~~~~~~~~l~i~~~~~ 53 (149)
..+.|+|.||++|+|+..
T Consensus 64 ~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 64 KYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHhCCCCCCeEEECCEEE
Confidence 347899999999999986
No 240
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=64.71 E-value=14 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=19.9
Q ss_pred CCEEE--EeeCCCccHHHHHH-------HHHhcCCCcEEEEeC
Q 032016 82 NPVVV--YSKTWCSYSSEVKL-------LFKRLGVEPLVIELD 115 (149)
Q Consensus 82 ~~VvI--FsK~~CPfC~kak~-------lL~~~gi~y~~vdid 115 (149)
..+++ |-.+|||.|..-.. -|++.|+.+--+.+|
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34555 44488999986433 344456655555544
No 241
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=63.53 E-value=9.2 Score=30.41 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=28.9
Q ss_pred HhcCCCEEEEeeCCCccHHHHHHHHH---hcCCCc------EEEEeCC
Q 032016 78 TVSENPVVVYSKTWCSYSSEVKLLFK---RLGVEP------LVIELDE 116 (149)
Q Consensus 78 ~i~~~~VvIFsK~~CPfC~kak~lL~---~~gi~y------~~vdid~ 116 (149)
+..+-.++-|.-+||+.|+.-.-+|+ ..|+++ ..|++|+
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD 104 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc
Confidence 44455688899999999997666654 467887 6777765
No 242
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=63.21 E-value=7.8 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=13.0
Q ss_pred EEEEeeCCCccHHHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLF 102 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL 102 (149)
|+.|..+|||.|.+...-|
T Consensus 29 ll~f~~t~Cp~c~~~~~~l 47 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRL 47 (171)
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5566669999998544333
No 243
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.73 E-value=13 Score=29.78 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=31.1
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
++.+|+.+.-|.|+++.-.++..|++|+.+.++..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~ 36 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLV 36 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecc
Confidence 46799999999999999999999999998876654
No 244
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=61.70 E-value=37 Score=26.16 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcC--CCEEEEeeCCC------ccHHHHHHHHHhcCCCcEEEEeCCCCCeEeccchhHHHHHHcCCcHHH
Q 032016 70 RLEESVKKTVSE--NPVVVYSKTWC------SYSSEVKLLFKRLGVEPLVIELDEMGGKHIGGCTDTVKLYRKGELEPL 140 (149)
Q Consensus 70 ~~~~~v~~~i~~--~~VvIFsK~~C------PfC~kak~lL~~~gi~y~~vdid~~~G~~IGG~ddl~~l~~~GeL~~l 140 (149)
+.++++++++.. .+.++-+.+|+ +.-...+++++++|+...+++.-..+|+-| ..+.+.++.++|+++..
T Consensus 86 s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~i-SST~IR~~i~~G~i~~a 163 (180)
T cd02064 86 SAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERV-SSTRIREALAEGDVELA 163 (180)
T ss_pred CHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEE-cHHHHHHHHHhCCHHHH
Confidence 567788876643 46777777775 233456777888888777766544556655 45578999999998754
No 245
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=60.93 E-value=19 Score=28.39 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=12.3
Q ss_pred CEEEEeeCCCccHHHHH
Q 032016 83 PVVVYSKTWCSYSSEVK 99 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak 99 (149)
-+++|..+||++|.+..
T Consensus 28 vLVvf~AS~C~~~~q~~ 44 (183)
T PRK10606 28 LLIVNVASKCGLTPQYE 44 (183)
T ss_pred EEEEEEeCCCCCcHHHH
Confidence 35677779999997533
No 246
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=60.79 E-value=7.3 Score=35.83 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=16.3
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
|+-|..+|||.|++....|.+
T Consensus 60 vV~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 556777999999998766654
No 247
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=8.8 Score=32.68 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=26.0
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCC-----cEEEEeCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVE-----PLVIELDE 116 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~-----y~~vdid~ 116 (149)
-+|=|+.+||+-|+++--+|+.+--. |-.||+|+
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~ 62 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE 62 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH
Confidence 36779999999999999998875333 45677765
No 248
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=58.85 E-value=9.8 Score=33.37 Aligned_cols=31 Identities=23% Similarity=0.630 Sum_probs=23.9
Q ss_pred HHHHhcCCCEE--EEeeCCCccHHHHHHHHHhc
Q 032016 75 VKKTVSENPVV--VYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 75 v~~~i~~~~Vv--IFsK~~CPfC~kak~lL~~~ 105 (149)
++.++..+.+| -|..+||||+++.+-+|.+.
T Consensus 6 ~~~il~s~elvfv~FyAdWCrFSq~L~piF~EA 38 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYADWCRFSQMLKPIFEEA 38 (375)
T ss_pred HHHhhccceEEeeeeehhhchHHHHHhHHHHHH
Confidence 44566667654 57779999999999999863
No 249
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=58.69 E-value=11 Score=27.20 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=15.2
Q ss_pred CCCEEEEee-CC-CccHHHHHHHHHh
Q 032016 81 ENPVVVYSK-TW-CSYSSEVKLLFKR 104 (149)
Q Consensus 81 ~~~VvIFsK-~~-CPfC~kak~lL~~ 104 (149)
..+++|+.. +| ||+|++-...|.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 445555544 46 7999976666543
No 250
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=58.68 E-value=54 Score=26.90 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCCEEEEeeC------CCccHHHHHHHHHhcCCCcEEEEeCCC--------CCeEeccchhH--HHHH
Q 032016 69 SRLEESVKKTVSENPVVVYSKT------WCSYSSEVKLLFKRLGVEPLVIELDEM--------GGKHIGGCTDT--VKLY 132 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK~------~CPfC~kak~lL~~~gi~y~~vdid~~--------~G~~IGG~ddl--~~l~ 132 (149)
+.....+.+.+...+-++|.-+ +=.|..+.++.|+++|++...++..++ ++.+|||-+-+ .+..
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l 97 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQL 97 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHH
Confidence 3445566666666666666652 345789999999999998766665432 58899777653 3333
Q ss_pred HcCCcHHHHHh
Q 032016 133 RKGELEPLLSE 143 (149)
Q Consensus 133 ~~GeL~~lL~~ 143 (149)
+.-.|.+.|++
T Consensus 98 ~~~gl~~~l~~ 108 (233)
T PRK05282 98 YERGLLAPIRE 108 (233)
T ss_pred HHCCcHHHHHH
Confidence 44556666654
No 251
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=58.58 E-value=17 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHh
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
++++..+++-+.-.+++|.-+. ++|.+++++|++
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e 42 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDS-EKSAELLELLEE 42 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHH
Confidence 4444444433334455677666 999999999986
No 252
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.46 E-value=12 Score=26.17 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=21.5
Q ss_pred EeeCCCccHHHHHHHHHhcCC--CcEEEEe
Q 032016 87 YSKTWCSYSSEVKLLFKRLGV--EPLVIEL 114 (149)
Q Consensus 87 FsK~~CPfC~kak~lL~~~gi--~y~~vdi 114 (149)
|--..||+|....+.+..... .+..+++
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEEC
Confidence 445689999999999998764 4566666
No 253
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=57.21 E-value=25 Score=30.18 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCC-------CeEeccchhHHHHH
Q 032016 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMG-------GKHIGGCTDTVKLY 132 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~-------G~~IGG~ddl~~l~ 132 (149)
..+.+.+++.+..++.+||.-..=--=+.+--+|+.+..++-++-+|+.+ +-|.||.+++....
