Query 032021
Match_columns 148
No_of_seqs 19 out of 21
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 13:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8c_D Glucose-repressible alc 92.9 0.031 1.1E-06 48.6 1.3 12 8-19 9-20 (727)
2 3agt_A Hemerythrin-like domain 79.8 4.1 0.00014 28.4 5.5 45 82-127 23-71 (136)
3 3gwk_C SAG1039, putative uncha 78.8 3.4 0.00012 26.6 4.5 55 85-140 34-88 (98)
4 2hmq_A Hemerythrin; oxygen tra 64.6 6.8 0.00023 26.9 3.6 42 82-127 25-66 (113)
5 1tqg_A Chemotaxis protein CHEA 63.9 24 0.00083 23.1 6.1 42 85-127 63-104 (105)
6 1rp3_B Anti sigma factor FLGM; 56.0 15 0.0005 25.0 4.0 30 87-116 58-87 (88)
7 2vs0_A Virulence factor ESXA; 51.9 21 0.00073 22.3 4.0 53 85-138 32-84 (97)
8 2lch_A Protein OR38; structura 48.6 55 0.0019 21.8 5.9 43 85-128 64-106 (113)
9 3cqx_C BAG family molecular ch 47.2 20 0.0007 25.8 3.7 32 111-142 26-68 (88)
10 3zbh_A ESXA; unknown function, 46.8 12 0.0004 23.6 2.2 54 85-139 35-88 (99)
11 3cra_A Protein MAZG; tandem-re 45.3 22 0.00076 29.2 4.1 35 75-115 30-64 (265)
12 1i5n_A Chemotaxis protein CHEA 44.1 80 0.0027 22.4 6.5 44 85-129 65-108 (146)
13 3a6m_A Protein GRPE, HSP-70 co 41.8 43 0.0015 25.5 5.0 32 77-112 69-100 (177)
14 4ani_A Protein GRPE; chaperone 41.4 55 0.0019 26.0 5.7 45 78-124 110-154 (213)
15 3qc1_A Immunoglobulin-binding 40.5 64 0.0022 25.6 6.0 42 85-126 36-80 (243)
16 3ufe_A Transcriptional antiter 39.8 70 0.0024 20.4 5.2 49 76-130 38-90 (111)
17 2mhr_A Myohemerythrin; oxygen 38.7 35 0.0012 23.3 3.7 42 82-127 25-66 (118)
18 3ogi_B ESXO, putative ESAT-6-l 38.6 18 0.00063 26.4 2.4 56 85-140 34-89 (99)
19 4ioe_A Secreted protein ESXB; 38.2 5.3 0.00018 25.3 -0.5 36 103-138 52-87 (93)
20 3fav_B ESAT-6, 6 kDa early sec 37.9 26 0.00088 22.2 2.8 51 86-137 32-82 (94)
21 1s4k_A Putative cytoplasmic pr 37.1 44 0.0015 25.1 4.3 36 97-133 39-74 (120)
22 2ld6_A Chemotaxis protein CHEA 36.5 68 0.0023 22.5 5.1 44 85-129 62-105 (139)
23 1ik9_A DNA repair protein XRCC 34.4 23 0.00077 27.9 2.5 39 107-145 153-199 (213)
24 1wrd_A TOM1, target of MYB pro 33.5 67 0.0023 22.3 4.6 37 96-132 32-68 (103)
25 1zxa_A CGMP-dependent protein 33.0 20 0.00068 24.4 1.7 20 106-125 38-57 (67)
26 2yru_A Steroid receptor RNA ac 30.0 44 0.0015 24.1 3.2 40 85-125 61-101 (118)
27 1ez3_A Syntaxin-1A; three heli 29.7 44 0.0015 22.5 3.0 27 104-130 51-77 (127)
28 3pwx_A Putative flagellar HOOK 29.5 1.1E+02 0.0037 23.6 5.6 62 84-147 153-214 (239)
29 3h6p_C ESAT-6-like protein ESX 28.9 61 0.0021 20.8 3.5 38 99-136 45-82 (96)
30 2ooc_A Histidine phosphotransf 27.8 1.4E+02 0.0049 20.2 5.5 37 88-126 70-106 (113)
31 4i0x_A ESAT-6-like protein MAB 27.2 70 0.0024 20.8 3.6 37 103-139 43-79 (94)
32 3gor_A Putative metal-dependen 26.1 1.2E+02 0.0042 19.6 4.7 51 85-135 51-108 (157)
33 3h0g_K DNA-directed RNA polyme 26.0 66 0.0023 23.5 3.6 38 105-142 83-120 (123)
34 1h99_A Transcription antitermi 25.6 68 0.0023 22.3 3.5 49 76-129 148-200 (224)
35 1dkg_A Nucleotide exchange fac 24.0 76 0.0026 24.4 3.8 34 77-112 89-123 (197)
36 3kyj_A CHEA3, putative histidi 23.8 2E+02 0.0069 20.5 6.3 44 85-129 69-112 (144)
37 2vch_A Hydroquinone glucosyltr 23.8 41 0.0014 27.6 2.3 23 97-120 452-474 (480)
38 2f23_A Anti-cleavage anti-GREA 23.7 1.7E+02 0.006 21.0 5.5 39 87-125 28-71 (156)
39 3fav_A ESAT-6-like protein ESX 23.5 80 0.0027 20.3 3.3 33 103-135 50-82 (101)
40 1d1d_A Protein (capsid protein 23.2 59 0.002 26.6 3.2 48 87-134 188-238 (262)
41 1o3x_A ADP-ribosylation factor 22.3 2.1E+02 0.0072 21.0 5.8 36 95-130 69-105 (140)
