AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>032024
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEV
REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK
TYDNVCHRKENTRKPLKPLMKRTRRKYS
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G09980 AT3G09980 AT3G09980	protein from Arabidopsis thaliana	1.2e-26
BLAST match view associations BLAST with AT2G36410 AT2G36410 AT2G36410	protein from Arabidopsis thaliana	3.6e-25
BLAST match view associations BLAST with AT3G52920 AT3G52920 AT3G52920	protein from Arabidopsis thaliana	6.8e-24
BLAST match view associations BLAST with AT5G03660 AT5G03660 AT5G03660	protein from Arabidopsis thaliana	9.0e-22
BLAST match view associations BLAST with AT2G27740 AT2G27740 AT2G27740	protein from Arabidopsis thaliana	5.1e-19
BLAST match view associations BLAST with AT3G52900 AT3G52900 AT3G52900	protein from Arabidopsis thaliana	1.3e-13
BLAST match view associations BLAST with AT2G36355 AT2G36355 AT2G36355	protein from Arabidopsis thaliana	5.8e-11
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032024
        (148 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2100083 - symbol:AT3G09980 "AT3G09980" species...   300  1.2e-26   1
TAIR|locus:2044883 - symbol:AT2G36410 species:3702 "Arabi...   286  3.6e-25   1
TAIR|locus:2085231 - symbol:AT3G52920 species:3702 "Arabi...   274  6.8e-24   1
TAIR|locus:2144618 - symbol:AT5G03660 "AT5G03660" species...   254  9.0e-22   1
TAIR|locus:2041985 - symbol:AT2G27740 "AT2G27740" species...   228  5.1e-19   1
TAIR|locus:2085206 - symbol:AT3G52900 "AT3G52900" species...   177  1.3e-13   1
TAIR|locus:1009023152 - symbol:AT2G36355 "AT2G36355" spec...   152  5.8e-11   1


>TAIR|locus:2100083 [details] [associations]
            symbol:AT3G09980 "AT3G09980" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009733 "response to auxin stimulus" evidence=RCA]
            [GO:0005886 "plasma membrane" evidence=IDA] GO:GO:0005886
            EMBL:CP002686 GenomeReviews:BA000014_GR eggNOG:NOG77007
            InterPro:IPR007033 PANTHER:PTHR21470 Pfam:PF04949
            HOGENOM:HOG000239121 EMBL:AY080593 EMBL:AY117192 EMBL:BT023737
            EMBL:AK226504 IPI:IPI00541878 RefSeq:NP_187609.2 UniGene:At.40010
            IntAct:Q8RXZ8 PaxDb:Q8RXZ8 PRIDE:Q8RXZ8 EnsemblPlants:AT3G09980.1
            GeneID:820159 KEGG:ath:AT3G09980 TAIR:At3g09980 InParanoid:Q8RXZ8
            OMA:LADPMRK PhylomeDB:Q8RXZ8 ProtClustDB:CLSN2917931
            ArrayExpress:Q8RXZ8 Genevestigator:Q8RXZ8 Uniprot:Q8RXZ8
        Length = 178

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 64/88 (72%), Positives = 68/88 (77%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEMSR+AL+ FRA               VQA LGRVEEETKRLA IREELE LADPM
Sbjct:    40 KEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPM 99

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEVA+VRKKIDSVNKELKPLGHT QKK
Sbjct:   100 RKEVAMVRKKIDSVNKELKPLGHTVQKK 127


>TAIR|locus:2044883 [details] [associations]
            symbol:AT2G36410 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0007020 "microtubule nucleation" evidence=RCA]
            GO:GO:0005886 EMBL:CP002685 EMBL:AC006919 InterPro:IPR007033
            PANTHER:PTHR21470 Pfam:PF04949 EMBL:AY128363 EMBL:BT000342
            IPI:IPI00539039 PIR:D84780 RefSeq:NP_565846.1 UniGene:At.37557
            IntAct:Q9SJR4 PRIDE:Q9SJR4 EnsemblPlants:AT2G36410.1 GeneID:818215
            KEGG:ath:AT2G36410 TAIR:At2g36410 InParanoid:Q9SJR4 OMA:KRIDKVN
            PhylomeDB:Q9SJR4 ProtClustDB:CLSN2917249 ArrayExpress:Q9SJR4
            Genevestigator:Q9SJR4 Uniprot:Q9SJR4
        Length = 195

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/88 (67%), Positives = 69/88 (78%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             ++DEEM+RSAL+ FRA               +QA LGRVE+ETKRL+TIREELE++ADPM
Sbjct:    55 REDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPM 114

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV+VVRKKIDSVNKELKPLG T QKK
Sbjct:   115 RKEVSVVRKKIDSVNKELKPLGSTVQKK 142


>TAIR|locus:2085231 [details] [associations]
            symbol:AT3G52920 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005886 "plasma membrane" evidence=IDA]
            GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR007033 PANTHER:PTHR21470 Pfam:PF04949 EMBL:AY088252
            IPI:IPI00517958 RefSeq:NP_566974.1 UniGene:At.35247 IntAct:Q8L9S7
            PaxDb:Q8L9S7 PRIDE:Q8L9S7 EnsemblPlants:AT3G52920.1 GeneID:824458
            KEGG:ath:AT3G52920 TAIR:At3g52920 eggNOG:NOG285358
            HOGENOM:HOG000239121 InParanoid:Q8L9S7 OMA:ETMADPM PhylomeDB:Q8L9S7
            ProtClustDB:CLSN2917424 Genevestigator:Q8L9S7 Uniprot:Q8L9S7
        Length = 180

