Query 032018
Match_columns 148
No_of_seqs 110 out of 476
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4098 Molecular chaperone Pr 100.0 3.3E-36 7.1E-41 225.8 11.7 125 1-125 1-127 (140)
2 TIGR02338 gimC_beta prefoldin, 99.9 3.4E-26 7.5E-31 167.0 11.5 107 12-118 2-108 (110)
3 COG1382 GimC Prefoldin, chaper 99.9 3.4E-23 7.4E-28 153.9 11.4 113 9-121 2-114 (119)
4 cd00632 Prefoldin_beta Prefold 99.9 4.9E-23 1.1E-27 149.0 11.0 100 16-115 2-101 (105)
5 KOG3478 Prefoldin subunit 6, K 99.9 4.5E-23 9.7E-28 151.0 10.0 102 13-114 5-106 (120)
6 PRK09343 prefoldin subunit bet 99.9 9.3E-23 2E-27 151.7 11.1 112 10-121 4-115 (121)
7 PF01920 Prefoldin_2: Prefoldi 99.9 1.6E-20 3.4E-25 133.6 14.6 105 16-120 1-105 (106)
8 cd00890 Prefoldin Prefoldin is 99.6 6.7E-14 1.4E-18 102.6 13.5 100 16-115 2-125 (129)
9 PRK03947 prefoldin subunit alp 99.6 6.9E-14 1.5E-18 105.2 13.4 105 11-115 4-132 (140)
10 TIGR00293 prefoldin, archaeal 99.4 4.9E-12 1.1E-16 93.4 13.7 100 16-115 2-124 (126)
11 cd00584 Prefoldin_alpha Prefol 99.4 5.8E-12 1.3E-16 93.3 12.6 100 16-115 2-125 (129)
12 COG1730 GIM5 Predicted prefold 99.1 1.3E-09 2.8E-14 83.8 12.9 105 12-116 5-133 (145)
13 PRK14011 prefoldin subunit alp 99.1 2.3E-09 5E-14 82.3 12.9 108 13-120 3-131 (144)
14 PRK01203 prefoldin subunit alp 98.7 1E-06 2.2E-11 66.8 13.1 96 16-111 3-121 (130)
15 PF02996 Prefoldin: Prefoldin 98.5 4.2E-07 9.1E-12 66.0 7.7 91 25-115 1-115 (120)
16 KOG1760 Molecular chaperone Pr 97.3 0.011 2.5E-07 44.6 12.6 99 15-113 18-117 (131)
17 KOG3048 Molecular chaperone Pr 97.0 0.055 1.2E-06 41.9 13.8 117 2-118 2-142 (153)
18 PRK03947 prefoldin subunit alp 96.7 0.0076 1.6E-07 45.1 6.9 99 18-116 4-126 (140)
19 KOG3501 Molecular chaperone Pr 96.6 0.02 4.2E-07 42.2 7.9 99 17-115 7-105 (114)
20 TIGR00293 prefoldin, archaeal 96.0 0.032 6.9E-07 40.9 6.6 94 23-116 2-118 (126)
21 KOG3313 Molecular chaperone Pr 95.9 0.17 3.7E-06 40.4 10.7 95 16-110 40-161 (187)
22 cd00632 Prefoldin_beta Prefold 94.5 0.15 3.3E-06 36.5 6.1 95 14-111 7-104 (105)
23 PF13758 Prefoldin_3: Prefoldi 94.2 0.24 5.3E-06 36.0 6.5 43 65-107 56-98 (99)
24 COG1730 GIM5 Predicted prefold 93.9 0.41 9E-06 36.9 7.8 97 19-115 5-125 (145)
25 PRK09343 prefoldin subunit bet 93.9 0.35 7.6E-06 35.8 7.1 99 14-115 15-116 (121)
26 PRK11637 AmiB activator; Provi 93.5 1.5 3.3E-05 38.4 11.5 88 18-120 45-132 (428)
27 PRK11637 AmiB activator; Provi 92.4 2.9 6.3E-05 36.7 11.8 85 13-112 47-131 (428)
28 PF01920 Prefoldin_2: Prefoldi 92.3 1.1 2.4E-05 31.1 7.5 95 15-109 7-101 (106)
29 TIGR02338 gimC_beta prefoldin, 92.1 0.95 2.1E-05 32.7 7.1 94 14-110 11-107 (110)
30 PRK14011 prefoldin subunit alp 91.9 1.2 2.5E-05 34.3 7.7 96 20-115 3-119 (144)
31 PF08946 Osmo_CC: Osmosensory 91.8 0.44 9.5E-06 30.0 4.3 41 74-114 2-42 (46)
32 PRK03918 chromosome segregatio 90.9 5.6 0.00012 37.5 12.7 87 23-112 401-487 (880)
33 PRK02224 chromosome segregatio 90.9 3 6.5E-05 39.5 10.9 97 15-112 407-503 (880)
34 PF13118 DUF3972: Protein of u 90.5 1.1 2.3E-05 34.0 6.1 53 64-116 58-124 (126)
35 cd00890 Prefoldin Prefoldin is 90.4 5 0.00011 28.7 11.5 94 15-110 8-127 (129)
36 PRK01156 chromosome segregatio 90.1 6.2 0.00013 37.6 12.3 93 18-114 414-506 (895)
37 COG1382 GimC Prefoldin, chaper 88.8 3.2 7E-05 31.1 7.5 96 14-112 14-112 (119)
38 PRK01203 prefoldin subunit alp 88.6 3.2 6.9E-05 31.5 7.5 94 24-117 4-120 (130)
39 PF04949 Transcrip_act: Transc 88.0 11 0.00024 29.5 11.6 86 16-116 30-123 (159)
40 PF12718 Tropomyosin_1: Tropom 86.7 7.8 0.00017 29.5 8.8 34 21-54 36-69 (143)
41 PF14712 Snapin_Pallidin: Snap 85.3 9.8 0.00021 26.1 9.0 79 12-111 13-91 (92)
42 PRK03918 chromosome segregatio 84.8 6.8 0.00015 36.9 9.2 20 81-100 311-330 (880)
43 PF08657 DASH_Spc34: DASH comp 84.6 9.1 0.0002 32.1 8.9 48 17-64 177-224 (259)
44 PF04102 SlyX: SlyX; InterPro 84.2 5.3 0.00012 26.6 6.1 42 75-116 2-43 (69)
45 PRK00736 hypothetical protein; 83.5 5.9 0.00013 26.5 6.0 43 75-117 3-45 (68)
46 KOG3047 Predicted transcriptio 83.1 19 0.00042 27.7 11.3 100 13-112 30-140 (157)
47 PRK00295 hypothetical protein; 82.7 6.7 0.00015 26.3 6.0 42 75-116 3-44 (68)
48 KOG3335 Predicted coiled-coil 81.3 12 0.00026 30.0 7.8 59 59-117 75-139 (181)
49 PRK04325 hypothetical protein; 81.1 7.7 0.00017 26.4 6.0 42 75-116 7-48 (74)
50 PF09006 Surfac_D-trimer: Lung 80.6 7.6 0.00017 24.5 5.3 45 23-67 2-46 (46)
51 PF09726 Macoilin: Transmembra 79.9 20 0.00044 34.0 10.3 83 25-114 493-575 (697)
52 PF08172 CASP_C: CASP C termin 79.7 31 0.00067 28.7 10.2 97 16-112 2-114 (248)
53 PF08614 ATG16: Autophagy prot 78.9 8.5 0.00018 30.3 6.5 40 16-55 70-109 (194)
54 PF02403 Seryl_tRNA_N: Seryl-t 78.5 21 0.00045 25.2 10.5 75 18-111 27-101 (108)
55 PF15070 GOLGA2L5: Putative go 78.2 39 0.00085 31.7 11.4 76 13-94 29-104 (617)
56 PRK02793 phi X174 lysis protei 77.8 12 0.00025 25.4 6.0 42 75-116 6-47 (72)
57 PRK04863 mukB cell division pr 77.7 19 0.00041 37.2 9.8 95 18-118 388-483 (1486)
58 PF07106 TBPIP: Tat binding pr 77.6 29 0.00063 26.5 10.6 81 22-115 74-162 (169)
59 PRK04406 hypothetical protein; 77.5 12 0.00025 25.7 5.9 42 75-116 9-50 (75)
60 PF03961 DUF342: Protein of un 77.2 24 0.00052 31.3 9.4 78 24-110 331-408 (451)
61 TIGR02231 conserved hypothetic 77.1 55 0.0012 29.4 12.4 101 10-115 68-169 (525)
62 PRK02119 hypothetical protein; 76.5 13 0.00028 25.2 6.0 42 75-116 7-48 (73)
63 KOG1029 Endocytic adaptor prot 76.1 21 0.00046 34.9 9.1 34 75-108 540-580 (1118)
64 PF05377 FlaC_arch: Flagella a 75.0 13 0.00028 24.3 5.3 35 80-114 3-37 (55)
65 PRK10884 SH3 domain-containing 74.2 45 0.00098 26.9 10.9 78 19-115 92-170 (206)
66 PHA02562 46 endonuclease subun 73.8 43 0.00093 29.8 10.2 75 18-110 172-246 (562)
67 PHA01750 hypothetical protein 73.6 19 0.00042 24.6 6.1 44 72-115 29-73 (75)
68 cd00584 Prefoldin_alpha Prefol 73.6 32 0.00069 24.9 10.9 93 23-115 2-118 (129)
69 PF04977 DivIC: Septum formati 73.1 23 0.00049 23.1 7.0 48 19-66 23-78 (80)
70 PHA02562 46 endonuclease subun 73.1 62 0.0013 28.8 11.0 33 76-108 298-330 (562)
71 PF09738 DUF2051: Double stran 73.0 26 0.00056 30.1 8.2 96 18-115 145-250 (302)
72 PRK10884 SH3 domain-containing 72.6 44 0.00095 27.0 9.1 13 31-43 97-109 (206)
73 KOG0250 DNA repair protein RAD 72.5 46 0.001 33.3 10.6 42 74-115 391-432 (1074)
74 PRK02224 chromosome segregatio 72.3 48 0.001 31.5 10.6 37 74-110 603-639 (880)
75 PF03962 Mnd1: Mnd1 family; I 71.4 49 0.0011 26.2 10.2 36 22-57 64-99 (188)
76 PF05667 DUF812: Protein of un 71.3 56 0.0012 30.6 10.6 87 15-114 442-528 (594)
77 TIGR00606 rad50 rad50. This fa 71.2 35 0.00077 34.4 9.9 45 71-115 882-926 (1311)
78 PRK05771 V-type ATP synthase s 69.3 97 0.0021 28.7 12.5 39 18-56 91-129 (646)
79 PF12718 Tropomyosin_1: Tropom 69.3 47 0.001 25.2 9.2 38 18-55 26-63 (143)
80 PF05529 Bap31: B-cell recepto 69.0 52 0.0011 25.6 10.7 41 75-115 152-192 (192)
81 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.9 44 0.00096 24.7 10.4 39 77-115 84-122 (132)
82 PF05667 DUF812: Protein of un 68.0 14 0.0003 34.5 5.9 99 17-115 325-425 (594)
83 PRK00846 hypothetical protein; 66.7 29 0.00063 24.0 6.0 43 74-116 10-52 (77)
84 PF06818 Fez1: Fez1; InterPro 66.6 63 0.0014 26.3 8.8 90 13-102 66-156 (202)
85 PRK14127 cell division protein 66.2 29 0.00062 25.5 6.2 44 72-115 25-68 (109)
86 PF08317 Spc7: Spc7 kinetochor 66.0 55 0.0012 27.8 8.8 90 11-122 207-300 (325)
87 TIGR03017 EpsF chain length de 65.9 9.9 0.00022 33.0 4.4 51 68-118 155-205 (444)
88 smart00787 Spc7 Spc7 kinetocho 65.8 86 0.0019 26.9 11.3 23 99-121 272-294 (312)
89 PF13093 FTA4: Kinetochore com 65.7 33 0.00072 27.8 7.1 72 15-101 137-208 (213)
90 PF00435 Spectrin: Spectrin re 65.6 24 0.00052 23.0 5.4 35 9-43 30-64 (105)
91 KOG2264 Exostosin EXT1L [Signa 64.1 59 0.0013 31.0 9.1 42 15-56 81-122 (907)
92 PRK05431 seryl-tRNA synthetase 63.4 1.1E+02 0.0024 27.2 11.1 78 19-115 27-104 (425)
93 PF04977 DivIC: Septum formati 63.3 18 0.00038 23.6 4.3 37 19-55 16-52 (80)
94 PLN02678 seryl-tRNA synthetase 62.5 1.2E+02 0.0026 27.4 12.8 79 18-115 31-109 (448)
95 COG3883 Uncharacterized protei 61.4 1E+02 0.0022 26.1 10.2 78 15-121 33-110 (265)
96 TIGR00414 serS seryl-tRNA synt 61.1 1.2E+02 0.0026 26.9 10.9 80 18-115 28-107 (418)
97 PF08317 Spc7: Spc7 kinetochor 60.9 1E+02 0.0022 26.1 12.3 40 19-58 169-208 (325)
98 PF08656 DASH_Dad3: DASH compl 60.2 13 0.00028 25.9 3.2 46 12-57 2-47 (78)
99 PF10359 Fmp27_WPPW: RNA pol I 60.1 1.1E+02 0.0023 27.6 9.9 70 28-117 164-233 (475)
100 PF05816 TelA: Toxic anion res 60.1 20 0.00043 30.7 5.1 103 13-117 84-195 (333)
101 PF06160 EzrA: Septation ring 60.0 65 0.0014 29.6 8.7 90 17-116 57-147 (560)
102 PF11471 Sugarporin_N: Maltopo 59.9 20 0.00044 23.5 4.0 30 81-110 29-58 (60)
103 PRK05771 V-type ATP synthase s 59.2 65 0.0014 29.9 8.6 39 74-112 83-121 (646)
104 PF00170 bZIP_1: bZIP transcri 59.1 45 0.00098 21.4 6.5 39 76-114 25-63 (64)
105 PF04912 Dynamitin: Dynamitin 59.0 46 0.001 28.9 7.2 42 74-115 309-360 (388)
106 PF10146 zf-C4H2: Zinc finger- 58.7 1E+02 0.0022 25.4 11.5 43 75-117 65-108 (230)
107 PRK01156 chromosome segregatio 58.6 74 0.0016 30.4 9.1 31 27-57 249-279 (895)
108 TIGR02977 phageshock_pspA phag 58.4 94 0.002 24.8 9.7 96 15-115 33-137 (219)
109 PRK11519 tyrosine kinase; Prov 58.2 15 0.00033 34.5 4.4 52 65-116 248-299 (719)
110 TIGR03752 conj_TIGR03752 integ 58.1 1.1E+02 0.0024 28.0 9.6 84 12-109 58-141 (472)
111 PF03148 Tektin: Tektin family 57.9 1.2E+02 0.0025 26.6 9.5 41 14-54 252-292 (384)
112 TIGR00634 recN DNA repair prot 57.8 1E+02 0.0022 28.2 9.5 47 13-59 161-207 (563)
113 PF11285 DUF3086: Protein of u 57.6 26 0.00057 29.8 5.2 34 75-108 2-35 (283)
114 smart00338 BRLZ basic region l 57.6 48 0.0011 21.3 6.3 40 76-115 25-64 (65)
115 PRK09841 cryptic autophosphory 57.2 16 0.00035 34.4 4.4 52 66-117 249-300 (726)
116 PRK09039 hypothetical protein; 56.7 1.3E+02 0.0028 25.9 9.8 39 17-55 127-165 (343)
117 KOG0996 Structural maintenance 56.6 1.7E+02 0.0037 30.0 11.2 22 76-97 857-878 (1293)
118 TIGR03185 DNA_S_dndD DNA sulfu 56.1 1.7E+02 0.0036 27.2 10.7 25 25-49 389-413 (650)
119 PF13514 AAA_27: AAA domain 56.1 50 0.0011 32.7 7.7 34 20-53 736-769 (1111)
120 PRK00888 ftsB cell division pr 55.8 74 0.0016 22.9 6.8 52 17-68 31-90 (105)
121 PF10393 Matrilin_ccoil: Trime 55.5 16 0.00035 23.0 2.8 30 71-100 17-46 (47)
122 PF04201 TPD52: Tumour protein 55.2 51 0.0011 26.0 6.2 40 79-118 31-70 (162)
123 PF05103 DivIVA: DivIVA protei 54.9 6.8 0.00015 28.2 1.2 39 17-55 29-67 (131)
124 PF04156 IncA: IncA protein; 54.7 66 0.0014 24.7 6.8 31 18-48 86-116 (191)
125 COG1579 Zn-ribbon protein, pos 54.4 1.3E+02 0.0027 25.1 9.2 41 76-116 109-149 (239)
126 PF00261 Tropomyosin: Tropomyo 54.1 1.2E+02 0.0025 24.6 10.9 42 74-115 180-221 (237)
127 PF04508 Pox_A_type_inc: Viral 53.6 20 0.00043 19.5 2.6 20 28-47 2-21 (23)
128 PF12325 TMF_TATA_bd: TATA ele 53.1 92 0.002 23.1 11.1 40 7-46 10-49 (120)
129 TIGR02231 conserved hypothetic 53.1 1.4E+02 0.003 26.9 9.5 95 18-116 69-163 (525)
130 TIGR01010 BexC_CtrB_KpsE polys 52.9 31 0.00066 29.4 5.1 35 83-117 169-203 (362)
131 PRK04778 septation ring format 52.7 1.1E+02 0.0023 28.1 8.8 98 16-115 320-428 (569)
132 COG4942 Membrane-bound metallo 52.7 89 0.0019 28.2 8.0 37 17-53 56-92 (420)
133 PF10458 Val_tRNA-synt_C: Valy 52.6 38 0.00083 22.1 4.5 28 89-116 2-29 (66)
134 PF14282 FlxA: FlxA-like prote 52.2 49 0.0011 23.7 5.4 34 14-47 45-78 (106)
135 PF06698 DUF1192: Protein of u 51.9 67 0.0014 21.1 5.7 30 79-108 23-52 (59)
136 smart00150 SPEC Spectrin repea 51.8 13 0.00027 24.4 2.1 35 9-43 27-61 (101)
137 PF04156 IncA: IncA protein; 51.6 1.1E+02 0.0023 23.5 11.0 38 19-56 80-117 (191)
138 PF07888 CALCOCO1: Calcium bin 51.4 2.1E+02 0.0045 26.7 11.0 37 18-54 155-191 (546)
139 COG2433 Uncharacterized conser 51.2 1.1E+02 0.0024 29.0 8.6 45 11-55 413-457 (652)
140 KOG2196 Nuclear porin [Nuclear 51.0 1.5E+02 0.0033 25.0 10.0 43 13-55 113-155 (254)
141 PF02996 Prefoldin: Prefoldin 50.6 49 0.0011 23.4 5.1 33 78-110 85-117 (120)
142 PF07889 DUF1664: Protein of u 50.5 62 0.0014 24.3 5.8 30 79-108 63-92 (126)
143 PF13514 AAA_27: AAA domain 50.3 76 0.0017 31.4 7.9 43 67-109 232-274 (1111)
144 PF07334 IFP_35_N: Interferon- 50.2 41 0.00089 23.3 4.4 31 87-117 3-33 (76)
145 COG1196 Smc Chromosome segrega 50.1 1.7E+02 0.0038 29.2 10.4 41 74-114 874-914 (1163)
146 PF02994 Transposase_22: L1 tr 50.1 55 0.0012 28.6 6.3 44 80-123 154-200 (370)
147 KOG1655 Protein involved in va 50.1 35 0.00076 28.0 4.7 43 68-110 10-52 (218)
148 COG5509 Uncharacterized small 49.7 35 0.00075 22.9 3.8 27 79-105 27-53 (65)
149 PF14182 YgaB: YgaB-like prote 49.2 90 0.0019 21.8 8.7 66 22-111 2-67 (79)
150 PF09738 DUF2051: Double stran 49.2 1.7E+02 0.0037 25.1 11.7 93 14-121 78-180 (302)
151 PF04912 Dynamitin: Dynamitin 49.0 95 0.0021 27.0 7.6 34 77-110 347-380 (388)
152 PF14282 FlxA: FlxA-like prote 48.8 98 0.0021 22.2 8.7 31 83-113 50-80 (106)
153 KOG0976 Rho/Rac1-interacting s 48.4 95 0.0021 30.8 7.9 92 14-108 107-207 (1265)
154 KOG0250 DNA repair protein RAD 48.3 1.8E+02 0.004 29.3 10.0 33 83-115 393-425 (1074)
155 KOG1003 Actin filament-coating 47.8 1.5E+02 0.0033 24.2 9.5 76 18-115 114-189 (205)
156 KOG3341 RNA polymerase II tran 47.8 29 0.00063 28.9 3.9 47 77-123 15-61 (249)
157 PTZ00464 SNF-7-like protein; P 47.8 54 0.0012 26.6 5.5 37 72-108 13-49 (211)
158 COG2900 SlyX Uncharacterized p 47.2 92 0.002 21.4 5.9 44 75-118 6-49 (72)
159 KOG1760 Molecular chaperone Pr 47.1 1.3E+02 0.0027 23.0 8.1 97 11-107 18-118 (131)
160 COG2882 FliJ Flagellar biosynt 47.0 1.3E+02 0.0029 23.2 10.6 79 14-103 17-97 (148)
161 TIGR01005 eps_transp_fam exopo 46.9 29 0.00064 32.5 4.3 53 66-118 176-228 (754)
162 TIGR02977 phageshock_pspA phag 46.7 1.1E+02 0.0025 24.3 7.2 34 18-51 104-137 (219)
163 COG3883 Uncharacterized protei 46.4 60 0.0013 27.5 5.7 42 73-114 34-75 (265)
164 KOG1029 Endocytic adaptor prot 46.3 2.5E+02 0.0055 27.9 10.3 86 17-110 420-505 (1118)
165 TIGR00606 rad50 rad50. This fa 46.0 3.2E+02 0.0069 27.8 11.6 36 80-115 308-343 (1311)
166 PF09726 Macoilin: Transmembra 46.0 37 0.0008 32.4 4.8 37 12-48 544-580 (697)
167 cd04776 HTH_GnyR Helix-Turn-He 45.9 98 0.0021 22.4 6.2 68 34-113 49-116 (118)
168 PF10498 IFT57: Intra-flagella 45.8 1.2E+02 0.0025 26.6 7.6 16 95-110 332-347 (359)
169 KOG0995 Centromere-associated 45.0 1.4E+02 0.003 28.1 8.2 84 27-113 228-316 (581)
170 COG3853 TelA Uncharacterized p 44.9 61 0.0013 28.9 5.7 45 12-56 129-173 (386)
171 COG1315 Uncharacterized conser 44.8 1.7E+02 0.0036 27.3 8.6 79 17-110 407-487 (543)
172 PF15233 SYCE1: Synaptonemal c 44.5 74 0.0016 24.4 5.4 39 9-54 2-40 (134)
173 KOG0996 Structural maintenance 44.1 2.5E+02 0.0055 28.8 10.2 97 20-116 398-504 (1293)
174 PRK13182 racA polar chromosome 43.7 68 0.0015 25.3 5.4 35 74-108 82-116 (175)
175 PF12128 DUF3584: Protein of u 43.6 1.8E+02 0.0039 29.3 9.4 105 13-117 600-711 (1201)
176 PRK04863 mukB cell division pr 42.8 2.7E+02 0.0058 29.1 10.6 38 17-54 1010-1047(1486)
177 PF10046 BLOC1_2: Biogenesis o 42.8 1.1E+02 0.0023 21.6 5.8 37 19-55 34-70 (99)
178 PF02388 FemAB: FemAB family; 42.6 1E+02 0.0022 27.0 6.8 49 42-99 216-264 (406)
179 PRK14127 cell division protein 42.6 94 0.002 22.8 5.6 38 15-52 32-69 (109)
180 PRK08032 fliD flagellar cappin 42.5 37 0.00081 30.4 4.2 38 82-119 404-441 (462)
181 PF09403 FadA: Adhesion protei 42.4 1.5E+02 0.0032 22.3 8.4 20 44-64 69-88 (126)
182 PF07195 FliD_C: Flagellar hoo 42.3 46 0.00099 26.9 4.3 38 81-118 190-227 (239)
183 COG1579 Zn-ribbon protein, pos 41.7 2.1E+02 0.0045 23.9 10.5 32 21-52 46-77 (239)
184 KOG0963 Transcription factor/C 41.6 2.8E+02 0.0061 26.4 9.7 50 66-117 283-343 (629)
185 PF04859 DUF641: Plant protein 41.2 33 0.00071 26.0 3.1 70 47-116 48-119 (131)
186 TIGR00634 recN DNA repair prot 41.0 1.9E+02 0.0041 26.4 8.5 27 13-39 266-292 (563)
187 PF10186 Atg14: UV radiation r 40.9 1.9E+02 0.0041 23.2 10.8 22 85-106 71-92 (302)
188 PF13600 DUF4140: N-terminal d 40.8 77 0.0017 22.0 4.8 34 76-109 69-102 (104)
189 PHA03162 hypothetical protein; 40.6 74 0.0016 24.4 4.9 99 1-119 1-104 (135)
190 PF10234 Cluap1: Clusterin-ass 40.6 74 0.0016 26.9 5.4 43 69-111 161-203 (267)
191 PF08657 DASH_Spc34: DASH comp 40.6 40 0.00087 28.2 3.8 59 62-120 141-216 (259)
192 PRK10869 recombination and rep 40.5 2.6E+02 0.0057 25.6 9.4 48 12-59 156-203 (553)
193 KOG0243 Kinesin-like protein [ 40.4 2.9E+02 0.0062 27.9 9.9 42 73-114 472-513 (1041)
194 KOG0933 Structural maintenance 40.2 60 0.0013 32.6 5.3 20 20-39 684-703 (1174)
195 KOG1937 Uncharacterized conser 40.1 2.8E+02 0.006 25.6 9.2 66 19-95 344-411 (521)
196 PF10458 Val_tRNA-synt_C: Valy 40.1 97 0.0021 20.1 4.9 36 68-103 30-65 (66)
197 COG2433 Uncharacterized conser 40.0 97 0.0021 29.4 6.5 34 82-115 479-512 (652)
198 PRK07857 hypothetical protein; 40.0 1.5E+02 0.0032 21.7 6.3 42 8-49 23-64 (106)
199 PF11348 DUF3150: Protein of u 39.6 70 0.0015 26.6 5.1 52 60-114 67-119 (257)
200 PF11068 YlqD: YlqD protein; 39.5 84 0.0018 23.7 5.1 41 68-108 11-51 (131)
201 PF14257 DUF4349: Domain of un 39.4 1.5E+02 0.0031 24.1 6.9 79 14-121 126-204 (262)
202 COG5293 Predicted ATPase [Gene 39.4 2.1E+02 0.0045 26.7 8.3 95 18-112 246-363 (591)
203 PRK06266 transcription initiat 39.2 29 0.00064 27.3 2.7 30 65-94 141-170 (178)
204 PLN02320 seryl-tRNA synthetase 39.2 3.1E+02 0.0068 25.3 11.1 75 19-113 92-166 (502)
205 PF15619 Lebercilin: Ciliary p 38.9 2E+02 0.0043 22.9 10.2 83 18-114 73-155 (194)
206 PRK15365 type III secretion sy 38.8 1.4E+02 0.003 21.9 5.8 20 21-40 10-29 (107)
207 PF06810 Phage_GP20: Phage min 38.8 1.8E+02 0.0039 22.3 9.2 35 21-55 14-48 (155)
208 PRK11281 hypothetical protein; 38.6 3.9E+02 0.0085 27.1 10.8 37 19-55 72-108 (1113)
209 PHA02675 ORF104 fusion protein 38.4 1.5E+02 0.0031 21.2 6.6 60 57-118 19-85 (90)
210 PRK13922 rod shape-determining 38.4 2.1E+02 0.0046 23.3 7.8 58 15-74 71-128 (276)
211 PF15294 Leu_zip: Leucine zipp 38.0 2.6E+02 0.0055 23.9 10.5 35 21-55 147-181 (278)
212 PF12761 End3: Actin cytoskele 38.0 90 0.002 25.3 5.3 84 24-111 100-194 (195)
213 PF04799 Fzo_mitofusin: fzo-li 37.8 1.3E+02 0.0028 23.9 6.1 42 73-114 116-167 (171)
214 cd04769 HTH_MerR2 Helix-Turn-H 37.8 1.3E+02 0.0027 21.5 5.7 66 32-111 48-113 (116)
215 cd01109 HTH_YyaN Helix-Turn-He 37.8 1.2E+02 0.0026 21.4 5.5 60 35-109 52-111 (113)
216 PF13949 ALIX_LYPXL_bnd: ALIX 37.6 1.1E+02 0.0023 25.0 5.8 105 10-116 6-116 (296)
217 PF13815 Dzip-like_N: Iguana/D 37.3 1.6E+02 0.0034 21.3 6.2 39 75-113 78-116 (118)
218 PRK00846 hypothetical protein; 36.9 1.4E+02 0.003 20.7 5.4 24 88-111 38-61 (77)
219 PF02994 Transposase_22: L1 tr 36.7 1.2E+02 0.0027 26.4 6.4 38 77-114 144-181 (370)
220 TIGR03007 pepcterm_ChnLen poly 36.7 3E+02 0.0065 24.3 10.7 17 17-33 251-267 (498)