42 2a0b_A HPT domain; sensory tra 22.3 1.8E+02 0.0061 19.4 5.4 40 89-128 78-120 (125)
43 3myf_A Sensor protein; HPT, hi 21.8 2E+02 0.0068 19.7 6.5 46 85-130 71-116 (119)
44 2lp4_A Chemotaxis protein CHEA 21.1 2.6E+02 0.009 20.9 6.4 44 85-129 65-108 (225)
45 1nvp_D Transcription initiatio 21.1 1.2E+02 0.004 21.9 4.1 30 87-119 13-42 (108)
46 4h59_A PIAA, iron-compound ABC 20.6 1.5E+02 0.0051 21.3 4.6 45 86-133 130-174 (308)
47 3rip_A Gamma-tubulin complex c 20.5 1.5E+02 0.0052 25.6 5.3 50 83-132 583-634 (677)
48 1nh2_D Transcription initiatio 20.5 1.2E+02 0.0041 22.5 4.1 30 87-119 17-46 (121)
49 2dvk_A UPF0130 protein APE0816 20.3 38 0.0013 26.4 1.4 28 87-114 3-30 (188)
50 3rjm_B Caspase-2; caspase-2, c 20.3 1.1E+02 0.0038 21.6 3.8 31 88-118 40-70 (117)
51 1oxz_A ADP-ribosylation factor 20.2 2.3E+02 0.0078 21.9 5.8 36 95-130 94-130 (186)
52 2ov9_A Hypothetical protein; r 20.0 55 0.0019 24.9 2.2 43 85-127 27-69 (216)
No 1
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=92.89 E-value=0.031 Score=48.63 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=0.0
Q ss_pred CcceeccCCCCC
Q 032021 8 GSWNMMPSIPSH 19 (148)
Q Consensus 8 GSwtMiPs~~s~ 19 (148)
.+..|+|..+.+
T Consensus 9 ~~~~~~~~~~~~ 20 (727)
T 4b8c_D 9 NSIGMVPTVGTP 20 (727)
T ss_dssp ------------
T ss_pred cccCCCcccCCc
Confidence 455677744433
No 2
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=79.79 E-value=4.1 Score=28.40 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcch----HHHHHHHHHhHHHHHHHHHHhh
Q 032021 82 NFHLLHLMENLADAIENGTRDQQS----DALVNELNNHFEKCQQLLSSIS 127 (148)
Q Consensus 82 hFhL~~lve~Ladaie~GtRDQ~s----DaLv~EL~s~FekcQQLLnSis 127 (148)
|=.|+-+|.+|.+++..|. +... ++|+.-...||..=+.++..+.
T Consensus 23 Hk~L~~lin~l~~a~~~~~-~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~ 71 (136)
T 3agt_A 23 HKRLVDYINDLYRAARRRD-MDKAREVFDALKNYAVEHFGYEERLFADYA 71 (136)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5668999999999999987 4443 4455555889998888887753
No 3
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=78.79 E-value=3.4 Score=26.61 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccceehhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQ 140 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVegQ 140 (148)
|.-.|+.|.+.-+ |.-=..+++.++++...|++..++|++|+..|..-+-+++.-
T Consensus 34 L~~~~~~l~~~W~-G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~ 88 (98)
T 3gwk_C 34 LTQEQAVIDENWD-GSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQT 88 (98)
T ss_dssp HHHHHHHHHHHBC-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777776665 444467799999999999999999999999987766655443
No 4
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=64.64 E-value=6.8 Score=26.93 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhh
Q 032021 82 NFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (148)
Q Consensus 82 hFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis 127 (148)
|=.|+-+|.+|.++ ..| |. .++|++-...||..=+.++..+.
T Consensus 25 Hk~L~~~in~l~~a-~~~--~~-l~~L~~y~~~HF~~EE~lM~~~~ 66 (113)
T 2hmq_A 25 HKTLFNGILLLSQA-DNA--DH-LNELRRCTGKHFLNEQQLMQASQ 66 (113)
T ss_dssp HHHHHHHHHHHHHC-CSH--HH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh-cch--HH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 55688999999999 777 43 78888888999999899888764
No 5
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=63.89 E-value=24 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis 127 (148)
+-+-+|++.+.+..|...- +.+++..|..-++....++..+.