T Consensus 39 ~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK~~DPaVvvvDe~G~~vIsLLsGH~GGAN~LA~~i 109 (315)
T PRK05788 39 EGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDKWSDPAVVVVDEKGKFVISLLSGHHGGANELARDL 109 (315)
T ss_pred CCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhccCcCCCEEEEeCCCCEEEEcccCCcccHHHHHHHH
Confidence 45778899999999988888743222333334466777788899999875 78999998876654
No 254
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.00 E-value=6.9 Score=29.54 Aligned_cols=22 Identities=9% Similarity=0.374 Sum_probs=17.7
Q ss_pred CEEEEeeCCCccHHHHHHHHHh
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~ 104 (149)
+|.+|.-+.||||..+.+.|++
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~ 23 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEK 23 (193)
T ss_pred eEEEEECCCCchhhCchHHHHH
Confidence 4789999999999977666653
No 255
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=55.85 E-value=55 Score=24.34 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhc-CCCEEEEeeCCCccHH------------HHHHHHHhcCCCcEEEEeCCC
Q 032016 69 SRLEESVKKTVS-ENPVVVYSKTWCSYSS------------EVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 69 ~~~~~~v~~~i~-~~~VvIFsK~~CPfC~------------kak~lL~~~gi~y~~vdid~~ 117 (149)
..+.+.++++.+ ...|++.|-.....+. .+.+.|++++++|..+.+.+.
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp 88 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKP 88 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCC
Confidence 455566666644 4456665555555555 889999999999999998664
No 256
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=55.64 E-value=26 Score=29.34 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=25.1
Q ss_pred HHHhcCCCEEEEee--CCCccHHH-------HHHHHHhcCCCcEEEEeCC
Q 032016 76 KKTVSENPVVVYSK--TWCSYSSE-------VKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 76 ~~~i~~~~VvIFsK--~~CPfC~k-------ak~lL~~~gi~y~~vdid~ 116 (149)
.+..+...+++|.. .|||.|.. ..+-|++.|+.+--+.+|.
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34445557777755 79999997 3333445666655555543
No 257
>PRK15000 peroxidase; Provisional
Probab=55.48 E-value=26 Score=27.66 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=13.8
Q ss_pred cCCCEEEEeeC--CCccHHHHH
Q 032016 80 SENPVVVYSKT--WCSYSSEVK 99 (149)
Q Consensus 80 ~~~~VvIFsK~--~CPfC~kak 99 (149)
+...+++|..+ |||.|.+-.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El 54 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSEL 54 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHH
Confidence 44567777775 689998633
No 258
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=54.98 E-value=29 Score=23.14 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=25.8
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGG 119 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G 119 (149)
+|.-..-+-|++++-+|...|++|+.+.++-..|
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~ 36 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDA 36 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCc
Confidence 3444445788899999999999999888875443
No 259
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=54.66 E-value=8.1 Score=30.40 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCCEEEEeeCCCccHHHHHH
Q 032016 81 ENPVVVYSKTWCSYSSEVKL 100 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~ 100 (149)
...|+.|..-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34599999999999998654
No 260
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.61 E-value=6 Score=32.69 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.3
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~ 105 (149)
.|.+|+-.-||||.--++-|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 47788889999999777777653
No 261
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=53.78 E-value=21 Score=32.72 Aligned_cols=43 Identities=19% Similarity=0.409 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCE--EEEeeCCCccHH-------HHHHHHHhcCCCcEEEEeC
Q 032016 73 ESVKKTVSENPV--VVYSKTWCSYSS-------EVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 73 ~~v~~~i~~~~V--vIFsK~~CPfC~-------kak~lL~~~gi~y~~vdid 115 (149)
+-.++.|..+.+ |-|-.|||++|+ +|-+.|.+.|-+...-.||
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVD 84 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVD 84 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEee
Confidence 345577878875 467779999999 4556666665444444444
No 262
>PRK13599 putative peroxiredoxin; Provisional
Probab=52.33 E-value=30 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCCEEEEee--CCCccHHH-------HHHHHHhcCCCcEEEEeC
Q 032016 81 ENPVVVYSK--TWCSYSSE-------VKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 81 ~~~VvIFsK--~~CPfC~k-------ak~lL~~~gi~y~~vdid 115 (149)
...+++|+- +|||.|.. ..+-|.+.|+..--+.+|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D 71 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD 71 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 335554444 78999996 333344456654444444
No 263
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=52.31 E-value=18 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+..+||+|..++|+.+.++-..|...|..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 56789999999999999999999999975
No 264
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.91 E-value=17 Score=32.94 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=23.6
Q ss_pred CEEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEe
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIEL 114 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdi 114 (149)
.+++|.-+.|++|.+++++|++. .|.++++|.
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~ 405 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNR 405 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecc
Confidence 45678888999999999999873 344555553
No 265
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.16 E-value=47 Score=22.94 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCEEEEeeCCCcc--HHHHHHHHHhcCCCcEEEE
Q 032016 72 EESVKKTVSENPVVVYSKTWCSY--SSEVKLLFKRLGVEPLVIE 113 (149)
Q Consensus 72 ~~~v~~~i~~~~VvIFsK~~CPf--C~kak~lL~~~gi~y~~vd 113 (149)
+..+...++..++||+...++.+ +..+++.-++.++|+....
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 44688999999999999988776 6799999999999977653
No 266
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.10 E-value=12 Score=29.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.4
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHh
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
...+++|.-..||||++.-.-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 456888899999999766666655
No 267
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=49.92 E-value=17 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcE
Q 032016 73 ESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPL 110 (149)
Q Consensus 73 ~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~ 110 (149)
+.+++.... ++..|.-|+..+...+.+++.+.|..|.