221 PF07334 IFP_35_N: Interferon- 36.5 1.3E+02 0.0029 20.8 5.3 38 23-60 3-40 (76)
222 PF12329 TMF_DNA_bd: TATA elem 36.3 1.3E+02 0.0029 20.2 5.9 38 77-114 33-70 (74)
223 COG1196 Smc Chromosome segrega 36.2 85 0.0018 31.3 5.8 33 79-111 241-273 (1163)
224 PRK10698 phage shock protein P 36.1 2.1E+02 0.0045 23.2 7.2 35 18-52 104-138 (222)
225 PF04102 SlyX: SlyX; InterPro 36.0 1.3E+02 0.0028 19.9 5.9 40 76-115 10-49 (69)
226 PRK04778 septation ring format 36.0 2.1E+02 0.0046 26.2 8.1 88 19-116 63-151 (569)
227 PF08287 DASH_Spc19: Spc19; I 35.9 2E+02 0.0044 22.1 7.9 85 23-115 7-92 (153)
228 PRK10722 hypothetical protein; 35.6 89 0.0019 26.3 5.0 41 17-57 162-206 (247)
229 PF10779 XhlA: Haemolysin XhlA 35.3 1.3E+02 0.0029 19.8 5.6 29 84-112 20-48 (71)
230 KOG4196 bZIP transcription fac 35.3 1.5E+02 0.0032 22.8 5.8 39 79-117 76-114 (135)
231 KOG0980 Actin-binding protein 35.2 4.7E+02 0.01 26.2 11.6 22 74-95 463-484 (980)
232 PRK14158 heat shock protein Gr 35.1 1.4E+02 0.0031 23.9 6.0 41 75-115 38-78 (194)
233 KOG4643 Uncharacterized coiled 35.0 1.1E+02 0.0025 30.7 6.3 29 70-98 261-292 (1195)
234 PF14584 DUF4446: Protein of u 34.7 93 0.002 23.9 4.7 43 74-116 43-85 (151)
235 PF10018 Med4: Vitamin-D-recep 34.5 1.5E+02 0.0033 23.1 6.1 39 16-54 25-63 (188)
236 smart00787 Spc7 Spc7 kinetocho 34.4 3E+02 0.0064 23.6 10.7 40 20-59 165-204 (312)
237 PF08286 Spc24: Spc24 subunit 34.4 4.5 9.8E-05 29.5 -2.5 55 20-75 20-78 (118)
238 PF08912 Rho_Binding: Rho Bind 34.2 1.5E+02 0.0033 20.1 5.3 33 82-114 1-33 (69)
239 PF11068 YlqD: YlqD protein; 34.1 2E+02 0.0044 21.6 9.6 65 22-103 22-86 (131)
240 PRK15178 Vi polysaccharide exp 34.0 3.6E+02 0.0078 24.4 9.2 36 27-62 279-315 (434)
241 cd00176 SPEC Spectrin repeats, 34.0 1.9E+02 0.0041 21.1 8.7 32 11-42 31-62 (213)
242 PF15290 Syntaphilin: Golgi-lo 33.8 1.5E+02 0.0033 25.6 6.2 99 11-117 52-157 (305)
243 PF10168 Nup88: Nuclear pore c 33.8 3.2E+02 0.0068 26.3 9.0 34 78-111 633-666 (717)
244 cd09238 V_Alix_like_1 Protein- 33.7 3E+02 0.0066 23.5 10.3 102 17-123 6-125 (339)
245 PF10498 IFT57: Intra-flagella 33.6 3.3E+02 0.0071 23.9 9.2 44 73-116 248-291 (359)
246 PF06156 DUF972: Protein of un 33.6 1.8E+02 0.0039 21.1 5.9 40 73-112 4-43 (107)
247 TIGR02894 DNA_bind_RsfA transc 33.4 1.4E+02 0.003 23.5 5.6 31 86-116 113-143 (161)
248 smart00435 TOPEUc DNA Topoisom 33.4 2.2E+02 0.0047 25.5 7.4 33 25-57 275-307 (391)
249 PRK10698 phage shock protein P 33.3 2.6E+02 0.0056 22.6 10.9 100 14-118 32-140 (222)
250 PRK14143 heat shock protein Gr 33.1 1.5E+02 0.0033 24.5 6.1 40 76-115 66-105 (238)
251 PRK10361 DNA recombination pro 33.0 3.9E+02 0.0084 24.5 10.5 29 83-111 132-160 (475)
252 PF00038 Filament: Intermediat 32.9 2.8E+02 0.006 22.8 11.9 44 72-115 243-286 (312)
253 PF04012 PspA_IM30: PspA/IM30 32.8 2.4E+02 0.0053 22.1 9.6 101 13-118 30-139 (221)
254 PF00435 Spectrin: Spectrin re 32.6 1.4E+02 0.003 19.2 8.3 32 77-108 73-104 (105)
255 PHA01750 hypothetical protein 32.6 71 0.0015 21.8 3.3 30 79-108 44-73 (75)
256 PRK14148 heat shock protein Gr 32.4 1.8E+02 0.0038 23.4 6.2 40 76-115 39-78 (195)
257 KOG0804 Cytoplasmic Zn-finger 32.1 4.1E+02 0.0089 24.5 9.8 28 87-114 417-444 (493)
258 PF11365 DUF3166: Protein of u 32.1 1.9E+02 0.0041 20.8 5.7 36 80-115 11-46 (96)
259 PF03234 CDC37_N: Cdc37 N term 32.0 2.6E+02 0.0056 22.2 8.8 42 15-56 34-75 (177)
260 PF12128 DUF3584: Protein of u 31.9 5.2E+02 0.011 26.1 10.5 53 62-114 877-929 (1201)
261 PF05103 DivIVA: DivIVA protei 31.9 31 0.00066 24.8 1.6 41 72-112 20-60 (131)
262 CHL00019 atpF ATP synthase CF0 31.8 1.7E+02 0.0037 22.6 5.9 38 78-115 49-86 (184)
263 PF13600 DUF4140: N-terminal d 31.7 1.6E+02 0.0036 20.3 5.3 33 11-43 68-100 (104)
264 PRK14151 heat shock protein Gr 31.6 1.3E+02 0.0029 23.6 5.3 39 76-114 19-57 (176)
265 PF04568 IATP: Mitochondrial A 31.5 1.4E+02 0.003 21.6 5.0 32 83-114 68-99 (100)
266 PF11471 Sugarporin_N: Maltopo 31.4 1.1E+02 0.0024 20.0 4.1 28 87-114 28-55 (60)
267 KOG4010 Coiled-coil protein TP 31.4 1.9E+02 0.0042 23.5 6.2 41 79-119 46-86 (208)
268 KOG1003 Actin filament-coating 31.4 1.7E+02 0.0038 23.9 5.9 27 25-51 51-77 (205)
269 PF05565 Sipho_Gp157: Siphovir 31.3 65 0.0014 24.7 3.4 71 45-116 23-93 (162)
270 PF10168 Nup88: Nuclear pore c 31.1 4.8E+02 0.011 25.0 12.0 87 11-115 630-716 (717)
271 PF04065 Not3: Not1 N-terminal 30.9 3.1E+02 0.0067 22.7 8.8 96 18-114 50-152 (233)
272 PRK07352 F0F1 ATP synthase sub 30.5 1.9E+02 0.0041 22.1 5.9 36 78-113 44-79 (174)
273 PRK14161 heat shock protein Gr 30.3 1.7E+02 0.0038 23.0 5.8 36 79-114 21-56 (178)
274 PF06133 DUF964: Protein of un 30.3 1.6E+02 0.0036 20.2 5.2 22 12-33 32-53 (108)
275 PF12548 DUF3740: Sulfatase pr 30.3 1.2E+02 0.0026 23.3 4.7 47 59-105 80-127 (145)
276 PF03357 Snf7: Snf7; InterPro 30.3 1E+02 0.0022 22.7 4.3 38 77-114 1-38 (171)
277 KOG0978 E3 ubiquitin ligase in 29.9 2.6E+02 0.0055 27.0 7.6 52 19-72 495-546 (698)
278 PTZ00464 SNF-7-like protein; P 29.9 3E+02 0.0065 22.3 12.1 43 10-55 11-53 (211)
279 TIGR03755 conj_TIGR03755 integ 29.7 33 0.00071 30.9 1.7 58 21-79 262-330 (418)
280 PF02050 FliJ: Flagellar FliJ 29.6 1.8E+02 0.0038 19.5 8.9 81 19-109 4-84 (123)
281 PRK06231 F0F1 ATP synthase sub 29.6 1.9E+02 0.0041 23.1 5.9 37 78-114 73-109 (205)
282 cd01282 HTH_MerR-like_sg3 Heli 29.4 2.1E+02 0.0045 20.3 6.8 61 34-106 50-110 (112)
283 PF15397 DUF4618: Domain of un 29.3 3.5E+02 0.0076 22.8 11.3 98 13-116 6-106 (258)
284 PRK14162 heat shock protein Gr 29.3 1.8E+02 0.0039 23.4 5.7 43 73-115 35-77 (194)
285 PTZ00009 heat shock 70 kDa pro 29.3 2.3E+02 0.005 26.4 7.2 47 67-113 561-611 (653)
286 PRK05759 F0F1 ATP synthase sub 29.2 2.1E+02 0.0046 21.1 5.9 37 78-114 29-65 (156)
287 KOG4302 Microtubule-associated 29.2 4.3E+02 0.0094 25.3 9.0 96 14-114 161-256 (660)
288 cd04786 HTH_MerR-like_sg7 Heli 29.1 2.1E+02 0.0046 21.1 5.8 64 32-111 49-112 (131)
289 PF10212 TTKRSYEDQ: Predicted 28.9 4.8E+02 0.01 24.3 10.5 23 88-110 491-513 (518)
290 KOG3684 Ca2+-activated K+ chan 28.8 2.9E+02 0.0062 25.5 7.4 81 23-112 389-469 (489)
291 PRK06342 transcription elongat 28.5 2.3E+02 0.005 21.9 6.1 41 17-57 38-87 (160)
292 PF11932 DUF3450: Protein of u 28.5 3.2E+02 0.0069 22.1 10.6 21 20-40 56-76 (251)
293 PF06005 DUF904: Protein of un 28.5 1.9E+02 0.0041 19.5 10.3 36 19-54 3-38 (72)
294 PRK06664 fliD flagellar hook-a 28.1 74 0.0016 30.1 3.8 38 82-119 598-635 (661)
295 PRK14163 heat shock protein Gr 28.1 1.8E+02 0.0039 23.8 5.6 45 71-115 34-78 (214)
296 PF10481 CENP-F_N: Cenp-F N-te 28.1 1.1E+02 0.0024 26.3 4.5 30 86-115 97-126 (307)
297 PRK14139 heat shock protein Gr 27.9 2E+02 0.0044 22.9 5.8 39 77-115 32-70 (185)
298 COG1842 PspA Phage shock prote 27.6 1.7E+02 0.0037 23.9 5.5 102 14-117 32-139 (225)
299 KOG0972 Huntingtin interacting 27.6 1.2E+02 0.0025 26.7 4.5 56 43-98 204-266 (384)
300 KOG0933 Structural maintenance 27.6 3.4E+02 0.0073 27.6 8.1 31 18-48 675-705 (1174)
301 PF04136 Sec34: Sec34-like fam 27.6 2.3E+02 0.0049 21.7 5.9 69 23-91 45-113 (157)
302 PRK13455 F0F1 ATP synthase sub 27.4 2.2E+02 0.0048 21.9 5.9 37 78-114 52-88 (184)
303 PRK14154 heat shock protein Gr 27.3 1.8E+02 0.004 23.6 5.5 34 80-113 55-88 (208)
304 PRK06798 fliD flagellar cappin 27.3 93 0.002 27.8 4.1 35 82-116 377-411 (440)
305 KOG4403 Cell surface glycoprot 27.2 4.9E+02 0.011 24.1 8.6 30 86-115 349-378 (575)
306 PRK14156 heat shock protein Gr 27.1 1.8E+02 0.0039 23.0 5.3 42 73-114 21-64 (177)
307 PRK13461 F0F1 ATP synthase sub 27.0 2.4E+02 0.0053 21.0 5.9 36 78-113 30-65 (159)
308 PF05064 Nsp1_C: Nsp1-like C-t 26.9 1.8E+02 0.0039 21.1 5.0 44 13-56 57-100 (116)
309 TIGR01242 26Sp45 26S proteasom 26.7 1.5E+02 0.0033 25.1 5.3 33 82-114 4-36 (364)
310 PF05565 Sipho_Gp157: Siphovir 26.6 2.8E+02 0.006 21.2 6.2 44 71-114 27-70 (162)
311 PF05524 PEP-utilisers_N: PEP- 26.5 1.3E+02 0.0028 21.4 4.1 48 66-115 12-59 (123)
312 COG1842 PspA Phage shock prote 26.5 3.6E+02 0.0078 22.0 8.7 39 77-115 106-144 (225)
313 PF11945 WASH_WAHD: WAHD domai 26.5 1.4E+02 0.0031 25.4 5.0 43 73-115 32-74 (297)
314 PRK09039 hypothetical protein; 26.2 4.2E+02 0.0092 22.8 11.2 39 76-114 157-199 (343)
315 PRK14140 heat shock protein Gr 26.2 2.5E+02 0.0055 22.5 6.1 40 75-114 35-74 (191)
316 PHA02557 22 prohead core prote 26.2 2.3E+02 0.005 24.2 6.0 47 67-113 131-177 (271)
317 TIGR01144 ATP_synt_b ATP synth 26.1 2.6E+02 0.0057 20.4 5.9 37 78-114 20-56 (147)
318 PHA00489 scaffolding protein 26.0 60 0.0013 23.4 2.2 45 18-69 25-74 (101)
319 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.9 2.7E+02 0.0058 20.4 11.3 32 19-50 58-89 (132)
320 PF02388 FemAB: FemAB family; 25.8 4.5E+02 0.0098 23.0 9.1 27 83-109 272-298 (406)
321 PRK07353 F0F1 ATP synthase sub 25.7 2.6E+02 0.0057 20.2 5.9 37 78-114 30-66 (140)
322 PF06156 DUF972: Protein of un 25.7 2.6E+02 0.0057 20.2 5.6 35 81-115 5-39 (107)
323 cd07623 BAR_SNX1_2 The Bin/Amp 25.7 3.5E+02 0.0076 21.6 8.5 76 15-90 21-106 (224)
324 PRK14472 F0F1 ATP synthase sub 25.6 2.6E+02 0.0056 21.3 5.9 37 78-114 43-79 (175)
325 PRK12765 flagellar capping pro 25.6 91 0.002 29.1 3.9 38 81-118 529-566 (595)
326 KOG4674 Uncharacterized conser 25.6 4.9E+02 0.011 28.0 9.2 96 16-112 55-164 (1822)
327 PF05791 Bacillus_HBL: Bacillu 25.5 3.3E+02 0.0071 21.2 9.0 37 79-115 144-180 (184)
328 PF08614 ATG16: Autophagy prot 25.5 3.3E+02 0.0071 21.2 9.5 42 74-115 134-175 (194)
329 KOG4603 TBP-1 interacting prot 25.5 3.6E+02 0.0079 21.8 9.4 36 15-50 81-116 (201)
330 PRK08724 fliD flagellar cappin 25.3 1.1E+02 0.0024 29.2 4.4 36 83-118 616-651 (673)
331 PF14193 DUF4315: Domain of un 25.3 1.5E+02 0.0032 20.7 4.0 36 21-56 2-37 (83)
332 PF13863 DUF4200: Domain of un 25.3 2.5E+02 0.0055 19.9 5.8 48 16-63 77-124 (126)
333 KOG0995 Centromere-associated 25.2 1.6E+02 0.0036 27.6 5.3 15 96-110 344-358 (581)
334 PF11853 DUF3373: Protein of u 25.1 68 0.0015 29.5 2.9 26 85-110 32-57 (489)
335 PRK13460 F0F1 ATP synthase sub 25.1 2.6E+02 0.0057 21.3 5.9 37 78-114 41-77 (173)
336 cd04770 HTH_HMRTR Helix-Turn-H 25.1 2.2E+02 0.0047 20.2 5.1 61 33-108 50-110 (123)
337 PRK13453 F0F1 ATP synthase sub 24.9 2.7E+02 0.0058 21.3 5.9 35 78-112 43-77 (173)
338 PRK09173 F0F1 ATP synthase sub 24.9 2.7E+02 0.0058 20.8 5.8 37 78-114 27-63 (159)
339 PF01025 GrpE: GrpE; InterPro 24.7 71 0.0015 23.9 2.5 33 81-113 15-47 (165)
340 PF13942 Lipoprotein_20: YfhG 24.7 2E+02 0.0043 23.1 5.1 41 17-57 116-160 (179)
341 PRK14475 F0F1 ATP synthase sub 24.6 2.7E+02 0.0059 21.1 5.9 38 77-114 34-71 (167)
342 PF03961 DUF342: Protein of un 24.6 2.9E+02 0.0062 24.5 6.7 31 18-48 332-362 (451)
343 PF05529 Bap31: B-cell recepto 24.5 1.8E+02 0.0038 22.5 4.8 31 76-106 160-190 (192)
344 COG2919 Septum formation initi 24.5 2.8E+02 0.0061 20.1 6.2 51 17-69 61-114 (117)
345 cd04786 HTH_MerR-like_sg7 Heli 24.3 2.9E+02 0.0064 20.3 5.8 40 23-62 81-120 (131)
346 PF06103 DUF948: Bacterial pro 24.1 2.3E+02 0.0051 19.1 5.5 35 77-111 26-60 (90)
347 PRK14155 heat shock protein Gr 24.0 2E+02 0.0042 23.4 5.1 36 80-115 16-51 (208)
348 cd04785 HTH_CadR-PbrR-like Hel 24.0 2.5E+02 0.0053 20.3 5.3 60 34-108 51-110 (126)
349 cd04787 HTH_HMRTR_unk Helix-Tu 23.9 2.9E+02 0.0063 20.1 8.1 67 31-112 48-114 (133)
350 TIGR01837 PHA_granule_1 poly(h 23.8 81 0.0018 23.1 2.6 20 84-103 96-115 (118)
351 KOG4552 Vitamin-D-receptor int 23.7 2.8E+02 0.0061 23.2 5.9 37 16-52 70-106 (272)
352 KOG0161 Myosin class II heavy 23.6 8.7E+02 0.019 26.5 10.6 90 16-113 1452-1541(1930)
353 PRK07737 fliD flagellar cappin 23.5 1E+02 0.0022 28.0 3.7 33 85-117 442-474 (501)
354 cd00238 ERp29c ERp29 and ERp38 23.4 1.5E+02 0.0033 20.8 3.9 37 80-116 50-89 (93)
355 PRK00226 greA transcription el 23.3 3E+02 0.0065 20.7 5.8 23 35-57 55-77 (157)
356 cd01107 HTH_BmrR Helix-Turn-He 23.3 2.6E+02 0.0056 19.6 5.2 32 76-107 74-105 (108)
357 PF09278 MerR-DNA-bind: MerR, 23.3 2E+02 0.0043 17.9 4.9 57 32-103 6-62 (65)
358 PF07058 Myosin_HC-like: Myosi 23.2 5.2E+02 0.011 22.7 11.4 87 19-119 58-153 (351)
359 PF07195 FliD_C: Flagellar hoo 23.2 3.2E+02 0.0069 21.9 6.2 32 77-108 193-224 (239)
360 cd04776 HTH_GnyR Helix-Turn-He 23.1 2.8E+02 0.006 20.0 5.4 35 80-114 76-110 (118)
361 cd01108 HTH_CueR Helix-Turn-He 23.0 2.6E+02 0.0057 20.2 5.3 60 34-108 51-110 (127)
362 PF05377 FlaC_arch: Flagella a 23.0 2.2E+02 0.0049 18.5 5.7 36 79-114 9-44 (55)
363 PRK14147 heat shock protein Gr 22.9 2.5E+02 0.0054 22.0 5.4 35 81-115 22-56 (172)
364 PF07106 TBPIP: Tat binding pr 22.9 2.8E+02 0.006 21.0 5.6 40 11-50 70-109 (169)
365 PRK10361 DNA recombination pro 22.5 2.7E+02 0.006 25.5 6.2 18 78-95 141-158 (475)
366 PRK14141 heat shock protein Gr 22.5 2.1E+02 0.0045 23.3 5.0 36 80-115 34-69 (209)
367 TIGR03017 EpsF chain length de 22.4 5.1E+02 0.011 22.3 12.1 19 14-32 255-273 (444)
368 PF08826 DMPK_coil: DMPK coile 22.3 2.4E+02 0.0052 18.5 8.1 35 78-112 26-60 (61)
369 PF04375 HemX: HemX; InterPro 22.3 5.2E+02 0.011 22.4 9.3 19 26-44 59-77 (372)
370 PF13758 Prefoldin_3: Prefoldi 22.3 3.1E+02 0.0068 19.9 6.1 48 67-114 44-98 (99)
371 PF12240 Angiomotin_C: Angiomo 22.3 4.4E+02 0.0095 21.6 10.0 83 18-114 4-87 (205)
372 PRK13169 DNA replication intia 22.2 3.2E+02 0.007 20.0 6.0 41 73-113 4-44 (110)
373 PRK00736 hypothetical protein; 22.2 2.5E+02 0.0053 18.6 5.9 37 79-115 14-50 (68)
374 COG4024 Uncharacterized protei 22.1 1.5E+02 0.0032 24.2 3.9 103 14-123 65-181 (218)
375 PRK13676 hypothetical protein; 22.1 2.7E+02 0.0059 19.7 5.1 22 12-33 35-56 (114)
376 PF05384 DegS: Sensor protein 22.1 3.8E+02 0.0082 20.8 6.2 40 76-115 5-44 (159)
377 PF06305 DUF1049: Protein of u 22.0 1.1E+02 0.0023 19.4 2.7 22 89-110 46-67 (68)
378 TIGR02051 MerR Hg(II)-responsi 21.8 3E+02 0.0065 19.8 5.3 60 32-108 48-107 (124)
379 PRK14160 heat shock protein Gr 21.8 2.6E+02 0.0056 22.8 5.4 33 80-112 64-96 (211)
380 PRK10803 tol-pal system protei 21.8 2.2E+02 0.0047 23.6 5.1 32 17-48 58-89 (263)
381 TIGR03185 DNA_S_dndD DNA sulfu 21.7 6.5E+02 0.014 23.3 12.0 36 77-112 428-463 (650)
382 PF15456 Uds1: Up-regulated Du 21.7 3.4E+02 0.0075 20.1 11.9 94 13-111 22-115 (124)
383 PF11853 DUF3373: Protein of u 21.6 88 0.0019 28.8 2.9 32 82-114 23-54 (489)
384 COG4026 Uncharacterized protei 21.6 5E+02 0.011 22.0 9.7 31 81-111 167-197 (290)
385 PRK00295 hypothetical protein; 21.5 2.5E+02 0.0055 18.5 5.9 37 79-115 14-50 (68)
386 PF07851 TMPIT: TMPIT-like pro 21.5 3.3E+02 0.0072 23.8 6.3 38 13-50 4-41 (330)
387 PRK10227 DNA-binding transcrip 21.5 2.8E+02 0.0061 20.5 5.2 62 32-108 49-110 (135)
388 PRK10929 putative mechanosensi 21.5 8.5E+02 0.018 24.8 9.8 98 14-116 209-311 (1109)
389 PF06825 HSBP1: Heat shock fac 21.5 2E+02 0.0044 18.5 3.8 39 75-113 8-50 (54)
390 PRK11239 hypothetical protein; 21.4 1.6E+02 0.0034 24.3 4.0 18 41-58 128-145 (215)
391 PF10018 Med4: Vitamin-D-recep 21.3 2.6E+02 0.0056 21.8 5.2 35 83-117 28-62 (188)
392 PRK14621 hypothetical protein; 21.3 1.1E+02 0.0025 22.3 3.0 23 85-107 63-86 (111)
393 KOG3091 Nuclear pore complex, 21.2 6.7E+02 0.015 23.3 9.7 89 11-108 409-497 (508)
394 PRK14161 heat shock protein Gr 21.2 3.4E+02 0.0074 21.4 5.9 31 77-107 12-42 (178)
395 PRK14623 hypothetical protein; 21.1 1.2E+02 0.0025 22.1 3.0 24 84-107 59-83 (106)
396 PRK03992 proteasome-activating 21.1 2.7E+02 0.0059 24.1 5.8 40 76-115 7-46 (389)
397 PF07889 DUF1664: Protein of u 21.1 3.6E+02 0.0079 20.2 8.0 33 80-112 92-124 (126)
398 PF10975 DUF2802: Protein of u 21.0 1.7E+02 0.0036 19.6 3.5 30 34-63 5-34 (70)
399 PRK10869 recombination and rep 21.0 6.5E+02 0.014 23.1 9.3 90 13-113 261-370 (553)
400 COG4768 Uncharacterized protei 21.0 3.3E+02 0.0072 21.0 5.5 50 71-120 25-74 (139)
401 TIGR02894 DNA_bind_RsfA transc 21.0 3.5E+02 0.0076 21.3 5.8 38 11-48 78-118 (161)
402 PF04816 DUF633: Family of unk 20.9 71 0.0015 25.6 2.0 34 64-97 152-185 (205)
403 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.8 3.1E+02 0.0068 19.9 5.3 59 34-107 51-109 (127)
404 KOG0161 Myosin class II heavy 20.8 8.5E+02 0.018 26.5 9.9 51 14-64 1190-1240(1930)
405 PRK00888 ftsB cell division pr 20.8 2.8E+02 0.0061 19.8 4.9 32 81-112 31-62 (105)
406 TIGR02044 CueR Cu(I)-responsiv 20.7 3.2E+02 0.0068 19.7 5.3 60 34-108 51-110 (127)
407 PRK14471 F0F1 ATP synthase sub 20.7 3.7E+02 0.0081 20.1 5.9 34 78-111 33-66 (164)
408 PF08287 DASH_Spc19: Spc19; I 20.5 2.7E+02 0.0059 21.4 5.1 41 75-115 59-99 (153)
409 PRK02119 hypothetical protein; 20.4 2.8E+02 0.0061 18.6 6.0 36 80-115 19-54 (73)
410 cd07605 I-BAR_IMD Inverse (I)- 20.3 4.8E+02 0.01 21.3 9.6 98 11-117 18-120 (223)
411 COG4080 SpoU rRNA Methylase fa 20.3 38 0.00083 26.2 0.3 31 60-90 50-80 (147)
412 PF05791 Bacillus_HBL: Bacillu 20.2 4.2E+02 0.0091 20.6 7.4 77 14-108 104-180 (184)
413 PRK04325 hypothetical protein; 20.2 2.9E+02 0.0062 18.6 6.0 37 79-115 18-54 (74)
414 PF13874 Nup54: Nucleoporin co 20.2 3.7E+02 0.0081 19.9 5.9 41 75-115 42-82 (141)
415 KOG2991 Splicing regulator [RN 20.1 5.7E+02 0.012 22.1 9.3 86 16-116 213-303 (330)
416 PF07111 HCR: Alpha helical co 20.1 8.2E+02 0.018 23.8 9.9 28 10-37 468-495 (739)
417 TIGR01000 bacteriocin_acc bact 20.1 6E+02 0.013 22.3 8.7 32 24-55 169-200 (457)
418 PRK08475 F0F1 ATP synthase sub 20.0 3.9E+02 0.0085 20.4 5.9 36 78-113 47-82 (167)
No 1
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=225.82 Aligned_cols=125 Identities=52% Similarity=0.815 Sum_probs=117.8
Q ss_pred CCCc--CccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHH
Q 032018 1 MAGR--AETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEV 78 (148)
Q Consensus 1 ~~~~--~~~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea 78 (148)
||++ ..|.++.|++.+.++++|+.|+++++.|++++.+|+++++||.+|+++|++++|+|+|||||||||||+||.+|
T Consensus 1 m~~a~~~~~~~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeV 80 (140)
T KOG4098|consen 1 MAAAQSGSGTAKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEV 80 (140)
T ss_pred CchhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHH
Confidence 5555 33666778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESES 125 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~~~~~ 125 (148)
+|.|+.++++|+..++.|..+|..+.++|++|+++|+|+|.++++.+
T Consensus 81 lP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~hkIrv~~e~~~~ 127 (140)
T KOG4098|consen 81 LPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKDHKIRVVKEKESA 127 (140)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeecchhch
Confidence 99999999999999999999999999999999999999999987753
No 2
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.94 E-value=3.4e-26 Score=167.01 Aligned_cols=107 Identities=15% Similarity=0.301 Sum_probs=104.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~ 91 (148)
||.+++++.+||++|++++.+.++++.|+.+++||++|+++|+.++||++|||+||||||++|++|++++|++|+++|+.
