Query 032020
Match_columns 148
No_of_seqs 107 out of 423
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_F Cytochrome B559 subunit 26.7 29 0.001 20.2 1.4 15 26-40 20-34 (44)
2 3arc_E Cytochrome B559 subunit 13.6 1.3E+02 0.0045 19.8 2.5 21 25-45 18-38 (83)
3 3dd7_B PHD, prevent HOST death 12.8 65 0.0022 16.3 0.7 12 129-140 6-17 (23)
4 2i3t_B Spindle assembly checkp 12.0 98 0.0033 18.9 1.4 29 1-29 21-50 (54)
5 3mao_A Methionine-R-sulfoxide 10.5 68 0.0023 22.2 0.4 6 142-147 78-83 (105)
6 1bh9_B TAFII28; histone fold, 7.8 1.6E+02 0.0056 19.3 1.5 18 10-27 3-20 (89)
7 1l6x_B Minimized B-domain of p 7.4 2.9E+02 0.0099 15.2 2.1 17 7-23 1-17 (34)
8 1wv3_A Similar to DNA segregat 6.8 1E+02 0.0034 23.7 0.0 13 12-24 194-206 (238)
9 3ixz_B Potassium-transporting 6.8 4.1E+02 0.014 21.1 3.6 19 71-90 35-53 (290)
10 3pa8_A Toxin B; CLAN CD cystei 6.5 62 0.0021 25.8 -1.4 10 134-143 106-115 (254)
No 1
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=26.72 E-value=29 Score=20.24 Aligned_cols=15 Identities=47% Similarity=0.529 Sum_probs=12.2
Q ss_pred hhhhhhhhhHHHHHH
Q 032020 26 VLIHTLFVWPILFST 40 (148)
Q Consensus 26 ~~IH~i~VP~Il~s~ 40 (148)
.++|-.+||.++|-.
T Consensus 20 lAvH~lavPtVfflG 34 (44)
T 3arc_F 20 VAVHTLAVPTIFFLG 34 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhcccccceeecc
Confidence 479999999998643
No 2
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=13.62 E-value=1.3e+02 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHh
Q 032020 25 NVLIHTLFVWPILFSTLMFLH 45 (148)
Q Consensus 25 N~~IH~i~VP~Il~s~~~ll~ 45 (148)
=-.||.|-+|.++.+...+.+
T Consensus 18 YWvIHsITIPslFiaGwLFVs 38 (83)
T 3arc_E 18 YWVIHSITIPALFIAGWLFVS 38 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccchHHHhhhhhhc
Confidence 347999999999988765543
No 3
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=12.85 E-value=65 Score=16.31 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=9.5
Q ss_pred HHHHHHHHhhcc
Q 032020 129 ICWTGQFLGHGI 140 (148)
Q Consensus 129 v~Wi~QFiGH~v 140 (148)
++||+|-.||.+
T Consensus 6 FaaIm~~hg~t~ 17 (23)
T 3dd7_B 6 FASLFDTLDSTN 17 (26)
T ss_pred HHHHHHHHhHHH
Confidence 468899999865
No 4
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=12.05 E-value=98 Score=18.88 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=14.0
Q ss_pred CCCCCCCCHHHHHHH-HhhhhcCcchhhhh
Q 032020 1 MGKSGLLDLEKHFAF-YGAYHSNKINVLIH 29 (148)
Q Consensus 1 m~~~~~~~L~~~l~f-Y~~yH~N~~N~~IH 29 (148)
||+..-+++++-++- .+.|+++.+|+.-|
T Consensus 21 ~~~~~E~sfeEllA~sRg~~~~~w~~~~~~ 50 (54)
T 2i3t_B 21 KGGRLEFSLEEVLAISRNVYKRVRTNRKHH 50 (54)
T ss_dssp ----CBCCHHHHHHHTTTCSSCC-------
T ss_pred CcccceeeHHHHHHHhcCcccccccccccc
Confidence 445556789887763 68899999998655
No 5
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=10.47 E-value=68 Score=22.16 Aligned_cols=6 Identities=17% Similarity=0.263 Sum_probs=2.7
Q ss_pred ccCCCC
Q 032020 142 EGTSSF 147 (148)
Q Consensus 142 Egr~P~ 147 (148)
||-+|.
T Consensus 78 DGP~pt 83 (105)
T 3mao_A 78 DGPKPG 83 (105)
T ss_dssp CSSSTT
T ss_pred CCcCCC
Confidence 454443
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=7.82 E-value=1.6e+02 Score=19.34 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhcCcchhh
Q 032020 10 EKHFAFYGAYHSNKINVL 27 (148)
Q Consensus 10 ~~~l~fY~~yH~N~~N~~ 27 (148)
++|++.|.+|.|-.-|+.
T Consensus 3 ~eQ~~Rye~~Rrs~f~k~ 20 (89)
T 1bh9_B 3 EEQLNRYEMYRRSAFPKA 20 (89)
T ss_dssp HHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 578989999888777764
No 7
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=7.40 E-value=2.9e+02 Score=15.16 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=13.6
Q ss_pred CCHHHHHHHHhhhhcCc
Q 032020 7 LDLEKHFAFYGAYHSNK 23 (148)
Q Consensus 7 ~~L~~~l~fY~~yH~N~ 23 (148)
||..+|=+||..-|-.-
T Consensus 1 ~~~~qQnaFYevLh~~n 17 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPN 17 (34)
T ss_dssp CCHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 57788999999988653
No 8
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=6.85 E-value=1e+02 Score=23.66 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCcc
Q 032020 12 HFAFYGAYHSNKI 24 (148)
Q Consensus 12 ~l~fY~~yH~N~~ 24 (148)
.-..|-.|||+|+
T Consensus 194 ~~~~yP~y~RSPR 206 (238)
T 1wv3_A 194 QADDYNTYHRSPR 206 (238)
T ss_dssp -------------
T ss_pred ccccCCccccCCc
Confidence 3456999999998
No 9
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=6.77 E-value=4.1e+02 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.488 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHHHhhch
Q 032020 71 FNLGFLFTLIYASFYYCLDK 90 (148)
Q Consensus 71 ~n~a~l~~~~~~~yY~~Ld~ 90 (148)
-+|+. +.+.|+++|..|-.
T Consensus 35 ~sW~~-IllFYliFY~~Lag 53 (290)
T 3ixz_B 35 SRWVW-ISLYYVAFYVVMSG 53 (290)
T ss_pred hhHHH-HHHHHHHHHHHHHH
Confidence 35665 46788888876643
No 10
>3pa8_A Toxin B; CLAN CD cysteine protease, protease, toxin-peptide in complex; HET: 621 IHP; 2.00A {Clostridium difficile} PDB: 3pee_B*
Probab=6.49 E-value=62 Score=25.78 Aligned_cols=10 Identities=50% Similarity=0.693 Sum_probs=0.0
Q ss_pred HHHhhccccc
Q 032020 134 QFLGHGIFEG 143 (148)
Q Consensus 134 QFiGH~vfEg 143 (148)
|++|||--|+
T Consensus 106 qlVGHGr~e~ 115 (254)
T 3pa8_A 106 TFIGHGKDEF 115 (254)
T ss_dssp EEECCCCSSC
T ss_pred EEEecCcCCC
Done!