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 59/88 (67%), Positives = 66/88 (75%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEM+RSAL+ FRA               V+A LGRVEEET+RLA+IREELE +ADPM
Sbjct:    26 KEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPM 85

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV  VRKKIDSVNKELKPLG T QKK
Sbjct:    86 RKEVNWVRKKIDSVNKELKPLGSTVQKK 113


>TAIR|locus:2144618 [details] [associations]
            symbol:AT5G03660 "AT5G03660" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=ISM;IDA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0005886 GO:GO:0009506
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR007033
            PANTHER:PTHR21470 Pfam:PF04949 HOGENOM:HOG000239121 EMBL:AY054234
            EMBL:AY072382 EMBL:AY114621 EMBL:AY088699 IPI:IPI00531221
            RefSeq:NP_568126.1 UniGene:At.4766 PaxDb:Q940P0 PRIDE:Q940P0
            ProMEX:Q940P0 DNASU:831768 EnsemblPlants:AT5G03660.1 GeneID:831768
            KEGG:ath:AT5G03660 TAIR:At5g03660 eggNOG:NOG281953
            InParanoid:Q940P0 OMA:ESKRLAM PhylomeDB:Q940P0
            ProtClustDB:CLSN2917547 ArrayExpress:Q940P0 Genevestigator:Q940P0
            Uniprot:Q940P0
        Length = 173

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 53/88 (60%), Positives = 64/88 (72%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+D+E+S  AL+ F+A               VQA LGRVE+E+KRLA IREELE  ADPM
Sbjct:    34 KEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVEDESKRLAMIREELEGFADPM 93

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV +VRKKIDS++KELKPLG+T QKK
Sbjct:    94 RKEVTMVRKKIDSLDKELKPLGNTVQKK 121


>TAIR|locus:2041985 [details] [associations]
            symbol:AT2G27740 "AT2G27740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005824
            InterPro:IPR007033 PANTHER:PTHR21470 Pfam:PF04949
            HOGENOM:HOG000239121 EMBL:BT012525 EMBL:BT014824 EMBL:AK228886
            IPI:IPI00544742 PIR:D84676 RefSeq:NP_180342.1 UniGene:At.38726
            EnsemblPlants:AT2G27740.1 GeneID:817320 KEGG:ath:AT2G27740
            TAIR:At2g27740 eggNOG:NOG283820 InParanoid:Q9ZUX5 OMA:QRIKSSG
            PhylomeDB:Q9ZUX5 ProtClustDB:CLSN2913119 ArrayExpress:Q9ZUX5
            Genevestigator:Q9ZUX5 Uniprot:Q9ZUX5
        Length = 174

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query:    35 DEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMRK 94
             +EE+S+SA   F+A               VQ  LG  EE T+RLA IREELEAL DPMRK
Sbjct:    37 EEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRK 96

Query:    95 EVAVVRKKIDSVNKELKPLGHTCQKK 120
             E++ +RK++D++N+ELKPLG +CQ+K
Sbjct:    97 EISAIRKRVDAINRELKPLGQSCQRK 122


>TAIR|locus:2085206 [details] [associations]
            symbol:AT3G52900 "AT3G52900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] EMBL:CP002686 EMBL:AL132969 InterPro:IPR007033
            PANTHER:PTHR21470 Pfam:PF04949 UniGene:At.71206 EMBL:AK229551
            IPI:IPI00546127 PIR:T47547 RefSeq:NP_190858.1 UniGene:At.35249
            PRIDE:Q9LFA1 EnsemblPlants:AT3G52900.1 GeneID:824456
            KEGG:ath:AT3G52900 TAIR:At3g52900 InParanoid:Q9LFA1 OMA:IWEELEV
            PhylomeDB:Q9LFA1 ProtClustDB:CLSN2915553 Genevestigator:Q9LFA1
            Uniprot:Q9LFA1
        Length = 164

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/87 (43%), Positives = 51/87 (58%)

Query:    34 DDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMR 93
             ++EE+ + A+T F+A               VQ  LG  EE T+ L    EELE + DPMR
Sbjct:    27 EEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIMGDPMR 86

Query:    94 KEVAVVRKKIDSVNKELKPLGHTCQKK 120
             KEV +VRKKID  N+++K L  +CQKK
Sbjct:    87 KEVGMVRKKIDMANRDIKSLAQSCQKK 113


>TAIR|locus:1009023152 [details] [associations]
            symbol:AT2G36355 "AT2G36355" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR
            InterPro:IPR007033 PANTHER:PTHR21470 Pfam:PF04949 EMBL:DQ487515
            IPI:IPI00656637 RefSeq:NP_001031492.1 UniGene:At.43496
            UniGene:At.70720 EnsemblPlants:AT2G36355.1 GeneID:3768555
            KEGG:ath:AT2G36355 TAIR:At2g36355 OMA:NQEEEIW PhylomeDB:Q1G3R9
            Genevestigator:Q2V423 Uniprot:Q1G3R9
        Length = 155

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query:    64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             +Q  LG  EE T+ L    E LE + DPMRKEV +VRKKI+  N+E+K L  +CQKK
Sbjct:    48 IQQRLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKK 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       105   0.00091  102 3  11 23  0.44    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  488 (52 KB)
  Total size of DFA:  95 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.44u 0.10s 15.54t   Elapsed:  00:00:00
  Total cpu time:  15.44u 0.10s 15.54t   Elapsed:  00:00:00
  Start:  Mon May 20 15:29:10 2013   End:  Mon May 20 15:29:10 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