T Consensus 87 ~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y~ 123 (123)
T PF01522_consen 87 EILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKYD 123 (123)
T ss_dssp HHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EEE
T ss_pred HHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCcC
Confidence 444555544 7888999999999999999999998763
No 268
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.83 E-value=17 Score=25.09 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=20.9
Q ss_pred CCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 90 TWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 90 ~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
.-=+||+++-++|+++|++|+-+--
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecC
Confidence 3468999999999999999876653
No 269
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=49.21 E-value=1.3e+02 Score=25.05 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=47.0
Q ss_pred HHHHHHHHhcC-CCEEEEee------CCCccHHHHHHHHHhcCCCcEEEEeCCC------------CCeEeccchh---H
Q 032016 71 LEESVKKTVSE-NPVVVYSK------TWCSYSSEVKLLFKRLGVEPLVIELDEM------------GGKHIGGCTD---T 128 (149)
Q Consensus 71 ~~~~v~~~i~~-~~VvIFsK------~~CPfC~kak~lL~~~gi~y~~vdid~~------------~G~~IGG~dd---l 128 (149)
..+++.+.++. .+=+.|.= .+=+|-.++++.|.++|..+..+++... +..+|||-.. +
T Consensus 20 ~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL 99 (224)
T COG3340 20 FLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLL 99 (224)
T ss_pred hhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHH
Confidence 44566665554 34444543 5678999999999999999888887543 4788988654 3
Q ss_pred HHHHHcCCcHHHH
Q 032016 129 VKLYRKGELEPLL 141 (149)
Q Consensus 129 ~~l~~~GeL~~lL 141 (149)
..+.+.|-+.-+.
T Consensus 100 ~~lke~gld~iIr 112 (224)
T COG3340 100 QELKETGLDDIIR 112 (224)
T ss_pred HHHHHhCcHHHHH
Confidence 4444555444333
No 270
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=48.08 E-value=35 Score=27.84 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=28.9
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
....+.+|.|..|+-|......+..-+-+++.+=++
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 456799999999999998888887767676666555
No 271
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=48.02 E-value=40 Score=22.55 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=33.0
Q ss_pred CccHHHHHHHHHhcCCC---cEEEEeCC-------------C-CCeEeccchhHHHHH
Q 032016 92 CSYSSEVKLLFKRLGVE---PLVIELDE-------------M-GGKHIGGCTDTVKLY 132 (149)
Q Consensus 92 CPfC~kak~lL~~~gi~---y~~vdid~-------------~-~G~~IGG~ddl~~l~ 132 (149)
-|.|-++..+|+-.+.+ ++++.... + +++.+.|+.++.++.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 67899999999999998 77776542 1 478999999988764
No 272
>PRK13190 putative peroxiredoxin; Provisional
Probab=47.88 E-value=29 Score=27.36 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=19.4
Q ss_pred CCEEE--EeeCCCccHHHHHHHHH-------hcCCCcEEEEeC
Q 032016 82 NPVVV--YSKTWCSYSSEVKLLFK-------RLGVEPLVIELD 115 (149)
Q Consensus 82 ~~VvI--FsK~~CPfC~kak~lL~-------~~gi~y~~vdid 115 (149)
..++| |-.+|||.|..-...|. +.|+..--+.+|
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D 70 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD 70 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555 45589999985443333 345554444444
No 273
>PTZ00057 glutathione s-transferase; Provisional
Probab=47.83 E-value=38 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.7
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
++++|..+..+.|.+++=+|...|++|+.+.++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~ 36 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFG 36 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEecc
Confidence 478898888999999999999999999887553
No 274
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.22 E-value=16 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=19.7
Q ss_pred EEEEeeCCCccHHHHHHHHHh----cCCCcE
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR----LGVEPL 110 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~----~gi~y~ 110 (149)
|.+|+-.-||||.-++..|++ ++++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 357888999999987777664 455444
No 275
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=45.69 E-value=25 Score=25.15 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.1
Q ss_pred cCCCEEEEee-CCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 80 SENPVVVYSK-TWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 80 ~~~~VvIFsK-~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
...+++|++. +....|.+|.+.|++.|++..++++
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEee
Confidence 3456777777 6689999999999999999888886
No 276
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.42 E-value=14 Score=29.26 Aligned_cols=24 Identities=8% Similarity=0.139 Sum_probs=19.5
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLG 106 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~g 106 (149)
++.+|..+.||||+++-+.++...
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHhc
Confidence 356788899999999999887643
No 277
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=45.27 E-value=14 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.0
Q ss_pred CEEEEeeCCCccHHH--HHHHH
Q 032016 83 PVVVYSKTWCSYSSE--VKLLF 102 (149)
Q Consensus 83 ~VvIFsK~~CPfC~k--ak~lL 102 (149)
+|.||.-+.||+|++ ..++.
T Consensus 2 ~v~vyyESlCPd~~~fi~~~L~ 23 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITNQLF 23 (108)
T ss_pred EEEEEEEecCHhHHHHHHHHHH
Confidence 588999999999997 34444
No 278
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.59 E-value=12 Score=32.20 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=11.4
Q ss_pred EEeeCCCccHHHHHHH
Q 032016 86 VYSKTWCSYSSEVKLL 101 (149)
Q Consensus 86 IFsK~~CPfC~kak~l 101 (149)
+=-|+.||||++-.++
T Consensus 267 vGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 267 VGKKQTCPYCKEKVDL 282 (328)
T ss_pred ecCCCCCchHHHHhhH
Confidence 3334899999976554
No 279
>PRK13191 putative peroxiredoxin; Provisional
Probab=44.44 E-value=49 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=19.9
Q ss_pred CCCEEEE--eeCCCccHHHHHHH-------HHhcCCCcEEEEeC
Q 032016 81 ENPVVVY--SKTWCSYSSEVKLL-------FKRLGVEPLVIELD 115 (149)
Q Consensus 81 ~~~VvIF--sK~~CPfC~kak~l-------L~~~gi~y~~vdid 115 (149)
...++|| -.+|||.|..-... |++.|+.+--+.+|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D 76 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD 76 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3355554 44889999864433 33455554445544
No 280
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=44.20 E-value=67 Score=23.66 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=37.9
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCc--EEEEeC---CC-------------CCeEeccchh---------HHHHHHcC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEP--LVIELD---EM-------------GGKHIGGCTD---------TVKLYRKG 135 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y--~~vdid---~~-------------~G~~IGG~dd---------l~~l~~~G 135 (149)
+|++|.=.||.|-..=..-......|. ..|.+. .. +|.+|.||.. .....+-.