T Consensus 2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLEL 81 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 92 VIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 92 ~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.|+.|++++..+++++.+++.+++-.+
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887443
No 3
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=153.87 Aligned_cols=113 Identities=16% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHH
Q 032018 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEG 88 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~ 88 (148)
+.-||.+++.+++||+||++++.++.++++++++|+|++.|+++|+.+++|+.+||.||++||+.+.++|+..|++|+|+
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~ 81 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET 81 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018 89 IEEVIARLNEALAAKKKEISDFEAKYKIRIRKP 121 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~ 121 (148)
|+.++++|++|...+++++.+++.+++-++.+.
T Consensus 82 Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 82 LELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999998777653
No 4
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.90 E-value=4.9e-23 Score=149.00 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
++++.+||+|+++++.+.++++.|+++++||+.|+++|..++||++||++||+|||++++++|.+.|++++++|+..+++
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032018 96 LNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 96 l~~ql~~~~kel~~~~~k~~ 115 (148)
+++++..+.+++.+++.++.
T Consensus 82 l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865
No 5
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.5e-23 Score=151.03 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
...++.+++||+||.++...+..++.|+++|.|++.|+++|+.|++|++|||++|||||+++.+|+..+|.+|++||+.+
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~E 84 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKE 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 032018 93 IARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 93 i~~l~~ql~~~~kel~~~~~k~ 114 (148)
|++++.++.++++++.+.+...
T Consensus 85 ikr~e~~i~d~q~e~~k~R~~v 106 (120)
T KOG3478|consen 85 IKRLENQIRDSQEEFEKQREAV 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 6
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.89 E-value=9.3e-23 Score=151.72 Aligned_cols=112 Identities=16% Similarity=0.281 Sum_probs=107.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH
Q 032018 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI 89 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L 89 (148)
.-||.+++.+.+||++|++++.+.++++.|+.+++|+++|+++|+.+++|++|||+||||||++++++++.+|++|+++|
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018 90 EEVIARLNEALAAKKKEISDFEAKYKIRIRKP 121 (148)
Q Consensus 90 ~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~ 121 (148)
+..|++|+++...+++.+.+++.+++-.+.+.
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998777653
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.86 E-value=1.6e-20 Score=133.64 Aligned_cols=105 Identities=23% Similarity=0.413 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
|+++.+|+.++.++..+.+++..++.++++|+.|+++|..++||++|||+||++||+++++++++.|+++++.++..|+.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccC
Q 032018 96 LNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 96 l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
|++++..+.+++.+++.++...+.+
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988764
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.58 E-value=6.7e-14 Score=102.60 Aligned_cols=100 Identities=20% Similarity=0.393 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------------CCCceeeeec-ceee
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD-----------------------PSRKCYRMIG-GVLV 71 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~dr~~yrlVG-~VLV 71 (148)
+++...|++|+++++.+.+++..+...+.|++.++++|+.++ ++.+||..|| |++|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 578899999999999999999999999999999999999997 7899999999 9999
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+++.++|.+.|++|++.|+..++.+++++..+.++++.++..+.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.58 E-value=6.9e-14 Score=105.24 Aligned_cols=105 Identities=15% Similarity=0.318 Sum_probs=98.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------CCceee-------------ee
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-----------SRKCYR-------------MI 66 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------dr~~yr-------------lV 66 (148)
..+.++++...|++|+++++.|.+++..|...+.|+..++++|+.+++ ++.||. ++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 468899999999999999999999999999999999999999999985 577776 88
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+||+|+.+++||++.|++|++.|+..++.++.++..+.++++.+....+
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988766
No 10
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.44 E-value=4.9e-12 Score=93.39 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeee-----------------------cceeee
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMI-----------------------GGVLVE 72 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlV-----------------------G~VLVe 72 (148)
+++..+|++|+++++.|.+++..|...+.+++.++++|+.++++..|+.+| +||+||
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 578899999999999999999999999999999999999998766677666 999999
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+++++|++.|++|++.|+..++.+++.+..+.++++.+....+
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987654
No 11
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.41 E-value=5.8e-12 Score=93.32 Aligned_cols=100 Identities=18% Similarity=0.324 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------------------CCceeeeecceee
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP------------------------SRKCYRMIGGVLV 71 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------dr~~yrlVG~VLV 71 (148)
+++...+++|+.+++.+.+++..|...+.|+..++++|+.+++ ++.|+.+++|++|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 5688999999999999999999999999999999999999976 7889999999999
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
++++++|++.+++|++.|+..++.+++++..+.++++.+...+.
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654
No 12
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-09 Score=83.84 Aligned_cols=105 Identities=19% Similarity=0.300 Sum_probs=95.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------------------CCceeeeec
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP------------------------SRKCYRMIG 67 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------dr~~yrlVG 67 (148)
.++++++.+++|.|+.+++.|.+++..|...++|+..+++||+++.. |..+.-++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 46889999999999999999999999999999999999999988732 334447788
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
||-|+++.++|+..|++|++.|++.+..++..+.++...+..+....+-
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877664
No 13
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.11 E-value=2.3e-09 Score=82.26 Aligned_cols=108 Identities=15% Similarity=0.232 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------------------Cceeeeecceee
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS---------------------RKCYRMIGGVLV 71 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d---------------------r~~yrlVG~VLV 71 (148)
..+++++..|+.|+++++.|.+.++.|..-.+++...+++|+.++++ ..+.-++.|+.|
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 46788999999999999999999999999999999999999988544 444478899999
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
++|.++|+..++.|+++|++.++.|...++++...+++++..+.-++.+
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877766654
No 14
>PRK01203 prefoldin subunit alpha; Provisional
Probab=98.67 E-value=1e-06 Score=66.80 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------------CCCceeeeecceeee
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD-----------------------PSRKCYRMIGGVLVE 72 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~dr~~yrlVG~VLVe 72 (148)
+++.++|+.++++.+.|.++++.|....+++...++.|+.++ +|..+.-++.|+.||
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence 568899999999999999999999999999999999998863 234444788999999
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
++.++++..|+++++.|+..+.....++..+...+..+.
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888876
No 15
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=98.54 E-value=4.2e-07 Score=65.96 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---C--------Ccee-------------eeecceeeeecHhHHHH
Q 032018 25 MRSELNQIYSKITELEMEASEHSLVINAIKPLDP---S--------RKCY-------------RMIGGVLVERTISEVLP 80 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~---d--------r~~y-------------rlVG~VLVe~tv~Ea~~ 80 (148)
|+++++.+.+++..|...+.|+..++++|+.++. + ..+| .++.|+.|+.|.++|+.
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~ 80 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE 80 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence 3456677888888888888888888888887754 2 2233 88999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+++|++.|+..++.+.+++..+..++..+...+.
T Consensus 81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776553
No 16
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.011 Score=44.55 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS-RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI 93 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d-r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i 93 (148)
-|+-+++|-++-...-.+...+...-.++.-.+-+.+++.-+++| .-|==.||.|.+--..+.+..-|++.++.+.+.|
T Consensus 18 DQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i 97 (131)
T KOG1760|consen 18 DQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI 97 (131)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence 455788888888877777777777777777788888888888877 4444468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 94 ARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 94 ~~l~~ql~~~~kel~~~~~k 113 (148)
+.++.....+..+|.+++.-
T Consensus 98 ~~les~~e~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 98 EELESELESISARMDELKKV 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 17
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.055 Score=41.93 Aligned_cols=117 Identities=14% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCcCccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------------
Q 032018 2 AGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP----------------------- 58 (148)
Q Consensus 2 ~~~~~~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~----------------------- 58 (148)
|.-..+..=...+.+++-+=-+++.++++-+...++.|-.-..-+...++.|+.+.+
T Consensus 2 a~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d 81 (153)
T KOG3048|consen 2 AEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSD 81 (153)
T ss_pred CCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceecc
Confidence 333333333456777777777888889999988888888877777777777776622
Q ss_pred -CCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 59 -SRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 59 -dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
++.+.-.+-|..||.|.++++.....++++|.+.+++++.-+.++..-......-++-++
T Consensus 82 ~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv 142 (153)
T KOG3048|consen 82 NSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKV 142 (153)
T ss_pred ccceeEeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233335667899999999999999999999999999999999888877666554444333
No 18
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.70 E-value=0.0076 Score=45.10 Aligned_cols=99 Identities=13% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----Cc------e-eeeecceeeeecHhH---HHH---
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS----RK------C-YRMIGGVLVERTISE---VLP--- 80 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----r~------~-yrlVG~VLVe~tv~E---a~~--- 80 (148)
...++++|+.+++.+...++.|..++......+.++..+-.. .. + |-+..++.|+-++.+ |+=
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 456889999999999999999999999999999998777532 22 1 234557888777743 332
Q ss_pred -------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 81 -------AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 81 -------~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.+++-+++|+..++.|++++..+.+.+..++..+.-
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988763
No 19
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.02 Score=42.21 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARL 96 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l 96 (148)
++..+-..-|+++..+.-|+..++-.+.-..+.-.+|..+-++..+|+.+|..++..++.-+...++......+..|+.|
T Consensus 7 ~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaL 86 (114)
T KOG3501|consen 7 QLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEAL 86 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666667778888888888888888888888888888888889999999999999999988888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032018 97 NEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 97 ~~ql~~~~kel~~~~~k~~ 115 (148)
++.-.=+++...+-...++
T Consensus 87 qkkK~YlEk~v~eaE~nLr 105 (114)
T KOG3501|consen 87 QKKKTYLEKTVSEAEQNLR 105 (114)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666666555444433
No 20
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.96 E-value=0.032 Score=40.86 Aligned_cols=94 Identities=11% Similarity=0.185 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee--eecceee--------eecHhHHH-------------
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR--MIGGVLV--------ERTISEVL------------- 79 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yr--lVG~VLV--------e~tv~Ea~------------- 79 (148)
++|..+++.+.+++..|..++.+....+.+++..-+.=.-++ -...+|| +-++.+.-
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 688999999999999999999999999999988753111111 1345777 44444443
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..+++-+++++.+++.+++++..+.+.+..+++.+..
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988763
No 21
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.17 Score=40.42 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------------------CCCCceeeeecc
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL---------------------------DPSRKCYRMIGG 68 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------------~~dr~~yrlVG~ 68 (148)
.-+...|+++.-=..++..++..|...+-+.+.-|+-+..+ ++|.+|-=++..
T Consensus 40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn 119 (187)
T KOG3313|consen 40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN 119 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence 44455555555555566777777777777776666554333 334566678999
Q ss_pred eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
|++|-+++||..-|++++....+.++.++..+.-++.++...
T Consensus 120 VMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTt 161 (187)
T KOG3313|consen 120 VMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTT 161 (187)
T ss_pred eEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceee
Confidence 999999999999999999999999999999999888887643
No 22
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=94.51 E-value=0.15 Score=36.49 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
..+.+..+++.+..+.+.|..++.+.+.-+.|...+-+. +..+. .||=..--==+..++++-+..++.+++.++
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG---~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG---NVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh---hHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999999999988876322 22222 233222222245678888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032018 91 EVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~ 111 (148)
..++.+.+++.+++.+|.+++
T Consensus 84 ~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 84 RQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876
No 23
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=94.18 E-value=0.24 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=38.1
Q ss_pred eecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018 65 MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 65 lVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
+.-+-.|.++.+.|+..|..|++++..-|.+|++++..-+.++
T Consensus 56 lG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 56 LGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred hCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445789999999999999999999999999999999877664
No 24
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.41 Score=36.91 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeec---ceee--------eecHhH----------
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIG---GVLV--------ERTISE---------- 77 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG---~VLV--------e~tv~E---------- 77 (148)
...+++|-.+++.+.+++..|.+++...+..+.+|...-.+=.-++..| .+|| +-.+.+
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence 3567888999999999999999999999999988887766655566555 3444 444444
Q ss_pred ---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 78 ---VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 78 ---a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
|...+++=+++|+++++.|++.+++++..+.++-..+.
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~ 125 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999987776
No 25
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.85 E-value=0.35 Score=35.81 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
..+.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+. .+.+ -++|=..--.=+..++.+=+..++.++..++
T Consensus 15 ~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~V---G~vlv~qd~~e~~~~l~~r~E~ie~~ik~le 91 (121)
T PRK09343 15 QLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIV---GNLLVKVDKTKVEKELKERKELLELRSRTLE 91 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh---hHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999998876432 3333 2233222333456788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 91 EVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+..+.+.+++.+.+..|.++...+.
T Consensus 92 kq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 92 KQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998887765
No 26
>PRK11637 AmiB activator; Provisional
Probab=93.45 E-value=1.5 Score=38.44 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
...+++++++++..+..++..+..++++...-++.|..== .....-+..++..+..++..|+.++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi---------------~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI---------------SQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544433333321100 0124455666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcccccC
Q 032018 98 EALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
.++..+++++...++.++-++..
T Consensus 110 ~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 110 ASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543
No 27
>PRK11637 AmiB activator; Provisional
Probab=92.43 E-value=2.9 Score=36.68 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
..++++..+++++++++..+..++..++.++.....-+..+..-= .+...-+..++.+++.++..
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i---------------~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL---------------RETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555444444333332110 12344455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 93 IARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 93 i~~l~~ql~~~~kel~~~~~ 112 (148)
|..++..+....+.+.....
T Consensus 112 I~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665554443
No 28
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=92.33 E-value=1.1 Score=31.13 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
.+.+..+|+.+..++..+..++..++.-+.|...+-+.-.-.-.=..||=...--=+...+.+-+..++..++.++..++
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998887666222222356776666666778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 032018 95 RLNEALAAKKKEISD 109 (148)
Q Consensus 95 ~l~~ql~~~~kel~~ 109 (148)
.+.+++.+.++.+..
T Consensus 87 ~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 87 YLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 29
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.06 E-value=0.95 Score=32.69 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
..+.+..+++.+..+++.+-.++.+.+.-+.|.+.+-+. ++.+- ++|=..---=+..++.+=+..++.+++.++
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG---~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVG---NLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhc---hhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888887776332 33332 233111222244677778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 91 EVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~ 110 (148)
+.++.+.+++.+++..|.++
T Consensus 88 k~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 88 RQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765
No 30
>PRK14011 prefoldin subunit alpha; Provisional
Probab=91.86 E-value=1.2 Score=34.27 Aligned_cols=96 Identities=11% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCcee----eeecceeeeecHhHH-------------
Q 032018 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP----LDPSRKCY----RMIGGVLVERTISEV------------- 78 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~dr~~y----rlVG~VLVe~tv~Ea------------- 78 (148)
.+++++.-.++.+.++++.|..++.-.+.++.++.. |++...-- =+.+++.|+-++.+.
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 467888889999999999999999999998877643 44322211 255667777777663
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
-.++++=+++++.+++.|++....+...++++...+.
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~ 119 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEIT 119 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999887766
No 31
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=91.82 E-value=0.44 Score=30.04 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=23.4
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+..||+..|.+..++|+..|+.+..++..++++-..+-..|
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999988877665544
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=90.91 E-value=5.6 Score=37.48 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAA 102 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~ 102 (148)
..+...+..+...+..+...+.+.+..++.|....|.+++ -|.=|-+.-..+++......++.|+..+..++..+..
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~ 477 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777777788888765543332 4445555566677777788888888888888777777
Q ss_pred HHHHHHHHHH
Q 032018 103 KKKEISDFEA 112 (148)
Q Consensus 103 ~~kel~~~~~ 112 (148)
+.+++..+..
T Consensus 478 l~~~~~~~~~ 487 (880)
T PRK03918 478 LRKELRELEK 487 (880)
T ss_pred HHHHHHHHHH
Confidence 7766665433
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=90.86 E-value=3 Score=39.46 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
..+.-..+..++.++..+...+..++..+..+...++.++.+=.+..|+ +-|-=+-...+.+++..+...+..+...++
T Consensus 407 ~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp-~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (880)
T PRK02224 407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP-ECGQPVEGSPHVETIEEDRERVEELEAELE 485 (880)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCcCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 4455677788899999999999999999999999999987533456775 233333344444556566666666665666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032018 95 RLNEALAAKKKEISDFEA 112 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~~ 112 (148)
.+..++..+..+++.+..
T Consensus 486 ~le~~l~~~~~~~e~l~~ 503 (880)
T PRK02224 486 DLEEEVEEVEERLERAED 503 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555555554433
No 34
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=90.46 E-value=1.1 Score=34.02 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=45.6
Q ss_pred eeecceeeeec--------------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 64 RMIGGVLVERT--------------ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 64 rlVG~VLVe~t--------------v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..++|++|++| ++|.+..|+..-.||...+-+++.-+++-.+.+.-++..+++
T Consensus 58 ~~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 58 HALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 56889999999 577788888888999999999999999999999988887764
No 35
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=90.44 E-value=5 Score=28.75 Aligned_cols=94 Identities=15% Similarity=0.293 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h-------------cCCCC-----CCcee--eeecc
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA------I-------------KPLDP-----SRKCY--RMIGG 68 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee------L-------------~~l~~-----dr~~y--rlVG~ 68 (148)
.+.+..+++.|++++..+..++.+++.-+.+.+.+-+. + .+-+. +..|| +-+..
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e 87 (129)
T cd00890 8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE 87 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence 34566777777777777777777777777777666532 0 03222 45555 33332
Q ss_pred eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
....+++-+..|+++++.+++.++.+..++..+...++..
T Consensus 88 --A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 88 --AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2467888888888888899999999988888888887764
No 36
>PRK01156 chromosome segregation protein; Provisional
Probab=90.13 E-value=6.2 Score=37.61 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
+...+..|...+..+.+.+..+...+.+.+.+++.|+ . ..+|=.-..+.= +.-..+.+......++.++..++.++
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~--~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-G--QSVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIE 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--CCCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555 2 245666555555 66677788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032018 98 EALAAKKKEISDFEAKY 114 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~ 114 (148)
..+..+.+++..+....
T Consensus 490 ~~~~~l~~~~~~~~~~~ 506 (895)
T PRK01156 490 IEVKDIDEKIVDLKKRK 506 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87777777666554433
No 37
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=3.2 Score=31.09 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
..+++..+++.+--+.+++-.++.+++.-+.|++.+-+- -+.+ +.-.|++=-+. +...+++=+..|+.|+..|+
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~V--G~llvk~~k~~-~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKV--GNLLVKVSKEE-AVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHh--hhHHhhhhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888899999999999999998876543 1111 24455553333 34578888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032018 91 EVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+..+++.++++.++..|.+.-.
T Consensus 91 kQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 91 KQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988876543
No 38
>PRK01203 prefoldin subunit alpha; Provisional
Probab=88.63 E-value=3.2 Score=31.52 Aligned_cols=94 Identities=14% Similarity=0.253 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCC------ceeeeecceeeeecHhHHH-------------H
Q 032018 24 SMRSELNQIYSKITELEMEASEHSLVINAIKP----LDPSR------KCYRMIGGVLVERTISEVL-------------P 80 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~dr------~~yrlVG~VLVe~tv~Ea~-------------~ 80 (148)
.+-.+++-+.+++..|.+++.-.+.++.++.. +..-. ...=+.|++.|+-++.+.. .
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 46789999999999999999999988887744 22211 0113556667776666544 4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
.+++++++|+..++.|++-+..+...+..+...++--
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l 120 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV 120 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999988753
No 39
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=88.02 E-value=11 Score=29.46 Aligned_cols=86 Identities=10% Similarity=0.235 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHH
Q 032018 16 QIVANMYTSMRSELN--------QIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKE 87 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q--------~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e 87 (148)
...+..|+....+++ .+..+++.++..-.......++|+.+.+ | .--.+..|.++++
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~d---------P------~RkEv~~vRkkID 94 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLAD---------P------MRKEVEMVRKKID 94 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------c------hHHHHHHHHHHHH
Confidence 345666666655543 5677777777777777777777775532 1 2334678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 88 GIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++..++.+-...+++++++..|.+.||-
T Consensus 95 ~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 95 SVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888874
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.74 E-value=7.8 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
++..|+...+.+-..+..++.++.+++..++.-.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444445555555554444443
No 41
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=85.25 E-value=9.8 Score=26.10 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=55.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~ 91 (148)
.|.+..+-..++.+++.+..|...+..+...+.++..+.+-...++ ..| -..++..|.+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~--------------------~~~-y~~KL~~ikk 71 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFD--------------------LDP-YVKKLVNIKK 71 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------------------hhH-HHHHHHHHHH
Confidence 4777888888899999999999999888888888777644332221 122 3566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 92 VIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 92 ~i~~l~~ql~~~~kel~~~~ 111 (148)
++..+...+..+++++..++
T Consensus 72 rm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 72 RMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777766553
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=84.80 E-value=6.8 Score=36.93 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 032018 81 AVQRNKEGIEEVIARLNEAL 100 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql 100 (148)
.+..++..++..+..+..++
T Consensus 311 ~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 311 EIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 43
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=84.58 E-value=9.1 Score=32.07 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR 64 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yr 64 (148)
....+|..|++.++.+...+..|++.+.|.+.=|+.++.-.++...++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~ 224 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD 224 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 467889999999999999999999999999999999988776665553
No 44
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.22 E-value=5.3 Score=26.64 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=36.1
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++-+..|+.++.|.+..|+.|+..+...+++|..++..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999988887765
No 45
>PRK00736 hypothetical protein; Provisional
Probab=83.51 E-value=5.9 Score=26.53 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=36.2
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
..+-+..|+.++-|.+..|+.|++.+..-+++|..++..+..-
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999998888888776653
No 46
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=83.08 E-value=19 Score=27.73 Aligned_cols=100 Identities=8% Similarity=0.094 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CCCC-CceeeeecceeeeecHhHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP----------LDPS-RKCYRMIGGVLVERTISEVLPA 81 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----------l~~d-r~~yrlVG~VLVe~tv~Ea~~~ 81 (148)
|.+.-...+|..+|.|+.....=+...+--+++.-.-++-=.. +++. +.+..+.-++.++-+..||+..
T Consensus 30 ~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf 109 (157)
T KOG3047|consen 30 PDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKF 109 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHH
Confidence 3444455666667766666665555554444433222222111 1333 4444899999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
.+.+.+.|....++|.+.-..+...|-=+-.
T Consensus 110 ~DRK~dlLkel~ekLqKdsmkiKa~ihMLLa 140 (157)
T KOG3047|consen 110 CDRKMDLLKELMEKLQKDSMKIKADIHMLLA 140 (157)
T ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999888888877777766654443
No 47
>PRK00295 hypothetical protein; Provisional
Probab=82.68 E-value=6.7 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=35.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++-+..|+.++.|.+..|+.|++.+...+++|..++..+.-
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578899999999999999999999999888888877664
No 48
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.26 E-value=12 Score=30.01 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=39.7
Q ss_pred CCceeeeecceeeeec----HhHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 59 SRKCYRMIGGVLVERT----ISEVLPAV--QRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 59 dr~~yrlVG~VLVe~t----v~Ea~~~L--e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
.-.+|-+.|||||=-. ..|....- ...+..|+..+..|+.++..+++.++++-++++-.
T Consensus 75 E~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 75 ELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4789999999998322 22322221 22345566677778888888888888887777765
No 49
>PRK04325 hypothetical protein; Provisional
Probab=81.10 E-value=7.7 Score=26.39 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=36.1
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..+-+..|+.++.|.+..|+.|++.+...+++|..++..+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688899999999999999999999999999988877654
No 50
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=80.58 E-value=7.6 Score=24.50 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeec
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIG 67 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG 67 (148)
..|+++...|..++..|+...+-++.|.=--+.-.=..++|+..|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~g 46 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTAG 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccCC
Confidence 468899999999999999999999999544444333567777654
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.90 E-value=20 Score=34.03 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032018 25 MRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKK 104 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ 104 (148)
|...+.....++..+|.+|.+-+.....-+ .+.-|-+..- ..++.|.-..+..|+..|+.++++|...+..++
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee-----~~aar~~~~~--~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEE-----EKAARALAQA--QATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----Hhhhhccccc--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455556666655554432211 1222222211 234448888899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 032018 105 KEISDFEAKY 114 (148)
Q Consensus 105 kel~~~~~k~ 114 (148)
+++..+..+.
