BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032022
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96X49|PACC_ACRCH pH-response transcription factor pacC/RIM101 OS=Acremonium
chrysogenum GN=pacC PE=1 SV=1
Length = 621
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 22/98 (22%)
Query: 10 KPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPY 69
+PHL+ TP YY HNG T + H + + P+ + AP Y
Sbjct: 163 RPHLNKTPSYY-------------DHNGQMRTQYQ------HHQPAHPNAYYAPQPSTNY 203
Query: 70 DVVFGCPPSTD---SESVGETVSGGSFETLAMCEVVED 104
+ F PP + +E +G G ++ ++V+D
Sbjct: 204 GLYFNQPPLNNHQRTEHLGYGAPPGGYDRKRAFDMVDD 241
>sp|B1JKS3|TRPA_YERPY Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=trpA PE=3 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADGDLLREIASHG 170
>sp|Q66AK5|TRPA_YERPS Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|B2K3W1|TRPA_YERPB Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|A7FI34|TRPA_YERP3 Tryptophan synthase alpha chain OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|A4TJ68|TRPA_YERPP Tryptophan synthase alpha chain OS=Yersinia pestis (strain
Pestoides F) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|Q1CJ29|TRPA_YERPN Tryptophan synthase alpha chain OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|A9R995|TRPA_YERPG Tryptophan synthase alpha chain OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=trpA PE=3 SV=1
Length = 271
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|Q8ZEH0|TRPA_YERPE Tryptophan synthase alpha chain OS=Yersinia pestis GN=trpA PE=3
SV=1
Length = 268
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|Q1C7P3|TRPA_YERPA Tryptophan synthase alpha chain OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=trpA PE=3 SV=1
Length = 268
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 22 CPPALEERESLTSHNGTASTFTR--------GLLVDFHLEASTPDTFRAPPLPLPYDVVF 73
P L +L HNG + R L+ D E S P FRA L +F
Sbjct: 95 IPIGLLMYANLVFHNGIDHFYQRCAEVGVDSVLIADVPFEESAP--FRAAALRHGIAPIF 152
Query: 74 GCPPSTDSESVGETVSGG 91
CPP+ D + + E S G
Sbjct: 153 ICPPNADDDLLREIASHG 170
>sp|O60320|F1891_HUMAN Protein FAM189A1 OS=Homo sapiens GN=FAM189A1 PE=2 SV=4
Length = 539
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 44 RGLLVDF---------HLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVS 89
RGL +DF + ++P LP PY+ V G PP++ S+G+ V+
Sbjct: 264 RGLHLDFAPSPFGTLYDVAINSPGLLYPAELPPPYEAVVGQPPASQVTSIGQQVA 318
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 26/112 (23%)
Query: 58 DTFRAPPLPLPYDV---VFGC-----------------PPSTDSESVGETVSGGSFETLA 97
+ FR+ P PLPYD F P +DS++ E+ G +
Sbjct: 75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWAN 134
Query: 98 MCEVVEDADCKTQAS-----SLIASPRKSEVSQL-NVFAASEEEDTCPICLE 143
+ D D K + S ++ S KS ++ N++ SE+ED CP CLE
Sbjct: 135 NKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLE 186
>sp|P20131|P69_TYMVA 69 kDa protein OS=Turnip yellow mosaic virus (isolate Australia)
PE=3 SV=1
Length = 628
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 22 CPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDS 81
PPA + + SL H TR H A PD P LP V+ P T
Sbjct: 118 LPPAPQRQHSLPLH------ITRPSRFPHHFHARRPDVL--PSLPDHGPVLAETKPRTSV 169
Query: 82 ESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLN 127
T G SF + + EVV D +S P +S QL
Sbjct: 170 RQPRSTTRGPSFRPILLPEVVHVHDDPPHSS---LRPGRSRSRQLQ 212
>sp|A7KAN4|ATG26_PENCW Sterol 3-beta-glucosyltransferase OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=atg26 PE=3 SV=1
Length = 1374
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 95 TLAMCEVVEDADCKTQASSLIASPRKSEVSQLN 127
TL E EDA T S L+ S R S V+QLN
Sbjct: 593 TLGHNETTEDARYATGQSDLMQSSRPSSVTQLN 625
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,667,390
Number of Sequences: 539616
Number of extensions: 2002644
Number of successful extensions: 3448
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3441
Number of HSP's gapped (non-prelim): 28
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)