BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032020
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13737|YDR2_SCHPO Uncharacterized endoplasmic reticulum membrane protein C16E8.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16E8.02 PE=4 SV=2
Length = 222
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 9 LEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFLPCGLFGHA 68
L + ++FY AYHSN +N+ IH + + +L + L+ LH +F+ L
Sbjct: 4 LSRSYSFYAAYHSNPVNIKIHQVCIPLLLLTALVLLH------------NFV-ITLINSK 50
Query: 69 LVFNLGFLFTLIYASFYYCLDKKAGSL-AALLCFACWVGASLLSNRLGFSLAWKVAVAAQ 127
L N+ L L Y FY LD G L + +L ++ S L SL + A
Sbjct: 51 LQINVAHLVGLAYQIFYVTLDPLDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSAAVVH 110
Query: 128 LICWTGQFLGHGIFE 142
+ICW QF+GHG+FE
Sbjct: 111 VICWILQFIGHGVFE 125
>sp|P25338|YGB0_YEAST Uncharacterized endoplasmic reticulum membrane protein YGL010W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YGL010W PE=1 SV=2
Length = 174
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 1 MGKSGLLDLEKHFAFYGAYHSNKINVLIHTLFVWPILFSTLMFLHFTPSVCDFSDKVSFL 60
MG+ GLLDL FY YH N NVLIH++FV ILFS LH S
Sbjct: 1 MGE-GLLDLRSQLGFYKFYHHNPKNVLIHSIFVPTILFSGSCMLHRVKIYQSIS------ 53
Query: 61 PCGLFGHALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACWVGASLLSNRLGFSLAW 120
L L LF++ Y Y + + +L+ +R+ L +
Sbjct: 54 --------LTAVLSVLFSIFYCLLY------LPTGLLAGVLLLLLNLALIDHRV--DLTF 97
Query: 121 KVAVAAQLICWTGQFLGHGIFEGTSS 146
K + I W QF+GHG+FE
Sbjct: 98 KQELGLFTIGWIFQFVGHGVFEKRRP 123
>sp|Q41963|TIP12_ARATH Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2
Length = 253
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 67 HALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACW--VGASLLSNRL--GFSLAWKV 122
+ALVF + F L+Y + +D K GSL + A VGA++L+ G S+ V
Sbjct: 144 NALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 203
Query: 123 AVAAQLICWT 132
A ++ WT
Sbjct: 204 AFGPAVVSWT 213
>sp|P25818|TIP11_ARATH Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 67 HALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACW--VGASLLSNRL--GFSLAWKV 122
+A VF + F L+Y + +D K GSL + A VGA++L+ G S+ V
Sbjct: 143 NAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAV 202
Query: 123 AVAAQLICWT---------GQFLGHGI 140
A ++ WT G +G GI
Sbjct: 203 AFGPAVVSWTWTNHWVYWAGPLVGGGI 229
>sp|C6C0U6|GCH4_DESAD GTP cyclohydrolase folE2 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=folE2 PE=3
SV=1
Length = 256
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 83 SFYYCLDKKA--GSLAALLCFACWVGASLLSNRLGFSLAWKVAV 124
SF YCL KK+ ++ + C V ++ + L F+L KV V
Sbjct: 98 SFPYCLQKKSPVSGRKGIMSYECTVEGEMVGDNLEFTLGVKVPV 141
>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus
GN=Rab3gap2 PE=1 SV=2
Length = 1366
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 106 GASLLSNRLGFSLAWKVAVAAQLICWTGQFLGHGIFEGTSSFG 148
GA LL F + K +A+QL+ TGQ L H +F + G
Sbjct: 1257 GADLLGEEAIFQVQDKEVLASQLLVLTGQRLAHALFHTQTKEG 1299
>sp|P50156|TIP11_ORYSJ Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1
PE=2 SV=1
Length = 250
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 67 HALVFNLGFLFTLIYASFYYCLDKKAGSLAALLCFACW--VGASLLSNRL--GFSLAWKV 122
ALV + F L+Y + +D K GSL + A VGA++L G S+ V
Sbjct: 142 EALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAV 201
Query: 123 AVAAQLICWT 132
+ L+ W+
Sbjct: 202 SFGPALVSWS 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.145 0.489
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,519,164
Number of Sequences: 539616
Number of extensions: 1960690
Number of successful extensions: 5940
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5935
Number of HSP's gapped (non-prelim): 14
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)