Query 032022
Match_columns 148
No_of_seqs 65 out of 67
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 13:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032022.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032022hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fbva4 g.44.1.1 (A:356-434) C 68.2 1 7.3E-05 28.6 1.5 14 134-147 22-35 (79)
2 d1v87a_ g.44.1.1 (A:) Deltex p 66.9 0.67 4.9E-05 30.6 0.5 12 135-146 25-36 (114)
3 d2drpa2 g.37.1.1 (A:140-165) T 46.5 2.7 0.00019 22.3 0.6 10 138-147 4-13 (26)
4 d1bora_ g.44.1.1 (A:) Acute pr 45.8 3.7 0.00027 24.5 1.2 14 134-147 5-18 (56)
5 d3dplr1 g.44.1.1 (R:19-106) RI 43.9 4.3 0.00032 25.7 1.4 13 135-147 21-33 (88)
6 d1jm7b_ g.44.1.1 (B:) bard1 RI 36.7 4.6 0.00033 25.7 0.7 15 133-147 20-34 (97)
7 d1rmda2 g.44.1.1 (A:1-86) V(D) 33.0 5 0.00036 25.9 0.3 13 134-146 22-34 (86)
8 d1yuza2 g.41.5.1 (A:167-202) N 23.7 10 0.00076 21.2 0.6 8 135-142 20-27 (36)
9 d1nnqa2 g.41.5.1 (A:135-171) R 23.6 11 0.00077 21.2 0.6 8 136-143 21-28 (37)
10 d2j9ub1 g.41.11.1 (B:115-161) 22.7 9.3 0.00068 22.8 0.2 6 137-142 5-10 (47)
No 1
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.19 E-value=1 Score=28.56 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=10.8
Q ss_pred cccCCCcccCccCC
Q 032022 134 EEDTCPICLEVKSS 147 (148)
Q Consensus 134 eEDVCPtCLEEYt~ 147 (148)
+..+||||+|++..
T Consensus 22 ~~~~C~IC~~~~~~ 35 (79)
T d1fbva4 22 TFQLCKICAENDKD 35 (79)
T ss_dssp CTTBCTTTSSSBCC
T ss_pred CCCCCccCCCcCCC
Confidence 34679999998753
No 2
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=66.85 E-value=0.67 Score=30.64 Aligned_cols=12 Identities=42% Similarity=0.955 Sum_probs=9.2
Q ss_pred ccCCCcccCccC
Q 032022 135 EDTCPICLEVKS 146 (148)
Q Consensus 135 EDVCPtCLEEYt 146 (148)
++.|+||+|++.
T Consensus 25 ~~~C~IC~e~l~ 36 (114)
T d1v87a_ 25 EEDCIICMEKLA 36 (114)
T ss_dssp SCEETTTTEETT
T ss_pred cccccchhheec
Confidence 344999999874
No 3
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=46.52 E-value=2.7 Score=22.29 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=9.0
Q ss_pred CCcccCccCC
Q 032022 138 CPICLEVKSS 147 (148)
Q Consensus 138 CPtCLEEYt~ 147 (148)
||.|..|+|.
T Consensus 4 cp~cfkeftr 13 (26)
T d2drpa2 4 CPFCFKEFTR 13 (26)
T ss_dssp CTTTCCEESC
T ss_pred CchhhHHhcc
Confidence 9999999974
No 4
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.78 E-value=3.7 Score=24.46 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=10.7
Q ss_pred cccCCCcccCccCC
Q 032022 134 EEDTCPICLEVKSS 147 (148)
Q Consensus 134 eEDVCPtCLEEYt~ 147 (148)
+.-.||||++.|..
T Consensus 5 ~~l~C~IC~~~~~~ 18 (56)
T d1bora_ 5 QFLRCQQCQAEAKC 18 (56)
T ss_dssp CCSSCSSSCSSCBC
T ss_pred CCCCCcccCcccCC
Confidence 44569999998863
No 5
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.94 E-value=4.3 Score=25.67 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.0
Q ss_pred ccCCCcccCccCC
Q 032022 135 EDTCPICLEVKSS 147 (148)
Q Consensus 135 EDVCPtCLEEYt~ 147 (148)
+|.|+||+++++.
T Consensus 21 ~d~C~IC~~~~~~ 33 (88)
T d3dplr1 21 VDNCAICRNHIMD 33 (88)
T ss_dssp SCCCSSSCSCTTS
T ss_pred CCcCEEccchhhC
Confidence 4559999998764
No 6
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.73 E-value=4.6 Score=25.75 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.0
Q ss_pred CcccCCCcccCccCC
Q 032022 133 EEEDTCPICLEVKSS 147 (148)
Q Consensus 133 EeEDVCPtCLEEYt~ 147 (148)
+++-.||||++.|+.
T Consensus 20 ~~~l~C~IC~~~~~~ 34 (97)
T d1jm7b_ 20 EKLLRCSRCTNILRE 34 (97)
T ss_dssp HHTTSCSSSCSCCSS
T ss_pred hhcCCCccCCchhhc
Confidence 344569999998853
No 7
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.98 E-value=5 Score=25.92 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.5
Q ss_pred cccCCCcccCccC
Q 032022 134 EEDTCPICLEVKS 146 (148)
Q Consensus 134 eEDVCPtCLEEYt 146 (148)
++-.||||+|.+.
T Consensus 22 ~~l~C~IC~~~~~ 34 (86)
T d1rmda2 22 KSISCQICEHILA 34 (86)
T ss_dssp HHTBCTTTCSBCS
T ss_pred cCcCCccCCcchh
Confidence 5567999999875
No 8
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.73 E-value=10 Score=21.19 Aligned_cols=8 Identities=50% Similarity=1.476 Sum_probs=6.3
Q ss_pred ccCCCccc
Q 032022 135 EDTCPICL 142 (148)
Q Consensus 135 EDVCPtCL 142 (148)
-|+||+|.
T Consensus 20 Pe~CPvCg 27 (36)
T d1yuza2 20 FEKCPICF 27 (36)
T ss_dssp CSBCTTTC
T ss_pred CCcCCCCC
Confidence 36799996
No 9
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.58 E-value=11 Score=21.24 Aligned_cols=8 Identities=38% Similarity=1.252 Sum_probs=6.3
Q ss_pred cCCCcccC
Q 032022 136 DTCPICLE 143 (148)
Q Consensus 136 DVCPtCLE 143 (148)
|+||+|--
T Consensus 21 ~~CPvCg~ 28 (37)
T d1nnqa2 21 EYCPVCGA 28 (37)
T ss_dssp SBCTTTCC
T ss_pred CcCCCCCC
Confidence 68999963
No 10
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=22.72 E-value=9.3 Score=22.83 Aligned_cols=6 Identities=67% Similarity=2.073 Sum_probs=5.3
Q ss_pred CCCccc
Q 032022 137 TCPICL 142 (148)
Q Consensus 137 VCPtCL 142 (148)
|||||.
T Consensus 5 ~CPICm 10 (47)
T d2j9ub1 5 VCPICM 10 (47)
T ss_dssp ECTTTC
T ss_pred ecceee
Confidence 799996
Done!