Query 032019
Match_columns 148
No_of_seqs 33 out of 35
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11169 DUF2956: Protein of u 73.5 1.3 2.7E-05 34.0 0.4 24 18-41 80-103 (103)
2 PF14147 Spore_YhaL: Sporulati 66.0 1.1 2.3E-05 30.8 -1.3 27 24-50 3-29 (52)
3 KOG3727 Mitogen inducible gene 62.3 3.7 8.1E-05 39.6 1.1 21 30-50 629-649 (664)
4 PF09911 DUF2140: Uncharacteri 59.8 6.6 0.00014 31.6 2.0 27 21-47 3-29 (187)
5 PF08078 PsaX: PsaX family; I 57.4 4.9 0.00011 26.0 0.7 21 20-40 13-34 (37)
6 PF14283 DUF4366: Domain of un 57.1 16 0.00035 30.5 3.9 34 14-50 156-189 (218)
7 PF15012 DUF4519: Domain of un 56.2 6.3 0.00014 27.4 1.1 25 22-46 32-56 (56)
8 cd03489 Topoisomer_IB_N_Ldtopo 55.9 11 0.00024 32.1 2.7 34 105-138 85-118 (212)
9 PRK10819 transport protein Ton 55.0 19 0.00041 30.3 4.0 17 17-35 8-26 (246)
10 PF14163 SieB: Superinfection 54.1 9.1 0.0002 29.0 1.8 14 130-143 81-94 (151)
11 cd00660 Topoisomer_IB_N Topois 54.1 12 0.00026 31.9 2.7 34 105-138 88-121 (215)
12 cd03490 Topoisomer_IB_N_1 Topo 52.9 13 0.00028 31.8 2.6 34 105-138 87-120 (217)
13 cd03488 Topoisomer_IB_N_htopoI 52.4 13 0.00029 31.6 2.7 34 105-138 88-121 (215)
14 PRK14745 RepA leader peptide T 51.8 8.4 0.00018 23.2 1.0 16 21-36 7-22 (26)
15 PF14854 LURAP: Leucine rich a 49.2 13 0.00028 29.4 1.9 19 102-120 49-67 (121)
16 PF14164 YqzH: YqzH-like prote 49.0 19 0.00042 25.5 2.7 22 96-117 23-44 (64)
17 PRK12757 cell division protein 48.0 91 0.002 27.0 7.1 17 101-117 81-97 (256)
18 TIGR02223 ftsN cell division p 47.0 1.2E+02 0.0027 26.3 7.8 17 102-118 116-132 (298)
19 TIGR03475 tap_IncFII_lead RepA 46.1 13 0.00028 22.5 1.2 17 21-37 7-23 (26)
20 PF08048 RepA1_leader: Tap Rep 45.8 14 0.00031 22.1 1.4 17 21-37 7-23 (25)
21 PF15055 DUF4536: Domain of un 44.6 3.2 6.8E-05 27.8 -1.7 15 33-47 14-28 (47)
22 PF07543 PGA2: Protein traffic 43.1 3.9 8.5E-05 32.1 -1.7 11 34-44 23-33 (140)
23 PF02919 Topoisom_I_N: Eukaryo 41.9 24 0.00052 30.0 2.7 34 105-138 89-122 (215)
24 PHA00406 hypothetical protein 40.9 20 0.00044 24.3 1.7 20 19-38 8-27 (48)
25 PF05337 CSF-1: Macrophage col 39.9 9.6 0.00021 33.7 0.0 26 23-48 230-255 (285)
26 PF11084 DUF2621: Protein of u 39.4 8.5 0.00018 31.0 -0.4 30 21-50 9-38 (141)
27 PRK07021 fliL flagellar basal 37.9 18 0.00039 28.1 1.2 25 108-132 109-133 (162)
28 COG3645 Uncharacterized phage- 36.5 21 0.00045 28.5 1.4 16 103-118 60-75 (135)
29 PF11337 DUF3139: Protein of u 35.9 16 0.00035 25.5 0.7 23 18-40 1-25 (85)
30 COG2229 Predicted GTPase [Gene 34.4 23 0.0005 29.6 1.4 22 19-42 79-100 (187)
31 PRK12785 fliL flagellar basal 31.0 56 0.0012 25.6 3.0 20 24-43 30-49 (166)
32 PRK10927 essential cell divisi 30.6 1.4E+02 0.003 26.9 5.7 17 101-117 115-131 (319)
33 PF11239 DUF3040: Protein of u 28.5 37 0.00081 23.6 1.5 11 98-108 2-12 (82)
34 PHA03185 UL14 tegument protein 26.6 49 0.0011 28.4 2.1 24 99-122 141-164 (214)
35 PF04375 HemX: HemX; InterPro 26.5 42 0.00091 29.4 1.7 14 27-40 37-50 (372)
36 COG4698 Uncharacterized protei 26.0 34 0.00073 29.0 1.0 30 14-43 4-33 (197)