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~ 80 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVE 80 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHH
Confidence 588999899998765333333444443 444442 11 4888888752 22233345
Q ss_pred CcHHHHHhhhh
Q 032016 136 ELEPLLSEAKS 146 (149)
Q Consensus 136 eL~~lL~~~ga 146 (149)
.++++|++.|+
T Consensus 81 ~~k~~L~~~Gi 91 (124)
T PF02662_consen 81 RLKKLLEELGI 91 (124)
T ss_pred HHHHHHHHcCC
Confidence 56778877775
No 281
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=43.99 E-value=41 Score=26.45 Aligned_cols=17 Identities=6% Similarity=-0.048 Sum_probs=12.0
Q ss_pred CCEEEEe--eCCCccHHHH
Q 032016 82 NPVVVYS--KTWCSYSSEV 98 (149)
Q Consensus 82 ~~VvIFs--K~~CPfC~ka 98 (149)
.++++|. ..|||.|.+-
T Consensus 32 k~vvL~F~P~~~~p~C~~e 50 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTE 50 (187)
T ss_pred CeEEEEEECCCCCCcCHHH
Confidence 3566655 4899999973
No 282
>PRK00758 GMP synthase subunit A; Validated
Probab=41.82 E-value=87 Score=23.87 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=38.2
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeC-------CC-CCeEeccchhHHHHHHcCCcHHHHHhh
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELD-------EM-GGKHIGGCTDTVKLYRKGELEPLLSEA 144 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid-------~~-~G~~IGG~ddl~~l~~~GeL~~lL~~~ 144 (149)
++...-+|.|+..+.++|++.|+++..+..+ +. +|-++.|..+. ...+.+.+++.+.
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~~---~~~~~~~~~l~~~ 66 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPDI---ERAGNCPEYLKEL 66 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCCh---hhccccHHHHHhC
Confidence 3455678999999999999999987766533 23 57677554433 2345566666543
No 283
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.87 E-value=24 Score=26.82 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=15.6
Q ss_pred EEEEeeCCCccHHHHHHHHH
Q 032016 84 VVVYSKTWCSYSSEVKLLFK 103 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~ 103 (149)
|.+|+-.-||||.-+..-|+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 45888999999996666654
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=40.72 E-value=21 Score=35.35 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=15.4
Q ss_pred EEEEeeCCCccHHHHHHHHHh
Q 032016 84 VVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~ 104 (149)
|+-|..+|||.|++..-.|++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHH
Confidence 456667999999986666543
No 285
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=40.59 E-value=71 Score=23.94 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHhcCCCEEEEee--CCCccHHHH--------HHHHHhcCCC-cEEEEeC
Q 032016 77 KTVSENPVVVYSK--TWCSYSSEV--------KLLFKRLGVE-PLVIELD 115 (149)
Q Consensus 77 ~~i~~~~VvIFsK--~~CPfC~ka--------k~lL~~~gi~-y~~vdid 115 (149)
+..+..+++||.. .+||.|..- .+-|++.|+. .-.+-.|
T Consensus 25 ~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 25 ELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred HHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 3334557777777 469999864 3334555653 4444433
No 286
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=40.51 E-value=46 Score=24.81 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcCCCcEEEEeCCC------------CCeEeccchhH--HHHHHcCCcHHHHHh
Q 032016 94 YSSEVKLLFKRLGVEPLVIELDEM------------GGKHIGGCTDT--VKLYRKGELEPLLSE 143 (149)
Q Consensus 94 fC~kak~lL~~~gi~y~~vdid~~------------~G~~IGG~ddl--~~l~~~GeL~~lL~~ 143 (149)
|-.+.++.|+++|+++..+++... +..+++|-+-. .+..++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHH
Confidence 346889999999998777777653 47888777654 333455667666655
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.49 E-value=33 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhc
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~ 105 (149)
++++..+++-+.-.+++|.. .|++|.+++++|++.
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 9 QLKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 34444444333334555655 799999999999873
No 288
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=22 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=19.8
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHh
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
+..-+|.|-.|||++|++...-+.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~ 71 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKK 71 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHH
Confidence 3455889999999999987776664
No 289
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=39.38 E-value=34 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=20.6
Q ss_pred CEEEEeeCCCccHHHHHHHHH----hcCCCcE
Q 032016 83 PVVVYSKTWCSYSSEVKLLFK----RLGVEPL 110 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~----~~gi~y~ 110 (149)
+|-+|+-.-||||.-+++-|+ ..+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 577999999999997776665 3555443
No 290
>PRK13189 peroxiredoxin; Provisional
Probab=39.34 E-value=59 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=18.8
Q ss_pred CCCEEEEe--eCCCccHHHHH-------HHHHhcCCCcEEEEeC
Q 032016 81 ENPVVVYS--KTWCSYSSEVK-------LLFKRLGVEPLVIELD 115 (149)
Q Consensus 81 ~~~VvIFs--K~~CPfC~kak-------~lL~~~gi~y~~vdid 115 (149)
...+++|. .+|||.|..-. +-|++.|+..--+.+|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 33465543 47899998532 2234455554444444
No 291
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=38.98 E-value=86 Score=20.57 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
++.+.+..+-+..+|++|.. .+..+..+...|...|.+
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 34445555446678888887 778888999999999875
No 292
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=38.45 E-value=66 Score=23.47 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCCEEEEeeC-CCccHHHHHHHHHh----c--CCCcEEEEeCCC
Q 032016 81 ENPVVVYSKT-WCSYSSEVKLLFKR----L--GVEPLVIELDEM 117 (149)
Q Consensus 81 ~~~VvIFsK~-~CPfC~kak~lL~~----~--gi~y~~vdid~~ 117 (149)
..+++||=-+ +||-+..|.+-|++ . .+++.++||-+.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~ 62 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY 62 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC
Confidence 4567777654 59999999988875 1 277888887543
No 293
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.15 E-value=20 Score=30.84 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=18.7
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHh
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~ 104 (149)
+...+|.|.-|||++|++....+++
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~ 186 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEK 186 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHH
Confidence 3445888889999999988555544
No 294
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=37.13 E-value=1e+02 Score=22.05 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.7
Q ss_pred hcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 79 VSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 79 i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
-+..+|++|.......+.++..+|+..|++ +..+
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L 117 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLL 117 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEe
Confidence 355689999987778888999999999985 4444
No 295
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=37.04 E-value=1.2e+02 Score=20.03 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCC
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGV 107 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi 107 (149)
++++.+..+-...+||+|... ...+..+...|+..|+
T Consensus 40 ~~~~~~~~~~~~~~vvl~c~~-g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 40 ELRDRLNELPKDKEIIVYCAV-GLRGYIAARILTQNGF 76 (90)
T ss_pred HHHHHHHhcCCCCcEEEEcCC-ChhHHHHHHHHHHCCC
Confidence 344555544445688888653 3557777778899998
No 296
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=36.67 E-value=11 Score=33.24 Aligned_cols=27 Identities=19% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcE
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPL 110 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~ 110 (149)
+|=|-.|||.+|++..-+.++.|.+..
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elk 73 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELK 73 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchh
Confidence 567888999999999988887766543
No 297
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=36.64 E-value=35 Score=25.82 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=13.6
Q ss_pred CCEEEEee-CC-CccHHHHHHHHHh
Q 032016 82 NPVVVYSK-TW-CSYSSEVKLLFKR 104 (149)
Q Consensus 82 ~~VvIFsK-~~-CPfC~kak~lL~~ 104 (149)
.+++|+.. +| ||.|.+-..-|.+
T Consensus 45 k~vvl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 45 KRKVLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred CEEEEEEEcCCCCCccHHHHHHHHH
Confidence 34444444 56 9999975544443
No 298
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.35 E-value=41 Score=30.12 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhc
Q 032016 70 RLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRL 105 (149)
Q Consensus 70 ~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~ 105 (149)
++++..+++-+.-.+++|.- .|++|.+++++|++.