T Consensus 63 la~~lE~~l~~~r~~~~~~-~~~~~~~l~~~~d~l~~~l~~~~ 104 (105)
T 1tqg_A 63 LCHTLENILDKARNSEIKI-TSDLLDKIFAGVDMITRMVDKIV 104 (105)
T ss_dssp HHHHHHHHHHHHHTTSSCC-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777777777787654 47889999888998888887653
No 6
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=56.02 E-value=15 Score=25.04 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhH
Q 032021 87 HLMENLADAIENGTRDQQSDALVNELNNHF 116 (148)
Q Consensus 87 ~lve~Ladaie~GtRDQ~sDaLv~EL~s~F 116 (148)
--|+.|..+|++|+-.=+++.+..-|-..|
T Consensus 58 ~kV~~iK~aI~~GtY~vd~~~iA~kml~~~ 87 (88)
T 1rp3_B 58 KKVKELKEKIEKGEYEVSDEKVVKGLIEFF 87 (88)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999888877765544
No 7
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=51.85 E-value=21 Score=22.28 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccceeh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVE 138 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVe 138 (148)
|--.|+.|.+.-+..+. ..+.+..+++...|++...+|..|+..|..-+-+++
T Consensus 32 L~~~~~~L~~~W~G~a~-~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~ 84 (97)
T 2vs0_A 32 LTRAQGEIAANWEGQAF-SRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQ 84 (97)
T ss_dssp HHHHHHHHHHHSCSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666655544444 567888899999999999999999998876655443
No 8
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=48.65 E-value=55 Score=21.83 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISE 128 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~ 128 (148)
+-|-+|++-+.+..|...-. .+++..|..-++.-..++..+..
T Consensus 64 lah~~E~~l~~~r~~~~~~~-~~l~~~l~~~~d~l~~~l~~~~~ 106 (113)
T 2lch_A 64 VLHTIMNLVDKMLNSEIKIT-SDLIDKVKKKLDMVTRELDKKVS 106 (113)
T ss_dssp HHHHHHHHHHHHTSTTTCCC-HHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678888888888877644 77888888888888888877654
No 9
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=47.18 E-value=20 Score=25.76 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHHhhhhcccccc-----------eehhhhh
Q 032021 111 ELNNHFEKCQQLLSSISESLDTKAM-----------TVEGQRR 142 (148)
Q Consensus 111 EL~s~FekcQQLLnSis~sl~tk~~-----------TVegQk~ 142 (148)
++.+-=++|+.+||+-+.....-.+ |+|+||+
T Consensus 26 D~~~ar~~c~~ylnACss~~~~gp~DqkFqs~vi~CtlDDQKk 68 (88)
T 3cqx_C 26 DLGNAKSHLMSLYSACSSEVPPGPVDQKFQSIVIGCALEDQKK 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHhcccHhhHHH
Confidence 4556678999999998877533333 8888875
No 10
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=46.82 E-value=12 Score=23.63 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccceehh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEG 139 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVeg 139 (148)
|.-.|+.|.+.-+ |.-=..+++.++++...|.+...+|+.|+..|..-+-+++.
T Consensus 35 L~~~v~~L~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 35 LDQMSHTLQGIWE-GASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp HHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655443 33335567788899999999999999999988776655443
No 11
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=45.27 E-value=22 Score=29.16 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 032021 75 HHQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNH 115 (148)
Q Consensus 75 ~hqsLAShFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~ 115 (148)
-|.||+.+ |+-=+-.++|||++|++ +.|..||..=
T Consensus 30 T~~Sl~~y--l~eE~~Ev~daI~~~d~----~~l~eELGDv 64 (265)
T 3cra_A 30 TFATIAPY--TLEETYEVLDAIAREDF----DDLRGELGDL 64 (265)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHHTTCH----HHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHHHHHHcCCH----HHHHHHHHHH
Confidence 58899888 77777889999999854 7788887643
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=44.06 E-value=80 Score=22.38 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~s 129 (148)
|-|-+|++-+.+..|..+-. .+++..|..-++....++..+...
T Consensus 65 lah~lE~~l~~~r~g~~~~~-~~l~~~l~~~~D~l~~~l~~~~~~ 108 (146)
T 1i5n_A 65 TTHLMENLLDEARRGEMQLN-TDIINLFLETKDIMQEQLDAYKNS 108 (146)
T ss_dssp HHHHHHHHHHHHHTTSSCCC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677888888888877554 788888888888888888887654
No 13
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=41.80 E-value=43 Score=25.54 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=22.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 032021 77 QSLASNFHLLHLMENLADAIENGTRDQQSDALVNEL 112 (148)
Q Consensus 77 qsLAShFhL~~lve~Ladaie~GtRDQ~sDaLv~EL 112 (148)
..++.- |||+++||--|++.+..| .++|+.-+
T Consensus 69 e~~~~~--LLpVlDnlerAl~~~~~~--~~~l~~Gv 100 (177)
T 3a6m_A 69 LKALRA--LLPVLDDLDRALEFAEAS--PESIRQGV 100 (177)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTGGGC--HHHHHHHH
T ss_pred HHHHHH--HHHHHhHHHHHHHhhhcc--HHHHHHHH
Confidence 455555 999999999999987644 44455443
No 14
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=41.38 E-value=55 Score=25.98 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=28.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHH
Q 032021 78 SLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLS 124 (148)
Q Consensus 78 sLAShFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLn 124 (148)
.++.- |||+++||--|++...-+...++|+.-+.--+.+...+|.