T Consensus 566 e~~~~~e~~~ 575 (697)
T PF09726_consen 566 EQIRELESEL 575 (697)
T ss_pred HHHHHHHHHH
Confidence 9998888766
No 52
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.72 E-value=31 Score=28.68 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee----eee-----cceeee-------ecHhHHH
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY----RMI-----GGVLVE-------RTISEVL 79 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y----rlV-----G~VLVe-------~tv~Ea~ 79 (148)
+++..++..+..+++....=+..||.+|.-.......-....++...- +.+ +|=+.. ..-..++
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 345566667777777777777777777766654433322222221110 111 011111 4567789
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
|.|..+.+-...+...|++++.....++..++.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877766665555555555444444444443
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.94 E-value=8.5 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
...-..+-.+|.++..+....+++..++.....-+..++.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp ----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccchhhh
Confidence 3344555566666666666666666666666655555554
No 54
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.46 E-value=21 Score=25.16 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
.+.++-.+-++...+..++..|..+.++...-+..+..-. +-...|..+...|...+..++
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------------------~~~~~l~~e~~~lk~~i~~le 87 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-------------------EDAEELKAEVKELKEEIKELE 87 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------------------CCTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666677777777777777666666655532 334455666677777777777
Q ss_pred HHHHHHHHHHHHHH
Q 032018 98 EALAAKKKEISDFE 111 (148)
Q Consensus 98 ~ql~~~~kel~~~~ 111 (148)
.++..+..++..+-
T Consensus 88 ~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 88 EQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776654
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.21 E-value=39 Score=31.74 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
+..+++..+...|..+....+..++.|+.+|.+.+.-+......+|. .||.-++....+-+..|.++++.|...
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~p------a~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPP------AGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc------ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888889999999998877655554433332 377777766666666677777666654
Q ss_pred HH
Q 032018 93 IA 94 (148)
Q Consensus 93 i~ 94 (148)
+.
T Consensus 103 lq 104 (617)
T PF15070_consen 103 LQ 104 (617)
T ss_pred HH
Confidence 43
No 56
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.77 E-value=12 Score=25.38 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=35.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++=+..|+.++.|.+..|+.|++.+...+++|..++..+.-
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678899999999999999999999999888888877654
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.72 E-value=19 Score=37.16 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeec-ceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIG-GVLVERTISEVLPAVQRNKEGIEEVIARL 96 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG-~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l 96 (148)
+-.+++.++.++..+...+..++.++..+...+..|..... +-| +-|=.....+-+.+...+.+.++..+..+
T Consensus 388 lEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~------~~~~~~~SdEeLe~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 388 AEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQ------LCGLPDLTADNAEDWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666665555431 223 33444557888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 032018 97 NEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 97 ~~ql~~~~kel~~~~~k~~i~i 118 (148)
+.++...+..+..+.+.++..+
T Consensus 462 E~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 462 EQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888643
No 58
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.60 E-value=29 Score=26.47 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH---
Q 032018 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE--- 98 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~--- 98 (148)
+..|..++..+..++..|..+.+....-|..|...+++ ....+.+..|+..++.|+..+..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-------------~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-------------EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33344444444444444454444444455555555532 12334444555555555555555543
Q ss_pred -----HHHHHHHHHHHHHHHhc
Q 032018 99 -----ALAAKKKEISDFEAKYK 115 (148)
Q Consensus 99 -----ql~~~~kel~~~~~k~~ 115 (148)
....+.+....|.+.+.
T Consensus 141 ~vs~ee~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 141 PVSPEEKEKLEKEYKKWRKEWK 162 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544443
No 59
>PRK04406 hypothetical protein; Provisional
Probab=77.46 E-value=12 Score=25.69 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=35.1
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..+=+..|+.++.|.+..|+.|++.+...+++|..++..+.-
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999888877664
No 60
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.22 E-value=24 Score=31.26 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032018 24 SMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~ 103 (148)
.+..+++.|..++..+..++.+++..+..|..+.. ..-......+....+...+..+...++.|..++..+
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~---------~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK---------QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555431 111233566777788888888888888888888888
Q ss_pred HHHHHHH
Q 032018 104 KKEISDF 110 (148)
Q Consensus 104 ~kel~~~ 110 (148)
+..+...
T Consensus 402 ~~~l~~~ 408 (451)
T PF03961_consen 402 KEELERS 408 (451)
T ss_pred HHHHHhh
Confidence 8888887
No 61
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.14 E-value=55 Score=29.43 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=62.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCceeeeecceeeeecHhHHHHHHHHhHHH
Q 032018 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK-PLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEG 88 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~-~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~ 88 (148)
..++.+.++-.++..++.++..+..++.-++.++.=.+..-.... ...+ .| . -++.-+ ....+....+..++..
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-~-~~~~~~-~~~~~~~~~~~~~~~~ 142 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKD--SA-K-RNEPDL-KEWFQAFDFNGSEIER 142 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--cc-c-cCCCCH-HHHHHHHHHHHHHHHH
Confidence 345677777788888888888888877777777743333221110 0000 01 0 011111 1355667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 89 IEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...+..++.++.++++++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 143 LLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877764
No 62
>PRK02119 hypothetical protein; Provisional
Probab=76.51 E-value=13 Score=25.24 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=35.3
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++=+..|+.++.|.+..|+.|++.+...+++|..++..+.-
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999888888877654
No 63
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.07 E-value=21 Score=34.86 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=17.7
Q ss_pred HhHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHH
Q 032018 75 ISEVLPAVQRNKEGIEE-------VIARLNEALAAKKKEIS 108 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~-------~i~~l~~ql~~~~kel~ 108 (148)
++.+...|++.++.|++ .|+.++.|++++...++
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445555555555554 45555555555555444
No 64
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.95 E-value=13 Score=24.29 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
..|+.++..|+..+..++++.+.+.+.++++.+..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777666554
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.15 E-value=45 Score=26.94 Aligned_cols=78 Identities=5% Similarity=0.186 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINA-IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee-L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
...+..+++++..+..++..+..+.+....-+.. +.. .+.....|+++...|...+..+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ-------------------SDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665554433322211 111 22224446666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 032018 98 EALAAKKKEISDFEAKYK 115 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~ 115 (148)
.....++.++..++....
T Consensus 153 ~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 153 KKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665443
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.82 E-value=43 Score=29.83 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
....|..++.++..+..++..++.++.....-++.++...+ ..+..+++.++.+......+.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~------------------~~i~~l~~e~~~l~~~~~~l~ 233 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG------------------ENIARKQNKYDELVEEAKTIK 233 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777666655555554321 224444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 032018 98 EALAAKKKEISDF 110 (148)
Q Consensus 98 ~ql~~~~kel~~~ 110 (148)
.++..++.++..+
T Consensus 234 ~~l~~l~~~i~~l 246 (562)
T PHA02562 234 AEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 67
>PHA01750 hypothetical protein
Probab=73.61 E-value=19 Score=24.57 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=31.3
Q ss_pred eecHhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 72 ERTISE-VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~E-a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
++...+ +...+...+++|..++..++.....++.++.+++++..
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344333 45567778888888888888888888888888777653
No 68
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=73.57 E-value=32 Score=24.93 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee-----------eeecceeeeecHhHH-------------
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY-----------RMIGGVLVERTISEV------------- 78 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y-----------rlVG~VLVe~tv~Ea------------- 78 (148)
++++..++.+...+..|..++......++++..+-..=.-+ =+.+++.|+-++.+.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 34555666666666666666666666666655443321111 123334444433322
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
--.+.+-+++++.+++.+++++..+.+.+..+++.++
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~ 118 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQIN 118 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555566666666666666666666666665554
No 69
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.15 E-value=23 Score=23.09 Aligned_cols=48 Identities=10% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhcCCCCCCceeeee
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEH--------SLVINAIKPLDPSRKCYRMI 66 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~--------~~VleeL~~l~~dr~~yrlV 66 (148)
-.+++.++.++..+..+...|+.++... +.+-+.|.-+.|+-.+|+++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~~ 78 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKIP 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeCC
Confidence 3344444444444444444444444433 12222444445666666543
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.06 E-value=62 Score=28.82 Aligned_cols=33 Identities=6% Similarity=0.284 Sum_probs=19.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
......|.+++..|+..++.++..+..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~ 330 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD 330 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777776666666666654433333
No 71
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.02 E-value=26 Score=30.07 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC----CCceeeeecceeeeecHhHHHHH-----HHHhHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAI-KPLDP----SRKCYRMIGGVLVERTISEVLPA-----VQRNKE 87 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL-~~l~~----dr~~yrlVG~VLVe~tv~Ea~~~-----Le~r~e 87 (148)
+-..|..|+.++..+..++.+.+.-+.+|.+||-.= .+-+. +... ..++++|-+.-..+++. |+-|+.
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~--~~~~~~vs~e~a~~L~~aG~g~LDvRLk 222 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVG--HPKRALVSQEAAQLLESAGDGSLDVRLK 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccC--CCcccccchhhhhhhcccCCCCHHHHHH
Confidence 344555566666666666666666677777776542 11110 1111 56788888877777764 467788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 88 GIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.|-..-+.|..|+..++.++++.+.+-+
T Consensus 223 Kl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 223 KLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888888888888888887765544
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.57 E-value=44 Score=27.01 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 032018 31 QIYSKITELEMEA 43 (148)
Q Consensus 31 ~l~~q~~~Le~ql 43 (148)
.+..++..+..++
T Consensus 97 ~le~el~~l~~~l 109 (206)
T PRK10884 97 DLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.48 E-value=46 Score=33.33 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=28.9
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
++..=++.+++.++.|+.+++.++.++..+..+++.+.+++.
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777777777777777766543
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=72.27 E-value=48 Score=31.49 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=15.5
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
...+.+..++..++.++...+.+...+..+..++.++
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.35 E-value=49 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
.+.++..+..+..++..+...+.+.+.-++..+.-.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555666666666666666666666666654433
No 76
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=71.34 E-value=56 Score=30.55 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
....+.+++.++.+++.+...+..-+...+.....++.+.+- .+|..| =+-.=|++.++.+..+.|.+.+.
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Y--------t~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAY--------TRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHH--------HHHHHHHHHhHHHHHHHHHHHHH
Confidence 344667777777777777777777777766666666666664 457776 12245888888888888887765
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032018 95 RLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~~k~ 114 (148)
.... ++++|+.+..++
T Consensus 513 DTr~----lQkeiN~l~gkL 528 (594)
T PF05667_consen 513 DTRE----LQKEINSLTGKL 528 (594)
T ss_pred HHHH----HHHHHHHHHHHH
Confidence 4433 444444444333
No 77
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.19 E-value=35 Score=34.37 Aligned_cols=45 Identities=9% Similarity=0.054 Sum_probs=27.8
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
...+..+-+..+...++.+...++.++..+..+..++..++..+.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666665553
No 78
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=69.31 E-value=97 Score=28.74 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
.-..+..+.+++..+.+++.+|+.++++.+.-++.|+..
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344667777777777777777777777777666665553
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=69.28 E-value=47 Score=25.15 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
+=..+-++-.++..|..+++.|+.++.....-+.+++.
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666555555444
No 80
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.04 E-value=52 Score=25.55 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=27.0
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+.....++.++.++.++++.+...+.++++.+.+.++|+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445555666677777777777777777777777766663
No 81
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.90 E-value=44 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+...|..........-..|++.+..+...+.++...++
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444555555555555544443
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.97 E-value=14 Score=34.48 Aligned_cols=99 Identities=13% Similarity=0.182 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP--SRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~--dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
+...+++.|+.+++.+..++..++.++..+..-+..+..--. ...+=++-.-+-+....-+.+|+-+.++..|+..++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677777777777777777777777665554443322110 122224444555666677778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 032018 95 RLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~~k~~ 115 (148)
.-...+..+..+.+.++..+-
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~ 425 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLI 425 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 877777777777766655443
No 83
>PRK00846 hypothetical protein; Provisional
Probab=66.72 E-value=29 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=36.4
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+..+=+..|+.++-|.+..|+.|++.+...+..|..++..+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999999999888887665
No 84
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=66.60 E-value=63 Score=26.31 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=54.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecH-hHHHHHHHHhHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTI-SEVLPAVQRNKEGIEE 91 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv-~Ea~~~Le~r~e~L~~ 91 (148)
..++..-.++++...+...+..++..|+.++.+...-+..+....++..++..-..+=+.+.. .+....|...++.|..
T Consensus 66 ~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~a 145 (202)
T PF06818_consen 66 LELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRA 145 (202)
T ss_pred HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHH
Confidence 344455677888888888899999999999999998888873333222222222222222221 3455666666666666
Q ss_pred HHHHHHHHHHH
Q 032018 92 VIARLNEALAA 102 (148)
Q Consensus 92 ~i~~l~~ql~~ 102 (148)
.|.....+.+.
T Consensus 146 eL~~er~~~e~ 156 (202)
T PF06818_consen 146 ELQRERQRREE 156 (202)
T ss_pred HHHHHHHhHHH
Confidence 66554444443
No 85
>PRK14127 cell division protein GpsB; Provisional
Probab=66.19 E-value=29 Score=25.54 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=38.9
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.-.|++.+..|....+.+...+..|+.++..++.++.+|+....
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44688888999999999999999999999999999999998555
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=66.05 E-value=55 Score=27.81 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
++..+..+-.++..+..++......+.+++.++.+.+.-+++++. -+..+...+..++
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~----------------------~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEE----------------------QKQELLAEIAEAE 264 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555444443322 2233333344444
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhcccccCCC
Q 032018 91 EVIARL----NEALAAKKKEISDFEAKYKIRIRKPE 122 (148)
Q Consensus 91 ~~i~~l----~~ql~~~~kel~~~~~k~~i~i~~~~ 122 (148)
..++.+ ...+..+..++..++..+|++|.+-.
T Consensus 265 ~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 265 KIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 333332 23577888999999999999987743
No 87
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.86 E-value=9.9 Score=32.97 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=40.7
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
...++.+.+.-......-.++|+.++..+.+++...+.++..|+.++++--
T Consensus 155 ~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~ 205 (444)
T TIGR03017 155 QAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVS 205 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344445555555556667889999999999999999999999999999853
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.81 E-value=86 Score=26.86 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcccccCC
Q 032018 99 ALAAKKKEISDFEAKYKIRIRKP 121 (148)
Q Consensus 99 ql~~~~kel~~~~~k~~i~i~~~ 121 (148)
.+..+..++..++..++++|.+-
T Consensus 272 Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 272 EIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHhCCeeEec
Confidence 34455556666666777776654
No 89
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=65.69 E-value=33 Score=27.83 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
-.+....|..+..++..+..++..+...+.-.+.....|+.++.+.. -+-|+|-.+-..|..+|+
T Consensus 137 ~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~---------------~IQ~NLvtr~g~l~~El~ 201 (213)
T PF13093_consen 137 SPEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE---------------NIQPNLVTRDGELEAELE 201 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc---------------ccccccCCCCchHHHHHH
Confidence 34578899999999999999999999999999999999987776555 233344455555555555
Q ss_pred HHHHHHH
Q 032018 95 RLNEALA 101 (148)
Q Consensus 95 ~l~~ql~ 101 (148)
++.--+.
T Consensus 202 rmR~Lla 208 (213)
T PF13093_consen 202 RMRMLLA 208 (213)
T ss_pred HHHHHHH
Confidence 5544433
No 90
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=65.55 E-value=24 Score=23.00 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=23.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEA 43 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql 43 (148)
+.++..++.++.+++.++.++......+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~ 64 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIESRQERLESLNEQA 64 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777666666665433
No 91
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.14 E-value=59 Score=30.97 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
+.++..-.....-++..+..++++|.+++.+.+.++|+|+.+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444555667788899999999999999999999998764
No 92
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=63.36 E-value=1.1e+02 Score=27.17 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
+..+-.+-.+...+..++..|..+.+++..-+..+..-.. + ...|..+...|...++.+++
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~---------------~----~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE---------------D----AEALIAEVKELKEEIKALEA 87 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------c----HHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666677777777777777666655332111 1 12355566667777777777
Q ss_pred HHHHHHHHHHHHHHHhc
Q 032018 99 ALAAKKKEISDFEAKYK 115 (148)
Q Consensus 99 ql~~~~kel~~~~~k~~ 115 (148)
++..++.++..+-..+-
T Consensus 88 ~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 88 ELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 77777777777654443
No 93
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.33 E-value=18 Score=23.64 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
+..+.++++++..+..++..+..+..+.+.-++.|+.
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677889999999999999999988888888888843
No 94
>PLN02678 seryl-tRNA synthetase
Probab=62.48 E-value=1.2e+02 Score=27.38 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
++.++-.+-++...+..++..|..+.+.+...+..++.-. +-...|.++...|...|+.++
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-------------------~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-------------------EDATELIAETKELKKEITEKE 91 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777788888888888887777776543211 112445556667788888888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 032018 98 EALAAKKKEISDFEAKYK 115 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~ 115 (148)
.++..++.++.++...+-
T Consensus 92 ~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 92 AEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 888888888877665443
No 95
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.40 E-value=1e+02 Score=26.15 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
.+..-.+|..++.....+..++..|..++.+...=+ ..+.++++.+...|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~-----------------------------~~~~~~i~~~~~eik 83 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKI-----------------------------DELQKEIDQSKAEIK 83 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHH
Confidence 344455666677777777777777666665543322 234677888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018 95 RLNEALAAKKKEISDFEAKYKIRIRKP 121 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~~~k~~i~i~~~ 121 (148)
.+++++..++..|.+.++.|+-|.+..
T Consensus 84 ~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 84 KLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888877653
No 96
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=61.09 E-value=1.2e+02 Score=26.86 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
.+.++-.+-++...+..++..|..+.+.+..-+..+..- .++....|..+...|...|+.++
T Consensus 28 ~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~------------------~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 28 DLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQ------------------KKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------CcchHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777777777776666543211 11213456667778888888888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 032018 98 EALAAKKKEISDFEAKYK 115 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~ 115 (148)
.++..++.++..+-..+-
T Consensus 90 ~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 90 AALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 888888888887665554
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.93 E-value=1e+02 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP 58 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~ 58 (148)
....+.+..-+..+....+.|..++...+.+..++...++
T Consensus 169 ~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~ 208 (325)
T PF08317_consen 169 DKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQ 208 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH
Confidence 3444444445555555566666666666666666555543
No 98
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=60.20 E-value=13 Score=25.90 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=35.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
.|-.++++.+|+.|-..+..|...+..|...-.-+..+++.|..++
T Consensus 2 spLEq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE 47 (78)
T PF08656_consen 2 SPLEQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELE 47 (78)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 3567889999999999999999999888554555556677766664
No 99
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=60.10 E-value=1.1e+02 Score=27.60 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018 28 ELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 28 q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
|...+...+.+|+.++..|+..++.++. ...-+.+..+++.+...+..|...+..++.-+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~--------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL--------------------NPDDPELKSDIEELERHISSLKERIEFLENML 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc--------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888887776 23345667888888888999999888888888
Q ss_pred HHHHHHhccc
Q 032018 108 SDFEAKYKIR 117 (148)
Q Consensus 108 ~~~~~k~~i~ 117 (148)
..+.......
T Consensus 224 ~~l~~~~~~~ 233 (475)
T PF10359_consen 224 EDLEDSESSS 233 (475)
T ss_pred HHHhhhcccc
Confidence 8887665543
No 100
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=60.06 E-value=20 Score=30.66 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCce------eeeecceeeeecHhHHHHHHHHhH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKC------YRMIGGVLVERTISEVLPAVQRNK 86 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~------yrlVG~VLVe~tv~Ea~~~Le~r~ 86 (148)
..++.+..+|+.+..++..|..++..-+..|......|+.+-.-. ... |=..|-.+...-..+++|.+..+-
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n--~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~ 161 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKN--WEYYQELEKYIAAGELKLEELEAELLPALQADA 161 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcc
Confidence 467889999999999999999999999999998888888876542 222 234555555555666677766665
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 87 E---GIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 87 e---~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
+ .....+..++..+..+.+++..++....+.
T Consensus 162 ~~d~~~~q~~~~~~~~l~~leqRi~DL~~~~~va 195 (333)
T PF05816_consen 162 EGDQMDAQELADLEQALFRLEQRIQDLQLSRQVA 195 (333)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 223444555555555666665555544443
No 101
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.99 E-value=65 Score=29.58 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIY-SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~-~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
+....|..+++....|. ..+..++..+.+.+...+.++... --=.-.+..+.+..++..+..|...++.
T Consensus 57 qt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~k----------a~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 57 QTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKK----------AKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999988 778888888888777665554432 2223345677777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 032018 96 LNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 96 l~~ql~~~~kel~~~~~k~~i 116 (148)
|....+.-..++..++++|+-
T Consensus 127 L~~~e~~nr~~i~~l~~~y~~ 147 (560)
T PF06160_consen 127 LLESEEKNREEIEELKEKYRE 147 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888887777888877777763
No 102
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=59.89 E-value=20 Score=23.53 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
+|+.|+..|+.++...+...+..+.++..+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777777666666554
No 103
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.18 E-value=65 Score=29.87 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=21.2
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+.+++.+..+...+.+..++..+.+++.+++.++++++.
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~ 121 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQ 121 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555543
No 104
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.10 E-value=45 Score=21.38 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
..-+..|+.++..|+.....|...+..+..++..+...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455678888888888888888888888888888887653
No 105
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=58.96 E-value=46 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.282 Sum_probs=30.1
Q ss_pred cHhHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 74 TISEVLPAVQRNKEGIE----------EVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~----------~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+..++|.|-+|+..|. ..+..|+.+...+...+..|..-++
T Consensus 309 ~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~ 360 (388)
T PF04912_consen 309 PYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN 360 (388)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888777 4677777777777777777776543
No 106
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.70 E-value=1e+02 Score=25.35 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=34.4
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK-YKIR 117 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k-~~i~ 117 (148)
++.++...+...+.+...+.++-..+..+..++++++.. +++.
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556666667777777888888888999999999999999 7764
No 107
>PRK01156 chromosome segregation protein; Provisional
Probab=58.61 E-value=74 Score=30.42 Aligned_cols=31 Identities=26% Similarity=0.107 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 27 SELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 27 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
..+..+..++.+++..+.+++.-++++..+.
T Consensus 249 ~~~~~~e~~i~ele~~l~el~~~~~el~~~~ 279 (895)
T PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELE 279 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555554444444444443
No 108
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.39 E-value=94 Score=24.84 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCCCCCCceeeeecceeee-ecHhHHHHHHHHh
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA--------IKPLDPSRKCYRMIGGVLVE-RTISEVLPAVQRN 85 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee--------L~~l~~dr~~yrlVG~VLVe-~tv~Ea~~~Le~r 85 (148)
++++-..+...+..+..+......++.++.++..-.+. |..=++| |.-..|.+ ....+..+.|+..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~Ed-----LAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRED-----LARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777777777776655443 3333332 22222333 3467788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 86 KEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
++.+...+..|..++..++.++..++.+-+
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766
No 109
>PRK11519 tyrosine kinase; Provisional
Probab=58.22 E-value=15 Score=34.54 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=44.0
Q ss_pred eecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 65 MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 65 lVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
-+..+.++.+.+.-......-++||+.++..+..++...+..++.|+.++++
T Consensus 248 ~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 248 SITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455666666666666677888999999999999999999999999999997
No 110
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.09 E-value=1.1e+02 Score=28.03 Aligned_cols=84 Identities=10% Similarity=0.195 Sum_probs=53.2
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~ 91 (148)
..++..++.++++++.+++.+..+=..| +.||+.......+++. =|.+.+.-..+.+....+.+..
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l---~~eN~~L~~r~~~id~-----------~i~~av~~~~~~~~~~~~ql~~ 123 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEAL---KAENERLQKREQSIDQ-----------QIQQAVQSETQELTKEIEQLKS 123 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHH-----------HHHHHHHhhhHHHHHHHHHHHH
Confidence 3678889999999999999998776655 4455555555555542 1233333444555666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032018 92 VIARLNEALAAKKKEISD 109 (148)
Q Consensus 92 ~i~~l~~ql~~~~kel~~ 109 (148)
.+.++...+..++.++..
T Consensus 124 ~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 124 ERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666555543
No 111
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=57.91 E-value=1.2e+02 Score=26.60 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
.+.+...-.+.|+-++..+..++..++..+...+.++..-.
T Consensus 252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777665533
No 112
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.84 E-value=1e+02 Score=28.18 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS 59 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 59 (148)
...+....+|+.++++++.+......++.++...+--+++|+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 161 KAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 44556677788888888888888888888888899999999999876
No 113
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=57.60 E-value=26 Score=29.76 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=31.3
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+.+++..|+.|+..|+..|++|+..-+.++++|.
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emr 35 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMR 35 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999887
No 114
>smart00338 BRLZ basic region leucin zipper.
Probab=57.57 E-value=48 Score=21.26 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=32.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..-+..|+.++..|+.....|..++..+..++..+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556788888999999999999999999888888876553
No 115
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.23 E-value=16 Score=34.38 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=43.1
Q ss_pred ecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 66 IGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 66 VG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
+..+.++.+++.=.....+-++||+.++..+..++...+..++.|+.++++-
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~ 300 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV 300 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455566666666666677799999999999999999999999999999874
No 116
>PRK09039 hypothetical protein; Validated
Probab=56.68 E-value=1.3e+02 Score=25.94 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
+....|...+.+...|.++|..|..++...+..|+..+.
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666665555555554444
No 117
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.61 E-value=1.7e+02 Score=29.99 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=11.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHH
Q 032018 76 SEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
.+.+..++++++.++..++.+.
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555553
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.11 E-value=1.7e+02 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 25 MRSELNQIYSKITELEMEASEHSLV 49 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~V 49 (148)
.+.++..+..++..++.++.+...=
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~ 413 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKK 413 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666665554443
No 119
>PF13514 AAA_27: AAA domain
Probab=56.09 E-value=50 Score=32.66 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032018 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAI 53 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL 53 (148)
..+.....++..+..++..++.++.....-+..|
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666666666667776666666544443
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.84 E-value=74 Score=22.86 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhcCCCCCCceeeeecc
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEH--------SLVINAIKPLDPSRKCYRMIGG 68 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~--------~~VleeL~~l~~dr~~yrlVG~ 68 (148)
++..++..++++...+..+...|..++... +.+-+.|.-+.|+-.+|+++.+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCCC
Confidence 344444444444444444444444444333 2355568888899999998877
No 121
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=55.53 E-value=16 Score=23.05 Aligned_cols=30 Identities=10% Similarity=0.347 Sum_probs=19.1
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 032018 71 VERTISEVLPAVQRNKEGIEEVIARLNEAL 100 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql 100 (148)
+...+.+.+..|..+++.+.++++.|+.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556666777777777777766666554
No 122
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.23 E-value=51 Score=26.00 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
...|...+..++.+|..|..-|..+++...+|+.+++|..
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~ 70 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITP 70 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCch
Confidence 3556667777899999999999999999999999999964
No 123
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=54.91 E-value=6.8 Score=28.24 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.+...|..|..+...+..++..|..++.++..-.+.|..