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 34444444333333445555 799999999999863
No 299
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=35.20 E-value=37 Score=26.65 Aligned_cols=16 Identities=13% Similarity=0.586 Sum_probs=9.9
Q ss_pred EEEeeCCCccHHHHHH
Q 032016 85 VVYSKTWCSYSSEVKL 100 (149)
Q Consensus 85 vIFsK~~CPfC~kak~ 100 (149)
+-++.++|.+|+.+.+
T Consensus 42 l~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 42 LSIGYSWCHWCHVMER 57 (163)
T ss_dssp EEEE-TT-HHHHHHHH
T ss_pred EEEEecCCcchhhhcc
Confidence 3455699999996554
No 300
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=34.53 E-value=1.2e+02 Score=22.14 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=21.4
Q ss_pred CCccHH-HHHHHHHhcCCCcEEEEeCC
Q 032016 91 WCSYSS-EVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 91 ~CPfC~-kak~lL~~~gi~y~~vdid~ 116 (149)
.|--|. .+++.|.+.||+.+.+.+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 588887 45788999999999888864
No 301
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=33.18 E-value=24 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=16.3
Q ss_pred EEEEeeCCCccHHHHH----HHHHhcCC
Q 032016 84 VVVYSKTWCSYSSEVK----LLFKRLGV 107 (149)
Q Consensus 84 VvIFsK~~CPfC~kak----~lL~~~gi 107 (149)
|+..+..+||||...+ -.|.++|-
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcCC
Confidence 4445568999998654 45667764
No 302
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=33.01 E-value=81 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=20.3
Q ss_pred CCEEEEee--CCCccHHHHHHH-------HHhcCCCcEEEEeCC
Q 032016 82 NPVVVYSK--TWCSYSSEVKLL-------FKRLGVEPLVIELDE 116 (149)
Q Consensus 82 ~~VvIFsK--~~CPfC~kak~l-------L~~~gi~y~~vdid~ 116 (149)
..++||.. .+||.|.....- |...|+.+-.+..|.
T Consensus 37 k~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 37 KWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 35555555 578888853333 344566665666553
No 303
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=32.54 E-value=46 Score=28.26 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCccHHHHH--HHHHhcCCCc------EEEEeCCCCC--eEeccchhHHHHHHcCC
Q 032016 69 SRLEESVKKTVSENPVVVYSKTWCSYSSEVK--LLFKRLGVEP------LVIELDEMGG--KHIGGCTDTVKLYRKGE 136 (149)
Q Consensus 69 ~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak--~lL~~~gi~y------~~vdid~~~G--~~IGG~ddl~~l~~~Ge 136 (149)
.++.++-+++|.++.+.+|.--....|-+-+ .+|+...|+. +++|++..+| -++||.--...-++.|+
T Consensus 119 s~l~e~ErrLieEHDlavf~~GsF~dCI~~~K~~Lf~~i~iPvvVtGgPeeid~~D~pga~~YVG~iGR~~~Rlrrge 196 (310)
T COG4052 119 SQLREYERRLIEEHDLAVFVFGSFEDCIKKKKPHLFEGIEIPVVVTGGPEEIDTEDVPGADLYVGNIGRVSHRLRRGE 196 (310)
T ss_pred HHHHHHHHHhhhhcceEEEEecCHHHHHhhcCCcccccccccEEEeCCcccccCCCCCCcceeeccccccchhhccch
Confidence 4567788899999999999998888888764 3566666664 4556655554 57888755554445554
No 304
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=32.36 E-value=63 Score=27.01 Aligned_cols=64 Identities=19% Similarity=0.122 Sum_probs=36.1
Q ss_pred EEEEeeCCCccHHHHHHHHHhc-----CCCcEEEEeCC------C------------CCeEeccc----hhHHHHHHcCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRL-----GVEPLVIELDE------M------------GGKHIGGC----TDTVKLYRKGE 136 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~-----gi~y~~vdid~------~------------~G~~IGG~----ddl~~l~~~Ge 136 (149)
||-|..+.+|-|..+-+.|..+ .+.|-.+.... . +|+.+|.+ +.+-.-+....
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~d 229 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTED 229 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHH
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHH
Confidence 3445569999999999998753 23444343322 1 25544433 32222233446
Q ss_pred cHHHHHhhhhc
Q 032016 137 LEPLLSEAKSA 147 (149)
Q Consensus 137 L~~lL~~~ga~ 147 (149)
|...|.+.|++
T Consensus 230 lE~~L~~~G~l 240 (265)
T PF02114_consen 230 LEAFLIEYGVL 240 (265)
T ss_dssp HHHHHHTTTSS
T ss_pred HHHHHHHcCCC
Confidence 88899888886
No 305
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=32.30 E-value=24 Score=29.65 Aligned_cols=41 Identities=15% Similarity=0.410 Sum_probs=28.7
Q ss_pred HHhcCCCEEEEeeCCCccHHHHHHHHHh-------cCCCcEEEEeCCC
Q 032016 77 KTVSENPVVVYSKTWCSYSSEVKLLFKR-------LGVEPLVIELDEM 117 (149)
Q Consensus 77 ~~i~~~~VvIFsK~~CPfC~kak~lL~~-------~gi~y~~vdid~~ 117 (149)
++.+..=.+.|..+|||-|.-.+..|.+ +||..-++|+...
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n 83 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN 83 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec
Confidence 3444444678999999999999988875 3445556776543
No 306
>PRK10542 glutathionine S-transferase; Provisional
Probab=31.80 E-value=58 Score=24.54 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.9
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+|..+. +.+.++.-+|.+.|++|+.+.++
T Consensus 3 l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~ 31 (201)
T PRK10542 3 LFYKPG-ACSLASHITLRESGLDFTLVSVD 31 (201)
T ss_pred eeeccc-HHHHHHHHHHHHcCCCceEEEee
Confidence 455432 34777888899999999887665
No 307
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=30.56 E-value=38 Score=26.13 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=14.3
Q ss_pred EEeeCCCccHHHHHHHHHh
Q 032016 86 VYSKTWCSYSSEVKLLFKR 104 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~ 104 (149)
+|+-|.|++|......+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~k 20 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRK 20 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHH
Confidence 6899999999988777765
No 308
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=30.47 E-value=30 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEeCCCCCeEec
Q 032016 91 WCSYSSEVKLLFKRLGVEPLVIELDEMGGKHIG 123 (149)
Q Consensus 91 ~CPfC~kak~lL~~~gi~y~~vdid~~~G~~IG 123 (149)
.|.--..++++.+++||+.+++.+-..+|+.++
T Consensus 28 ~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~ 60 (81)
T PF14451_consen 28 PFDGGATVKDVIESLGVPHTEVGLILVNGRPVD 60 (81)
T ss_pred ecCCCCcHHHHHHHcCCChHHeEEEEECCEECC
Confidence 455566789999999999988877555555543
No 309
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=29.71 E-value=1.1e+02 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=23.1
Q ss_pred hcCCCEEEEeeC-CCccHHHHHHHHHhcCCC
Q 032016 79 VSENPVVVYSKT-WCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 79 i~~~~VvIFsK~-~CPfC~kak~lL~~~gi~ 108 (149)
-+..+|++|... .|....++...|.+.|.+
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 355789999764 466778888889999985
No 310
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=29.40 E-value=16 Score=26.29 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=7.2
Q ss_pred eCCCccHHH
Q 032016 89 KTWCSYSSE 97 (149)
Q Consensus 89 K~~CPfC~k 97 (149)
+++||||++
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 478999974
No 311
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=28.47 E-value=70 Score=26.08 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.8
Q ss_pred EeeCCCccHHHHHHHHHhcCCC
Q 032016 87 YSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 87 FsK~~CPfC~kak~lL~~~gi~ 108 (149)
+-...||.++++|+.|++.|+.