T Consensus 110 ~~~~~--LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~ 154 (213)
T 4ani_A 110 SLASD--LLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK 154 (213)
T ss_dssp HHHHH--HHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 44444 9999999999999776665556666554444443333343
No 15
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=40.49 E-value=64 Score=25.64 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCCcchHH---HHHHHHHhHHHHHHHHHHh
Q 032021 85 LLHLMENLADAIENGTRDQQSDA---LVNELNNHFEKCQQLLSSI 126 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDa---Lv~EL~s~FekcQQLLnSi 126 (148)
||--..++-+.||+++-..+|.+ .|...-..|++|..+++.+
T Consensus 36 lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l 80 (243)
T 3qc1_A 36 LFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQL 80 (243)
T ss_dssp HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667788889999887677775 4455577999999999985
No 16
>3ufe_A Transcriptional antiterminator (BGLG family); extended helix bundle, arcimboldo; 1.50A {Bacillus subtilis} PDB: 3gwh_A
Probab=39.80 E-value=70 Score=20.38 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----HHHHHHHHHHhhhhc
Q 032021 76 HQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNH----FEKCQQLLSSISESL 130 (148)
Q Consensus 76 hqsLAShFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~----FekcQQLLnSis~sl 130 (148)
...|+.| |-++++++.. |..-.+.|.++.++... |+-+..++.-|...+
T Consensus 38 ~~~L~~H--l~~~i~Ri~~----~~~i~n~~~l~~~ik~~y~~~y~~a~~i~~~ie~~~ 90 (111)
T 3ufe_A 38 YLRLIRH--IRFTIERIKK----EEPTKEPEKLMLLLKNEYPLCYNTAWKLIKILQQTL 90 (111)
T ss_dssp HHHHHHH--HHHHHHHHHH----TCCCCTTHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHc----CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 4566766 7788888754 43333445677777654 555666666655543
No 17
>2mhr_A Myohemerythrin; oxygen binding; 1.30A {Themiste zostericola} SCOP: a.24.4.1 PDB: 1a7d_A 1a7e_A
Probab=38.72 E-value=35 Score=23.32 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhh
Q 032021 82 NFHLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (148)
Q Consensus 82 hFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis 127 (148)
|=.|+-+|.+|.++.. |. ..++|+.-...||..=+.++..+.
T Consensus 25 Hk~L~~~in~l~~a~~-~~---~l~~L~~y~~~HF~~EE~~M~~~~ 66 (118)
T 2mhr_A 25 HKKIFKGIFDCIRDNS-AP---NLATLVKVTTNHFTHEEAMMDAAK 66 (118)
T ss_dssp HHHHHHHHHHHHHSCC-HH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc-hh---HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5568889999998843 32 378888888999999888888753
No 18
>3ogi_B ESXO, putative ESAT-6-like protein 7; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_B
Probab=38.57 E-value=18 Score=26.39 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccceehhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQ 140 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVegQ 140 (148)
|.-+|++|+.+==.|+---.|+.|+.+.+.-|.+-.-.|++|+.-|..-+.+.|.+
T Consensus 34 l~~~v~~iaga~W~G~Aq~sf~~lM~rwn~a~r~l~~aL~sI~dnir~nA~~ye~~ 89 (99)
T 3ogi_B 34 MWASAQNISGAGWSGMAEATSLDTMAQMNQAFRNIVNMLHGVRDGLVRDANNYEQQ 89 (99)
T ss_dssp HHHHHHCCC----CCCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55677777777667888889999999999999999999999999998877766554
No 19
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=38.19 E-value=5.3 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHhhhhcccccceeh
Q 032021 103 QQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVE 138 (148)
Q Consensus 103 Q~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVe 138 (148)
..+.+.++++...|.+...+|+.|+..|...+-+++
T Consensus 52 ~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~ 87 (93)
T 4ioe_A 52 AKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFR 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778899999999999999998876655443
No 20
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=37.89 E-value=26 Score=22.19 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhccccccee
Q 032021 86 LHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTV 137 (148)
Q Consensus 86 ~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TV 137 (148)
.-.|+.|...-+ |.-=...++..+++...|++-.++|+.|+..|.+-..+.
T Consensus 32 ~~~v~~l~~~W~-G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y 82 (94)
T 3fav_B 32 KQSLTKLAAAWG-GSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAM 82 (94)
T ss_dssp HHHHHHTGGGGT-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 444445688899999999999999999998876654443
No 21
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=37.10 E-value=44 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=30.7
Q ss_pred hcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccc
Q 032021 97 ENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133 (148)
Q Consensus 97 e~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk 133 (148)
|+|+|.=. +++|+.+..--.+.+++|+.|...|+..