37 KOG3088 Secretory carrier memb 25.9 1.7E+02 0.0036 26.5 5.3 41 103-148 65-105 (313)
38 COG0522 RpsD Ribosomal protein 25.8 75 0.0016 26.4 3.0 34 107-146 48-81 (205)
39 PF09328 Phytochelatin_C: Doma 25.3 55 0.0012 28.8 2.2 37 103-139 54-93 (264)
40 PF14108 DUF4281: Domain of un 24.8 20 0.00043 27.4 -0.5 24 24-47 82-105 (129)
41 COG5423 Predicted metal-bindin 23.6 61 0.0013 26.8 2.1 14 101-114 84-97 (167)
42 PF13532 2OG-FeII_Oxy_2: 2OG-F 23.4 74 0.0016 23.9 2.4 16 99-114 9-24 (194)
43 PF10883 DUF2681: Protein of u 23.1 22 0.00048 26.3 -0.5 25 24-48 6-30 (87)
44 PF11118 DUF2627: Protein of u 23.1 79 0.0017 23.3 2.3 34 16-49 38-71 (77)
45 PF13801 Metal_resist: Heavy-m 22.7 28 0.00062 23.4 0.0 22 97-118 40-61 (125)
46 KOG3204 60S ribosomal protein 21.9 35 0.00076 28.8 0.4 17 111-127 149-165 (197)
47 PF13807 GNVR: G-rich domain o 21.7 92 0.002 21.3 2.4 32 1-36 44-75 (82)
48 PRK14746 RepA leader peptide T 21.4 42 0.00091 20.3 0.6 15 23-37 8-22 (26)
49 PF11069 DUF2870: Protein of u 21.4 1E+02 0.0022 23.5 2.7 15 98-112 46-60 (98)
50 COG2411 Uncharacterized conser 20.6 58 0.0013 27.4 1.4 16 130-145 140-155 (188)
51 PF11898 DUF3418: Domain of un 20.3 65 0.0014 30.5 1.8 29 102-130 546-580 (586)
52 PF07242 DUF1430: Protein of u 20.3 74 0.0016 22.8 1.7 29 16-44 35-63 (100)
53 PF03580 Herpes_UL14: Herpesvi 20.3 46 0.00099 27.0 0.7 17 99-115 133-149 (149)
No 1
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=73.54 E-value=1.3 Score=34.03 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHHHHhhcceeeee
Q 032019 18 IRRYKPIWRILLISNLALGGYMFA 41 (148)
Q Consensus 18 ~rRYK~iwp~LLavNL~vGaYlF~ 41 (148)
.+...+=|.+|+++=+|+++|+||
T Consensus 80 ~~~~~LPW~LL~lSW~gF~~Y~~~ 103 (103)
T PF11169_consen 80 SRSSWLPWGLLVLSWIGFIAYIFM 103 (103)
T ss_pred ccccchhHHHHHHHHHHHHHHHHC
Confidence 344456899999999999999986
No 2
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=66.00 E-value=1.1 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcceeeeeeeeccchhh
Q 032019 24 IWRILLISNLALGGYMFAKARKKNSRV 50 (148)
Q Consensus 24 iwp~LLavNL~vGaYlF~rtkkkd~~~ 50 (148)
.|-.|+++-+.+.|||+++|-+.+...
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~eE~~~ 29 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAKEEREI 29 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999998776544
No 3
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.30 E-value=3.7 Score=39.65 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.1
Q ss_pred HHHhhcceeeeeeeeccchhh
Q 032019 30 ISNLALGGYMFAKARKKNSRV 50 (148)
Q Consensus 30 avNL~vGaYlF~rtkkkd~~~ 50 (148)
+|.=+||||+|+.||-||+.+
T Consensus 629 VVHEfIGGYIFLStRsKd~ne 649 (664)
T KOG3727|consen 629 VVHEFIGGYIFLSTRSKDQNE 649 (664)
T ss_pred hhhhhccceEEEEecchhccc
Confidence 355689999999999999876
No 4
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=59.78 E-value=6.6 Score=31.60 Aligned_cols=27 Identities=30% Similarity=0.269 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHhhcceeeeeeeeccc
Q 032019 21 YKPIWRILLISNLALGGYMFAKARKKN 47 (148)
Q Consensus 21 YK~iwp~LLavNL~vGaYlF~rtkkkd 47 (148)
.|..|-.||++||++++++|++--.-.
