BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032021
         (148 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8RWA2|MED9_ARATH Mediator of RNA polymerase II transcription subunit 9
           OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1
          Length = 244

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query: 74  QHHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133
           Q HQSLAS+FHL  ++E LAD IENGTRDQ SDALVNELN+HF+KCQQLL+SIS SL +K
Sbjct: 145 QQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNSHFDKCQQLLNSISGSLGSK 204

Query: 134 AMTVEGQRRKLEE 146
            MTV+GQ+R +EE
Sbjct: 205 TMTVDGQKRNVEE 217


>sp|Q54FZ8|Y8923_DICDI Putative uncharacterized transmembrane protein DDB_G0290641
            OS=Dictyostelium discoideum GN=DDB_G0290641 PE=4 SV=2
          Length = 5801

 Score = 37.0 bits (84), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 26   SNQDNLFLSPQHQQQFYQQPTQFPQQQFQQQGRTPQQQQQPQQQQQQNQHHQSLASNFHL 85
            S+ ++L ++P    +  +QP +  QQ+  QQ   PQQ ++PQ+ Q      Q ++ ++ +
Sbjct: 5588 SHLESLQITPIPHDKDEEQPEKPQQQEIHQQPEKPQQPEKPQELQSTETPGQEVSVDYKI 5647

Query: 86   LH 87
            L+
Sbjct: 5648 LY 5649


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.122    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,128,724
Number of Sequences: 539616
Number of extensions: 2074629
Number of successful extensions: 75829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 14385
Number of HSP's gapped (non-prelim): 20032
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)