BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032020
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 66  GHALVFNLGFLFTLIYASFYYCLDKK---AGSLAALLCFACWVGASLLSNRLGFSL 118
           GH L+  L   F L++  F  C DK+    GS+A  + F+  +G     N  G S+
Sbjct: 174 GHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASM 229


>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
           By Electron Crystallography
          Length = 301

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 66  GHALVFNLGFLFTLIYASFYYCLDKK---AGSLAALLCFACWVGASLLSNRLGFSL 118
           GH L+  L   F L++  F  C DK+    GS+A  + F+  +G     N  G S+
Sbjct: 135 GHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASM 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.145    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,321,297
Number of Sequences: 62578
Number of extensions: 151827
Number of successful extensions: 233
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.7 bits)