Query 032019
Match_columns 148
No_of_seqs 33 out of 35
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 13:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 74.8 0.37 2.7E-05 27.2 0.5 22 21-42 5-27 (29)
2 d1k4ta3 e.15.1.1 (A:201-430) E 54.7 4.8 0.00035 31.4 3.6 34 105-138 103-136 (230)
3 d1oisa_ e.15.1.1 (A:) Eukaryot 50.3 4.7 0.00034 31.3 2.8 34 105-138 95-128 (223)
4 d1husa_ a.75.1.1 (A:) Ribosoma 33.7 21 0.0016 24.5 3.9 27 96-122 79-106 (139)
5 d1ic8a2 a.35.1.1 (A:87-180) He 30.7 18 0.0013 24.6 3.0 23 97-119 66-88 (94)
6 d1rssa_ a.75.1.1 (A:) Ribosoma 26.9 36 0.0026 23.3 4.2 30 95-124 76-106 (145)
7 d1v54i_ f.23.3.1 (I:) Mitochon 19.1 36 0.0026 22.2 2.6 31 9-39 5-35 (73)
8 d2qalg1 a.75.1.1 (G:2-151) Rib 18.6 41 0.003 23.4 3.0 31 95-125 85-116 (150)
9 d2iuwa1 b.82.2.10 (A:70-279) A 17.8 36 0.0026 23.2 2.5 19 96-114 25-43 (210)
10 d1q5qh_ d.153.1.4 (H:) Proteas 16.0 47 0.0034 22.6 2.8 20 98-117 204-223 (224)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=74.81 E-value=0.37 Score=27.21 Aligned_cols=22 Identities=32% Similarity=0.833 Sum_probs=16.6
Q ss_pred hhhHHHH-HHHHHhhcceeeeee
Q 032019 21 YKPIWRI-LLISNLALGGYMFAK 42 (148)
Q Consensus 21 YK~iwp~-LLavNL~vGaYlF~r 42 (148)
|+-.|-+ ||+.|.-|++|.|+-
T Consensus 5 frt~wa~lllainflvaayyfaa 27 (29)
T d1jb0x_ 5 FRTFWAVLLLAINFLVAAYYFAA 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457765 567899999999863
No 2
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.72 E-value=4.8 Score=31.39 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|+|+..+|-+-|-...+||++|-+|+.-+.+
T Consensus 103 ~~i~~~~~~~ke~kK~~skeEKk~~Keek~~~~~ 136 (230)
T d1k4ta3 103 TQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLK 136 (230)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999977654
No 3
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.31 E-value=4.7 Score=31.31 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhcCCCCChHhhhhchHHHHHHHH
Q 032019 105 RELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQ 138 (148)
Q Consensus 105 rel~KWiLEEKRKikpkd~~EKkridEeKalLK~ 138 (148)
..+|+|+.+||-+-|-...+||++|-+|+.-+.+
T Consensus 95 ~~i~~~~~~~kE~kk~~tkEEKk~~K~~k~~~~~ 128 (223)
T d1oisa_ 95 TKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEE 128 (223)
T ss_dssp HHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Confidence 5789999999988899999999999999877654
No 4
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.71 E-value=21 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=18.7
Q ss_pred cCCCCHHHHHH-HHHHHHHhhhcCCCCC
Q 032019 96 REPIPEDQQRE-LFKWILEEKRKVKPKD 122 (148)
Q Consensus 96 ~~PIpeDeQre-l~KWiLEEKRKikpkd 122 (148)
.-||++++|+- -++||++.=|+-+.++
T Consensus 79 Pv~i~~~rr~~lAirwi~~~a~~r~~~~ 106 (139)
T d1husa_ 79 PVEVRPDRRVSLGLRWLVQYARLRNEKT 106 (139)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred eEeeChHHHHHHHHHHHHHHHHHcCCCC
Confidence 44677766554 4899999988755444
No 5
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.73 E-value=18 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.712 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCC
Q 032019 97 EPIPEDQQRELFKWILEEKRKVK 119 (148)
Q Consensus 97 ~PIpeDeQrel~KWiLEEKRKik 119 (148)
.|++.--.+.||-|.+-+||.|+
T Consensus 66 ~~M~~~KR~alYtWylr~kR~i~ 88 (94)
T d1ic8a2 66 TPMKTQKRAALYTWYVRKQREVA 88 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTTH
T ss_pred CCccHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999999999984
No 6
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}
Probab=26.94 E-value=36 Score=23.35 Aligned_cols=30 Identities=13% Similarity=0.428 Sum_probs=21.3
Q ss_pred ccCCCCHHHHHHH-HHHHHHhhhcCCCCChH
Q 032019 95 VREPIPEDQQREL-FKWILEEKRKVKPKDPK 124 (148)
Q Consensus 95 ~~~PIpeDeQrel-~KWiLEEKRKikpkd~~ 124 (148)
+..||+.++|.-| ++|||+-=|+-+-++-.