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~ 29 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPS 29 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccC
Confidence 456888899999999999998865444
No 5
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=57.45 E-value=4.9 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=15.5
Q ss_pred hhhhHHH-HHHHHHhhcceeee
Q 032019 20 RYKPIWR-ILLISNLALGGYMF 40 (148)
Q Consensus 20 RYK~iwp-~LLavNL~vGaYlF 40 (148)
-||..|- +||+.|+-|+||-|
T Consensus 13 ~frt~Wa~llLaINflVAayYF 34 (37)
T PF08078_consen 13 TFRTGWALLLLAINFLVAAYYF 34 (37)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHh
Confidence 3555676 46788999999987
No 6
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=57.10 E-value=16 Score=30.53 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=19.9
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcceeeeeeeeccchhh
Q 032019 14 KESLIRRYKPIWRILLISNLALGGYMFAKARKKNSRV 50 (148)
Q Consensus 14 K~~f~rRYK~iwp~LLavNL~vGaYlF~rtkkkd~~~ 50 (148)
|.+=|-- +.-+||++=+|.|||.+++-+|+....
T Consensus 156 kks~~g~---ll~lllv~l~gGGa~yYfK~~K~K~~~ 189 (218)
T PF14283_consen 156 KKSGMGS---LLLLLLVALIGGGAYYYFKFYKPKQEE 189 (218)
T ss_pred cccchHH---HHHHHHHHHhhcceEEEEEEecccccc
Confidence 4444444 333334444788888888777765544
No 7
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=56.25 E-value=6.3 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhhcceeeeeeeecc
Q 032019 22 KPIWRILLISNLALGGYMFAKARKK 46 (148)
Q Consensus 22 K~iwp~LLavNL~vGaYlF~rtkkk 46 (148)
..+.|.|.++=++|.+|+++.|+++
T Consensus 32 tVVlP~l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 32 TVVLPTLAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred eEehhHHHHHHHHHhheeEEeccCC
Confidence 3478999999999999999999864
No 8
>cd03489 Topoisomer_IB_N_LdtopoI_like Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I differ from human
Probab=55.87 E-value=11 Score=32.06 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|.|..++|-+-|-...+||++|-+||.-+.+
T Consensus 85 ~~i~~~~~~~~e~kK~~tkeEKk~~K~ek~~~e~ 118 (212)
T cd03489 85 TPIYEWHLREKEKKKSRTKEEKKALKEEKDKEAE 118 (212)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence 4689999999888888999999999999976653
No 9
>PRK10819 transport protein TonB; Provisional
Probab=55.04 E-value=19 Score=30.27 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=7.8
Q ss_pred hhhhhhhHHHHHH--HHHhhc
Q 032019 17 LIRRYKPIWRILL--ISNLAL 35 (148)
Q Consensus 17 f~rRYK~iwp~LL--avNL~v 35 (148)
++||+ .|.+++ ++-++|
T Consensus 8 l~rr~--~~~li~Sv~lH~al 26 (246)
T PRK10819 8 LPRRF--PWPTLLSVGLHGAV 26 (246)
T ss_pred hhhhH--HHHHHHHHHHHHHH
Confidence 45554 454444 343344
No 10
>PF14163 SieB: Superinfection exclusion protein B
Probab=54.08 E-value=9.1 Score=28.99 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhhc
Q 032019 130 DEEKAILKQFIRAE 143 (148)
Q Consensus 130 dEeKalLK~fIRak 143 (148)
.+|||+|.+|++++
T Consensus 81 ~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 81 PEEKAVLREFYIQG 94 (151)
T ss_pred HHHHHHHHHHHHCC
Confidence 47999999999987
No 11
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I diffe
Probab=54.05 E-value=12 Score=31.89 Aligned_cols=34 Identities=38% Similarity=0.546 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|.|..++|-+-|-...+||++|-+||.-+.+
T Consensus 88 ~~i~~~~~~~~e~kK~~s~eEKk~~K~ek~~~e~ 121 (215)
T cd00660 88 TPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEE 121 (215)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5689999999888888999999999999976653
No 12
>cd03490 Topoisomer_IB_N_1 Topoisomer_IB_N_1: A subgroup of the N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB. Topo IB proteins include the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanoso
Probab=52.89 E-value=13 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|.|..++|-+-|-...+||++|-+||.-+.+
T Consensus 87 ~~i~~~~~~~ke~kK~~tkeEKk~~K~ek~~~e~ 120 (217)
T cd03490 87 SLIKNHLEEEKEKKKNLNKEEKEAKKKERAKREY 120 (217)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Confidence 5689999999888888899999999999876553
No 13
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. This family may represent more than one structural domain.