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCC
Confidence 3346799999999999999986
No 312
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=28.21 E-value=58 Score=26.26 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=17.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLG 106 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~g 106 (149)
|.+|+..+|.-|=-|-++|.++.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~ 24 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELA 24 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhh
Confidence 67999999999999999998754
No 313
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=28.05 E-value=55 Score=29.72 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=40.4
Q ss_pred ccccccccchhcccCceeEeeccCccchHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCCcEEE
Q 032016 42 SRTSLSVNGRRRRYGAVSVQAMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVI 112 (149)
Q Consensus 42 ~~~~l~i~~~~~~~g~~~~~~~~s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~v 112 (149)
..|++|.-||.+ +|+..+-...-....++.+.|-+.++ .-|-++. ..-++++|+..|+++...
T Consensus 370 ~~pglY~sGW~k-~GP~GvIattm~dAf~v~d~I~qD~~----~~~~~ss---~~~l~~~l~~~~v~~v~w 432 (468)
T KOG1800|consen 370 CSPGLYASGWVK-HGPTGVIATTMQDAFEVADTIVQDLK----IQFLDSS---SAGLEALLESRGVRVVSW 432 (468)
T ss_pred cCCceEEEeeec-cCCcceeeehhhhHHHHHHHHHHHHH----Hhhccch---HHHHHHhhhccCCceecc
Confidence 679999999964 67776554333333445555555554 2233333 788999999999986543
No 314
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=27.79 E-value=28 Score=29.96 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=30.8
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
.++|..|+.-.+++++=.+.+.||.|+.++++-
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l 59 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSL 59 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccC
Confidence 789999999999999999999999999988864
No 315
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=27.72 E-value=1.7e+02 Score=21.48 Aligned_cols=39 Identities=5% Similarity=0.040 Sum_probs=24.0
Q ss_pred HHhcCCC--EEEEee--CCCc---cHHHHHHHHHhc--CCCcEEEEeC
Q 032016 77 KTVSENP--VVVYSK--TWCS---YSSEVKLLFKRL--GVEPLVIELD 115 (149)
Q Consensus 77 ~~i~~~~--VvIFsK--~~CP---fC~kak~lL~~~--gi~y~~vdid 115 (149)
+.++.++ +|.|.. |||+ +|++...-+... .|.+-.||.+
T Consensus 13 ~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~ 60 (116)
T cd03007 13 KVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIK 60 (116)
T ss_pred HHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecc
Confidence 3445555 567888 8888 888776555432 2445556664
No 316
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.98 E-value=1.1e+02 Score=26.57 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=32.3
Q ss_pred HHHHHHHhcCC---CEEEEeeCCCccHH----HHHHHHHhcCCCcEEEEeCCC
Q 032016 72 EESVKKTVSEN---PVVVYSKTWCSYSS----EVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 72 ~~~v~~~i~~~---~VvIFsK~~CPfC~----kak~lL~~~gi~y~~vdid~~ 117 (149)
.+.+.+++++. -||.++...|.... .+++.|++.|||+-.+|.|..
T Consensus 302 ~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 302 YDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCC
Confidence 34455555443 36666667786654 578889999999999998754
No 317
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.92 E-value=64 Score=30.36 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=42.3
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCCe-EeccchhHHHHHHcCCcH
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGGK-HIGGCTDTVKLYRKGELE 138 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G~-~IGG~ddl~~l~~~GeL~ 138 (149)
.+|++||.++ =.++++++..++ .|..+++|...|+ .-.+.|++++.++.|++-
T Consensus 387 ~PP~lIfVQs----~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 387 KPPVLIFVQS----KERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred CCCeEEEEec----HHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 4689999997 678999999887 5677777766555 557789999999999874
No 318
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=26.77 E-value=80 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEEee-----CCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 73 ESVKKTVSENPVVVYSK-----TWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 73 ~~v~~~i~~~~VvIFsK-----~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
--|..+...+-+||=.. +.|-||.-+++.|...|.+.+.+++
T Consensus 208 PiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~ 254 (583)
T KOG2454|consen 208 PIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQV 254 (583)
T ss_pred HHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhe
Confidence 34567778888876544 7899999999999999998876665
No 319
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.75 E-value=1.5e+02 Score=26.33 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=42.9
Q ss_pred ccCc-eeEeeccCccchHHHHHHHHHhcCCCEEEEeeCCCccHH-HHHHHHHhcCCCcEEEEeCCC
Q 032016 54 RYGA-VSVQAMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSS-EVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 54 ~~g~-~~~~~~~s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~-kak~lL~~~gi~y~~vdid~~ 117 (149)
+.|- +....-....-..+.+.+.++++.+.+-|..-.+=||.. ...+-|++.|+++..+++.+.
T Consensus 338 ~~G~~l~~~~g~~iD~~~v~~~i~~~~~~~~~~v~~i~yD~~~a~~~~~~l~~~g~~~~~~~v~Q~ 403 (477)
T PF03354_consen 338 DEGWCLTITPGNVIDYDEVEEWIIELIDKYGFDVQEIGYDPWNATQFVQRLEEEGFDYPMVEVRQG 403 (477)
T ss_pred HcCCeEeccCCCcccHHHHHHHHHHHHHhcCcCccEEEEehhhhHHHHHHHHhccCcceEEEeccc
Confidence 3455 554444445556788899999988655555555555555 457778889988877887654
No 320
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.38 E-value=71 Score=19.70 Aligned_cols=26 Identities=23% Similarity=0.518 Sum_probs=17.0
Q ss_pred CCCccHH-HHHHHHHhc-CCCcEEEEeC
Q 032016 90 TWCSYSS-EVKLLFKRL-GVEPLVIELD 115 (149)
Q Consensus 90 ~~CPfC~-kak~lL~~~-gi~y~~vdid 115 (149)
-.|+.|. ++++.|.+. ||.-..+|+.