T Consensus 39 E~G~~~IP-~~i~e~~~~m~~~R~~~i~~i~~kin~~ 74 (120)
T 1s4k_A 39 EAGDIPIS-PEIIARLKEMKARRQRRINAIVDKINNR 74 (120)
T ss_dssp HHTSSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999888 8899999988899999999988876554
No 22
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=36.46 E-value=68 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~s 129 (148)
+-+-+|++.+++..|..+-. .+++..|..-++....++..+...
T Consensus 62 lah~lE~~l~~lr~g~~~~~-~~l~~~l~~~~D~l~~~l~~~~~~ 105 (139)
T 2ld6_A 62 LCHTLENILDKARNSEIKIT-SDLLDKIFAGVDMITRMVDKIVSE 105 (139)
T ss_dssp HHHHHHHHHHHHHHTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55678888888888887644 678888888888888888887554
No 23
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.36 E-value=23 Score=27.86 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHH--------HHHHHHhhhhcccccceehhhhhhhh
Q 032021 107 ALVNELNNHFEKC--------QQLLSSISESLDTKAMTVEGQRRKLE 145 (148)
Q Consensus 107 aLv~EL~s~Fekc--------QQLLnSis~sl~tk~~TVegQk~kLE 145 (148)
.-+++|.+++|+| .+|+..+..=|++|+..++.++++|.
T Consensus 153 ~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 153 RDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456777777777 46788888889999999999997775
No 24
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=33.49 E-value=67 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.3
Q ss_pred HhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhccc
Q 032021 96 IENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDT 132 (148)
Q Consensus 96 ie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~t 132 (148)
...|..+...++|+.||.+.-.+++.-|-.+..+...
T Consensus 32 ~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~d 68 (103)
T 1wrd_A 32 LVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIAN 68 (103)
T ss_dssp SCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3456666667799999999888888887776655433
No 25
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.01 E-value=20 Score=24.39 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 032021 106 DALVNELNNHFEKCQQLLSS 125 (148)
Q Consensus 106 DaLv~EL~s~FekcQQLLnS 125 (148)
|+.|++|.++.+||+.+|.+
T Consensus 38 d~eI~eLr~~LdK~qsVl~~ 57 (67)
T 1zxa_A 38 EEEIQELKRKLHKCQSVLPV 57 (67)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999874
No 26
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.96 E-value=44 Score=24.10 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhHHHHHHHHHH
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNEL-NNHFEKCQQLLSS 125 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL-~s~FekcQQLLnS 125 (148)
.+.-+-.|+.||++|.-+.. .++..+| +++|+.|-+-+--
T Consensus 61 v~~~L~~l~~al~~~dy~~A-~~ih~~l~t~~~~E~~~Wm~G 101 (118)
T 2yru_A 61 VKKRMALLVQELLHHQWDAA-DDIHRSLMVDHVTEVSQWMVG 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHH-HHHHHHHHHSTHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHCcHHHHHhHHHH
Confidence 34556778899999988887 4455555 8999998765543
No 27
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=29.67 E-value=44 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHhhhhc
Q 032021 104 QSDALVNELNNHFEKCQQLLSSISESL 130 (148)
Q Consensus 104 ~sDaLv~EL~s~FekcQQLLnSis~sl 130 (148)
..|+|+.+++..+.+|...|.+|..+.
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999987764
No 28
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=29.45 E-value=1.1e+02 Score=23.57 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccceehhhhhhhhhc
Q 032021 84 HLLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRRKLEER 147 (148)
Q Consensus 84 hL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVegQk~kLEE~ 147 (148)
.++..+.++.++++.++. ...+.+...-..++.+-.-+..+-+.|+++-..+|-.+..|++.
T Consensus 153 ~vf~~l~~~~~~l~~~~~--~~~~~~~~al~~ld~a~~~v~~~ra~lGa~~nrle~~~~~l~~~ 214 (239)
T 3pwx_A 153 NVLNQIDALIAEFEKPSP--NFQAEVDASLNAIDDTMANVLGAMTEIGGRHNNLDLMDGAHSEN 214 (239)
T ss_dssp CHHHHHHHHHHHHHSCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 577788888899988762 22344555566677766667777788888888888777777653
No 29
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=28.87 E-value=61 Score=20.77 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=26.1
Q ss_pred CCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccccce
Q 032021 99 GTRDQQSDALVNELNNHFEKCQQLLSSISESLDTKAMT 136 (148)
Q Consensus 99 GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~T 136 (148)
|.-=...+++..+....|++-.++|++|+..|.+-...
T Consensus 45 G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~~a~~~ 82 (96)
T 3h6p_C 45 GDTGITYQGWQTQWNQALEDLVRAYQSMSGTHESNTMA 82 (96)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444568889999999999999999999887665443
No 30
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=27.82 E-value=1.4e+02 Score=20.24 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHh
Q 032021 88 LMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSI 126 (148)
Q Consensus 88 lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSi 126 (148)
-|..++..+|...|+ .++++..|...|+.+...|+..