Probab=52.36 E-value=13 Score=31.60 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|.|..++|-+-|-...+||++|-+||.-+.+
T Consensus 88 ~~i~~~~~~~~e~kK~~tkeEKk~~K~ek~~~e~ 121 (215)
T cd03488 88 TQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEE 121 (215)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5689999999888888999999999999976553
No 14
>PRK14745 RepA leader peptide Tap; Provisional
Probab=51.79 E-value=8.4 Score=23.20 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhhcc
Q 032019 21 YKPIWRILLISNLALG 36 (148)
Q Consensus 21 YK~iwp~LLavNL~vG 36 (148)
|-|+|-+||..|+..|
T Consensus 7 ylfl~hlllpcnisag 22 (26)
T PRK14745 7 YLFLWHLLLPCIVSAG 22 (26)
T ss_pred HHHHHHHHhhcccccc
Confidence 6788999999999876
No 15
>PF14854 LURAP: Leucine rich adaptor protein
Probab=49.19 E-value=13 Score=29.38 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 032019 102 DQQRELFKWILEEKRKVKP 120 (148)
Q Consensus 102 DeQrel~KWiLEEKRKikp 120 (148)
+|=.|=||||+|||=-+-.
T Consensus 49 NEsIe~~KWlmEEr~~l~s 67 (121)
T PF14854_consen 49 NESIEEVKWLMEERGALTS 67 (121)
T ss_pred HhhHHHHHHHHHHhhcccC
Confidence 4556779999999865543
No 16
>PF14164 YqzH: YqzH-like protein
Probab=48.97 E-value=19 Score=25.47 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhhc
Q 032019 96 REPIPEDQQRELFKWILEEKRK 117 (148)
Q Consensus 96 ~~PIpeDeQrel~KWiLEEKRK 117 (148)
.-|++.+||++|++-|.+.|-+
T Consensus 23 ~~pls~~E~~~L~~~i~~~~~~ 44 (64)
T PF14164_consen 23 CMPLSDEEWEELCKHIQERKNE 44 (64)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 5689999999999999987743
No 17
>PRK12757 cell division protein FtsN; Provisional
Probab=48.00 E-value=91 Score=27.04 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhc
Q 032019 101 EDQQRELFKWILEEKRK 117 (148)
Q Consensus 101 eDeQrel~KWiLEEKRK 117 (148)
-||||+|+.=|-.++|-
T Consensus 81 t~Eqrqlleqmq~Dmrq 97 (256)
T PRK12757 81 TDEQRQLLEQMQADMRQ 97 (256)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 47999999999999993
No 18
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=46.96 E-value=1.2e+02 Score=26.34 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhcC
Q 032019 102 DQQRELFKWILEEKRKV 118 (148)
Q Consensus 102 DeQrel~KWiLEEKRKi 118 (148)
+|||+|+.=|.++.|.-
T Consensus 116 ~eq~q~leq~~~d~r~~ 132 (298)
T TIGR02223 116 AEQRQLLEQMQADMRAA 132 (298)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 59999999999999843
No 19
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=46.14 E-value=13 Score=22.46 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhcce
Q 032019 21 YKPIWRILLISNLALGG 37 (148)
Q Consensus 21 YK~iwp~LLavNL~vGa 37 (148)
|-|+|.+||..|+.-|.
T Consensus 7 ~~FLc~~LL~cniSAg~ 23 (26)
T TIGR03475 7 YLFLCHLLLPCNISAGR 23 (26)
T ss_pred HHHHHHHHhhhcccccc
Confidence 66899999999998774
No 20
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=45.78 E-value=14 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHhhcce
Q 032019 21 YKPIWRILLISNLALGG 37 (148)
Q Consensus 21 YK~iwp~LLavNL~vGa 37 (148)
|-|+|-+||..|+.-|.
T Consensus 7 ~~FLc~lLL~CniSAg~ 23 (25)
T PF08048_consen 7 YLFLCHLLLPCNISAGR 23 (25)
T ss_pred HHHHHHHHhhhhccccc
Confidence 56899999999998773
No 21
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=44.62 E-value=3.2 Score=27.79 Aligned_cols=15 Identities=40% Similarity=0.853 Sum_probs=12.9
Q ss_pred hhcceeeeeeeeccc
Q 032019 33 LALGGYMFAKARKKN 47 (148)
Q Consensus 33 L~vGaYlF~rtkkkd 47 (148)
+|+|+|||+-+||.-
T Consensus 14 ig~G~Yv~~~ark~~ 28 (47)
T PF15055_consen 14 IGAGAYVYAQARKRM 28 (47)
T ss_pred HHHHHHHHHHHhhcc
Confidence 689999999988864
No 22
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=43.13 E-value=3.9 Score=32.08 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=9.4
Q ss_pred hcceeeeeeee
Q 032019 34 ALGGYMFAKAR 44 (148)
Q Consensus 34 ~vGaYlF~rtk 44 (148)
-||||||.|.|
T Consensus 23 IVggYiLlRPY 33 (140)
T PF07543_consen 23 IVGGYILLRPY 33 (140)
T ss_pred hhhHHHHHHHH
Confidence 47999999975
No 23