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455666666666666666666666666666554444443
No 124
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=54.70 E-value=66 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
.-..+++++.++..+...+..+..++...+.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.45 E-value=1.3e+02 Score=25.11 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=19.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.+-+..|.++++.|++.+..+...+...+..+.+++..+-.
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555444444433
No 126
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.09 E-value=1.2e+02 Score=24.58 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=34.9
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+.+-+...+.|.++.+..+..|..++..+..+|..|+.+|.
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888999999999999999999988875
No 127
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.59 E-value=20 Score=19.46 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 28 ELNQIYSKITELEMEASEHS 47 (148)
Q Consensus 28 q~q~l~~q~~~Le~ql~E~~ 47 (148)
+++.+...|..|+.+|+++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 56778889999999999875
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.14 E-value=92 Score=23.13 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=24.7
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 7 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEH 46 (148)
Q Consensus 7 ~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~ 46 (148)
+.+....-++.+...+.++..++..+..++..|+.+..+.
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDEL 49 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666777777777777766666666665543
No 129
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.08 E-value=1.4e+02 Score=26.88 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
.-..+..|+.++..+..++..++.++.=.+..+.-|+.+.+. .-+.+++-+ .. -..-...+.+-.+++...+..+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREG--LTEPIKDSA-KR-NEPDLKEWFQAFDFNGSEIERLL 144 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcccccccc-cc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999998888888888888777531 112333221 11 11234567777888888899999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 032018 98 EALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~i 116 (148)
.++.++..++.++++++..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~ 163 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSE 163 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9888888888888887763
No 130
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.94 E-value=31 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
....++++.++..+..++...+..+..|+.+|++-
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~ 203 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF 203 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34567999999999999999999999999999974
No 131
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.71 E-value=1.1e+02 Score=28.14 Aligned_cols=98 Identities=12% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhh-cCCCCCCceeeeecceeeeecHhHHHHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYSK----------ITELEMEASEHSLVINAI-KPLDPSRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q----------~~~Le~ql~E~~~VleeL-~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
..+-...+.|..++..+.+. ...++.++.+....++.+ ..+......|..+=.-+ ....+-+..+++
T Consensus 320 ~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~l--eel~e~leeie~ 397 (569)
T PRK04778 320 EHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEEL--EEILKQLEEIEK 397 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHHHHHHH
Confidence 34444455555555555555 555555555555555532 23333333343221111 112223334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 85 NKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
....|...+..|.+........+..|+.++.
T Consensus 398 eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 398 EQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666666666554
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.68 E-value=89 Score=28.18 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAI 53 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL 53 (148)
..-.++++|+.++..+-..+..++.++.+...=++.+
T Consensus 56 ~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~ 92 (420)
T COG4942 56 EQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL 92 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555555555555555555554444443
No 133
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=52.60 E-value=38 Score=22.09 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 89 IEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
++.++.+|++.+..+++++..+..+++-
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777888888888888877777764
No 134
>PF14282 FlxA: FlxA-like protein
Probab=52.20 E-value=49 Score=23.73 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHS 47 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~ 47 (148)
+.++...+.+.|+.+++.|..+|.+|..+..+-.
T Consensus 45 ~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 45 DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777777777778788877777776654
No 135
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=51.90 E-value=67 Score=21.15 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+..|++|+..|+.+|.+++..+..+..-..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999888776543
No 136
>smart00150 SPEC Spectrin repeats.
Probab=51.84 E-value=13 Score=24.36 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEA 43 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql 43 (148)
+.++..++.++.+++.++.++......+..+...-
T Consensus 27 ~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~ 61 (101)
T smart00150 27 GKDLESVEALLKKHEALEAELEAHEERVEALNELG 61 (101)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677888888888888888877666666665543
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=51.63 E-value=1.1e+02 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
..++...++.+..+..++.+++..+.+...-++.++..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777666666553
No 138
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=51.39 E-value=2.1e+02 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
++.....|..+...+..++..|+.++.....-.+.|.
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556666666666654444444433
No 139
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.17 E-value=1.1e+02 Score=29.01 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.+.........+..+....+.+...+..|+..+.|.+.-++.|+.
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777777777777778888777777777766666543
No 140
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=51.04 E-value=1.5e+02 Score=24.99 Aligned_cols=43 Identities=5% Similarity=0.061 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
+.+-.+..+...+...+..|-+.+.=+.++.+|.+..|+.|+.
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~ 155 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLET 155 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666554
No 141
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=50.59 E-value=49 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=16.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
=+..|++.++.+...+..++.++..+...++.+
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554443
No 142
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.51 E-value=62 Score=24.34 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+..|..|++.+...++.+.+-.+.+++++.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~ 92 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVT 92 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333
No 143
>PF13514 AAA_27: AAA domain
Probab=50.32 E-value=76 Score=31.41 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=26.5
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
..+.++.+-.+-+..+..++..+...+..+...+..+..++..
T Consensus 232 ~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 232 EVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred CcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666666666666666666655543
No 144
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.21 E-value=41 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 87 EGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
..|.+.-.+|+..+++++.++++....++|.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4567777888888888888888888888875
No 145
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.14 E-value=1.7e+02 Score=29.19 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=21.7
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+..+.+..+...++.++..+..+...+..+..+++.+...+
T Consensus 874 ~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554444
No 146
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=50.11 E-value=55 Score=28.56 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccccCCCC
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEA---KYKIRIRKPES 123 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~---k~~i~i~~~~~ 123 (148)
..++++++.|+..+..+.+.+..+...+.++.. ..||+|.|-++
T Consensus 154 s~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPE 200 (370)
T PF02994_consen 154 SELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPE 200 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES---
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCC
Confidence 444445555555555555544444444444433 47899988544
No 147
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.10 E-value=35 Score=27.96 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=34.8
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
|--=..+..++...|++|-+.|+..|.+|..+|-.++.+|...
T Consensus 10 ~k~p~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 10 PKEPPPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred CCCCChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334456788999999999999999999999988888888765
No 148
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=49.73 E-value=35 Score=22.86 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKK 105 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~k 105 (148)
+..|++|+-.|+.+|++++.++..+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356889999999999999988877653
No 149
>PF14182 YgaB: YgaB-like protein
Probab=49.20 E-value=90 Score=21.84 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032018 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALA 101 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~ 101 (148)
|+.|=.+.-....++--|++++.-|.-+-.+|..+.. ++.+.+|...|.++++.++
T Consensus 2 F~~LV~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~------------------------ea~l~~i~~EI~~mkk~Lk 57 (79)
T PF14182_consen 2 FDKLVSEQMKTMDKLLFLQSELERCQEIEKELKELER------------------------EAELHSIQEEISQMKKELK 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHhHHHHHHHHHHHHHHHH
Confidence 6667777777788888899999988888888888765 5677889999999999999
Q ss_pred HHHHHHHHHH
Q 032018 102 AKKKEISDFE 111 (148)
Q Consensus 102 ~~~kel~~~~ 111 (148)
.+.+-+++.-
T Consensus 58 ~Iq~~Fe~QT 67 (79)
T PF14182_consen 58 EIQRVFEKQT 67 (79)
T ss_pred HHHHHHHHHH
Confidence 9888877544
No 150
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=49.19 E-value=1.7e+02 Score=25.09 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHh-------H
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRN-------K 86 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r-------~ 86 (148)
+.+++-..+..+...+...+-.-.+|..+.+-.---+++|++.=. +..|.+..+... +
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le---------------e~eE~~~~~~re~~eK~~el 142 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE---------------ELEETLAQLQREYREKIREL 142 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888887777777777776654444444443210 111111111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhcccccCC
Q 032018 87 EGIEEVIARLNEALAAKKKEIS---DFEAKYKIRIRKP 121 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~---~~~~k~~i~i~~~ 121 (148)
+.+...++.|..++..++.++. ++.++|+|-|.+.
T Consensus 143 Er~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 2333334444444444444443 5568999999885
No 151
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.98 E-value=95 Score=26.97 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
++...|+...+.|...-..+..+++.++..+..+
T Consensus 347 ~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~l 380 (388)
T PF04912_consen 347 DLQSQLKKWEELLNKVEEKFKENMETIEKNVKKL 380 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 152
>PF14282 FlxA: FlxA-like protein
Probab=48.80 E-value=98 Score=22.17 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
..++..|...|..|..||..+..+..+-...
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777666666554433
No 153
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.44 E-value=95 Score=30.82 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CC-CCceeeeecceeeeecHhHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL--------DP-SRKCYRMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l--------~~-dr~~yrlVG~VLVe~tv~Ea~~~Le~ 84 (148)
.+..+....+.+.-+.++|+.-|+-++.++.|++.=|+.+..- .. -..+|+ +|.-| ++.-+++..++.
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~-~~~~L--~nk~~~lt~~~~ 183 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM-IGEDL--HDKNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH-HHHHH--hhhhhHHhHHHH
Confidence 3445677778888888899999999999999999888876532 11 123443 33333 344556666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 85 NKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
....+-....++++++..+-+++.
T Consensus 184 q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555544
No 154
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=48.32 E-value=1.8e+02 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
...++.++..++.|+++.++++..++.+..+++
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 155
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=47.82 E-value=1.5e+02 Score=24.17 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
+-.....+.+.+-.+...-..+......++..+.+|.. =++.-+.|-+|.+..+..|.
T Consensus 114 LeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd----------------------KLkEaE~rAE~aERsVakLe 171 (205)
T KOG1003|consen 114 LEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD----------------------KLKEAETRAEFAERRVAKLE 171 (205)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------------HHhhhhhhHHHHHHHHHHHc
Confidence 44444444555555555555555555555555544433 35555777788888888888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 032018 98 EALAAKKKEISDFEAKYK 115 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~ 115 (148)
+...+++..+...+.+|.
T Consensus 172 ke~DdlE~kl~~~k~ky~ 189 (205)
T KOG1003|consen 172 KERDDLEEKLEEAKEKYE 189 (205)
T ss_pred ccHHHHHHhhHHHHHHHH
Confidence 888888888887777764
No 156
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=47.80 E-value=29 Score=28.92 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPES 123 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~~~ 123 (148)
-+...=+...+.++..+..+.+|+...+..+++|..+|+-.|+.++.
T Consensus 15 ~~~ky~~~g~~l~e~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei~knsq 61 (249)
T KOG3341|consen 15 AAKKYKEVGTELAEQQLVQMSKQLEVFQEALEEFARKHKTEIRKNSQ 61 (249)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 34455566677889999999999999999999999999998887543
No 157
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.78 E-value=54 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=28.4
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+.|..|+...|++|.+.|++.|++|+.++....+.+.
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888877766665554
No 158
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.19 E-value=92 Score=21.41 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.0
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.+.=+-.|+-|+.|=++.|+.|+..+......+++++.+++--+
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~ 49 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888889999999999999999999888877543
No 159
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=1.3e+02 Score=22.97 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeeeecceeeeecHhHHHHHHHHhH
Q 032018 11 EPVNEQIV---ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-SRKCYRMIGGVLVERTISEVLPAVQRNK 86 (148)
Q Consensus 11 ~~~~~qe~---~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-dr~~yrlVG~VLVe~tv~Ea~~~Le~r~ 86 (148)
+.+.+... ....-.+..++.....++..|+.-..|+.+.-+.=..+|= =--||=.+-.=-+.--.++.+.+|.+.+
T Consensus 18 DQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i 97 (131)
T KOG1760|consen 18 DQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI 97 (131)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence 34555554 3444567777888888888888899999888777444442 1346655555556667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032018 87 EGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel 107 (148)
+.++...+.+..++..+.+-+
T Consensus 98 ~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 98 EELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888765
No 160
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=47.01 E-value=1.3e+02 Score=23.20 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeee--cHhHHHHHHHHhHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVER--TISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~--tv~Ea~~~Le~r~e~L~~ 91 (148)
..++...+|...+..+..+..++..|....+|...=+. =++.+||.+.+ +...-+..|+..++....
T Consensus 17 ~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~-----------~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~ 85 (148)
T COG2882 17 EEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLN-----------EKLKSGVSAAQWQNYQQFISQLEVAIDQQQS 85 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777776653211 14556777644 344555555555554444
Q ss_pred HHHHHHHHHHHH
Q 032018 92 VIARLNEALAAK 103 (148)
Q Consensus 92 ~i~~l~~ql~~~ 103 (148)
.+..+..+++..
T Consensus 86 ~~~~~~~~ve~~ 97 (148)
T COG2882 86 QLSKLRKQVEQK 97 (148)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.89 E-value=29 Score=32.49 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=40.4
Q ss_pred ecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 66 IGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 66 VG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
+..+.++.+.+.-......-.++|+.++..+.+++...+.+++.|+.+|++-.
T Consensus 176 la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~ 228 (754)
T TIGR01005 176 IAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLM 228 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 33344444444444555566789999999999999999999999999999853
No 162
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.66 E-value=1.1e+02 Score=24.34 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVIN 51 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vle 51 (148)
+-.+|..++.....+..++..|+..+.+.+.-..
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555544444
No 163
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.43 E-value=60 Score=27.50 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=26.9
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.+.+.-+.++.+.+..|+..|++|..++.++..++...++++
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i 75 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI 75 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777766666666666555544
No 164
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.26 E-value=2.5e+02 Score=27.87 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARL 96 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l 96 (148)
+++.+.+.-|...-.+..+..+|+.++.-.+-=+..|..-=-|-+| =-.|...++..+.+.++..-.+|+.|
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~--------~~tt~kt~ie~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV--------DITTQKTEIEEVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee--------ccchHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444445555555544444333333321111111 23567888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 032018 97 NEALAAKKKEISDF 110 (148)
Q Consensus 97 ~~ql~~~~kel~~~ 110 (148)
..++++.+..+..+
T Consensus 492 qarikE~q~kl~~l 505 (1118)
T KOG1029|consen 492 QARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888777654
No 165
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.03 E-value=3.2e+02 Score=27.78 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=19.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+...++..+...+..++..+..+..++..++.+++
T Consensus 308 ~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~ 343 (1311)
T TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT 343 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555666666666665555555544
No 166
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.01 E-value=37 Score=32.36 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=27.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
....+++-.++.+|+.++..--.++..++.++.+...
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888887754443
No 167
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=45.93 E-value=98 Score=22.37 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.....+...+.+...+++....-+. . .....+.+..|..++..|+..+..++..+..+...+..+.+.
T Consensus 49 ~~lr~~G~~L~~I~~~l~~~~~~~~--~----------~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 49 LRGKRLGFSLEEIRELLDLYDPPGG--N----------RKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHCCCCHHHHHHHHHhhccCCc--h----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888876443211 0 112446677888888888888888888888888777776654
No 168
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.83 E-value=1.2e+02 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032018 95 RLNEALAAKKKEISDF 110 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~ 110 (148)
++++.+.+++++|.++
T Consensus 332 ~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 169
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.03 E-value=1.4e+02 Score=28.14 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCceee-eecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032018 27 SELNQIYSKITELEMEASEHSLVINAIKPLDP----SRKCYR-MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALA 101 (148)
Q Consensus 27 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~----dr~~yr-lVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~ 101 (148)
+..+.+..++..++....+..--+.+++..+. .|+.|+ |=+.| .-....+..++.+...+...++.++..++
T Consensus 228 ~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~---nK~~~y~~~~~~k~~~~~~~l~~l~~Eie 304 (581)
T KOG0995|consen 228 KYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDV---NKFQAYVSQMKSKKQHMEKKLEMLKSEIE 304 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666665543 244443 33322 12344556666677777777777777777
Q ss_pred HHHHHHHHHHHH
Q 032018 102 AKKKEISDFEAK 113 (148)
Q Consensus 102 ~~~kel~~~~~k 113 (148)
.++.+++.++.+
T Consensus 305 ~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 305 EKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 170
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=44.91 E-value=61 Score=28.92 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=41.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
..+++++..+||.+..++..|...+..-+..|.....+||.|..-
T Consensus 129 ~~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~~~ 173 (386)
T COG3853 129 KSSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLYEK 173 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999988653
No 171
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=44.80 E-value=1.7e+02 Score=27.30 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc-CCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLV-INAIK-PLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~V-leeL~-~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
+....|+.|++++...-..+..|..-|.....+ ++..+ .+++|.. .-...+++-+=.++..++
T Consensus 407 e~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~---------------~~~~~vnn~ki~l~~~ie 471 (543)
T COG1315 407 EIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKE---------------SLLTAVNNTKITLRNSIE 471 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcH---------------HHHHhhhhhhccHHHHHH
Confidence 468899999999999999999998888888887 33333 3444433 223333444444455555
Q ss_pred HHHHHHHHHHHHHHHH
Q 032018 95 RLNEALAAKKKEISDF 110 (148)
Q Consensus 95 ~l~~ql~~~~kel~~~ 110 (148)
+...++..++.+++..
T Consensus 472 ki~~~l~~lqe~le~~ 487 (543)
T COG1315 472 KIKAELEGLQEELEVV 487 (543)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 5555555555555544
No 172
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=44.54 E-value=74 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=28.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
|...|.++.++..++.||+ .+-....++.|...+.++|.
T Consensus 2 gsLeP~iE~LInrInelQQ-------aKKk~~EELgEa~~l~eaL~ 40 (134)
T PF15233_consen 2 GSLEPQIEDLINRINELQQ-------AKKKSSEELGEAQALWEALQ 40 (134)
T ss_pred CCccchHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHH
Confidence 5667999999999999998 33345567777777776643
No 173
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.10 E-value=2.5e+02 Score=28.81 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCce-----e----eeecc-eeeeecHhHHHHHHHHhHHHH
Q 032018 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKC-----Y----RMIGG-VLVERTISEVLPAVQRNKEGI 89 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~-----y----rlVG~-VLVe~tv~Ea~~~Le~r~e~L 89 (148)
.+.-..++.+..+.+++..|+.++.+...=+.++++++.+... - .|-+- .--+++.+|.+..++.+-+.|
T Consensus 398 ~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~ 477 (1293)
T KOG0996|consen 398 REDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGI 477 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444566777788889999999999999999999998765321 1 00000 001233444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 90 EEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 90 ~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
...+..+++.+...-.++++.+.++++
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~v 504 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDV 504 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444443
No 174
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.69 E-value=68 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=24.2
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
|..+.+.-|+.+++.+...|+.|+.++..+..++.
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv 116 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVV 116 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44566777777777777777777777766665444
No 175
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.60 E-value=1.8e+02 Score=29.30 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeeeec----ceee--eecHhHHHHHHHHh
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-SRKCYRMIG----GVLV--ERTISEVLPAVQRN 85 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-dr~~yrlVG----~VLV--e~tv~Ea~~~Le~r 85 (148)
.+.+++-.+++.+...++.......+++.++..+...++.+..--. -+..|+..- .... .+-..+....++.+
T Consensus 600 ~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 679 (1201)
T PF12128_consen 600 ASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER 679 (1201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888887777776554311 111111110 0000 22234555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 86 KEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
++.+...+..+..++..+.+++..|...+.-.
T Consensus 680 ~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~ 711 (1201)
T PF12128_consen 680 KEQIEEQLNELEEELKQLKQELEELLEELKEQ 711 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888877777766543
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.84 E-value=2.7e+02 Score=29.12 Aligned_cols=38 Identities=8% Similarity=-0.001 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
+...+|+++.+.+..+.+.+..++..+.|.+.-+..|-
T Consensus 1010 qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 1010 QAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444555555555555555555555555555553
No 177
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=42.77 E-value=1.1e+02 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
..+|..+..-...+...+..|.....+..--+.-|..
T Consensus 34 ~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~ 70 (99)
T PF10046_consen 34 SLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQ 70 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444444444433
No 178
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.61 E-value=1e+02 Score=26.99 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHH
Q 032018 42 EASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEA 99 (148)
Q Consensus 42 ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~q 99 (148)
.+.=.+.+++++ +++ ++ =++.+-+.++.+..++++++.++..++.|...
T Consensus 216 ~~~Yf~~l~~~f---~d~--a~----~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 216 SLEYFENLYDAF---GDK--AK----FFLAELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp -HHHHHHHHHHC---CCC--EE----EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc---CCC--eE----EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666 323 32 46788999999999999999998877776664
No 179
>PRK14127 cell division protein GpsB; Provisional
Probab=42.57 E-value=94 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA 52 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee 52 (148)
+.+++..|..|..+...|..++..|+.++.++..=+..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34577788888888888888888888888887775443
No 180
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=42.47 E-value=37 Score=30.35 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
|..|.+.|...+++++++++.++.+|+.+.+.|.-++.
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ 441 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFT 441 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466778888888888888888888888877776654
No 181
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.40 E-value=1.5e+02 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=8.4
Q ss_pred HHHHHHHHhhcCCCCCCceee
Q 032018 44 SEHSLVINAIKPLDPSRKCYR 64 (148)
Q Consensus 44 ~E~~~VleeL~~l~~dr~~yr 64 (148)
.+...-++.|... .+.+.||
T Consensus 69 ~~i~e~~~kl~~~-~~~r~yk 88 (126)
T PF09403_consen 69 AEIEEKIEKLKQD-SKVRWYK 88 (126)
T ss_dssp HHHHHHHHHHHHH-GGGSTTH
T ss_pred HhHHHHHHHHHHh-cchhHHH
Confidence 3333333334433 2455554
No 182
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=42.30 E-value=46 Score=26.85 Aligned_cols=38 Identities=8% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.|..+...|...++.+++++..++.+++.++..|.-++
T Consensus 190 ~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf 227 (239)
T PF07195_consen 190 SITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQF 227 (239)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777666665544
No 183
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.67 E-value=2.1e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 21 MYTSMRSELNQIYSKITELEMEASEHSLVINA 52 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee 52 (148)
.|..++..+..+-.++..++.++.+...=++.
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444333
No 184
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=41.62 E-value=2.8e+02 Score=26.36 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=35.3
Q ss_pred ecceeeeecHhHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 66 IGGVLVERTISEVLPAVQRNKEGIE-----------EVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 66 VG~VLVe~tv~Ea~~~Le~r~e~L~-----------~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
.|-||+. ++..+..|.+.++.++ ..|..++++++.+...++++.++++-+
T Consensus 283 ~~~~L~~--kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 283 LGSVLNQ--KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445554 6666666666666655 577888888888888888888887754
No 185
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=41.19 E-value=33 Score=26.03 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCCCCceeeeecceeeeec--HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 47 SLVINAIKPLDPSRKCYRMIGGVLVERT--ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 47 ~~VleeL~~l~~dr~~yrlVG~VLVe~t--v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..|..+|+.|..=..||+=-+......+ ..--+..+..-+...+..+++|+.++..+..++..++.++.-
T Consensus 48 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 48 EAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655666643332222111 222235556666677788888889998888888888887753
No 186
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.05 E-value=1.9e+02 Score=26.40 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITEL 39 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~L 39 (148)
+..+++...++....+++.+...+..+
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444443
No 187
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=40.94 E-value=1.9e+02 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032018 85 NKEGIEEVIARLNEALAAKKKE 106 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~ke 106 (148)
|+..|...++.+.+.+...+++
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~ 92 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRER 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 188
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=40.76 E-value=77 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=18.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
.+.+..|+++++.++..+..+..++.....++.-
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555443
No 189
>PHA03162 hypothetical protein; Provisional
Probab=40.64 E-value=74 Score=24.37 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCCcCccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHH
Q 032018 1 MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLP 80 (148)
Q Consensus 1 ~~~~~~~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~ 80 (148)
||+-.-+-++..++++++.+++++|+=+=..|-.++..=-.- ..++.|. +|-...++-.+.
T Consensus 1 ~~~~~k~~pk~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~-----------~~~p~d~--------~LTp~qKea~I~ 61 (135)
T PHA03162 1 GAGGSKKCPKAQPTMEDLAAEIAKLQLENKALKKKIKEGTDD-----------DPLPGDP--------ILTPAAKEAMIG 61 (135)
T ss_pred CCCCcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------CCCCCCc--------cCCHHHHHHHHH
Confidence 455444455556899999999998887776666655221110 2344444 455555555555
Q ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032018 81 AVQRNKE-----GIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 81 ~Le~r~e-----~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
..-.++. .|+..+..+..-+. .+.++++....+.|||-
T Consensus 62 s~v~~Lts~A~kKIe~KVr~~t~~~v-Tk~e~e~aL~~lt~Rid 104 (135)
T PHA03162 62 AATAALTRQAAKKIEAKIRHETLKAT-TKEEFEAAIANIRFRVD 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHhcCeeeEE
Confidence 5544443 23333333333332 34567777777777763
No 190
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.64 E-value=74 Score=26.93 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.5
Q ss_pred eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
--|++.+.+++..+..+++.++..+..+......+..+|++.+
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk 203 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKK 203 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888877777777666666555555554433
No 191
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.62 E-value=40 Score=28.23 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=41.7
Q ss_pred eeeeecceeeeecHhHH-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018 62 CYRMIGGVLVERTISEV-----------------LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 62 ~yrlVG~VLVe~tv~Ea-----------------~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
++...|++|++..++|+ ++...+++..|...-..+...+..++.++.+.+..+..+-..
T Consensus 141 vA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 141 VALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred HHHhccCcccccccccCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678888888877666 345567777777777777777777777777777777665433
No 192
>PRK10869 recombination and repair protein; Provisional
Probab=40.51 E-value=2.6e+02 Score=25.64 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=36.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 032018 12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS 59 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 59 (148)
-...+....+|+.+..++..+.........++...+--+++|+.+++.
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~ 203 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQ 203 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345556677777778888888777777777778888888888888765
No 193
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.41 E-value=2.9e+02 Score=27.95 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=29.8
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.+..++...|.++++.++..+..-...+..+++++.+.+..+
T Consensus 472 ~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 472 MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777666553
No 194
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.23 E-value=60 Score=32.58 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 20 NMYTSMRSELNQIYSKITEL 39 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~L 39 (148)
.+|+..|.++..+-.++..|
T Consensus 684 ~~~~~~q~el~~le~eL~~l 703 (1174)
T KOG0933|consen 684 KELRAIQKELEALERELKSL 703 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 195
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.11 E-value=2.8e+02 Score=25.63 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS--RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d--r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
+..+|++.++++.+.++++.= -..+.....+|+.+++| |++| .+-..|+..++.+....|.+.+..
T Consensus 344 ~~~IqeleqdL~a~~eei~~~---eel~~~Lrsele~lp~dv~rk~y--------tqrikEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESN---EELAEKLRSELEKLPDDVQRKVY--------TQRIKEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhcCCchhHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 566666666666666655432 23456677888999886 5555 233456666666666666554443
No 196
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.09 E-value=97 Score=20.11 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=26.9
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032018 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~ 103 (148)
+-.|.+--.+|+..-..+++.+...+..+...+..+
T Consensus 30 ~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 30 ENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp TTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677888888888888888888888887765
No 197
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.05 E-value=97 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
++.+++.|+..+..-.+..+.++.+++.+.+-+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443333
No 198
>PRK07857 hypothetical protein; Provisional
Probab=39.96 E-value=1.5e+02 Score=21.71 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=32.5
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 8 ERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLV 49 (148)
Q Consensus 8 ~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~V 49 (148)
.+.+-.++.++-.++..+-.++-.|..++..+-.++.+++.-
T Consensus 23 ~p~~~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 23 DPLSDAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556777788888888888888888888888888877753
No 199
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.62 E-value=70 Score=26.60 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=36.0
Q ss_pred CceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 032018 60 RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEAL-AAKKKEISDFEAKY 114 (148)
Q Consensus 60 r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql-~~~~kel~~~~~k~ 114 (148)
+.++|..||.+|..+. .+.|..+++.|...-.+..... ......+++|..+|
T Consensus 67 ~~G~rFlgG~aVP~~~---~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~ 119 (257)
T PF11348_consen 67 KVGVRFLGGYAVPEDK---AEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRH 119 (257)
T ss_pred HcCCcccceeEcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5678899999999765 4455666666666665555544 56677777777764
No 200
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=39.49 E-value=84 Score=23.71 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=33.6
Q ss_pred ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
-++-++.++++...+...+..++..+..|..+.+.+..++.