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~~v~vd~~ 34 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVKSVKVDLE 34 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEEEEEEETT
T ss_pred cccHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 4799998 566677775 7754444444
No 321
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=26.14 E-value=1.3e+02 Score=20.56 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=27.3
Q ss_pred hHHHHHHHHHh--cCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 69 SRLEESVKKTV--SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 69 ~~~~~~v~~~i--~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+++++.+.+.- +..+|++|... +..+.++-..|+..|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~-g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGS-GVTACVLLLALELLGYK 104 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCc-HHHHHHHHHHHHHcCCC
Confidence 34445555432 45689999765 67888888889999985
No 322
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=25.92 E-value=1.4e+02 Score=18.90 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=22.8
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+..+|++|. ..+..+.++...|.+.|.+
T Consensus 55 ~~~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 55 KDKPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 456788888 5677888999999999986
No 323
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.78 E-value=1.2e+02 Score=23.98 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 85 VVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 85 vIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
++=+++--+.-+++.+.|+++||+|+..-+..+
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAH 40 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAH 40 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEEEEEecc
Confidence 344456677888999999999999988777655
No 324
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=25.77 E-value=1.6e+02 Score=20.47 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=27.3
Q ss_pred hHHHHHHHH--HhcCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 69 SRLEESVKK--TVSENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 69 ~~~~~~v~~--~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+++++.+.. .-+..+|++|....+....++..+|...|++
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 344444443 2235678888777677788888899999976
No 325
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=25.11 E-value=98 Score=26.90 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCC---EEEEeeCCCccH----HHHHHHHHhcCCCcEEEEeCC
Q 032016 72 EESVKKTVSENP---VVVYSKTWCSYS----SEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 72 ~~~v~~~i~~~~---VvIFsK~~CPfC----~kak~lL~~~gi~y~~vdid~ 116 (149)
.+.+.+++++.+ ||.+..-.|..- ..+++.|++.||||-.+|++.
T Consensus 310 ~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 310 GKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 345666665543 566666667553 377889999999999998764
No 326
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=24.49 E-value=60 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=16.4
Q ss_pred EEeeCCCccHHHHHHHHHhcCCCcEEEEeC
Q 032016 86 VYSKTWCSYSSEVKLLFKRLGVEPLVIELD 115 (149)
Q Consensus 86 IFsK~~CPfC~kak~lL~~~gi~y~~vdid 115 (149)
+|+...=--+..++.+|++.||++...+-.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 444444445678899999999998876543
No 327
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=24.39 E-value=2.6e+02 Score=20.22 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhcCC-CEEEEee--------CCCccHHHHHHHHHhc-CCC
Q 032016 68 GSRLEESVKKTVSEN-PVVVYSK--------TWCSYSSEVKLLFKRL-GVE 108 (149)
Q Consensus 68 ~~~~~~~v~~~i~~~-~VvIFsK--------~~CPfC~kak~lL~~~-gi~ 108 (149)
+..+..+++++++.. +++-|+. +.||+=.+.++.+++. |++
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~ 101 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIE 101 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCC
Confidence 677888888888553 5665554 2899999999999887 875
No 328
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=23.90 E-value=67 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCC-cEEEEeCCCCCeEeccchhHHHH
Q 032016 96 SEVKLLFKRLGVE-PLVIELDEMGGKHIGGCTDTVKL 131 (149)
Q Consensus 96 ~kak~lL~~~gi~-y~~vdid~~~G~~IGG~ddl~~l 131 (149)
..+.-+|++.||. .+.+=+.-.+-.||||.+++.+-
T Consensus 77 ~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~ 113 (293)
T COG2333 77 DVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKT 113 (293)
T ss_pred eeehhhHhHcCCccccEEEeccCCccccCCHHHHHhh
Confidence 4556789999997 66666666678999999999884
No 329
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=23.73 E-value=2.3e+02 Score=18.92 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=25.1
Q ss_pred HHHHHHHHhc---CCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 71 LEESVKKTVS---ENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 71 ~~~~v~~~i~---~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+.+.++.+.. ..+|++|... +..+.++...|.+.|++
T Consensus 45 ~~~~~~~~~~~~~~~~vv~~c~~-g~rs~~~~~~l~~~G~~ 84 (101)
T cd01528 45 IPERSKELDSDNPDKDIVVLCHH-GGRSMQVAQWLLRQGFE 84 (101)
T ss_pred HHHHHHHhcccCCCCeEEEEeCC-CchHHHHHHHHHHcCCc
Confidence 3344444433 5689998765 56778888888888875
No 330
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.68 E-value=1.7e+02 Score=25.88 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeC-----CCCCeEeccchhHHHHHHc
Q 032016 81 ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELD-----EMGGKHIGGCTDTVKLYRK 134 (149)
Q Consensus 81 ~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid-----~~~G~~IGG~ddl~~l~~~ 134 (149)
..-|..|-. -.--+.+-++|++.||.|.-+-|- .++..+-||..|+..+.+-
T Consensus 53 ~~Gvkf~d~--ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~iei 109 (403)
T COG3867 53 NSGVKFFDT--NGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEI 109 (403)
T ss_pred HcCceEEcc--CChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHH
Confidence 344555532 334567889999999999776663 3345777888888877653
No 331
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=23.37 E-value=1.2e+02 Score=20.63 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=24.1
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEe
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIEL 114 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdi 114 (149)
|++++.++|+=..-++.+.+..++++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 5678888888888888888888876655554
No 332
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=23.13 E-value=1.3e+02 Score=21.35 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=30.0
Q ss_pred CEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCC
Q 032016 83 PVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEM 117 (149)
Q Consensus 83 ~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~ 117 (149)
+|++++.++|+=..-++.+.+..+.++..+.+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~ 35 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSD 35 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccc
Confidence 48899999999999999999999888888887654
No 333
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=23.04 E-value=28 Score=21.62 Aligned_cols=6 Identities=17% Similarity=0.927 Sum_probs=4.6
Q ss_pred CccHHH
Q 032016 92 CSYSSE 97 (149)
Q Consensus 92 CPfC~k 97 (149)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 888864
No 334
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=22.44 E-value=1.2e+02 Score=24.32 Aligned_cols=51 Identities=22% Similarity=0.435 Sum_probs=34.2
Q ss_pred CCCccHH----HHHHHHHhcCCCcEEEEeCCCCCeEeccchhHHHHHHcCCcHHHH
Q 032016 90 TWCSYSS----EVKLLFKRLGVEPLVIELDEMGGKHIGGCTDTVKLYRKGELEPLL 141 (149)
Q Consensus 90 ~~CPfC~----kak~lL~~~gi~y~~vdid~~~G~~IGG~ddl~~l~~~GeL~~lL 141 (149)
|.|+-.+ .+++.|...||++.+++=-+.+|+.|- ...+.++.++|++.++-
T Consensus 117 P~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~IS-AS~VR~~l~~~~~~~i~ 171 (182)
T PF08218_consen 117 PFSPVTRIYNEAMKEILPPYGIEVVEIPRKEINGEPIS-ASRVRKLLKEGDFEEIK 171 (182)
T ss_pred CCCHHHHHHHHHHHHhccccCCEEEEEecccCCCcEEc-HHHHHHHHHcCCHHHHH
Confidence 6676554 556666677877666654445566664 45789999999986543
No 335
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=22.14 E-value=1e+02 Score=27.73 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=36.3
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCCCCCeEeccch
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDEMGGKHIGGCT 126 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~~~G~~IGG~d 126 (149)
+.||+-|+|+=...++.+..+.|+++..++..+.-++++|...