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the N-terminal DNA-binding domain found in eukaryotic topoisomerase I, which is a type IB enzymes. To cleave the DNA backbone, these enzymes must make a transient phosphotyrosine bond. The N-terminal domain of human topoisomerase I is thought to coordinate the restriction of free strand rotation during the topoisomerisation step of catalysis. A conserved tryptophan residue may be important for the DNA-interaction ability of the N-terminal domain []. Human topoisomerase I has been shown to be inhibited by camptothecin (CPT), a plant alkaloid with antitumour activity. A binding mode for the anticancer drug camptothecin has been proposed on the basis of chemical and biochemical information combined with the three-dimensional structures of topoisomerase I-DNA complexes []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=41.89 E-value=24 Score=30.05 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
+.+|.|..++|-+-|-...+||+++-+|++-|.+
T Consensus 89 ~~i~~~~~~~~e~kk~~skeEK~~~K~~k~~~~~ 122 (215)
T PF02919_consen 89 SPIYEYFEKEKEKKKNMSKEEKKALKEEKEELEE 122 (215)
T ss_dssp HHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 5789999988888888889999999999987765
No 24
>PHA00406 hypothetical protein
Probab=40.86 E-value=20 Score=24.32 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHhhccee
Q 032019 19 RRYKPIWRILLISNLALGGY 38 (148)
Q Consensus 19 rRYK~iwp~LLavNL~vGaY 38 (148)
-|+|.-|+||+++-.++|.-
T Consensus 8 ~~hRvTyrFL~vlaaalG~a 27 (48)
T PHA00406 8 LRHRVTYRFLLVLAAALGYA 27 (48)
T ss_pred HHhHHHHHHHHHHHHHhhHH
Confidence 47889999999998888854
No 25
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=39.90 E-value=9.6 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcceeeeeeeeccch
Q 032019 23 PIWRILLISNLALGGYMFAKARKKNS 48 (148)
Q Consensus 23 ~iwp~LLavNL~vGaYlF~rtkkkd~ 48 (148)
++.|-+++|=|+||+.+|+|.|.+.-
T Consensus 230 lLVPSiILVLLaVGGLLfYr~rrRs~ 255 (285)
T PF05337_consen 230 LLVPSIILVLLAVGGLLFYRRRRRSH 255 (285)
T ss_dssp --------------------------
T ss_pred ccccchhhhhhhccceeeeccccccc
Confidence 57888889999999999999988764
No 26
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=39.37 E-value=8.5 Score=31.04 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHhhcceeeeeeeeccchhh
Q 032019 21 YKPIWRILLISNLALGGYMFAKARKKNSRV 50 (148)
Q Consensus 21 YK~iwp~LLavNL~vGaYlF~rtkkkd~~~ 50 (148)
+=+.|.++|++=++||||..+|.-=|--.+
T Consensus 9 fI~~W~~vli~l~~IGGfFMFRKFLK~lPK 38 (141)
T PF11084_consen 9 FILFWVVVLIGLMAIGGFFMFRKFLKRLPK 38 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCc
Confidence 345899999999999999877765444333
No 27
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.94 E-value=18 Score=28.05 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHhhhcCCCCChHhhhhchHH
Q 032019 108 FKWILEEKRKVKPKDPKEKKRIDEE 132 (148)
Q Consensus 108 ~KWiLEEKRKikpkd~~EKkridEe 132 (148)
+--+|-+|+--.-.+.+-|.++-+|
T Consensus 109 ii~~Ls~k~~~~L~~~eGk~~Lk~e 133 (162)
T PRK07021 109 LLLLLSRKHAAELATEEGKQKLAAE 133 (162)
T ss_pred HHHHHhcCCHHHhcCHHHHHHHHHH
Confidence 3334545544444455555555544
No 28
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=36.47 E-value=21 Score=28.52 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhcC
Q 032019 103 QQRELFKWILEEKRKV 118 (148)
Q Consensus 103 eQrel~KWiLEEKRKi 118 (148)
-|++||.||+|++==+
T Consensus 60 ge~~l~~~L~e~~~l~ 75 (135)
T COG3645 60 GENRLFAWLRENKYLI 75 (135)
T ss_pred CHHHHHHHHHHCCEEE
Confidence 4789999999986433
No 29
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.92 E-value=16 Score=25.53 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHh--hcceeee
Q 032019 18 IRRYKPIWRILLISNL--ALGGYMF 40 (148)
Q Consensus 18 ~rRYK~iwp~LLavNL--~vGaYlF 40 (148)
|+++|.+|-+|++.-+ ++|.++|
T Consensus 1 MKK~kii~iii~li~i~li~~~~~~ 25 (85)
T PF11337_consen 1 MKKKKIILIIIILIVISLIIGIYYF 25 (85)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Confidence 6788998887666654 4565555
No 30
>COG2229 Predicted GTPase [General function prediction only]
Probab=34.40 E-value=23 Score=29.58 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHhhcceeeeee
Q 032019 19 RRYKPIWRILLISNLALGGYMFAK 42 (148)
Q Consensus 19 rRYK~iwp~LLavNL~vGaYlF~r 42 (148)
.||+|||-.|+=- ++|+-+|+-
T Consensus 79 ~RF~fm~~~l~~g--a~gaivlVD 100 (187)
T COG2229 79 ERFKFMWEILSRG--AVGAIVLVD 100 (187)
T ss_pred HHHHHHHHHHhCC--cceEEEEEe
Confidence 6999999987655 777777763
No 31
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.96 E-value=56 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcceeeeeee
Q 032019 24 IWRILLISNLALGGYMFAKA 43 (148)
Q Consensus 24 iwp~LLavNL~vGaYlF~rt 43 (148)
+..+||++=.|.|+|+|+..