T Consensus 11 ~ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 11 AIVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778999999999999999999999999888887764
No 201
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.44 E-value=1.5e+02 Score=24.14 Aligned_cols=79 Identities=14% Similarity=0.254 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI 93 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i 93 (148)
+.+++-.+|-.++.++..+...+..|..-+..-+ +++|+ =.++.++..++..|
T Consensus 126 ~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~--------------------------~~~d~-l~ie~~L~~v~~eI 178 (262)
T PF14257_consen 126 SSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK--------------------------TVEDL-LEIERELSRVRSEI 178 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CHHHH-HHHHHHHHHHHHHH
Confidence 3445556666666555555555554444333211 34443 34566666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018 94 ARLNEALAAKKKEISDFEAKYKIRIRKP 121 (148)
Q Consensus 94 ~~l~~ql~~~~kel~~~~~k~~i~i~~~ 121 (148)
++++.++..+....+= ..++|.+...
T Consensus 179 e~~~~~~~~l~~~v~~--sti~i~l~~~ 204 (262)
T PF14257_consen 179 EQLEGQLKYLDDRVDY--STITISLYEP 204 (262)
T ss_pred HHHHHHHHHHHHhhce--EEEEEEEEec
Confidence 7666666666555431 2445555543
No 202
>COG5293 Predicted ATPase [General function prediction only]
Probab=39.44 E-value=2.1e+02 Score=26.65 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------HHHHh-h-cCCCCCCceeeeecce---eeeecHhHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASE--HS------------LVINA-I-KPLDPSRKCYRMIGGV---LVERTISEV 78 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E--~~------------~Vlee-L-~~l~~dr~~yrlVG~V---LVe~tv~Ea 78 (148)
.+..|+---+++..+-+..+.+..++.| ++ .-+.+ . .-.++--++|--||+. +|+++..+|
T Consensus 246 tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v 325 (591)
T COG5293 246 TLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHV 325 (591)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHH
Confidence 3444444445555666666666666666 22 11222 1 1111125667777755 577888777
Q ss_pred HH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LP----AVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 79 ~~----~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
.. .++.|.+++...|.+++..|+..+.++..+-+
T Consensus 326 ~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~ 363 (591)
T COG5293 326 IAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGK 363 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 57899999999999999999988888776544
No 203
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=39.24 E-value=29 Score=27.26 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.4
Q ss_pred eecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018 65 MIGGVLVERTISEVLPAVQRNKEGIEEVIA 94 (148)
Q Consensus 65 lVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~ 94 (148)
.=|++|++-+-.+.+..|+++++.|++.+.
T Consensus 141 ~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 141 QCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999999999999988765
No 204
>PLN02320 seryl-tRNA synthetase
Probab=39.21 E-value=3.1e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
+.++-.+-++...+..++..|..+.++...-+.. +..+ +-...|..+...|...+..++.
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~------------------~~~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG--KLEP------------------SERQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCC------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666665555433 1110 1124455566677777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 032018 99 ALAAKKKEISDFEAK 113 (148)
Q Consensus 99 ql~~~~kel~~~~~k 113 (148)
++..++.++.++-..
T Consensus 152 ~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 152 DLVKLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777765543
No 205
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.93 E-value=2e+02 Score=22.93 Aligned_cols=83 Identities=11% Similarity=0.196 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
+-..+..++.....+-..+...+.++.-.+--+..|..+..|+ +..| ...|..+++.++..+..-+
T Consensus 73 Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-------------nL~e-ReeL~~kL~~~~~~l~~~~ 138 (194)
T PF15619_consen 73 LRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-------------NLAE-REELQRKLSQLEQKLQEKE 138 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------Cchh-HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666665555566666655443 3333 3556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032018 98 EALAAKKKEISDFEAKY 114 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~ 114 (148)
..+..+...++-....|
T Consensus 139 ~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 139 KKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 65555555555444433
No 206
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=38.83 E-value=1.4e+02 Score=21.93 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032018 21 MYTSMRSELNQIYSKITELE 40 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le 40 (148)
+|..|++.+..|...+..+.
T Consensus 10 ~l~DL~~rYs~L~s~lkKfk 29 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFH 29 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 207
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.83 E-value=1.8e+02 Score=22.32 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.|+..+..+..+..++..+..+|.+...-|+.|+.
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35557777888888999999999999999988888
No 208
>PRK11281 hypothetical protein; Provisional
Probab=38.62 E-value=3.9e+02 Score=27.12 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
+.+.+..+++...+.+++.+...++.+...=+++++.
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4444555566667778888888888888888888887
No 209
>PHA02675 ORF104 fusion protein; Provisional
Probab=38.39 E-value=1.5e+02 Score=21.17 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCCCceeeeecceeeeecHhHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 57 DPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE-------EVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 57 ~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~-------~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.+|..||-...| -+.++++=+-.|.+....+. ..|++|+.-++.+.+-|-.+-+|+.++.
T Consensus 19 n~~~~vy~ag~~--~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDVQT 85 (90)
T PHA02675 19 NDDNGVYAAGAP--SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKIDVQT 85 (90)
T ss_pred CCCCceeecCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceec
Confidence 446888877655 45566665555555544443 5778888888888888888888877653
No 210
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.38 E-value=2.1e+02 Score=23.30 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeec
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~t 74 (148)
..++.++...|+++...+..+..+++.-..|+....+-|....... |+.+..-.|-++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~--~~~i~A~Vi~~~ 128 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLD--YQFITARVISRS 128 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CceEEEEEEEeC
Confidence 4456677777777777777777777777777766666665544322 444444444433
No 211
>PF15294 Leu_zip: Leucine zipper
Probab=38.05 E-value=2.6e+02 Score=23.91 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.+..++.+.-........|+.+|++...+....+.
T Consensus 147 rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~ 181 (278)
T PF15294_consen 147 RLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG 181 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444444444555556666666666665544443
No 212
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.96 E-value=90 Score=25.29 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhcCCCC-CCceeeee--cceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 24 SMRSELNQIYSKITELEMEASE--------HSLVINAIKPLDP-SRKCYRMI--GGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E--------~~~VleeL~~l~~-dr~~yrlV--G~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
.|+.++..|-.++..++..... -.+|..+|+.|=+ -+.-++-. |..-...+ +..|.+-++.|+..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~----l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKN----LKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC----HHHHHHHHHHHHHH
Confidence 4556666666666666555543 2445555544411 01111111 22222223 34456667778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032018 93 IARLNEALAAKKKEISDFE 111 (148)
Q Consensus 93 i~~l~~ql~~~~kel~~~~ 111 (148)
+..|+.-|..++.+++.++
T Consensus 176 V~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888888888887764
No 213
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.82 E-value=1.3e+02 Score=23.91 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=24.1
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEA----------LAAKKKEISDFEAKY 114 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~q----------l~~~~kel~~~~~k~ 114 (148)
..|+++..+|+..+..|+..|+.|+.. -..+..+++.|...|
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777766666666555543 333444555555544
No 214
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.81 E-value=1.3e+02 Score=21.50 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 32 l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
.+.....+...++|.+.++.....-+ ..+..++...|..+.+.|+..++.+...+..+...+..++
T Consensus 48 ~I~~lr~~G~sl~eI~~~l~~~~~~~--------------~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (116)
T cd04769 48 FIKEARQLGFTLAELKAIFAGHEGRA--------------VLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLK 113 (116)
T ss_pred HHHHHHHcCCCHHHHHHHHhccccCC--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566677777777765433211 2455777888999999999999999998888887777665
No 215
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.78 E-value=1.2e+02 Score=21.39 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 35 KITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 35 q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
....+...+.|...+++....- ..+..+....|..++..|+..++.++..+..+...+..
T Consensus 52 ~lr~~G~sL~eI~~~l~~~~~~---------------~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (113)
T cd01109 52 CLRNTGMSIKDIKEYAELRREG---------------DSTIPERLELLEEHREELEEQIAELQETLAYLDYKIDY 111 (113)
T ss_pred HHHHcCCCHHHHHHHHHHHccC---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677778888777643221 12356677788888888888888888888777766643
No 216
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=37.58 E-value=1.1e+02 Score=25.00 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCCccHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHH
Q 032018 10 REPVNEQIVANMYT------SMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQ 83 (148)
Q Consensus 10 ~~~~~~qe~~~~~q------~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le 83 (148)
.-|+++-+-...++ .|...++.+..-.......+.++...|+.-..- |..+-...|.-.-..+-..+-..+.
T Consensus 6 ~lP~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~e--d~~~r~~~g~~W~r~~S~~~~~~l~ 83 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEERE--DEQLRAKYGERWTRPPSSELNASLR 83 (296)
T ss_dssp S--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSTTTCGSS-HHHHCHHHH
T ss_pred CCChHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCcCCCcHhhHHHHH
Confidence 45666665555544 444455555555555556666666666554443 2333333466444456677777899
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 84 RNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..+..+...+..-..-=..+...+..+...+.+
T Consensus 84 ~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~ 116 (296)
T PF13949_consen 84 KELQKYREYLEQASESDSQLRSKLESIEENLEL 116 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999888888888888888888877754
No 217
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.35 E-value=1.6e+02 Score=21.30 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=20.3
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
....+..+++++..+...++++...+.....++..++++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555555555555555443
No 218
>PRK00846 hypothetical protein; Provisional
Probab=36.90 E-value=1.4e+02 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 88 GIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
.....|++|..++..+..++.+.+
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555554444
No 219
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.65 E-value=1.2e+02 Score=26.36 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.=+..+++|+..++..+..+...+..+.+.+..+..++
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666655555443
No 220
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.65 E-value=3e+02 Score=24.27 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIY 33 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~ 33 (148)
.+..++.+++.++..+.
T Consensus 251 ~l~~~l~~l~~~l~~l~ 267 (498)
T TIGR03007 251 ELDGRIEALEKQLDALR 267 (498)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444555555555443
No 221
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.46 E-value=1.3e+02 Score=20.77 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSR 60 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr 60 (148)
..++++...|...++.|+++|.+...-..-.++++.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~k 40 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKK 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence 45677777788888888888888777644456665543
No 222
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.27 E-value=1.3e+02 Score=20.18 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
..+..|......++..+..+...+.....++..++..+
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555566666666666666666666655544
No 223
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=36.16 E-value=85 Score=31.34 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+..+...+..++..++.+..++....+++..+.
T Consensus 241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 273 (1163)
T COG1196 241 LEELEEELSRLEEELEELQEELEEAEKEIEELK 273 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 224
>PRK10698 phage shock protein PspA; Provisional
Probab=36.11 E-value=2.1e+02 Score=23.17 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINA 52 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee 52 (148)
+-.+|...+.....|..++..|+..+.+.+.=.++
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554443333
No 225
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.98 E-value=1.3e+02 Score=19.86 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=25.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.-+...+..++.|+..+-.-.+++..++..+..+..++.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777777777777777777777777766665
No 226
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.96 E-value=2.1e+02 Score=26.20 Aligned_cols=88 Identities=14% Similarity=0.244 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQ-IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 19 ~~~~q~Lq~q~q~-l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
...|..++++... .......++..+.+.+..++.++ +...=-.=.++.+.+..++.++..|...+..|.
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~----------f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~ 132 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFR----------FRKAKHEINEIESLLDLIEEDIEQILEELQELL 132 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888 45566777777777666554443 333333335667777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 032018 98 EALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 98 ~ql~~~~kel~~~~~k~~i 116 (148)
.+.++-..++..++.+|.-
T Consensus 133 ~~e~~nr~~v~~l~~~y~~ 151 (569)
T PRK04778 133 ESEEKNREEVEQLKDLYRE 151 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887763
No 227
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=35.86 E-value=2e+02 Score=22.09 Aligned_cols=85 Identities=14% Similarity=0.312 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHH-HHHHHHHHHHHHHH
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKE-GIEEVIARLNEALA 101 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e-~L~~~i~~l~~ql~ 101 (148)
..|+.-++.|..-+..|..-...+-..-.-|. .+++|-||-. -|+..|...|.+.++ .|...+.++++.+.
T Consensus 7 ~SL~~S~~lL~~Si~~L~~~~~D~pRL~kvL~----t~R~FeLvpe----~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~ 78 (153)
T PF08287_consen 7 SSLRSSVQLLQSSIETLDSGTSDFPRLTKVLQ----TTRHFELVPE----PDLQAAQQSLRDEIEPQINHLLDKAEKHLE 78 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHc----ccCcccccCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665543343 3788887753 455555555555544 34455555555555
Q ss_pred HHHHHHHHHHHHhc
Q 032018 102 AKKKEISDFEAKYK 115 (148)
Q Consensus 102 ~~~kel~~~~~k~~ 115 (148)
.++.+.+.++.++.
T Consensus 79 kL~Rr~~tL~ak~E 92 (153)
T PF08287_consen 79 KLQRREETLKAKCE 92 (153)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 228
>PRK10722 hypothetical protein; Provisional
Probab=35.65 E-value=89 Score=26.26 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 17 IVANMYTSM----RSELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 17 e~~~~~q~L----q~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
+--..|+.| ..++..+.++...|+.++.....=||.|.+++
T Consensus 162 eEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIE 206 (247)
T PRK10722 162 EERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIE 206 (247)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899 67888999999999999999999999888774
No 229
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=35.34 E-value=1.3e+02 Score=19.80 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 84 RNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+++..++.....++.++..+.+.+.++..
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555554443
No 230
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.32 E-value=1.5e+02 Score=22.75 Aligned_cols=39 Identities=15% Similarity=0.422 Sum_probs=33.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
+..|++.+..|...+++|......+.-++..|+.+|.--
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888999999999999999999999999988743
No 231
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.24 E-value=4.7e+02 Score=26.16 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=11.8
Q ss_pred cHhHHHHHHHHhHHHHHHHHHH
Q 032018 74 TISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
++++...+|...++.+.....+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555565555555544333
No 232
>PRK14158 heat shock protein GrpE; Provisional
Probab=35.07 E-value=1.4e+02 Score=23.93 Aligned_cols=41 Identities=5% Similarity=0.159 Sum_probs=32.1
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.++....|+.+++.++..++.+..++-.+..+++.|++...
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888888888888888888887776543
No 233
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.01 E-value=1.1e+02 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=13.4
Q ss_pred eeeecHhHHHHH---HHHhHHHHHHHHHHHHH
Q 032018 70 LVERTISEVLPA---VQRNKEGIEEVIARLNE 98 (148)
Q Consensus 70 LVe~tv~Ea~~~---Le~r~e~L~~~i~~l~~ 98 (148)
.++--+.|++.. |-+.++.|+..|..+..
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lra 292 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRA 292 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 344445555444 33345555554444443
No 234
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.67 E-value=93 Score=23.94 Aligned_cols=43 Identities=9% Similarity=0.275 Sum_probs=36.2
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+.++++......++.+...++.+.+.+..++..+...-.+.++
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgv 85 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGV 85 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEE
Confidence 6788888888888899999999999888888888877777665
No 235
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.53 E-value=1.5e+02 Score=23.09 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
++...++++|+.+...+-.++..+-..|.++...|..+=
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666667777776666553
No 236
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.44 E-value=3e+02 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 032018 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS 59 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d 59 (148)
...+.+..-+-.+......|..++.....+.++++..+|+
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~ 204 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH
Confidence 3334444444455566666666666666666666666653
No 237
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=34.42 E-value=4.5 Score=29.51 Aligned_cols=55 Identities=27% Similarity=0.288 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----CceeeeecceeeeecH
Q 032018 20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS----RKCYRMIGGVLVERTI 75 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----r~~yrlVG~VLVe~tv 75 (148)
...+.|+.++..+..+..+|+.+..+...|-+.-....|. -++||.+| |-++.+-
T Consensus 20 ~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG-I~~e~~~ 78 (118)
T PF08286_consen 20 SELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG-IELEYDE 78 (118)
T ss_dssp -----------------------HT------CCCCCHHCCCHHHHHHHHHCC-EEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc-EEEEecc
Confidence 3444444444445555555544444422221111111111 47889999 8777643
No 238
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=34.19 E-value=1.5e+02 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
|.+.++++..+.+.|+.++...+.++...+...
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667776666666666555443
No 239
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=34.11 E-value=2e+02 Score=21.60 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032018 22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALA 101 (148)
Q Consensus 22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~ 101 (148)
.++|+.++..+-.+.++|+.+.+ .++.+...-++ ..+..+...++..+......++.+..+++
T Consensus 22 ~~~l~~~i~~~d~el~QLefq~k---r~~~e~~~~~~--------------~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 22 LQELQEQIQQLDQELQQLEFQGK---RMIKEIKKQNA--------------QQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTSS--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcch--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888887764 55666666554 44555555556665555555555555555
Q ss_pred HH
Q 032018 102 AK 103 (148)
Q Consensus 102 ~~ 103 (148)
.+
T Consensus 85 qv 86 (131)
T PF11068_consen 85 QV 86 (131)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 240
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.04 E-value=3.6e+02 Score=24.42 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCce
Q 032018 27 SELNQIYSKITELEMEASEHSLVINAIKP-LDPSRKC 62 (148)
Q Consensus 27 ~q~q~l~~q~~~Le~ql~E~~~VleeL~~-l~~dr~~ 62 (148)
.+...+.+-+..|+.++.+.+.-|..|.. +.|++.-
T Consensus 279 ~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPq 315 (434)
T PRK15178 279 ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPL 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 45667888999999999999999998855 6776543
No 241
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=33.96 E-value=1.9e+02 Score=21.13 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEME 42 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~q 42 (148)
++..++..+.+|+.++.++......+..+...
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~ 62 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNEL 62 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 56678888888888888887666666555543
No 242
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.82 E-value=1.5e+02 Score=25.58 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=65.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC---CceeeeecceeeeecHhHHHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP----LDPS---RKCYRMIGGVLVERTISEVLPAVQ 83 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~d---r~~yrlVG~VLVe~tv~Ea~~~Le 83 (148)
.||+-++-+.=+||-.=-++-|..++-+-+..|.+-+.=+++|+. +-.| -.|.|+= ..=|+++-.
T Consensus 52 kPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE--------AQLALKEAR 123 (305)
T PF15290_consen 52 KPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE--------AQLALKEAR 123 (305)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 356666666666665555555555555555555555555555443 2222 4566642 233566667
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 84 RNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
+.|..|...|+.+...|.++-+-|++|=-.+||+
T Consensus 124 kEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQ 157 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQ 157 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhh
Confidence 7788899999999999999999999988888885
No 243
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.75 E-value=3.2e+02 Score=26.26 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+-....+.++.|...++.|...++.++.+++..+
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666544
No 244
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=33.74 E-value=3e+02 Score=23.48 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------C---CCCC------CceeeeecceeeeecHhHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK---------P---LDPS------RKCYRMIGGVLVERTISEV 78 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~---------~---l~~d------r~~yrlVG~VLVe~tv~Ea 78 (148)
..+.-|..-+.++ +...+..++.--.+...+|..|+ . +||+ ..|++..||+ ..+...
T Consensus 6 ~a~s~Y~erk~~l--v~~e~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~---~~l~~~ 80 (339)
T cd09238 6 KALSKYTEMVDEL--IRTEADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGL---AALEGE 80 (339)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccH---HHHHHH
Confidence 3444555444432 33335666666666666666543 2 3333 3477777774 556778
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPES 123 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~~~ 123 (148)
++.|.+-.......+..+...|..=..+-+.++.+|+.+-.+.++
T Consensus 81 l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS 125 (339)
T cd09238 81 LPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPS 125 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 888888888888899999999999999999999999997665443
No 245
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.59 E-value=3.3e+02 Score=23.86 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=26.9
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
.++..++..+..|=.+|...++.+-.++...+.++.+.+++|+.
T Consensus 248 ~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 248 QDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666666666666654
No 246
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.57 E-value=1.8e+02 Score=21.10 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=27.8
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+++-+.+..++.++..+-..+..|+.++..+-++=..++-
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777766555554
No 247
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.42 E-value=1.4e+02 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 86 KEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+..|...++.|.+.+..+.+++..+++.|..
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555543
No 248
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=33.42 E-value=2.2e+02 Score=25.54 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 25 MRSELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
...+++.|..++..+.-++.+.+.-+..++..+
T Consensus 275 ~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~ 307 (391)
T smart00435 275 HEKSMEKLQEKIKALKYQLKRLKKMILLFEMIS 307 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 346677788888888888888888777666543
No 249
>PRK10698 phage shock protein PspA; Provisional
Probab=33.26 E-value=2.6e+02 Score=22.57 Aligned_cols=100 Identities=10% Similarity=0.212 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCCCCceeeeecceee-eecHhHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAI--------KPLDPSRKCYRMIGGVLV-ERTISEVLPAVQR 84 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL--------~~l~~dr~~yrlVG~VLV-e~tv~Ea~~~Le~ 84 (148)
-++++-..+..++..+..++.....++.++.++..-.+.. ..=+.| |-=..|. +....+-+..|+.
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed-----LAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED-----LARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777778888888888776665543 332222 1111111 2236777788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 85 NKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.++.....+..|..++..++.++.+++.+.+.-+
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999998888777643
No 250
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.11 E-value=1.5e+02 Score=24.53 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=31.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+....|+.+++.++..++.++.++-.+..+++.|++...
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888776543
No 251
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.00 E-value=3.9e+02 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+.+.+.|...++=+..++...++++++..
T Consensus 132 ~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 132 EQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666544
No 252
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=32.88 E-value=2.8e+02 Score=22.79 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=24.9
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+..+.++...+......+...|..++..+..+..++......|+
T Consensus 243 e~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 243 ERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666666666655554443
No 253
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.81 E-value=2.4e+02 Score=22.09 Aligned_cols=101 Identities=12% Similarity=0.151 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCCceeeeecceee-eecHhHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL--------DPSRKCYRMIGGVLV-ERTISEVLPAVQ 83 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l--------~~dr~~yrlVG~VLV-e~tv~Ea~~~Le 83 (148)
+.++++-..|.+++..+..+......++.++.++..-++.+..- ++| +.-..|. +.+..+-+..++
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ed-----LAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRED-----LAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888888888888887766654432 211 1111122 234566677777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 84 RNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
..++.+...+..|..++..+..++.+++.+...-+
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888877766533
No 254
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.63 E-value=1.4e+02 Score=19.20 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
...+.+..+++.|...-..+...+......|+
T Consensus 73 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 73 EDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33466666666666666666666555555443
No 255
>PHA01750 hypothetical protein
Probab=32.60 E-value=71 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+.+|...++.+...++.++.|..++.+++.
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345555666666666666666666666554
No 256
>PRK14148 heat shock protein GrpE; Provisional
Probab=32.43 E-value=1.8e+02 Score=23.43 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=28.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..-...++..++.++..++.++..+-....+++.|++...
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777766443
No 257
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.06 E-value=4.1e+02 Score=24.49 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 87 EGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
..+++..++.++....+..+++.+++.+
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 258
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.06 E-value=1.9e+02 Score=20.84 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+++.-+.|...+..+.++=+.+..++++|+.+|+
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666667777778888888888888888888775
No 259
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=31.96 E-value=2.6e+02 Score=22.15 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
.+++.++..+.+++...|..++.....-+.+....+..|..-
T Consensus 34 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 75 (177)
T PF03234_consen 34 HQARHERREERKQEIEELKYERKINEKLLKRIQKLLSALDKE 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355667777777777777777777666666666666665544
No 260
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.94 E-value=5.2e+02 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=38.3
Q ss_pred eeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 62 CYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 62 ~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
++.-++.+.+..+..++-..+...+..++..+..+..+...+.+.+..+..-+
T Consensus 877 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l 929 (1201)
T PF12128_consen 877 LLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVL 929 (1201)
T ss_pred HHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334666677777777777888888888878777777777777777777444
No 261
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=31.91 E-value=31 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=29.9
Q ss_pred eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+..|++.+..|...++.|...+..|..++..++.++..++.
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34688888888889999999999999988888888888754
No 262
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=31.84 E-value=1.7e+02 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...|++|.+.|...+...++........+.+++.++.
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~ 86 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLR 86 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887777777666666666665443
No 263
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.74 E-value=1.6e+02 Score=20.29 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=17.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEA 43 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql 43 (148)
.++...++-.+++.++.++..+..++.-++.++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554443
No 264
>PRK14151 heat shock protein GrpE; Provisional
Probab=31.63 E-value=1.3e+02 Score=23.61 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=28.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.++...|+.+++.++..++.++.++-....+++.|++..
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~ 57 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRA 57 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888888887777777777776543
No 265
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=31.54 E-value=1.4e+02 Score=21.58 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...+.|...-++|.+++...+++|+++.+.+
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666666666666666888888887664
No 266
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.41 E-value=1.1e+02 Score=19.97 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 87 EGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 87 e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
-.|+.++..|++.++..+++....+...
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777777777666544
No 267
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=31.36 E-value=1.9e+02 Score=23.53 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=35.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
+..|...+..++.+|-.|..-|..+++-..+++.|++|.+-
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~ 86 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVL 86 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH
Confidence 34677788888899999999999999999999999999754
No 268
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=31.35 E-value=1.7e+02 Score=23.89 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 25 MRSELNQIYSKITELEMEASEHSLVIN 51 (148)
Q Consensus 25 Lq~q~q~l~~q~~~Le~ql~E~~~Vle 51 (148)
+-...+.+-..+..+++++.|.+...+
T Consensus 51 ~enr~~kdEE~~e~~e~qLkEAk~iaE 77 (205)
T KOG1003|consen 51 IENRAQKLEEKMEAQEAQLKEAKHIAE 77 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555666667777777655444
No 269
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=31.35 E-value=65 Score=24.72 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 45 EHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 45 E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+-+.+.++|+.+.++ -.=|..|-+-+=++.+--...+.+.+.-|..+.++++++...+...+...-...++
T Consensus 23 d~e~~~dtLe~i~~~-~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g~ 93 (162)
T PF05565_consen 23 DEEAIADTLESIEDE-IEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAGI 93 (162)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566666665432 11123333333334444444555555555555555555555565555555555444
No 270
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.06 E-value=4.8e+02 Score=25.02 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
.....+++..+++.++.+++.+...+.++...++--+.=++ ..-++..+.|- |= +.+.+.|.
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~~s~~-----L~-----------~~Q~~~I~ 691 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKKKSIV-----LS-----------ESQKRTIK 691 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccCCCcc-----CC-----------HHHHHHHH
Confidence 33445667777888888888777777777666654433222 33333333221 11 34556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 91 EVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+....+++..+-+++..+.+.++
T Consensus 692 ~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 692 EILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666666666666666666665554
No 271
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.91 E-value=3.1e+02 Score=22.69 Aligned_cols=96 Identities=13% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh----hcCCCC--CCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKIT-ELEMEASEHSLVINA----IKPLDP--SRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~-~Le~ql~E~~~Vlee----L~~l~~--dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
-+.++|+++.++..-++.-. .=-..|.|+...+++ ++.++- -.+-|--.|=..-. ..+-.-+.-.+-..+|.
