Query 032020
Match_columns 148
No_of_seqs 107 out of 423
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032020.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032020hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtf1 f.23.38.1 (F:11-45) Cy 27.7 13 0.00097 19.3 1.4 14 26-39 11-24 (35)
2 d1u5sb2 g.39.1.3 (B:103-137) P 18.9 7.1 0.00052 20.5 -0.8 10 135-144 10-19 (35)
3 d2axte1 f.23.38.1 (E:3-84) Cyt 11.6 77 0.0056 19.3 2.5 19 26-44 18-36 (82)
4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 10.2 54 0.004 20.3 1.5 18 10-27 3-20 (89)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 9.5 42 0.0031 16.1 0.5 10 15-24 14-23 (27)
6 d1fs1b2 d.42.1.1 (B:2-68) Cycl 7.3 89 0.0065 17.4 1.5 13 10-22 48-60 (61)
7 d1oedc_ f.36.1.1 (C:) Acetylch 7.1 3.1E+02 0.023 18.2 4.9 16 31-46 8-23 (260)
8 d1uiya_ c.14.1.3 (A:) Enoyl-Co 6.5 51 0.0037 22.8 0.0 7 140-146 245-251 (253)
9 d1ynya1 b.92.1.3 (A:2-52,A:385 6.2 87 0.0063 19.9 1.1 11 137-147 115-125 (127)
10 d1zvfa1 b.82.1.20 (A:1-175) 3- 6.1 1.5E+02 0.011 20.4 2.4 25 1-25 1-25 (175)
No 1
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.72 E-value=13 Score=19.29 Aligned_cols=14 Identities=50% Similarity=0.593 Sum_probs=11.7
Q ss_pred hhhhhhhhhHHHHH
Q 032020 26 VLIHTLFVWPILFS 39 (148)
Q Consensus 26 ~~IH~i~VP~Il~s 39 (148)
.++|.+.||.++|-
T Consensus 11 lavh~l~vptvfFl 24 (35)
T d2axtf1 11 VAVHTLAVPTIFFL 24 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhH
Confidence 47899999999863
No 2
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.94 E-value=7.1 Score=20.45 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=8.3
Q ss_pred HHhhcccccC
Q 032020 135 FLGHGIFEGT 144 (148)
Q Consensus 135 FiGH~vfEgr 144 (148)
|.||.-+|++
T Consensus 10 F~G~rhyE~~ 19 (35)
T d1u5sb2 10 FLGHRHYERK 19 (35)
T ss_dssp CSSSCCEEET
T ss_pred cCCchhhhhc
Confidence 6799988886
No 3
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.59 E-value=77 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=15.5
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q 032020 26 VLIHTLFVWPILFSTLMFL 44 (148)
Q Consensus 26 ~~IH~i~VP~Il~s~~~ll 44 (148)
=.||.+-+|.++.+...+.
T Consensus 18 WvIHsiTIPslFiaGwlFV 36 (82)
T d2axte1 18 WVIHSITIPALFIAGWLFV 36 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecccHHHHhhhhhe
Confidence 4699999999998877653
No 4
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.18 E-value=54 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhcCcchhh
Q 032020 10 EKHFAFYGAYHSNKINVL 27 (148)
Q Consensus 10 ~~~l~fY~~yH~N~~N~~ 27 (148)
++|++-|..|+|-..|+.
T Consensus 3 ~eQ~~RyE~fRRs~~~K~ 20 (89)
T d1bh9b_ 3 EEQLNRYEMYRRSAFPKA 20 (89)
T ss_dssp HHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHhhCCHH
Confidence 689999999999888875
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.53 E-value=42 Score=16.13 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=5.9
Q ss_pred HHhhhhcCcc
Q 032020 15 FYGAYHSNKI 24 (148)
Q Consensus 15 fY~~yH~N~~ 24 (148)
||++|.|-++
T Consensus 14 f~aayqqykr 23 (27)
T d2e74g1 14 FYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcC
Confidence 6666666543
No 6
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.27 E-value=89 Score=17.36 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=10.0
Q ss_pred HHHHHHHhhhhcC
Q 032020 10 EKHFAFYGAYHSN 22 (148)
Q Consensus 10 ~~~l~fY~~yH~N 22 (148)
-+..-+|-.||+|
T Consensus 48 L~kVieyc~~H~~ 60 (61)
T d1fs1b2 48 LKKVIQWCTHHKD 60 (61)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccC
Confidence 3456789999987
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.11 E-value=3.1e+02 Score=18.23 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHhc
Q 032020 31 LFVWPILFSTLMFLHF 46 (148)
Q Consensus 31 i~VP~Il~s~~~ll~~ 46 (148)
+-+|.++.+++.++.+
T Consensus 8 ~~~P~~~~~~l~~~~f 23 (260)
T d1oedc_ 8 FITPCVLISFLASLAF 23 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHe
Confidence 5689999988877764
No 8
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}
Probab=6.47 E-value=51 Score=22.80 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=5.1
Q ss_pred ccccCCC
Q 032020 140 IFEGTSS 146 (148)
Q Consensus 140 vfEgr~P 146 (148)
+.|||||
T Consensus 245 f~eKR~P 251 (253)
T d1uiya_ 245 FFEKRPP 251 (253)
T ss_dssp HHTTSCC
T ss_pred HhCCCCC
Confidence 4588887
No 9
>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}
Probab=6.18 E-value=87 Score=19.86 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=6.1
Q ss_pred hhcccccCCCC
Q 032020 137 GHGIFEGTSSF 147 (148)
Q Consensus 137 GH~vfEgr~P~ 147 (148)
|+|.|-+|+||
T Consensus 115 g~G~fi~R~~f 125 (127)
T d1ynya1 115 GSGQYIKRTTF 125 (127)
T ss_dssp TCCCBCCCCCC
T ss_pred CCceEecCCCC
Confidence 45555556665
No 10
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.06 E-value=1.5e+02 Score=20.40 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=20.2
Q ss_pred CCCCCCCCHHHHHHHHhhhhcCcch
Q 032020 1 MGKSGLLDLEKHFAFYGAYHSNKIN 25 (148)
Q Consensus 1 m~~~~~~~L~~~l~fY~~yH~N~~N 25 (148)
|++...+|+.+|+++=+.-=+-|+|
T Consensus 1 m~~~~P~n~~~Wieen~~llkPPV~ 25 (175)
T d1zvfa1 1 MFNTTPINIDKWLKENEGLLKPPVN 25 (175)
T ss_dssp CSCCCCEEHHHHHHHHGGGGSSSSC
T ss_pred CCccccccHHHHHHHhHHhcCCCcC
Confidence 7788889999999988777777763
Done!