BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032019
         (148 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P52024|HOLB_PSEAE DNA polymerase III subunit delta' OS=Pseudomonas aeruginosa (strain
           ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=holB
           PE=3 SV=2
          Length = 328

 Score = 30.4 bits (67), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 89  VIEPVKVREPIPEDQQRELFKWILEE----KRKVKPKDPKEKKRIDEEKAILKQF 139
           V+EP +  +PI  DQ R+L  ++++      RKV   +P E   ++   A+LK  
Sbjct: 76  VLEPEEAEKPIRVDQVRDLVGFVVQTAQLGGRKVVLLEPAEAMNVNAANALLKSL 130


>sp|B1AJZ9|FHAD1_HUMAN Forkhead-associated domain-containing protein 1 OS=Homo sapiens
           GN=FHAD1 PE=2 SV=2
          Length = 1412

 Score = 29.6 bits (65), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 49  RVEDRKRPGPHDEDNQATDAVSSGLTPASPLSEEPSVPPTVIEPVKVR----EPIPEDQQ 104
           R E R R G     NQATD    G      +++E +     +E  + R    E +   Q+
Sbjct: 665 RGEARAR-GEAQSQNQATDGREGGKALEEYITQERNRAKETLEEERKRMQELESLLAQQK 723

Query: 105 RELFKWILEEKRKVKPKDPKEKKRIDE 131
           + L K I +EK +VK    +E+ R+ E
Sbjct: 724 KALAKSITQEKNRVKEALEEEQTRVQE 750


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.132    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,911,072
Number of Sequences: 539616
Number of extensions: 2659091
Number of successful extensions: 11701
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 11341
Number of HSP's gapped (non-prelim): 505
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)