T Consensus 30 ~~~~lll~~~g~g~~f~~~~ 49 (166)
T PRK12785 30 AAAAVLLLGGGGGGFFFFFS 49 (166)
T ss_pred HHHHHHHHhcchheEEEEEe
Confidence 34455566667789999876
No 32
>PRK10927 essential cell division protein FtsN; Provisional
Probab=30.60 E-value=1.4e+02 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhc
Q 032019 101 EDQQRELFKWILEEKRK 117 (148)
Q Consensus 101 eDeQrel~KWiLEEKRK 117 (148)
-||||+|+.=|-.++|-
T Consensus 115 T~EQrQlLeqmqaDmrq 131 (319)
T PRK10927 115 TPEQRQLLEQMQADMRQ 131 (319)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 46999999999999993
No 33
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.52 E-value=37 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=8.8
Q ss_pred CCCHHHHHHHH
Q 032019 98 PIPEDQQRELF 108 (148)
Q Consensus 98 PIpeDeQrel~ 108 (148)
|+||+|||.|-
T Consensus 2 ~LSe~E~r~L~ 12 (82)
T PF11239_consen 2 PLSEHEQRRLE 12 (82)
T ss_pred CCCHHHHHHHH
Confidence 78999999553
No 34
>PHA03185 UL14 tegument protein; Provisional
Probab=26.61 E-value=49 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCC
Q 032019 99 IPEDQQRELFKWILEEKRKVKPKD 122 (148)
Q Consensus 99 IpeDeQrel~KWiLEEKRKikpkd 122 (148)
..|++--=|-+||||++=||.|..
T Consensus 141 l~e~DEaLLt~W~Le~aP~v~~~~ 164 (214)
T PHA03185 141 MSPEDSDLLIMWQLGSAPAVRPGD 164 (214)
T ss_pred ccccHHHHHHHHHHhcCCCCCCCC
Confidence 667777889999999999998775
No 35
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=26.48 E-value=42 Score=29.39 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=7.1
Q ss_pred HHHHHHhhcceeee
Q 032019 27 ILLISNLALGGYMF 40 (148)
Q Consensus 27 ~LLavNL~vGaYlF 40 (148)
+|+++=+|+|+|.|
T Consensus 37 lll~~alg~~~~~~ 50 (372)
T PF04375_consen 37 LLLALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445556666
No 36
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.03 E-value=34 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=22.6
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcceeeeeee
Q 032019 14 KESLIRRYKPIWRILLISNLALGGYMFAKA 43 (148)
Q Consensus 14 K~~f~rRYK~iwp~LLavNL~vGaYlF~rt 43 (148)
|++=+.-.|.+|-.|||.|..+.+|++++-
T Consensus 4 kk~~~n~WKw~f~iLLAln~l~~~~i~~~v 33 (197)
T COG4698 4 KKGTLNYWKWLFFILLALNTLLAVLIALFV 33 (197)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhheee
Confidence 444445567799999999998888877764
No 37
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.94 E-value=1.7e+02 Score=26.50 Aligned_cols=41 Identities=34% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHHHHhhcCCCCC
Q 032019 103 QQRELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQFIRAESIPQL 148 (148)
Q Consensus 103 eQrel~KWiLEEKRKikpkd~~EKkridEeKalLK~fIRaksiP~l 148 (148)
-|.||.+|=-|=+|| ++|=+|-.+|-+=+-+-||.+.-|.|
T Consensus 65 kq~eL~~rqeEL~Rk-----e~ELdRREr~~a~~g~~~~~nNWPPL 105 (313)
T KOG3088|consen 65 KQAELLKKQEELRRK-----EQELDRRERALARAGIVIRENNWPPL 105 (313)
T ss_pred HHHHHHHHHHHHHHH-----HHHHhHHHHHHhhccCcccccCCCCC
Confidence 489999999999987 55666655666666677777776643
No 38
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=25.78 E-value=75 Score=26.40 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCCChHhhhhchHHHHHHHHHHhhcCCC
Q 032019 107 LFKWILEEKRKVKPKDPKEKKRIDEEKAILKQFIRAESIP 146 (148)
Q Consensus 107 l~KWiLEEKRKikpkd~~EKkridEeKalLK~fIRaksiP 146 (148)
.|.+.|.||||++.--. ..|+.+++-|.+++-++
T Consensus 48 ~yg~qL~ekqkl~~~yg------~~ekqf~~~l~~a~~l~ 81 (205)
T COG0522 48 DYGLQLREKQKLRAFYG------VLEKQFRRYLKEAGRLK 81 (205)
T ss_pred HHHHHHHHHHHhhhhcc------HHHHHHHHHHHHHhccC
Confidence 58889999999999887 67888999888888765
No 39
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=25.28 E-value=55 Score=28.80 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhcCCC---CChHhhhhchHHHHHHHHH
Q 032019 103 QQRELFKWILEEKRKVKP---KDPKEKKRIDEEKAILKQF 139 (148)
Q Consensus 103 eQrel~KWiLEEKRKikp---kd~~EKkridEeKalLK~f 139 (148)
.=+++.|||-|=||.-.- =+.+||.|+.---.+|+|.