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsE 193 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPG 193 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHH
Confidence 4688999999999999999999999888887666677777654
No 336
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.55 E-value=2.2e+02 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=25.7
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHhcC--CCcEEEEe
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKRLG--VEPLVIEL 114 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~~g--i~y~~vdi 114 (149)
++...||+.-..||+|...+++|.++. -.+...++
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~ 42 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAAL 42 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEec
Confidence 445667777889999999999998763 34555554
No 337
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.55 E-value=3.2e+02 Score=22.38 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=36.5
Q ss_pred eccCccchHHHHHHHHHhcCCCEEEEeeCCCccHHHHHHHHHhcCCC-cEEEEeCCCCC----eEeccchhHHHHHHcC
Q 032016 62 AMASSYGSRLEESVKKTVSENPVVVYSKTWCSYSSEVKLLFKRLGVE-PLVIELDEMGG----KHIGGCTDTVKLYRKG 135 (149)
Q Consensus 62 ~~~s~~~~~~~~~v~~~i~~~~VvIFsK~~CPfC~kak~lL~~~gi~-y~~vdid~~~G----~~IGG~ddl~~l~~~G 135 (149)
.+-.+-..++-+++....... =.++...+...||+ +.++++|.+.+ ++|+|-. +.++..++
T Consensus 28 i~K~YR~p~LD~klrr~Rt~~------------Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I~G~~-lkd~l~~~ 93 (204)
T COG3642 28 IPKRYRHPELDEKLRRERTRR------------EARILAKAREAGVPVPIVYDVDPDNGLIVMEYIEGEL-LKDALEEA 93 (204)
T ss_pred cCcccCChHHHHHHHHHHHHH------------HHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEeCChh-HHHHHHhc
Confidence 444455556666665543222 13444556678997 57899998875 7888864 45444444
No 338
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=21.37 E-value=2.2e+02 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCCEEEEe-eCCCccHHHH-HHHHHhcCCCc-EEEEe
Q 032016 81 ENPVVVYS-KTWCSYSSEV-KLLFKRLGVEP-LVIEL 114 (149)
Q Consensus 81 ~~~VvIFs-K~~CPfC~ka-k~lL~~~gi~y-~~vdi 114 (149)
...++||. ++-|+||+.. .++.++.|++. ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 34455555 5889999965 45557799974 44443
No 339
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=21.20 E-value=1.5e+02 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=21.8
Q ss_pred cCCCEEEEeeCCCccHHHHHHHHHhcCCC
Q 032016 80 SENPVVVYSKTWCSYSSEVKLLFKRLGVE 108 (149)
Q Consensus 80 ~~~~VvIFsK~~CPfC~kak~lL~~~gi~ 108 (149)
+..+|++|... +..+.++...|+..|++
T Consensus 60 ~~~~ivv~c~~-g~~s~~~~~~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCAS-GWRSALAGKTLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCC-CCcHHHHHHHHHHcChH
Confidence 45678999754 67788888899999875
No 340
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=21.19 E-value=1.2e+02 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHhc--CCCEEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC
Q 032016 66 SYGSRLEESVKKTVS--ENPVVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE 116 (149)
Q Consensus 66 ~~~~~~~~~v~~~i~--~~~VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~ 116 (149)
...++..+.|.+++. ..+-||.+|+.--+=..+.+.|++.|++.-+-|+.+
T Consensus 85 ~~aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE 137 (459)
T COG1139 85 KDAEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGE 137 (459)
T ss_pred CCHHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHH
Confidence 345778888889987 678899999999999999999999999877777643
No 341
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=21.02 E-value=3.7e+02 Score=20.78 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.5
Q ss_pred EEEEeeCCCccHHHHHHHHHhcCCCcEEEEeCC------CCCeEecc
Q 032016 84 VVVYSKTWCSYSSEVKLLFKRLGVEPLVIELDE------MGGKHIGG 124 (149)
Q Consensus 84 VvIFsK~~CPfC~kak~lL~~~gi~y~~vdid~------~~G~~IGG 124 (149)
|+++.-..|.|...+++.|+..|++++++.++. .++-+++|
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~G 51 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPG 51 (200)
T ss_pred EEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECC
Confidence 455556789999999999999998887776643 35666644
No 342
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=20.76 E-value=1.5e+02 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.1
Q ss_pred CCEEEEee-CCCccHHHHHHHHHh
Q 032016 82 NPVVVYSK-TWCSYSSEVKLLFKR 104 (149)
Q Consensus 82 ~~VvIFsK-~~CPfC~kak~lL~~ 104 (149)
..|.+|+. +.|+-|.-+.+-|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 57889998 889999988777665
No 343
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=20.03 E-value=4.1e+02 Score=22.51 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhc---CCCEEEEeeCCC------ccHHHHHHHHHhcCCCcEEEEeCCCCCeEeccchhHHHHHHcCCcHH
Q 032016 69 SRLEESVKKTVS---ENPVVVYSKTWC------SYSSEVKLLFKRLGVEPLVIELDEMGGKHIGGCTDTVKLYRKGELEP 139 (149)
Q Consensus 69 ~~~~~~v~~~i~---~~~VvIFsK~~C------PfC~kak~lL~~~gi~y~~vdid~~~G~~IGG~ddl~~l~~~GeL~~ 139 (149)
-+.++++++++. ..+.++-+.+++ +-=...+++.+++|++..+++.-..+|..| ....+.++.+.|++..
T Consensus 99 ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~I-SST~IR~~I~~G~i~~ 177 (305)
T PRK05627 99 LSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERV-SSTAIRQALAEGDLEL 177 (305)
T ss_pred CCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcC-chHHHHHHHHcCCHHH
Confidence 357888887542 346777777775 234566777777888766665544455555 4556788888888764
Q ss_pred H
Q 032016 140 L 140 (149)
Q Consensus 140 l 140 (149)
.
T Consensus 178 A 178 (305)
T PRK05627 178 A 178 (305)
T ss_pred H
Confidence 3
Done!