T Consensus 70 ~l~~~c~~lE~~~~~--~~~~~~~L~~a~~~~~~~l~~~ 106 (113)
T 2ooc_A 70 NLGEVCERCEAGQES--LEGVRTALDAALLDIAAYAHEQ 106 (113)
T ss_dssp HHHHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889998888 6788899999999988888764
No 31
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=27.23 E-value=70 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHhhhhcccccceehh
Q 032021 103 QQSDALVNELNNHFEKCQQLLSSISESLDTKAMTVEG 139 (148)
Q Consensus 103 Q~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVeg 139 (148)
..+++..++....+.+-.++|+.|+..|..-..+.+.
T Consensus 43 ~af~~~~~~w~~~a~~l~~~L~~i~~~l~~aa~~y~~ 79 (94)
T 4i0x_A 43 DAYRSGWDEMQDGATKVWNALTDIASTLGSNAAAFHA 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999998776665543
No 32
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=26.14 E-value=1.2e+02 Score=19.56 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhHHHHHHHHHHhhhhcccccc
Q 032021 85 LLHLMENLADAIENGTRD-------QQSDALVNELNNHFEKCQQLLSSISESLDTKAM 135 (148)
Q Consensus 85 L~~lve~Ladaie~GtRD-------Q~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~ 135 (148)
|+-........+..|..+ ...++|+..+..-++++..+|++++..--.+.+
T Consensus 51 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~l~~l~~~~l~~~~ 108 (157)
T 3gor_A 51 MLFSFYNFANTAKHGDPSLFRQKIEEPETNLAKLAETYTEKTRQLIESMSDDDFDRTL 108 (157)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGCCCCCCCCCHHHHHHHHHHHHHHHHHTCCTTGGGCEE
T ss_pred HHHHHHHHHHHhhccccccccccccCcHHHHHHHHHHHHHHHHHHHHhccHHHHhccc
Confidence 555555566667666543 334568888888888888899887654333333
No 33
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.05 E-value=66 Score=23.49 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhcccccceehhhhh
Q 032021 105 SDALVNELNNHFEKCQQLLSSISESLDTKAMTVEGQRR 142 (148)
Q Consensus 105 sDaLv~EL~s~FekcQQLLnSis~sl~tk~~TVegQk~ 142 (148)
-|||.+-+..=.+.|..|.+.+...+..+.+.++|..+
T Consensus 83 ~eaL~~al~~L~~~~~~l~~~F~~~~~~~~~~~~~~~~ 120 (123)
T 3h0g_K 83 KQVIVDAAKSLITHLEEIKVNFMREWELKMISVEGVEM 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceee
Confidence 48888888999999999999999999999999999654
No 34
>1h99_A Transcription antiterminator LICT; transcriptional antiterminator, PTS regulatory domain; 1.55A {Bacillus subtilis} SCOP: a.142.1.1 a.142.1.1 PDB: 1tlv_A*
Probab=25.59 E-value=68 Score=22.33 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----HHHHHHHHHHhhhh
Q 032021 76 HQSLASNFHLLHLMENLADAIENGTRDQQSDALVNELNNH----FEKCQQLLSSISES 129 (148)
Q Consensus 76 hqsLAShFhL~~lve~Ladaie~GtRDQ~sDaLv~EL~s~----FekcQQLLnSis~s 129 (148)
...|..| |-+++.++..-+.-.+.| ++|++++..+ |+-+..+...|...
T Consensus 148 ~~~l~~H--l~~~~~R~~~~~~~~n~~---~~l~~~ik~~yp~~~~~~~~~~~~l~~~ 200 (224)
T 1h99_A 148 YYRFVTD--LKFFAQRLFNGTHMESED---DFLLDTVKEKYHRAYECTKKIQTYIERE 200 (224)
T ss_dssp HHHHHHH--HHHHHHHHHHTCCCC--C---THHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHcCCCCCCch---HHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 4455555 778888876544333322 5577888665 44444444444443
No 35
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.97 E-value=76 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=20.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHhcCCCC-cchHHHHHHH
Q 032021 77 QSLASNFHLLHLMENLADAIENGTRD-QQSDALVNEL 112 (148)
Q Consensus 77 qsLAShFhL~~lve~Ladaie~GtRD-Q~sDaLv~EL 112 (148)
..++.- |||+++||--|++.+..+ ...++|+.-+
T Consensus 89 ~~~~~~--LLpv~DnlerAl~~~~~~~~~~~~l~~Gv 123 (197)
T 1dkg_A 89 EKFINE--LLPVIDSLDRALEVADKANPDMSAMVEDI 123 (197)
T ss_dssp GGHHHH--SHHHHHHHHHHHHCC------CHHHHHHH
T ss_pred HHHHHH--HHHHHhHHHHHHhhhccccchHHHHHHHH
Confidence 345555 999999999999987542 1224454443
No 36
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=23.82 E-value=2e+02 Score=20.54 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~s 129 (148)
|-|-+|++-+.+..|...-. .+++..|-.-++.-..+++.+...