T Consensus 54 n~~~FIKWVaEVRR~Edg~~~LS~EEk~RL~lKe~VL~Qv 93 (264)
T PF09328_consen 54 NFGEFIKWVAEVRRQEDGGSSLSKEEKERLALKEEVLQQV 93 (264)
T ss_pred hHHHHhhhheeEEecccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999776 4588999988777778874
No 40
>PF14108 DUF4281: Domain of unknown function (DUF4281)
Probab=24.83 E-value=20 Score=27.39 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcceeeeeeeeccc
Q 032019 24 IWRILLISNLALGGYMFAKARKKN 47 (148)
Q Consensus 24 iwp~LLavNL~vGaYlF~rtkkkd 47 (148)
.|-=+|+.||+||.+++....++.
T Consensus 82 ~W~H~LafDLfvGrwi~~d~~~~g 105 (129)
T PF14108_consen 82 GWVHYLAFDLFVGRWIYLDARRRG 105 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 799999999999999987665544
No 41
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=23.59 E-value=61 Score=26.84 Aligned_cols=14 Identities=21% Similarity=0.454 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q 032019 101 EDQQRELFKWILEE 114 (148)
Q Consensus 101 eDeQrel~KWiLEE 114 (148)
+|||+..|.||||-
T Consensus 84 eeE~k~~~~~mlel 97 (167)
T COG5423 84 EEEKKRSLRKMLEL 97 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 55789999999983
No 42
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=23.44 E-value=74 Score=23.86 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 032019 99 IPEDQQRELFKWILEE 114 (148)
Q Consensus 99 IpeDeQrel~KWiLEE 114 (148)
|+++||.+|+.++.++
T Consensus 9 ls~~e~~~l~~~l~~~ 24 (194)
T PF13532_consen 9 LSEEEAAELLNELRES 24 (194)
T ss_dssp S-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7999999999999964
No 43
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.10 E-value=22 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcceeeeeeeeccch
Q 032019 24 IWRILLISNLALGGYMFAKARKKNS 48 (148)
Q Consensus 24 iwp~LLavNL~vGaYlF~rtkkkd~ 48 (148)
+|..++++=++++||++.+.++--.
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~ 30 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKK 30 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999876443
No 44
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=23.06 E-value=79 Score=23.25 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHHhhcceeeeeeeeccchh
Q 032019 16 SLIRRYKPIWRILLISNLALGGYMFAKARKKNSR 49 (148)
Q Consensus 16 ~f~rRYK~iwp~LLavNL~vGaYlF~rtkkkd~~ 49 (148)
+++-.+=.+.-+.++-=-++|+|+|.|-||++.-
T Consensus 38 ~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV 71 (77)
T PF11118_consen 38 SLWLQFLAGLLLFAIGVGFIAGFILHRDRKRNKV 71 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhheeecccccc
Confidence 4444444444444455567899999999998753
No 45
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.66 E-value=28 Score=23.39 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC
Q 032019 97 EPIPEDQQRELFKWILEEKRKV 118 (148)
Q Consensus 97 ~PIpeDeQrel~KWiLEEKRKi 118 (148)
--++++||.+|..=+.+...++
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~ 61 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEM 61 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 3588888888877776655543
No 46
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=21.87 E-value=35 Score=28.81 Aligned_cols=17 Identities=59% Similarity=0.542 Sum_probs=13.3
Q ss_pred HHHhhhcCCCCChHhhh
Q 032019 111 ILEEKRKVKPKDPKEKK 127 (148)
Q Consensus 111 iLEEKRKikpkd~~EKk 127 (148)
=||||||.|.+..-.||
T Consensus 149 tLEeKRKeK~~~~y~kK 165 (197)
T KOG3204|consen 149 TLEEKRKEKAKIHYQKK 165 (197)
T ss_pred HHHHHHhHhhhhhHHHH
Confidence 49999999998855533
No 47
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.71 E-value=92 Score=21.26 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCChhhhhhhhhhHHHHHHHHHhhcc
Q 032019 1 MDPTQRQTPPSYSKESLIRRYKPIWRILLISNLALG 36 (148)
Q Consensus 1 ~dp~~~~ppp~~pK~~f~rRYK~iwp~LLavNL~vG 36 (148)
+|++..|.-|.-||..++- +..+++..=+|+|
T Consensus 44 vd~A~~P~~P~~P~~~lil----~l~~~~Gl~lgi~ 75 (82)
T PF13807_consen 44 VDPAIVPDKPVSPKRALIL----ALGLFLGLILGIG 75 (82)
T ss_pred ccccccCCCCCCCcHHHHH----HHHHHHHHHHHHH
Confidence 4888888888888766553 3334444444444
No 48
>PRK14746 RepA leader peptide Tap; Provisional
Probab=21.40 E-value=42 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhhcce
Q 032019 23 PIWRILLISNLALGG 37 (148)
Q Consensus 23 ~iwp~LLavNL~vGa 37 (148)
++|-+||..|+.-|.