T Consensus 76 vPv~i~~~rr~~lAirwil~aa~~r~~k~~~ 106 (145)
T d1rssa_ 76 VPMEVSPRRQQSLALRWLVQAANQRPERRAA 106 (145)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHTTSSCSSHH
T ss_pred eeeccCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3457777776654 89999998876666543
No 7
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.07 E-value=36 Score=22.15 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCCCChhhhhhhhhhHHHHHHHHHhhcceee
Q 032019 9 PPSYSKESLIRRYKPIWRILLISNLALGGYM 39 (148)
Q Consensus 9 pp~~pK~~f~rRYK~iwp~LLavNL~vGaYl 39 (148)
|-|+-++.+.+|-|+-...-+++-|+++++.
T Consensus 5 ~KPqmrGLl~~~lk~hl~~a~~lsl~~a~~~ 35 (73)
T d1v54i_ 5 AKPQMRGLLARRLRFHIVGAFMVSLGFATFY 35 (73)
T ss_dssp CCCCCBSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999997777788888887754
No 8
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}
Probab=18.59 E-value=41 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=21.5
Q ss_pred ccCCCCHHHHHHH-HHHHHHhhhcCCCCChHh
Q 032019 95 VREPIPEDQQREL-FKWILEEKRKVKPKDPKE 125 (148)
Q Consensus 95 ~~~PIpeDeQrel-~KWiLEEKRKikpkd~~E 125 (148)
+.-+|+++.|.-| ++||++-=|+-+.++-.+
T Consensus 85 vP~~v~~~r~~~lAirWi~~aar~r~~k~~~~ 116 (150)
T d2qalg1 85 VPVEVRPVRRNALAMRWIVEAARKRGDKSMAL 116 (150)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHTTSCCSSHHH
T ss_pred eeeecChHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3446777666554 899999988866665443
No 9
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.77 E-value=36 Score=23.23 Aligned_cols=19 Identities=0% Similarity=0.027 Sum_probs=16.6
Q ss_pred cCCCCHHHHHHHHHHHHHh
Q 032019 96 REPIPEDQQRELFKWILEE 114 (148)
Q Consensus 96 ~~PIpeDeQrel~KWiLEE 114 (148)
..=|+.+||..||++|++|
T Consensus 25 p~fLs~~e~~~Ll~~L~~e 43 (210)
T d2iuwa1 25 PGFVDVKEADWILEQLCQD 43 (210)
T ss_dssp TTSSCHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhh
Confidence 4468999999999999987
No 10
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}
Probab=16.00 E-value=47 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHhhhc
Q 032019 98 PIPEDQQRELFKWILEEKRK 117 (148)
Q Consensus 98 PIpeDeQrel~KWiLEEKRK 117 (148)
-+++|+-.+|++++-+||+.
T Consensus 204 ~l~~~ei~~~~~~~~~~~~~ 223 (224)
T d1q5qh_ 204 HVSEETTSELARRIVAERTE 223 (224)
T ss_dssp ECCHHHHHHHHHHHHHHHHT
T ss_pred EcCHHHHHHHHHHHHHHHhc
Confidence 38999999999999999863
Done!