T Consensus 69 laH~lE~ll~~lr~g~~~~~-~~l~dlll~~~D~l~~lv~~~~~~ 112 (144)
T 3kyj_A 69 RAHLCEDLIGLVRDAGVPMD-GEIVEILLFASDTLRAMLEETAAS 112 (144)
T ss_dssp HHHHHHHHHHHHHHSCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55788898898888876544 788888888888888888887764
No 37
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=23.79 E-value=41 Score=27.58 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=16.9
Q ss_pred hcCCCCcchHHHHHHHHHhHHHHH
Q 032021 97 ENGTRDQQSDALVNELNNHFEKCQ 120 (148)
Q Consensus 97 e~GtRDQ~sDaLv~EL~s~FekcQ 120 (148)
|.|+.+.+-++||++|.+ +.||-
T Consensus 452 ~gGss~~~~~~~v~~~~~-~~~~~ 474 (480)
T 2vch_A 452 DDGTSTKALSLVALKWKA-HKKEL 474 (480)
T ss_dssp TTSHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHH-hHHHh
Confidence 457777788888888876 76663
No 38
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=23.69 E-value=1.7e+02 Score=21.05 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCCcchH--HHHHH---HHHhHHHHHHHHHH
Q 032021 87 HLMENLADAIENGTRDQQSD--ALVNE---LNNHFEKCQQLLSS 125 (148)
Q Consensus 87 ~lve~Ladaie~GtRDQ~sD--aLv~E---L~s~FekcQQLLnS 125 (148)
-+++++++|.+.|++--|++ +--++ +..+...++..|..
T Consensus 28 ~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 28 EATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999988876 33333 35566666666665
No 39
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=23.46 E-value=80 Score=20.29 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHhhhhcccccc
Q 032021 103 QQSDALVNELNNHFEKCQQLLSSISESLDTKAM 135 (148)
Q Consensus 103 Q~sDaLv~EL~s~FekcQQLLnSis~sl~tk~~ 135 (148)
...++..++....+++-.++|+.|+..|.+-..
T Consensus 50 ~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~ 82 (101)
T 3fav_A 50 TAAQAAVVRFQEAANKQKQELDEISTNIRQAGV 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888899999999999999988765443
No 40
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=23.17 E-value=59 Score=26.64 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhc--CCCCcchHHHHHHH-HHhHHHHHHHHHHhhhhccccc
Q 032021 87 HLMENLADAIEN--GTRDQQSDALVNEL-NNHFEKCQQLLSSISESLDTKA 134 (148)
Q Consensus 87 ~lve~Ladaie~--GtRDQ~sDaLv~EL-~s~FekcQQLLnSis~sl~tk~ 134 (148)
-.|++|-+++++ .+.|.....+.+.| .+-++.|+.+|..+-+.+..++
T Consensus 188 dfVdRl~kalrae~~~~~~~~~~~~~~l~qnAnpdck~~lraal~pl~~~~ 238 (262)
T 1d1d_A 188 DFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPG 238 (262)
T ss_dssp HHHHHHHHHHHTSSCCTTTTTHHHHHHHTTSSCHHHHHHHHTSCTTCCSTT
T ss_pred HHHHHHHHHHHhhccCcccchhhHHHHHHHhcCHHHHHHHHHhhhcCCCCC
Confidence 579999999999 78888877755445 6678999999998666665543
No 41
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=22.34 E-value=2.1e+02 Score=20.98 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHhcCCCCcc-hHHHHHHHHHhHHHHHHHHHHhhhhc
Q 032021 95 AIENGTRDQQ-SDALVNELNNHFEKCQQLLSSISESL 130 (148)
Q Consensus 95 aie~GtRDQ~-sDaLv~EL~s~FekcQQLLnSis~sl 130 (148)
....|..+.. .++|+.||.+.-.++|..|-.|..+.
T Consensus 69 ~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~ 105 (140)
T 1o3x_A 69 SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT 105 (140)
T ss_dssp HTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445777766 68999999999999999999887664
No 42
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=22.32 E-value=1.8e+02 Score=19.37 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCcch---HHHHHHHHHhHHHHHHHHHHhhh
Q 032021 89 MENLADAIENGTRDQQS---DALVNELNNHFEKCQQLLSSISE 128 (148)
Q Consensus 89 ve~Ladaie~GtRDQ~s---DaLv~EL~s~FekcQQLLnSis~ 128 (148)
+-.++..+|+-.|+..- .+++.+|..-|.+|-..|..+-.
T Consensus 78 l~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 120 (125)
T 2a0b_A 78 LQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 120 (125)
T ss_dssp HHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778887776553 45788888899988887776543
No 43
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=21.77 E-value=2e+02 Score=19.70 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhc
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESL 130 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl 130 (148)
|..+.+.|-.+...|.........+.+|....+++..-++.+-+.+
T Consensus 71 L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~~ 116 (119)
T 3myf_A 71 TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQL 116 (119)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666777665666777777777777766666655443
No 44
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=21.13 E-value=2.6e+02 Score=20.85 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISES 129 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~s 129 (148)
|-|.+|++-|.+.+|.+--. .+++.-|-.-++....+|..+...