T Consensus 8 l~~~lLLpCniSAg~ 22 (26)
T PRK14746 8 LLRLLLLPCNISAGR 22 (26)
T ss_pred HHHHHHhcceecccc
Confidence 468889999998774
No 49
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=21.36 E-value=1e+02 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHHH
Q 032019 98 PIPEDQQRELFKWIL 112 (148)
Q Consensus 98 PIpeDeQrel~KWiL 112 (148)
+|+|++|++|+-++-
T Consensus 46 ~isee~qk~mm~~~~ 60 (98)
T PF11069_consen 46 VISEEEQKAMMAYYY 60 (98)
T ss_pred CCCHHHHHHHHHHHH
Confidence 489999999988875
No 50
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=58 Score=27.44 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhhcCC
Q 032019 130 DEEKAILKQFIRAESI 145 (148)
Q Consensus 130 dEeKalLK~fIRaksi 145 (148)
++|+.||+-|++.+||
T Consensus 140 ~~~~~iL~~~~~~gsl 155 (188)
T COG2411 140 ERDKRILELFVEEGSL 155 (188)
T ss_pred HHHHHHHHHHHHcCcH
Confidence 5789999999999986
No 51
>PF11898 DUF3418: Domain of unknown function (DUF3418); InterPro: IPR024590 This entry represents the uncharacterised C-terminal domain of HrpA.
Probab=20.33 E-value=65 Score=30.48 Aligned_cols=29 Identities=38% Similarity=0.717 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhh------cCCCCChHhhhhch
Q 032019 102 DQQRELFKWILEEKR------KVKPKDPKEKKRID 130 (148)
Q Consensus 102 DeQrel~KWiLEEKR------Kikpkd~~EKkrid 130 (148)
+.+.+-|.|||||=| .+++.-+---|||+
T Consensus 546 ~~~l~~~rWmlEElRVSlFAQeLgT~~pVS~KRL~ 580 (586)
T PF11898_consen 546 DPALEEFRWMLEELRVSLFAQELGTAMPVSEKRLE 580 (586)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHH
Confidence 678899999999987 35555544444443
No 52
>PF07242 DUF1430: Protein of unknown function (DUF1430); InterPro: IPR006541 These sequences represent a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (IPR006540 from INTERPRO) []. Others may be associated with uncharacterised proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=20.30 E-value=74 Score=22.78 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHHHHhhcceeeeeeee
Q 032019 16 SLIRRYKPIWRILLISNLALGGYMFAKAR 44 (148)
Q Consensus 16 ~f~rRYK~iwp~LLavNL~vGaYlF~rtk 44 (148)
+|.+|||-.+-+.+++|+..++-.+..++
T Consensus 35 sf~~~hk~yl~~~~~~~~~~~~~~~~~~~ 63 (100)
T PF07242_consen 35 SFFERHKRYLISQLIVWILGLGISFILSK 63 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999888888888877765554443
No 53
>PF03580 Herpes_UL14: Herpesvirus UL14-like protein; InterPro: IPR005207 This is a family of Herpesvirus proteins including UL14. UL14 protein is a minor component of the virion tegument [] and is expressed late in infection. UL14 protein can influence the intracellular localization patterns of a number of proteins belonging to the capsid or the DNA encapsidation machinery [].
Probab=20.28 E-value=46 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHhh
Q 032019 99 IPEDQQRELFKWILEEK 115 (148)
Q Consensus 99 IpeDeQrel~KWiLEEK 115 (148)
..+++--=|.+||||++
T Consensus 133 l~~~deaLL~~W~Le~~ 149 (149)
T PF03580_consen 133 LDEEDEALLTQWQLESA 149 (149)
T ss_pred cCchHHHHHHHHHhccC
Confidence 78888888999999975
Done!