T Consensus 50 EIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~-k~dp~e~ek~e~~~wl~ 128 (233)
T PF04065_consen 50 EIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAAS-KLDPKEKEKEEARDWLK 128 (233)
T ss_pred HHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhccc-ccCcchHHHHHHHHHHH
Confidence 35556666655553332000 001235555555543 444432 25566555532221 11223334445556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 91 EVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
..|+.|+.|++.++.+++.+....
T Consensus 129 ~~Id~L~~QiE~~E~E~E~L~~~~ 152 (233)
T PF04065_consen 129 DSIDELNRQIEQLEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777766543
No 272
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=30.53 E-value=1.9e+02 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+...|++|.+.|...+...++........+.+++.+
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~ 79 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQK 79 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777776666665555555555544443
No 273
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.34 E-value=1.7e+02 Score=23.04 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+..+..+++.++..++.++..+-....+++.|++..
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666665543
No 274
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=30.33 E-value=1.6e+02 Score=20.23 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=17.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIY 33 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~ 33 (148)
.|..+.++..|+.+|.+++...
T Consensus 32 d~e~~~l~~~f~~~q~~~~~~q 53 (108)
T PF06133_consen 32 DPEAQKLIEEFQKLQQELQNAQ 53 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4777889999999999887644
No 275
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=30.32 E-value=1.2e+02 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCcee-eeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032018 59 SRKCY-RMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKK 105 (148)
Q Consensus 59 dr~~y-rlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~k 105 (148)
.-+|| -.-|+|-....+=.-..+=...+-.|+..|+.|+.+++.+.+
T Consensus 80 t~rC~Il~n~tVnCs~~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LKe 127 (145)
T PF12548_consen 80 THRCFILPNDTVNCSNVIYQDPKAWKDHRLHIDHEIETLQDKIKNLKE 127 (145)
T ss_pred eeeEEEecCCcEeccHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35898 777999999999999999999999999999999988887653
No 276
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=30.30 E-value=1e+02 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
|++..|......|+..+.+|+..+.....++.++..+.
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~ 38 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKG 38 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556666666666666666666666666665555443
No 277
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=2.6e+02 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeee
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVE 72 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe 72 (148)
-..|..|..++..+..++.++-+...=+..++..|+.-. +.|+..+++.--+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~--~~lt~~~~~l~~e 546 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE--RGLTSNESKLIKE 546 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhhhhHHH
Confidence 345666777777777777777777666666666665543 6666666655443
No 278
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.89 E-value=3e+02 Score=22.27 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
..+++.++.+ ..++..+..|..++..|+.++..++..+...++
T Consensus 11 ~p~~t~~d~~---~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~ 53 (211)
T PTZ00464 11 TPKPTLEDAS---KRIGGRSEVVDARINKIDAELMKLKEQIQRTRG 53 (211)
T ss_pred CCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566766555 888899999999999999999988766665444
No 279
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=29.74 E-value=33 Score=30.89 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHhhcCCCCCCcee--eeecceeeeecHhHHH
Q 032018 21 MYTSMRSELNQIYSKITEL-EMEASE--------HSLVINAIKPLDPSRKCY--RMIGGVLVERTISEVL 79 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~L-e~ql~E--------~~~VleeL~~l~~dr~~y--rlVG~VLVe~tv~Ea~ 79 (148)
+|..-..+++.|+..-..+ ...|.. ..-|+++|...| |..++ ||.+.|.+-++++.++
T Consensus 262 e~~~~~~~L~~Lv~~~~~~t~enL~k~sa~~l~ITrgVIeALr~~P-dq~~l~~RLA~EiA~a~~~ekAL 330 (418)
T TIGR03755 262 EYDSNLEALQKLVSGATPPTQENLAKASSPSLPITRGVIEALREDP-DQSLLVQRLASEIALADTLEKAL 330 (418)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHhcCCCccccHHHHHHHHhCh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555543332 223333 467999999977 77777 8999888888887665
No 280
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.61 E-value=1.8e+02 Score=19.53 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
...|...++.++.+..++..|...+.+...-+.... . .-++.-=.....-+..|...+..+...+..+..
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~---------~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 73 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ---------Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQ 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777666633322111 1 111222223444555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 032018 99 ALAAKKKEISD 109 (148)
Q Consensus 99 ql~~~~kel~~ 109 (148)
.+......+..
T Consensus 74 ~~~~~r~~l~~ 84 (123)
T PF02050_consen 74 EVEQAREELQE 84 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 281
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=29.56 E-value=1.9e+02 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++..++...+.+..+.+++.++
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L 109 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRH 109 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777666666665555555544
No 282
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.42 E-value=2.1e+02 Score=20.29 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKE 106 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ke 106 (148)
.....+...+.|....++....-++ ...+..+....|+.++..|+..+..|......+...
T Consensus 50 ~~lr~~G~sl~eI~~~l~~~~~~~~------------~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 50 RRLLAAGLTLEEIREFLPCLRGGEP------------TFRPCPDLLAVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred HHHHHcCCCHHHHHHHHHHhhCCCc------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888877765444221 233445667777888888888887777766665543
No 283
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.31 E-value=3.5e+02 Score=22.82 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceee---eecHhHHHHHHHHhHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLV---ERTISEVLPAVQRNKEGI 89 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLV---e~tv~Ea~~~Le~r~e~L 89 (148)
.+++++-.....|+..=..++..|+..|.+-... |-+-|..- -+|+.+-.+|= ...+.++...|.+=.+..
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~--Vr~lLqqy----~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~ 79 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDTEDSTALK--VRKLLQQY----DIYRTAIDILEYSNHKQLQQAKAELQEWEEKE 79 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHH--HHHHHHHH----HHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777776654432 22222221 12222222221 345778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 90 EEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 90 ~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+..+..|..|+..+..++...++..+.
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877776553
No 284
>PRK14162 heat shock protein GrpE; Provisional
Probab=29.30 E-value=1.8e+02 Score=23.37 Aligned_cols=43 Identities=9% Similarity=0.259 Sum_probs=32.0
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+...-...|+..++.++..++.+...+..+..+++.|++.+.
T Consensus 35 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 35 QEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788888888888888888888888887776544
No 285
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=29.26 E-value=2.3e+02 Score=26.42 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=27.6
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 032018 67 GGVLVERTISEVLPAVQRNKEGIEE----VIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~----~i~~l~~ql~~~~kel~~~~~k 113 (148)
...+-+.+++.+...|++-.+-|.. ..+.++..+.++...++.+...
T Consensus 561 ~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r 611 (653)
T PTZ00009 561 KGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTK 611 (653)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677776776666666653 4455555555555555555443
No 286
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=29.24 E-value=2.1e+02 Score=21.06 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++.........+..+.+++.++
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l 65 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQL 65 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665555555555555554443
No 287
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.17 E-value=4.3e+02 Score=25.31 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI 93 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i 93 (148)
.+.++-.+++.||++...=..++..+..++..+=-|| .+++.-.+ .-+-+-|+..+-.........+++.|...+
T Consensus 161 kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L----g~~~~~~v-t~~~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL----GLDFSMTV-TDVEPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccch-hhhhhhhhhccCcccccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032018 94 ARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 94 ~~l~~ql~~~~kel~~~~~k~ 114 (148)
..|..+-.+--..+..+..+.
T Consensus 236 ~~l~~~k~qr~~kl~~l~~~~ 256 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKLQDLRTKL 256 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 288
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=29.06 E-value=2.1e+02 Score=21.08 Aligned_cols=64 Identities=25% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 32 l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
++.....+...+.|...++.... ++ .+.+++...|..+++.|+..++.|......+...+..+.
T Consensus 49 ~I~~lr~~GfsL~eI~~ll~~~~------------~~----~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 49 IISSAQQAGFSLDEIRQLLPADA------------SN----WQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHHcCCCHHHHHHHHhccc------------CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567778888888775321 11 234678888999999999999888888888777776665
No 289
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.90 E-value=4.8e+02 Score=24.29 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032018 88 GIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
.|...+-.|++++....++|+.+
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 290
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=28.79 E-value=2.9e+02 Score=25.50 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAA 102 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~ 102 (148)
..++..+.+....|.++..=.-|+.+..|-.+.+.+=++.+ .+.-|.+..|..+-+.|+.+|..|+..++.
T Consensus 389 ~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~---------~~myd~~~~l~~~q~~le~qI~~Le~kl~~ 459 (489)
T KOG3684|consen 389 ARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQ---------NDMYDLLQELHSRQEELEKQIDTLESKLEA 459 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777666665433322 245566777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 032018 103 KKKEISDFEA 112 (148)
Q Consensus 103 ~~kel~~~~~ 112 (148)
+...++.+-.
T Consensus 460 l~~~l~s~~~ 469 (489)
T KOG3684|consen 460 LTASLSSLPG 469 (489)
T ss_pred HHHHHHhCch
Confidence 7666665543
No 291
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=28.51 E-value=2.3e+02 Score=21.87 Aligned_cols=41 Identities=2% Similarity=-0.015 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 17 IVANMYTSMRSELNQIY---------SKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~---------~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
.+.+++..|...+.... .+...++..+++.+.-|...+-++
T Consensus 38 ~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~Ii~ 87 (160)
T PRK06342 38 ALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQLMP 87 (160)
T ss_pred HHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEEEC
Confidence 34455555544443332 344556677777777777665554
No 292
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.50 E-value=3.2e+02 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032018 20 NMYTSMRSELNQIYSKITELE 40 (148)
Q Consensus 20 ~~~q~Lq~q~q~l~~q~~~Le 40 (148)
.+|.++..+...+.....+++
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 293
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.46 E-value=1.9e+02 Score=19.51 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIK 54 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~ 54 (148)
+.-|.+|...++.++.-|..|.+++.+.+.=-..|.
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456788888888888888888888877766544444
No 294
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=28.14 E-value=74 Score=30.14 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=28.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~ 119 (148)
+..|.+.|...+++++++++.++.+|+.+++.|..++.
T Consensus 598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFt 635 (661)
T PRK06664 598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYL 635 (661)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577778888888888888888888777777766544
No 295
>PRK14163 heat shock protein GrpE; Provisional
Probab=28.12 E-value=1.8e+02 Score=23.84 Aligned_cols=45 Identities=4% Similarity=0.126 Sum_probs=35.2
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...-......|..+++.++..++.+...+-.+..+++.|++...
T Consensus 34 ~~~~~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 34 APAGDAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVE 78 (214)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556788888999999999999999999999888876543
No 296
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.12 E-value=1.1e+02 Score=26.33 Aligned_cols=30 Identities=7% Similarity=0.155 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 86 KEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.+++..+.++.++++.++.++..++..+-
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777776666554
No 297
>PRK14139 heat shock protein GrpE; Provisional
Probab=27.92 E-value=2e+02 Score=22.88 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=28.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.....|+.+++.++..++.++..+-....+++.|++...
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888888887776443
No 298
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.64 E-value=1.7e+02 Score=23.92 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCceeeeeccee-eeecHhHHHHHHHHhHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL-----DPSRKCYRMIGGVL-VERTISEVLPAVQRNKE 87 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l-----~~dr~~yrlVG~VL-Ve~tv~Ea~~~Le~r~e 87 (148)
-+++.-..+..+++....+......++.++++.....+.+..= ..+.. .|.--+| -++++.+....++..+.
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E--~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNE--DLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777777776655544321 11110 0011111 13456666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 88 GIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 88 ~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
.....+++|..++..+..+|.+++.+...-
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766653
No 299
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.63 E-value=1.2e+02 Score=26.66 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcC-CCCCCceeeeec------ceeeeecHhHHHHHHHHhHHHHHHHHHHHHH
Q 032018 43 ASEHSLVINAIKP-LDPSRKCYRMIG------GVLVERTISEVLPAVQRNKEGIEEVIARLNE 98 (148)
Q Consensus 43 l~E~~~VleeL~~-l~~dr~~yrlVG------~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ 98 (148)
.-|.++|+=-|+- +..|++=||+== .-=|++.++++.|.|.+=...|...++++..
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~S 266 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIAS 266 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4466777776663 355777776421 1125566666666666554444444443333
No 300
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.57 E-value=3.4e+02 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
.+..|.+.|.+++.+...+..++.+|...+.
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666665555443
No 301
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=27.55 E-value=2.3e+02 Score=21.68 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE 91 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~ 91 (148)
..|+...+.|......|+.-..+...-|.=++.+++=.+-+..-|.-+...+..+.+..|++-++||+.
T Consensus 45 ~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~ 113 (157)
T PF04136_consen 45 NSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEE 113 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666677777777777776555555556666677788899999999999985
No 302
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.41 E-value=2.2e+02 Score=21.91 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++..++...+..+.+.+++.++
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L 88 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQ 88 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766666655555555555443
No 303
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.33 E-value=1.8e+02 Score=23.65 Aligned_cols=34 Identities=6% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
..|+.+++.++..++.++..+-.+..+++.|++.
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666666655543
No 304
>PRK06798 fliD flagellar capping protein; Validated
Probab=27.26 E-value=93 Score=27.82 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+..|.+.|+..|++++++++.++.+++.+++.|.-
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~ 411 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVD 411 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666555554443
No 305
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.19 E-value=4.9e+02 Score=24.10 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 86 KEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 86 ~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..++++.....++|+....+..+++++|-+
T Consensus 349 ~q~~~kkrqnaekql~~Ake~~eklkKKrs 378 (575)
T KOG4403|consen 349 VQYYNKKRQNAEKQLKEAKEMAEKLKKKRS 378 (575)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 345555566666666666666666666654
No 306
>PRK14156 heat shock protein GrpE; Provisional
Probab=27.07 E-value=1.8e+02 Score=23.02 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=24.7
Q ss_pred ecHhHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 73 RTISEVLPA--VQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 73 ~tv~Ea~~~--Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
.|+.++... +...++.++..++.++..+-.+..+++.|++..
T Consensus 21 ~~~~~~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~ 64 (177)
T PRK14156 21 ETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRA 64 (177)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555443 344555666666666666666666666666543
No 307
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.01 E-value=2.4e+02 Score=21.04 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+...|++|.+.|...++..............+++.+
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~ 65 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERE 65 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776655555555555444443
No 308
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=26.93 E-value=1.8e+02 Score=21.09 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
..+..+...+..+......|-+.+.-++.+-.|....|+.|+.-
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~ 100 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQ 100 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888999999999999999998888777653
No 309
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.71 E-value=1.5e+02 Score=25.09 Aligned_cols=33 Identities=9% Similarity=0.176 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+..+++.|+..++.+..++..+++++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
No 310
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=26.64 E-value=2.8e+02 Score=21.21 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=26.5
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+.-|.+.+...++...+++-..|+.++...+.+..++..|++..
T Consensus 27 ~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rk 70 (162)
T PF05565_consen 27 IADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERK 70 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666655555433
No 311
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=26.53 E-value=1.3e+02 Score=21.41 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=26.5
Q ss_pred ecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 66 IGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 66 VG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+|++.+=.... ...-....+.++.++.++...+.....+|..+.....
T Consensus 12 ~G~~~~~~~~~--~~~~~~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 12 IGPAFVLRPPE--PEIPERHIDDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp EEEEEE-----------TTB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccc--CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544333 2222223367778888888888888888887777644
No 312
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.51 E-value=3.6e+02 Score=22.05 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+..+....+.|+..+..|...+..+..+.+.+...++
T Consensus 106 ~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 106 AELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555554444443
No 313
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=26.48 E-value=1.4e+02 Score=25.45 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=33.1
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...++-..+..|++....++..++..+...+.++++++.--+
T Consensus 32 ~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~k 74 (297)
T PF11945_consen 32 KVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKK 74 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567777888888888888888888888888888887775443
No 314
>PRK09039 hypothetical protein; Validated
Probab=26.22 E-value=4.2e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=19.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAK----KKEISDFEAKY 114 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~----~kel~~~~~k~ 114 (148)
+.++...+.+....+..|+.|...++.. -.++..|+.++
T Consensus 157 e~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 157 EAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4444444444444444444444444433 34555555555
No 315
>PRK14140 heat shock protein GrpE; Provisional
Probab=26.18 E-value=2.5e+02 Score=22.45 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=29.2
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
-.+.+..+..+++.++..++.++.++.....+++.|++..
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~ 74 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRI 74 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777888888888888888887777766543
No 316
>PHA02557 22 prohead core protein; Provisional
Probab=26.17 E-value=2.3e+02 Score=24.17 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=40.9
Q ss_pred cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.+|-|+-..-+++..|+.++...+.+++.+-.....+++.++.+.+.
T Consensus 131 hnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~ 177 (271)
T PHA02557 131 HNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKRE 177 (271)
T ss_pred hCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999988888888876653
No 317
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=26.10 E-value=2.6e+02 Score=20.37 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++............+.+++..+
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l 56 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVIL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766666666555555555554443
No 318
>PHA00489 scaffolding protein
Probab=26.02 E-value=60 Score=23.42 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCceeeeecce
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD-----PSRKCYRMIGGV 69 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----~dr~~yrlVG~V 69 (148)
-..-+|+||..+-...+...+|. .+++-|..-. ...+.||.+|+.
T Consensus 25 rTeaLqqlr~~ygSf~sEy~elT-------~a~eKl~aek~DLivsNskLFrqlg~t 74 (101)
T PHA00489 25 RTEALQQLRESYGSFHSEYEELT-------EALEKLTAEKEDLIVSNSKLFRQLGPT 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhhhHHHHHHcCCc
Confidence 34455666655555544444333 3333333322 248999999985
No 319
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.88 E-value=2.7e+02 Score=20.40 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVI 50 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vl 50 (148)
+..++.++.+++.+...+..|..+..-....+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444443
No 320
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.77 E-value=4.5e+02 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISD 109 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~ 109 (148)
..++..++..++++++.+.+.+.-+..
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555565555555554444333
No 321
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=25.69 E-value=2.6e+02 Score=20.20 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++..++........+.++...+
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L 66 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQL 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777666666555555555554444433
No 322
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.68 E-value=2.6e+02 Score=20.22 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.|=+++..++..+..+..++..+++.+.++-+++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777766554
No 323
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=25.65 E-value=3.5e+02 Score=21.61 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---Ccee-------eeecceeeeecHhHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS---RKCY-------RMIGGVLVERTISEVLPAVQR 84 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d---r~~y-------rlVG~VLVe~tv~Ea~~~Le~ 84 (148)
+..+=.++..+......++.++.+|-.-..+....+..|...+.. +.+| .-++.+.-++...|..+-.+.
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~ 100 (224)
T cd07623 21 IENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAEL 100 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888889999999999999999999888753 2333 333444555555555544444
Q ss_pred hHHHHH
Q 032018 85 NKEGIE 90 (148)
Q Consensus 85 r~e~L~ 90 (148)
=.+++.
T Consensus 101 L~eY~r 106 (224)
T cd07623 101 LKDYIG 106 (224)
T ss_pred HHHHHH
Confidence 444433
No 324
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.60 E-value=2.6e+02 Score=21.34 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...+++|.+.|...++..++........+.++..++
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 79 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777766666665555555555444433
No 325
>PRK12765 flagellar capping protein; Provisional
Probab=25.60 E-value=91 Score=29.07 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
.|..+.+.|...+++|.+++...+.+|+.+...|.-++
T Consensus 529 ~l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf 566 (595)
T PRK12765 529 SLTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKW 566 (595)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888888888888777766554
No 326
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.58 E-value=4.9e+02 Score=28.04 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecce------------ee--eecHhHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV------------LV--ERTISEVLPA 81 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~V------------LV--e~tv~Ea~~~ 81 (148)
.++-.++-.+.+++..+..+...+..+++....-++.+..= +++--+.++-+- +. +++.-+.+..
T Consensus 55 ~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~-~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~ 133 (1822)
T KOG4674|consen 55 SELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE-RSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLER 133 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777776666655544331 122223333333 33 3444455555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+..+++.+...++.|+.++......+-++..
T Consensus 134 ~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~ 164 (1822)
T KOG4674|consen 134 QKAELEALESENKDLNDQLKSSTKTLSELEA 164 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666555555544443
No 327
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.52 E-value=3.3e+02 Score=21.23 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..+|..+...+...+..-...+..++++|..++..++
T Consensus 144 ~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 144 SRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666555443
No 328
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.52 E-value=3.3e+02 Score=21.22 Aligned_cols=42 Identities=14% Similarity=0.272 Sum_probs=26.8
Q ss_pred cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.++.+....+.++.+..++..|+-++..+++++..++..++
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666554
No 329
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.47 E-value=3.6e+02 Score=21.77 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVI 50 (148)
Q Consensus 15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vl 50 (148)
++.+-.+.+.|+.+.+.+..-..-+++++.+....|
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556667777777777777777777777766554
No 330
>PRK08724 fliD flagellar capping protein; Validated
Probab=25.31 E-value=1.1e+02 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i 118 (148)
..|.+.|...++++.+++..++.+|+.+...|.-++
T Consensus 616 ~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QF 651 (673)
T PRK08724 616 RTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKF 651 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777778888888888888887777666554
No 331
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.30 E-value=1.5e+02 Score=20.74 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 032018 21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL 56 (148)
Q Consensus 21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l 56 (148)
++..+..+++....+|.+++..+.+.+.-..+++++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776666666666554
No 332
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.29 E-value=2.5e+02 Score=19.86 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY 63 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y 63 (148)
.+...++..|+.++..|.+.+..++..+.++..=-+=|..+-|...-|
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~ef 124 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPEF 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 356778889999999999999999999998888777777776544333
No 333
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.16 E-value=1.6e+02 Score=27.62 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032018 96 LNEALAAKKKEISDF 110 (148)
Q Consensus 96 l~~ql~~~~kel~~~ 110 (148)
+.+.+.+++.+++.|
T Consensus 344 l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 344 LKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 334
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.13 E-value=68 Score=29.47 Aligned_cols=26 Identities=8% Similarity=0.206 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 85 NKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
+++.|+++|+.|++|+.++.+++++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 66666666666666666655555443
No 335
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=25.12 E-value=2.6e+02 Score=21.29 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=23.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...++..++........+.+++.++
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777666665555555555554443
No 336
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.06 E-value=2.2e+02 Score=20.23 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 33 YSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 33 ~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
+.....+...+.|...+++....- ..+..+....|+.+++.|+..++.|......+..-+.
T Consensus 50 I~~lr~~G~sl~eI~~~l~~~~~~---------------~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 50 IRRAQALGFSLAEIRELLSLRDDG---------------AAPCAEVRALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHCCCCHHHHHHHHHhhhcC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777643321 1234666777788888888777777666655554443
No 337
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.91 E-value=2.7e+02 Score=21.34 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+...|++|.+.|...++..++..........+++.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQ 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655554444444444443
No 338
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.91 E-value=2.7e+02 Score=20.81 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+...|++|.+.|...+.............+.+++.++
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L 63 (159)
T PRK09173 27 IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKR 63 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888777776666666655555555444
No 339
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.68 E-value=71 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.+...++.++..++.+...+..+..+++.++..
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r 47 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKR 47 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555544443
No 340
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=24.67 E-value=2e+02 Score=23.07 Aligned_cols=41 Identities=10% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 032018 17 IVANMYTSMRS----ELNQIYSKITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 17 e~~~~~q~Lq~----q~q~l~~q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
+--..|+.||+ ++..|.++...|+.+|.....=||-|.+++
T Consensus 116 eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIE 160 (179)
T PF13942_consen 116 EERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIE 160 (179)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44567888886 567899999999999999999999998874
No 341
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.64 E-value=2.7e+02 Score=21.11 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
=+...|++|.+.|...++..++...+......+++..+
T Consensus 34 pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L 71 (167)
T PRK14475 34 ALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAER 71 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666666555555555555544
No 342
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.64 E-value=2.9e+02 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
+..+|+.|..+++.+..++..++..+.....
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444555555555555555555555444444
No 343
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.53 E-value=1.8e+02 Score=22.54 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=16.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKE 106 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~ke 106 (148)
.+-+..|+++++..+..++.|++|.+.+.++
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555566665555554
No 344
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=24.45 E-value=2.8e+02 Score=20.09 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCCCceeeeecce
Q 032018 17 IVANMYTSMRSELNQIYSKITELEME---ASEHSLVINAIKPLDPSRKCYRMIGGV 69 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~q---l~E~~~VleeL~~l~~dr~~yrlVG~V 69 (148)
....++..|...-..+..++..|... +. +.+-..|--..|+-.+|+++.+-
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~--e~AR~~l~~~~~gEi~f~i~~~~ 114 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIE--ERARSELGMSKPGEIFFRLVKPS 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHhCCCCCCCEEEEecccc
Confidence 34455555555555555666555555 22 23334566678888899888753
No 345
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=24.27 E-value=2.9e+02 Score=20.32 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCce
Q 032018 23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKC 62 (148)
Q Consensus 23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~ 62 (148)
..|+.++..|..++.+|..-.......++.+..-+++..|
T Consensus 81 ~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 120 (131)
T cd04786 81 AALERKVADIEALEARLAQNKAQLLVLIDLIESKPDEMDC 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3466666677777777777777777777777766666666
No 346
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.13 E-value=2.3e+02 Score=19.07 Aligned_cols=35 Identities=9% Similarity=0.249 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
..+..+++.++.++..++.+..+...+-.+.+.+.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~ 60 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELL 60 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 347
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.01 E-value=2e+02 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.+..+++.++..++.++..+..+..+++.|++...
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777777776665443
No 348
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.00 E-value=2.5e+02 Score=20.31 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
.....+...+.|.+.+++.... ++ .+..++...+..+++.|+..+..|+.....+...+.
T Consensus 51 ~~lr~~G~sL~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 51 RRARDLGFSLEEIRALLALSDR--PD-------------RSCAEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred HHHHHCCCCHHHHHHHHhhhhc--CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666777777777664321 11 345677778888888888888887776666555443
No 349
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=23.88 E-value=2.9e+02 Score=20.11 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 31 QIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 31 ~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~ 110 (148)
.++.....+...+.|...+++.... ++ .+..++...|..+++.|+..+..+......+...+..|
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (133)
T cd04787 48 RFILSARQLGFSLKDIKEILSHADQ--GE-------------SPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQW 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhcc--CC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788888888888764322 11 22346677788888888888888888888777777666
Q ss_pred HH
Q 032018 111 EA 112 (148)
Q Consensus 111 ~~ 112 (148)
..
T Consensus 113 ~~ 114 (133)
T cd04787 113 QQ 114 (133)
T ss_pred Hh
Confidence 53
No 350
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=23.81 E-value=81 Score=23.09 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 032018 84 RNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 84 ~r~e~L~~~i~~l~~ql~~~ 103 (148)
+.++.|..+|+.|..++..+
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 351
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.65 E-value=2.8e+02 Score=23.16 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA 52 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee 52 (148)
+.+-..++.|....+.--..|++|+..|.+++.+|.+
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666777777788777777653
No 352
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=23.60 E-value=8.7e+02 Score=26.47 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~ 95 (148)
..+...+..-+.+.+..-..+..+...+.|+.-.+++|..... -|. -.-.+....+..+.+++..+++..+.