T Consensus 65 laH~~E~~l~~~r~g~~~~~-~~~~~ll~~~~D~l~~~l~~~~~~ 108 (225)
T 2lp4_A 65 TTHLMENLLDEARRGEMQLN-TDIINLFLETKDIMQEQLDAYKNS 108 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCCC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66889999999999987654 678888877788888888877543
No 45
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=21.10 E-value=1.2e+02 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHH
Q 032021 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKC 119 (148)
Q Consensus 87 ~lve~Ladaie~GtRDQ~sDaLv~EL~s~Fekc 119 (148)
-|.+.|.|.|..|. =+..|...+-.+|+||
T Consensus 13 aL~dtLdEli~~~~---Isp~la~kVL~~FDks 42 (108)
T 1nvp_D 13 SLQESLDELIQSQQ---ITPQLALQVLLQFDKA 42 (108)
T ss_dssp HHHHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHH
Confidence 58899999999994 4577999999999986
No 46
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=20.57 E-value=1.5e+02 Score=21.31 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhhhhcccc
Q 032021 86 LHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSISESLDTK 133 (148)
Q Consensus 86 ~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~tk 133 (148)
...++.|++++. +...-++|+.++..++++...-+..+.+....+
T Consensus 130 ~~~i~~lg~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (308)
T 4h59_A 130 RDMIKIDSKALG---MEKEGDELIKNTEARISKELEKHPEIKGKIKGK 174 (308)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 345677788774 234458999999999999888887776654433
No 47
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=20.51 E-value=1.5e+02 Score=25.60 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhHHHHHHHHHHhhhhccc
Q 032021 83 FHLLHLMENLADAIENG--TRDQQSDALVNELNNHFEKCQQLLSSISESLDT 132 (148)
Q Consensus 83 FhL~~lve~Ladaie~G--tRDQ~sDaLv~EL~s~FekcQQLLnSis~sl~t 132 (148)
..|+.++..+++.+.+. ..+....+-|.+|...|+||-..|=.+-.++.+
T Consensus 583 ~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~~ 634 (677)
T 3rip_A 583 NEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRN 634 (677)
T ss_dssp HHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788888889988874 223345678999999999998877776655543
No 48
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=20.51 E-value=1.2e+02 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHH
Q 032021 87 HLMENLADAIENGTRDQQSDALVNELNNHFEKC 119 (148)
Q Consensus 87 ~lve~Ladaie~GtRDQ~sDaLv~EL~s~Fekc 119 (148)
-|.+.|.|.|..|. =+..|...+-.+|+||
T Consensus 17 aL~dtLdEli~~~~---Isp~la~kVL~~FDks 46 (121)
T 1nh2_D 17 SLVDALDTLISDGR---IEASLAMRVLETFDKV 46 (121)
T ss_dssp HHHHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHH
Confidence 58899999999984 4577999999999986
No 49
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.29 E-value=38 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 032021 87 HLMENLADAIENGTRDQQSDALVNELNN 114 (148)
Q Consensus 87 ~lve~Ladaie~GtRDQ~sDaLv~EL~s 114 (148)
.+||+|-|+++.|.=|-.--.|++.+|+
T Consensus 3 ~~~~rl~~~~~kG~VD~~i~~ll~~INs 30 (188)
T 2dvk_A 3 SIEEVLLEERLIGYLDPGAEKVLARINR 30 (188)
T ss_dssp ---------------CGGGHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCChHHHHHHHHHhC
Confidence 3689999999999999988888887664
No 50
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=20.26 E-value=1.1e+02 Score=21.62 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhHHH
Q 032021 88 LMENLADAIENGTRDQQSDALVNELNNHFEK 118 (148)
Q Consensus 88 lve~Ladaie~GtRDQ~sDaLv~EL~s~Fek 118 (148)
.|..|.++++...++-.-..|.++++..+++
T Consensus 40 FIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~ 70 (117)
T 3rjm_B 40 YIEALAQVFSERACDMHVADMLVKVNALIKD 70 (117)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 4778888888777778889999999999884
No 51
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.17 E-value=2.3e+02 Score=21.89 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHhcCCCCcc-hHHHHHHHHHhHHHHHHHHHHhhhhc
Q 032021 95 AIENGTRDQQ-SDALVNELNNHFEKCQQLLSSISESL 130 (148)
Q Consensus 95 aie~GtRDQ~-sDaLv~EL~s~FekcQQLLnSis~sl 130 (148)
....|..+.- .++|+.||.+.-+++|..|-.+..+.
T Consensus 94 ~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~ 130 (186)
T 1oxz_A 94 SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDT 130 (186)
T ss_dssp HTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334666665 68999999999999999998887664
No 52
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5
Probab=20.01 E-value=55 Score=24.88 Aligned_cols=43 Identities=7% Similarity=0.110 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhHHHHHHHHHHhh
Q 032021 85 LLHLMENLADAIENGTRDQQSDALVNELNNHFEKCQQLLSSIS 127 (148)
Q Consensus 85 L~~lve~Ladaie~GtRDQ~sDaLv~EL~s~FekcQQLLnSis 127 (148)
+-+|+++|.+.++.-.+=...|+.+.++..++++.-.+|+...
T Consensus 27 ~~~~~~~~r~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 69 (216)
T 2ov9_A 27 VDRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHA 69 (216)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 3457777777777666666668899999999999999998754
Done!