T Consensus 1452 e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk---~l~-----~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1452 EKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENK---NLS-----QEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666655431 000 00012233334444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032018 96 LNEALAAKKKEISDFEAK 113 (148)
Q Consensus 96 l~~ql~~~~kel~~~~~k 113 (148)
+..+..+++..+.++...
T Consensus 1524 le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 353
>PRK07737 fliD flagellar capping protein; Validated
Probab=23.51 E-value=1e+02 Score=28.00 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 85 NKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 85 r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
|.+.|...++++++++..++.+|+.+++.|.-+
T Consensus 442 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~q 474 (501)
T PRK07737 442 QQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKK 474 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777776666665443
No 354
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=23.43 E-value=1.5e+02 Score=20.78 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAA---KKKEISDFEAKYKI 116 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~---~~kel~~~~~k~~i 116 (148)
..+++--+++..++++|++-+.. ...+..+++.+.||
T Consensus 50 Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NI 89 (93)
T cd00238 50 KILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRLNI 89 (93)
T ss_pred HHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34568889999999999999987 67888888888887
No 355
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=23.30 E-value=3e+02 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q 032018 35 KITELEMEASEHSLVINAIKPLD 57 (148)
Q Consensus 35 q~~~Le~ql~E~~~VleeL~~l~ 57 (148)
....++..+.+...-|..+..++
T Consensus 55 ~~~~~~~ri~~l~~~L~~a~ii~ 77 (157)
T PRK00226 55 EQGFIEGRIRELEDKLSNAEVID 77 (157)
T ss_pred HHHHHHHHHHHHHHHHHhCeecC
Confidence 44556777777777777766664
No 356
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.29 E-value=2.6e+02 Score=19.61 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
+++...+..+++.|+..+..+......+...+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888877777776666544
No 357
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.28 E-value=2e+02 Score=17.89 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032018 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK 103 (148)
Q Consensus 32 l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~ 103 (148)
.+.....+...+.|.+..+ .+..- + ..+..++...+..+++.|+..|+.|..-...+
T Consensus 6 ~I~~~r~lGfsL~eI~~~l-~l~~~-~-------------~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 6 FIRRLRELGFSLEEIRELL-ELYDQ-G-------------DPPCADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHTT--HHHHHHHH-HHCCS-H-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-hccCC-C-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888887 33221 1 23556777777888888887777776655444
No 358
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=23.24 E-value=5.2e+02 Score=22.74 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL------DPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l------~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
.+-...||.+.+.|...+-.|+-+|.-.+....-...+ |+..++. =|+..|++| -+|+.+
T Consensus 58 aNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvM-------------PVKqWLEER-R~lQgE 123 (351)
T PF07058_consen 58 ANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVM-------------PVKQWLEER-RFLQGE 123 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccc-------------cHHHHHHHH-HHHHHH
Confidence 45677888888999999999998888766543322222 1112221 245566665 478888
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhccccc
Q 032018 93 IARLNEALAAKK---KEISDFEAKYKIRIR 119 (148)
Q Consensus 93 i~~l~~ql~~~~---kel~~~~~k~~i~i~ 119 (148)
+.+|...|.--+ +--..+.+||+.|+.
T Consensus 124 mQ~LrDKLAiaERtAkaEaQLkeK~klRLK 153 (351)
T PF07058_consen 124 MQQLRDKLAIAERTAKAEAQLKEKLKLRLK 153 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888765433 223467778887765
No 359
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.16 E-value=3.2e+02 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
-....|..++..|+.+|+.++.++..++..+.
T Consensus 193 ~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~ 224 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIEDLEERLESKEERLR 224 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655555544443
No 360
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.11 E-value=2.8e+02 Score=19.95 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+.+.++++.|...+..+..++..++.-+..+..+.
T Consensus 76 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 76 KQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888877777777777666554
No 361
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=23.01 E-value=2.6e+02 Score=20.18 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
.....+...+.|...+++....-+ .+..++...|..+++.|+..+..|+.....+...+.
T Consensus 51 ~~lr~~G~sL~eI~~~l~~~~~~~---------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 51 RRARDLGFSLEEIRELLALWRDPS---------------RASADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777888887776433211 234566777888888888888887776666655444
No 362
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.96 E-value=2.2e+02 Score=18.46 Aligned_cols=36 Identities=14% Similarity=0.374 Sum_probs=22.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
+|.++..+..++..++.+.+.++.+.+-+.++-.=|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666555444
No 363
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.91 E-value=2.5e+02 Score=21.97 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+...++.++..++.++..+-.+..+++.|++...
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777777777777776665443
No 364
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.90 E-value=2.8e+02 Score=21.01 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVI 50 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vl 50 (148)
++..+..+-.+..+|+.++..+......|+.+++.....+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445566666777777777777777777777766655443
No 365
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.50 E-value=2.7e+02 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIAR 95 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~ 95 (148)
.+.=|.++++..++.+..
T Consensus 141 ll~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQD 158 (475)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 334444444444444443
No 366
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.48 E-value=2.1e+02 Score=23.28 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+.++.+++.++..++.++..+-....+++.|++...
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777776665443
No 367
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.41 E-value=5.1e+02 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQI 32 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l 32 (148)
..+.+..++..++.++..+
T Consensus 255 ~i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 368
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.30 E-value=2.4e+02 Score=18.55 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+--+++.++..-+.....|...+..+.+++++++.
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455677777777777777888888888777653
No 369
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=22.28 E-value=5.2e+02 Score=22.39 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032018 26 RSELNQIYSKITELEMEAS 44 (148)
Q Consensus 26 q~q~q~l~~q~~~Le~ql~ 44 (148)
+.++..|.+++..+.....
T Consensus 59 ~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 59 QQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444333
No 370
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.28 E-value=3.1e+02 Score=19.86 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=35.2
Q ss_pred cceeeeecHhHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 67 GGVLVERTISEVLPA-------VQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 67 G~VLVe~tv~Ea~~~-------Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
|.++-+..+.+++-. -+.=++.|..+|+=..+++..++++++.-..++
T Consensus 44 g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 44 GSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred cccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555556666533 344578889999999999999999998876654
No 371
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.26 E-value=4.4e+02 Score=21.57 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032018 18 VANMYTSMRSELNQIYSKITELEMEAS-EHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARL 96 (148)
Q Consensus 18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~-E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l 96 (148)
-+.++|+.=.++|..-.++.++|..|+ ..+.=|+.|..-.....+-....+. .....|...+..-
T Consensus 4 kv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~--------------~~~~~L~~~LrEk 69 (205)
T PF12240_consen 4 KVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPS--------------NNASNLKELLREK 69 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--------------CcHHHHHHHHHHH
Confidence 356666666777777788888887764 4455555554433222222222222 2333344444444
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032018 97 NEALAAKKKEISDFEAKY 114 (148)
Q Consensus 97 ~~ql~~~~kel~~~~~k~ 114 (148)
+.++=.++.++.+|..+|
T Consensus 70 EErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 70 EERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556667777777776
No 372
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.18 E-value=3.2e+02 Score=19.99 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.2
Q ss_pred ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+++-+.+..|+.++..+-..+..|+.++..+-++=..++-.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777778888888888888887777777766655544
No 373
>PRK00736 hypothetical protein; Provisional
Probab=22.16 E-value=2.5e+02 Score=18.60 Aligned_cols=37 Identities=8% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...+.-++.|+..+-+-.+++..+..++..+..++.
T Consensus 14 lafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 14 VAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666665554
No 374
>COG4024 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.11 E-value=1.5e+02 Score=24.22 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHhhcCCCCCCceeeeecceeeeecHhHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEME---ASE----------HSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLP 80 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~q---l~E----------~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~ 80 (148)
..+++-..+=.++.-+..|..--.-.+-+ +.| +..+-+.|.+-.+|+.+.-..|+ |+.-+.-++=|
T Consensus 65 ~A~EfcrklIa~~e~l~~ILa~fGveee~~~~~~e~~~g~l~IV~n~~~~K~L~k~~v~a~~v~t~G~-L~~eDmR~Inp 143 (218)
T COG4024 65 RAQEFCRKLIALDEILRSILALFGVEEETERDLDELFKGSLLIVVNGRERKALRKELVDAPIVQTGGP-LVPEDMRKINP 143 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchhccccHHHHhcCCEEEEEChHHHHHHHHhCCCCceeeeCCC-CCHHHHHHhCC
Confidence 44555555556666666666555444433 222 45666777766778888877776 88777777766
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCCC
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI-RIRKPES 123 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i-~i~~~~~ 123 (148)
+|= ++.++-|.+..+....+++.|..+++- +|+..++
T Consensus 144 ~~P------EkaleGl~KkvE~aR~~~Er~i~k~~~~~iv~~pe 181 (218)
T COG4024 144 NLP------EKALEGLVKKVERARRELERYIRKSGAKRIVLVPE 181 (218)
T ss_pred CCc------HHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcc
Confidence 653 345566666666777788888888884 4555433
No 375
>PRK13676 hypothetical protein; Provisional
Probab=22.09 E-value=2.7e+02 Score=19.69 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=17.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHH
Q 032018 12 PVNEQIVANMYTSMRSELNQIY 33 (148)
Q Consensus 12 ~~~~qe~~~~~q~Lq~q~q~l~ 33 (148)
-|..+.++..|+..|.+++...
T Consensus 35 d~~a~~li~~F~~~q~~~~~~q 56 (114)
T PRK13676 35 DEEAKKLFDEFRALQLEIQQKQ 56 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999886543
No 376
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.09 E-value=3.8e+02 Score=20.83 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=25.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
..++.+++..++.|-...+.....+..+.++|.+++....
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~ 44 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVS 44 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666655443
No 377
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.95 E-value=1.1e+02 Score=19.43 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032018 89 IEEVIARLNEALAAKKKEISDF 110 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~ 110 (148)
...++++++++++..+++++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666777777777766654
No 378
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.85 E-value=3e+02 Score=19.85 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 32 l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
++.....+...+.|.+.+++.... .+..++...++.+++.|+..+..|......+...+.
T Consensus 48 ~I~~l~~~G~sl~eI~~~l~~~~~-----------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 48 FIKRAQELGFSLEEIGGLLGLVDG-----------------THCREMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred HHHHHHHCCCCHHHHHHHHhcccC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456777788888877753221 234677778888888888888877666655554443
No 379
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.80 E-value=2.6e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
..|+..++.+...++.++.++-.+..+++.|++
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555554444
No 380
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.80 E-value=2.2e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 17 IVANMYTSMRSELNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~ 48 (148)
++..+++.||+++..|..++.++.-++.....
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 381
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.71 E-value=6.5e+02 Score=23.34 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
+.+..+++++..+...+..+..++..+.+++..+..
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 382
>PF15456 Uds1: Up-regulated During Septation
Probab=21.70 E-value=3.4e+02 Score=20.13 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV 92 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~ 92 (148)
..++++-.++..|...+..+..++. |+.-+.+.-.-+--+-.-++.+ -+..++ .-...++.+...+.+++.+...
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~--~~~~~~--~~~~~eeel~~~~rk~ee~~~e 96 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRR--ARFSRE--SSLKAEEELAESDRKCEELAQE 96 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccc--cCCCcc--hHHHHHHHHHHHHhhHHHHHHH
Confidence 4456677777778888888777777 8888877666666555544322 111111 2234567788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032018 93 IARLNEALAAKKKEISDFE 111 (148)
Q Consensus 93 i~~l~~ql~~~~kel~~~~ 111 (148)
+..++..+..+...+-+..
T Consensus 97 L~~le~R~~~~~~rLLeH~ 115 (124)
T PF15456_consen 97 LWKLENRLAEVRQRLLEHT 115 (124)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776543
No 383
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.58 E-value=88 Score=28.75 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018 82 VQRNKEGIEEVIARLNEALAAKKKEISDFEAKY 114 (148)
Q Consensus 82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~ 114 (148)
....++.++ .|+.|+++++++++++..+.++.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhccccccc
Confidence 345555555 77777777777777777555543
No 384
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.56 E-value=5e+02 Score=21.96 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
.+.+|++.|+....+|+..+..+-.+...++
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 3344444444444444444444333333333
No 385
>PRK00295 hypothetical protein; Provisional
Probab=21.55 E-value=2.5e+02 Score=18.53 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=21.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...+..++.|+..+-+-.+++..+..++..+..++.
T Consensus 14 la~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 14 QAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666665555555443
No 386
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.55 E-value=3.3e+02 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVI 50 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vl 50 (148)
.+..++..+|++||..-....++..++..-.+.+...+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI 41 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSI 41 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887777666655544
No 387
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=21.51 E-value=2.8e+02 Score=20.54 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 32 IYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 32 l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
++.....+...+.|...+++.... ++ .+..++...|.+++..|+..|..|......+...+.
T Consensus 49 ~I~~lr~~G~sl~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 49 LLRQARQVGFNLEESGELVNLFND--PQ-------------RHSADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhcc--CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667778888777765432 22 234556667777777777777777776666665444
No 388
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=21.51 E-value=8.5e+02 Score=24.83 Aligned_cols=98 Identities=9% Similarity=0.155 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITE-----LEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEG 88 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~-----Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~ 88 (148)
..+....++++++.+++.|...++. .|..+.+.....+.....++. +.--.-+-+...+.+.....+.+.
T Consensus 209 q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~-----i~~~~~~N~~Ls~~L~~~t~~~n~ 283 (1109)
T PRK10929 209 RSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKS-----IVAQFKINRELSQALNQQAQRMDL 283 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 89 IEEVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 89 L~~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
+...-.+.+.++....+.+..+++....
T Consensus 284 l~~~~~~~~~~l~~~~q~~~~i~eQi~~ 311 (1109)
T PRK10929 284 IASQQRQAASQTLQVRQALNTLREQSQW 311 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 389
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=21.50 E-value=2e+02 Score=18.51 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=18.3
Q ss_pred HhHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 032018 75 ISEVLPAVQRNKEGIE----EVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~----~~i~~l~~ql~~~~kel~~~~~k 113 (148)
|+..+..+..|...+. .+++.+...+.++++-+..+...
T Consensus 8 v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 8 VQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555566666665544 34555555555555555554433
No 390
>PRK11239 hypothetical protein; Provisional
Probab=21.44 E-value=1.6e+02 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 032018 41 MEASEHSLVINAIKPLDP 58 (148)
Q Consensus 41 ~ql~E~~~VleeL~~l~~ 58 (148)
.++.+.+.+|+.|-.-++
T Consensus 128 ~dv~~Ve~~L~~L~~r~~ 145 (215)
T PRK11239 128 SDMAEVESTLEQLANRED 145 (215)
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 456677777777766544
No 391
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.29 E-value=2.6e+02 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 83 QRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 83 e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
..++..|...+..++.++..+-+.|...+..+.-.
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555433
No 392
>PRK14621 hypothetical protein; Provisional
Probab=21.26 E-value=1.1e+02 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=11.7
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHH
Q 032018 85 NKEGIEEV-IARLNEALAAKKKEI 107 (148)
Q Consensus 85 r~e~L~~~-i~~l~~ql~~~~kel 107 (148)
.++.|+.. +.-++..+++..+..
T Consensus 63 D~e~LeDLI~aA~NdA~~ka~~~~ 86 (111)
T PRK14621 63 DVEMVQDLVVAAVNSALEESAKLA 86 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666653 344555555544433
No 393
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=6.7e+02 Score=23.30 Aligned_cols=89 Identities=10% Similarity=0.091 Sum_probs=53.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
..+..+++-.+++.|..++..= .+|-.-+.+.-.-+..-+ .-+|-.--.++=.+...|.+.-|..+.+-|.
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~-----~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~ 479 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQN-----SQLKLQESYWIDFDKLIEMKEHLTQEQEALT 479 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhc-----chhccccceeechhhhHHHHHHHHHHHHHHH
Confidence 3466777888888888887755 333333333332222222 1111111222334456788888888888899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032018 91 EVIARLNEALAAKKKEIS 108 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~ 108 (148)
..+.-|+.+++++...+.
T Consensus 480 ~Lv~Ilk~d~edi~~~l~ 497 (508)
T KOG3091|consen 480 KLVNILKGDQEDIKHQLI 497 (508)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 999999988888864443
No 394
>PRK14161 heat shock protein GrpE; Provisional
Probab=21.23 E-value=3.4e+02 Score=21.38 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=12.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018 77 EVLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 77 Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
++...+++-++.....+..+++++.++..++
T Consensus 12 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~ 42 (178)
T PRK14161 12 TINDIAEEIVETANPEITALKAEIEELKDKL 42 (178)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333333
No 395
>PRK14623 hypothetical protein; Provisional
Probab=21.10 E-value=1.2e+02 Score=22.14 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=12.2
Q ss_pred HhHHHHHHHH-HHHHHHHHHHHHHH
Q 032018 84 RNKEGIEEVI-ARLNEALAAKKKEI 107 (148)
Q Consensus 84 ~r~e~L~~~i-~~l~~ql~~~~kel 107 (148)
+.++.|+..| ..+++.+....+..
T Consensus 59 ~D~E~LeDLI~aAvn~A~~k~~~~~ 83 (106)
T PRK14623 59 EDKEQLEDYLVLTLNKAIEKATEIN 83 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776543 44455444444333
No 396
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.10 E-value=2.7e+02 Score=24.10 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=29.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 76 SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 76 ~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+....++.+.+.+...++.+...+..++.++.++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777778888888888888888888888777765
No 397
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.09 E-value=3.6e+02 Score=20.18 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
..+...++.|...++.+..-...++.+|..+..
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666777777777777777777777766553
No 398
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=21.03 E-value=1.7e+02 Score=19.60 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcee
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCY 63 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~y 63 (148)
+++..++..+.....=+++++.-+|+.+.|
T Consensus 5 ~~l~~l~~~l~~l~~~~~~~~~~d~~~~~Y 34 (70)
T PF10975_consen 5 QRLAELEQQLKQLEDQQEELEQRDPDSPLY 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcchH
Confidence 445555555555555566667788888888
No 399
>PRK10869 recombination and repair protein; Provisional
Probab=21.02 E-value=6.5e+02 Score=23.09 Aligned_cols=90 Identities=8% Similarity=0.046 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHH--
Q 032018 13 VNEQIVANMYTSMRSELNQIYSKITELEM----E---ASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQ-- 83 (148)
Q Consensus 13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~----q---l~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le-- 83 (148)
+...++...+..+.-.++.+...+..+-. + +.+.+.=|..|..|. +=| |+ ++++++...+
T Consensus 261 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~---rKy---g~-----~~~~~~~~~~~l 329 (553)
T PRK10869 261 SKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLA---RKH---HV-----SPEELPQHHQQL 329 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH---HHh---CC-----CHHHHHHHHHHH
Confidence 45566666666666666666665544333 2 333343344444442 223 32 4444443332
Q ss_pred -----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 84 -----------RNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 84 -----------~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
.+++.|+..++.+.+.+..+..++.+.+.+
T Consensus 330 ~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 330 LEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555555555555555544443
No 400
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=21.01 E-value=3.3e+02 Score=20.96 Aligned_cols=50 Identities=8% Similarity=0.196 Sum_probs=39.9
Q ss_pred eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018 71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120 (148)
Q Consensus 71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~ 120 (148)
+-+.++.++.++.+-++.|+..++-+..+-+.+-.+-+.+.+..|+++..
T Consensus 25 tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~t 74 (139)
T COG4768 25 TLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVAT 74 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 44566777788888888888888888888888888888888888887553
No 401
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.96 E-value=3.5e+02 Score=21.31 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=20.5
Q ss_pred CCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 032018 11 EPVNEQIVANMYTSMRSE---LNQIYSKITELEMEASEHSL 48 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q---~q~l~~q~~~Le~ql~E~~~ 48 (148)
.+.++.+++.=+|+|+.. .+.+......|+.++.+...
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~ 118 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQK 118 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777653 33444444444444443333
No 402
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=20.92 E-value=71 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018 64 RMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN 97 (148)
Q Consensus 64 rlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~ 97 (148)
-.+||+|.++.-.-....++.++..++..++.++
T Consensus 152 ~~~G~~l~~~~~~~~~~~l~~~~~~~~~i~~~l~ 185 (205)
T PF04816_consen 152 LEFGPVLLEKKDPLLKEYLQRKLRKLKRILQQLE 185 (205)
T ss_dssp HHH-HHHHHHT-HHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHhCHHHHhccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3689999999998899999999999988888877
No 403
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.83 E-value=3.1e+02 Score=19.87 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEI 107 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel 107 (148)
.....+...+.|.+..++.... ++ .+..++...|..+++.|+..|..|+.....+..-+
T Consensus 51 ~~lr~lG~sL~eI~~~l~~~~~--~~-------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 51 RNCRTLDMSLAEIRQLLRYQDK--PE-------------KSCSDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred HHHHHcCCCHHHHHHHHHhhhC--CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777653211 11 24456677777788888877777777666665443
No 404
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.80 E-value=8.5e+02 Score=26.52 Aligned_cols=51 Identities=4% Similarity=0.077 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR 64 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yr 64 (148)
.+.++-.++.++++.-+.+....+.++.+..+...=++-+.....++.+++
T Consensus 1190 ~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~ 1240 (1930)
T KOG0161|consen 1190 SLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD 1240 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 345566677777777777777777777777776666665555555544444
No 405
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.79 E-value=2.8e+02 Score=19.83 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=17.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEA 112 (148)
Q Consensus 81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~ 112 (148)
.+..+++.++..++.++..-..+..++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555555555555555555555555555544
No 406
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=20.70 E-value=3.2e+02 Score=19.72 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 34 SKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEIS 108 (148)
Q Consensus 34 ~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~ 108 (148)
.....+...+.|...+++....-+ .+..++...|..++..|+..+..|......+...+.
T Consensus 51 ~~lr~~G~sL~eI~~~l~~~~~~~---------------~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 51 SRARQVGFSLEECKELLNLWNDPN---------------RTSADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred HHHHHCCCCHHHHHHHHHhhccCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777888887776433211 133566677778888888888777777766665543
No 407
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.66 E-value=3.7e+02 Score=20.12 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE 111 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~ 111 (148)
+...+++|.+.|...++..++.-.+......++.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e 66 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNE 66 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555554444444333333
No 408
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=20.49 E-value=2.7e+02 Score=21.36 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
.+|+-|.+..-+..++..+.++...++.++.+++-.+-.++
T Consensus 59 ~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~ 99 (153)
T PF08287_consen 59 RDEIEPQINHLLDKAEKHLEKLQRREETLKAKCELQQGRLS 99 (153)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999885554444
No 409
>PRK02119 hypothetical protein; Provisional
Probab=20.37 E-value=2.8e+02 Score=18.60 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
...+..++.|+..+-.-.+++..+..++..+..+++
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554443
No 410
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=20.34 E-value=4.8e+02 Score=21.27 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH-
Q 032018 11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI- 89 (148)
Q Consensus 11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L- 89 (148)
-.|..++++..=..|+..++.+.+.-.-+-.-+.-....-.. .+ .=|-+|.+|.. +.++-..++.+++..
T Consensus 18 ~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~---s~----~sk~lG~~L~~--i~~~~r~ie~~l~~~~ 88 (223)
T cd07605 18 FNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQ---SR----GSQELGEALKQ--IVDTHKSIEASLEQVA 88 (223)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC----cchHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 468888899999999988888877766655444322221111 11 22577888755 455555555555533
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018 90 ----EEVIARLNEALAAKKKEISDFEAKYKIR 117 (148)
Q Consensus 90 ----~~~i~~l~~ql~~~~kel~~~~~k~~i~ 117 (148)
...|..|++.++.-.+.+..+.+.|...
T Consensus 89 ~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E 120 (223)
T cd07605 89 KAFHGELILPLEKKLELDQKVINKFEKDYKKE 120 (223)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554444443
No 411
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=20.28 E-value=38 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=27.5
Q ss_pred CceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 60 RKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 60 r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
+-||++.++|||=.+.+||++.|.=++-++-
T Consensus 50 kla~k~G~~vlvf~dL~DAlevL~P~v~ll~ 80 (147)
T COG4080 50 KLAFKLGKPVLVFPDLDDALEVLRPDVTLLV 80 (147)
T ss_pred HHHHHhCCcEEEehhHHHHHHhcCCceEEEe
Confidence 5689999999999999999999988777765
No 412
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.24 E-value=4.2e+02 Score=20.58 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018 14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI 93 (148)
Q Consensus 14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i 93 (148)
+.+.+...+..|+.+..........+-.+|...+.-+.. |. ++...-...+..-+..-...|
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~------D~------------~~l~~~~~~l~~~l~~~~g~I 165 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQK------DS------------RNLKTDVDELQSILAGENGDI 165 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------HHHHHHHHHHHHHHHHTT--H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------HHHHHhHHHHHHHHhcccCCH
Confidence 334455555555555555555555554444444433221 11 112222244444444555566
Q ss_pred HHHHHHHHHHHHHHH
Q 032018 94 ARLNEALAAKKKEIS 108 (148)
Q Consensus 94 ~~l~~ql~~~~kel~ 108 (148)
..|++++.....+|+
T Consensus 166 ~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 166 PQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555543
No 413
>PRK04325 hypothetical protein; Provisional
Probab=20.17 E-value=2.9e+02 Score=18.59 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
+...+..++.|+..+-.-.+++..+..++..+..++.
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555443
No 414
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=20.17 E-value=3.7e+02 Score=19.94 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=24.8
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018 75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK 115 (148)
Q Consensus 75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~ 115 (148)
-.+.+.....++..|...++.|.+.-.....++++++.+|.
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~ 82 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQ 82 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34556666777777777777776666666666666666554
No 415
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.13 E-value=5.7e+02 Score=22.06 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018 16 QIVANMYTSMRSELNQIYS-----KITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE 90 (148)
Q Consensus 16 qe~~~~~q~Lq~q~q~l~~-----q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~ 90 (148)
.-++++-+.|+++-+.|.- .|.+|+.+|.=-+.--++|++-- ....+.+..|.+.++.+.
T Consensus 213 K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq---------------~eL~dfm~eLdedVEgmq 277 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ---------------EELYDFMEELDEDVEGMQ 277 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH---------------HHHHHHHHHHHHHHhcch
Confidence 3477888888888776654 45667777666666666666532 135677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018 91 EVIARLNEALAAKKKEISDFEAKYKI 116 (148)
Q Consensus 91 ~~i~~l~~ql~~~~kel~~~~~k~~i 116 (148)
..|=-|..+|+...++|+.+.+-+.+
T Consensus 278 sTiliLQq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 278 STILILQQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999865554
No 416
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=20.11 E-value=8.2e+02 Score=23.85 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 10 REPVNEQIVANMYTSMRSELNQIYSKIT 37 (148)
Q Consensus 10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~ 37 (148)
..||...++-.++++|+.+...+..+++
T Consensus 468 ~~pp~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 468 PSPPSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888887776666544
No 417
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.08 E-value=6e+02 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032018 24 SMRSELNQIYSKITELEMEASEHSLVINAIKP 55 (148)
Q Consensus 24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~ 55 (148)
.+..+...+.+++..++.++..++..++.++.
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666667777777777777777777775544
No 418
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.02 E-value=3.9e+02 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018 78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113 (148)
Q Consensus 78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k 113 (148)
+...+++|.+.|...++..++...+.+....+++..
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKK 82 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555554444444443
Done!